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The costly and time-consuming annotation process to produce large training sets for modelling semantic LiDAR segmentation methods has motivated the development of semi-supervised learning (SSL) methods. However, such SSL approaches often concentrate on employing consistency learning only for individual LiDAR representations. This narrow focus results in limited perturbations that generally fail to enable effective consistency learning. Additionally, these SSL approaches employ contrastive learning based on the sampling from a limited set of positive and negative embedding samples. This paper introduces a novel semi-supervised LiDAR semantic segmentation framework called ItTakesTwo (IT2). IT2 is designed to ensure consistent predictions from peer LiDAR representations, thereby improving the perturbation effectiveness in consistency learning. Furthermore, our contrastive learning employs informative samples drawn from a distribution of positive and negative embeddings learned from the entire training set. Results on public benchmarks show that our approach achieves remarkable improvements over the previous state-of-the-art (SOTA) methods in the field. The code is available at: https://github.com/yyliu01/IT2., Comment: 27 pages (15 pages main paper and 12 pages supplementary with references), ECCV 2024 accepted

Audio-visual segmentation (AVS) is an emerging task that aims to accurately segment sounding objects based on audio-visual cues. The success of AVS learning systems depends on the effectiveness of cross-modal interaction. Such a requirement can be naturally fulfilled by leveraging transformer-based segmentation architecture due to its inherent ability to capture long-range dependencies and flexibility in handling different modalities. However, the inherent training issues of transformer-based methods, such as the low efficacy of cross-attention and unstable bipartite matching, can be amplified in AVS, particularly when the learned audio query does not provide a clear semantic clue. In this paper, we address these two issues with the new Class-conditional Prompting Machine (CPM). CPM improves the bipartite matching with a learning strategy combining class-agnostic queries with class-conditional queries. The efficacy of cross-modal attention is upgraded with new learning objectives for the audio, visual and joint modalities. We conduct experiments on AVS benchmarks, demonstrating that our method achieves state-of-the-art (SOTA) segmentation accuracy.

In multi-modal learning, some modalities are more influential than others, and their absence can have a significant impact on classification/segmentation accuracy. Hence, an important research question is if it is possible for trained multi-modal models to have high accuracy even when influential modalities are absent from the input data. In this paper, we propose a novel approach called Meta-learned Cross-modal Knowledge Distillation (MCKD) to address this research question. MCKD adaptively estimates the importance weight of each modality through a meta-learning process. These dynamically learned modality importance weights are used in a pairwise cross-modal knowledge distillation process to transfer the knowledge from the modalities with higher importance weight to the modalities with lower importance weight. This cross-modal knowledge distillation produces a highly accurate model even with the absence of influential modalities. Differently from previous methods in the field, our approach is designed to work in multiple tasks (e.g., segmentation and classification) with minimal adaptation. Experimental results on the Brain tumor Segmentation Dataset 2018 (BraTS2018) and the Audiovision-MNIST classification dataset demonstrate the superiority of MCKD over current state-of-the-art models. Particularly in BraTS2018, we achieve substantial improvements of 3.51\% for enhancing tumor, 2.19\% for tumor core, and 1.14\% for the whole tumor in terms of average segmentation Dice score.

In contemporary society, the effective utilization of public resources remains a subject of significant concern. A common issue arises from defectors seeking to obtain an excessive share of these resources for personal gain, potentially leading to resource depletion. To mitigate this tragedy and ensure sustainable development of resources, implementing mechanisms to either reward those who adhere to distribution rules or penalize those who do not, appears advantageous. We introduce two models: a tax-reward model and a tax-punishment model, to address this issue. Our analysis reveals that in the tax-reward model, the evolutionary trajectory of the system is influenced not only by the tax revenue collected but also by the natural growth rate of the resources. Conversely, the tax-punishment model exhibits distinct characteristics when compared to the tax-reward model, notably the potential for bistability. In such scenarios, the selection of initial conditions is critical, as it can determine the system's path. Furthermore, our study identifies instances where the system lacks stable points, exemplified by a limit cycle phenomenon, underscoring the complexity and dynamism inherent in managing public resources using these models., Comment: Accepted by Proceedings of the Royal Society B-Biological Sciences

Prototypical-part methods, e.g., ProtoPNet, enhance interpretability in image recognition by linking predictions to training prototypes, thereby offering intuitive insights into their decision-making. Existing methods, which rely on a point-based learning of prototypes, typically face two critical issues: 1) the learned prototypes have limited representation power and are not suitable to detect Out-of-Distribution (OoD) inputs, reducing their decision trustworthiness; and 2) the necessary projection of the learned prototypes back into the space of training images causes a drastic degradation in the predictive performance. Furthermore, current prototype learning adopts an aggressive approach that considers only the most active object parts during training, while overlooking sub-salient object regions which still hold crucial classification information. In this paper, we present a new generative paradigm to learn prototype distributions, termed as Mixture of Gaussian-distributed Prototypes (MGProto). The distribution of prototypes from MGProto enables both interpretable image classification and trustworthy recognition of OoD inputs. The optimisation of MGProto naturally projects the learned prototype distributions back into the training image space, thereby addressing the performance degradation caused by prototype projection. Additionally, we develop a novel and effective prototype mining strategy that considers not only the most active but also sub-salient object parts. To promote model compactness, we further propose to prune MGProto by removing prototypes with low importance priors. Experiments on CUB-200-2011, Stanford Cars, Stanford Dogs, and Oxford-IIIT Pets datasets show that MGProto achieves state-of-the-art image recognition and OoD detection performances, while providing encouraging interpretability results.

Noisy label learning has been tackled with both discriminative and generative approaches. Despite the simplicity and efficiency of discriminative methods, generative models offer a more principled way of disentangling clean and noisy labels and estimating the label transition matrix. However, existing generative methods often require inferring additional latent variables through costly generative modules or heuristic assumptions, which hinder adaptive optimisation for different causal directions. They also assume a uniform clean label prior, which does not reflect the sample-wise clean label distribution and uncertainty. In this paper, we propose a novel framework for generative noisy label learning that addresses these challenges. First, we propose a new single-stage optimisation that directly approximates image generation by a discriminative classifier output. This approximation significantly reduces the computation cost of image generation, preserves the generative modelling benefits, and enables our framework to be agnostic in regards to different causality scenarios (i.e., image generate label or vice-versa). Second, we introduce a new Partial Label Supervision (PLS) for noisy label learning that accounts for both clean label coverage and uncertainty. The supervision of PLS does not merely aim at minimising loss, but seeks to capture the underlying sample-wise clean label distribution and uncertainty. Extensive experiments on computer vision and natural language processing (NLP) benchmarks demonstrate that our generative modelling achieves state-of-the-art results while significantly reducing the computation cost. Our code is available at https://github.com/lfb-1/GNL.

Audio-visual segmentation (AVS) is a challenging task that involves accurately segmenting sounding objects based on audio-visual cues. The effectiveness of audio-visual learning critically depends on achieving accurate cross-modal alignment between sound and visual objects. Successful audio-visual learning requires two essential components: 1) a challenging dataset with high-quality pixel-level multi-class annotated images associated with audio files, and 2) a model that can establish strong links between audio information and its corresponding visual object. However, these requirements are only partially addressed by current methods, with training sets containing biased audio-visual data, and models that generalise poorly beyond this biased training set. In this work, we propose a new cost-effective strategy to build challenging and relatively unbiased high-quality audio-visual segmentation benchmarks. We also propose a new informative sample mining method for audio-visual supervised contrastive learning to leverage discriminative contrastive samples to enforce cross-modal understanding. We show empirical results that demonstrate the effectiveness of our benchmark. Furthermore, experiments conducted on existing AVS datasets and on our new benchmark show that our method achieves state-of-the-art (SOTA) segmentation accuracy., Comment: Code is available at https://github.com/cyh-0/CAVP

Methods to detect malignant lesions from screening mammograms are usually trained with fully annotated datasets, where images are labelled with the localisation and classification of cancerous lesions. However, real-world screening mammogram datasets commonly have a subset that is fully annotated and another subset that is weakly annotated with just the global classification (i.e., without lesion localisation). Given the large size of such datasets, researchers usually face a dilemma with the weakly annotated subset: to not use it or to fully annotate it. The first option will reduce detection accuracy because it does not use the whole dataset, and the second option is too expensive given that the annotation needs to be done by expert radiologists. In this paper, we propose a middle-ground solution for the dilemma, which is to formulate the training as a weakly- and semi-supervised learning problem that we refer to as malignant breast lesion detection with incomplete annotations. To address this problem, our new method comprises two stages, namely: 1) pre-training a multi-view mammogram classifier with weak supervision from the whole dataset, and 2) extending the trained classifier to become a multi-view detector that is trained with semi-supervised student-teacher learning, where the training set contains fully and weakly-annotated mammograms. We provide extensive detection results on two real-world screening mammogram datasets containing incomplete annotations, and show that our proposed approach achieves state-of-the-art results in the detection of malignant breast lesions with incomplete annotations., Comment: Under Review

Prototypical part network (ProtoPNet) methods have been designed to achieve interpretable classification by associating predictions with a set of training prototypes, which we refer to as trivial prototypes because they are trained to lie far from the classification boundary in the feature space. Note that it is possible to make an analogy between ProtoPNet and support vector machine (SVM) given that the classification from both methods relies on computing similarity with a set of training points (i.e., trivial prototypes in ProtoPNet, and support vectors in SVM). However, while trivial prototypes are located far from the classification boundary, support vectors are located close to this boundary, and we argue that this discrepancy with the well-established SVM theory can result in ProtoPNet models with inferior classification accuracy. In this paper, we aim to improve the classification of ProtoPNet with a new method to learn support prototypes that lie near the classification boundary in the feature space, as suggested by the SVM theory. In addition, we target the improvement of classification results with a new model, named ST-ProtoPNet, which exploits our support prototypes and the trivial prototypes to provide more effective classification. Experimental results on CUB-200-2011, Stanford Cars, and Stanford Dogs datasets demonstrate that ST-ProtoPNet achieves state-of-the-art classification accuracy and interpretability results. We also show that the proposed support prototypes tend to be better localised in the object of interest rather than in the background region., Comment: ICCV 2023, Code: https://github.com/cwangrun/ST-ProtoPNet

Semantic segmentation models classify pixels into a set of known (``in-distribution'') visual classes. When deployed in an open world, the reliability of these models depends on their ability not only to classify in-distribution pixels but also to detect out-of-distribution (OoD) pixels. Historically, the poor OoD detection performance of these models has motivated the design of methods based on model re-training using synthetic training images that include OoD visual objects. Although successful, these re-trained methods have two issues: 1) their in-distribution segmentation accuracy may drop during re-training, and 2) their OoD detection accuracy does not generalise well to new contexts (e.g., country surroundings) outside the training set (e.g., city surroundings). In this paper, we mitigate these issues with: (i) a new residual pattern learning (RPL) module that assists the segmentation model to detect OoD pixels without affecting the inlier segmentation performance; and (ii) a novel context-robust contrastive learning (CoroCL) that enforces RPL to robustly detect OoD pixels among various contexts. Our approach improves by around 10\% FPR and 7\% AuPRC the previous state-of-the-art in Fishyscapes, Segment-Me-If-You-Can, and RoadAnomaly datasets. Our code is available at: https://github.com/yyliu01/RPL., Comment: The paper contains 16 pages and it is accepted by ICCV'23

State-of-the-art (SOTA) deep learning mammogram classifiers, trained with weakly-labelled images, often rely on global models that produce predictions with limited interpretability, which is a key barrier to their successful translation into clinical practice. On the other hand, prototype-based models improve interpretability by associating predictions with training image prototypes, but they are less accurate than global models and their prototypes tend to have poor diversity. We address these two issues with the proposal of BRAIxProtoPNet++, which adds interpretability to a global model by ensembling it with a prototype-based model. BRAIxProtoPNet++ distills the knowledge of the global model when training the prototype-based model with the goal of increasing the classification accuracy of the ensemble. Moreover, we propose an approach to increase prototype diversity by guaranteeing that all prototypes are associated with different training images. Experiments on weakly-labelled private and public datasets show that BRAIxProtoPNet++ has higher classification accuracy than SOTA global and prototype-based models. Using lesion localisation to assess model interpretability, we show BRAIxProtoPNet++ is more effective than other prototype-based models and post-hoc explanation of global models. Finally, we show that the diversity of the prototypes learned by BRAIxProtoPNet++ is superior to SOTA prototype-based approaches., Comment: MICCAI 2022

3D medical image segmentation methods have been successful, but their dependence on large amounts of voxel-level annotated data is a disadvantage that needs to be addressed given the high cost to obtain such annotation. Semi-supervised learning (SSL) solve this issue by training models with a large unlabelled and a small labelled dataset. The most successful SSL approaches are based on consistency learning that minimises the distance between model responses obtained from perturbed views of the unlabelled data. These perturbations usually keep the spatial input context between views fairly consistent, which may cause the model to learn segmentation patterns from the spatial input contexts instead of the segmented objects. In this paper, we introduce the Translation Consistent Co-training (TraCoCo) which is a consistency learning SSL method that perturbs the input data views by varying their spatial input context, allowing the model to learn segmentation patterns from visual objects. Furthermore, we propose the replacement of the commonly used mean squared error (MSE) semi-supervised loss by a new Cross-model confident Binary Cross entropy (CBC) loss, which improves training convergence and keeps the robustness to co-training pseudo-labelling mistakes. We also extend CutMix augmentation to 3D SSL to further improve generalisation. Our TraCoCo shows state-of-the-art results for the Left Atrium (LA) and Brain Tumor Segmentation (BRaTS19) datasets with different backbones. Our code is available at https://github.com/yyliu01/TraCoCo.

Unsupervised anomaly detection (UAD) aims to find anomalous images by optimising a detector using a training set that contains only normal images. UAD approaches can be based on reconstruction methods, self-supervised approaches, and Imagenet pre-trained models. Reconstruction methods, which detect anomalies from image reconstruction errors, are advantageous because they do not rely on the design of problem-specific pretext tasks needed by self-supervised approaches, and on the unreliable translation of models pre-trained from non-medical datasets. However, reconstruction methods may fail because they can have low reconstruction errors even for anomalous images. In this paper, we introduce a new reconstruction-based UAD approach that addresses this low-reconstruction error issue for anomalous images. Our UAD approach, the memory-augmented multi-level cross-attentional masked autoencoder (MemMC-MAE), is a transformer-based approach, consisting of a novel memory-augmented self-attention operator for the encoder and a new multi-level cross-attention operator for the decoder. MemMCMAE masks large parts of the input image during its reconstruction, reducing the risk that it will produce low reconstruction errors because anomalies are likely to be masked and cannot be reconstructed. However, when the anomaly is not masked, then the normal patterns stored in the encoder's memory combined with the decoder's multi-level cross attention will constrain the accurate reconstruction of the anomaly. We show that our method achieves SOTA anomaly detection and localisation on colonoscopy, pneumonia, and covid-19 chest x-ray datasets., Comment: Accepted to MICCAI MLMI2023

Current polyp detection methods from colonoscopy videos use exclusively normal (i.e., healthy) training images, which i) ignore the importance of temporal information in consecutive video frames, and ii) lack knowledge about the polyps. Consequently, they often have high detection errors, especially on challenging polyp cases (e.g., small, flat, or partially visible polyps). In this work, we formulate polyp detection as a weakly-supervised anomaly detection task that uses video-level labelled training data to detect frame-level polyps. In particular, we propose a novel convolutional transformer-based multiple instance learning method designed to identify abnormal frames (i.e., frames with polyps) from anomalous videos (i.e., videos containing at least one frame with polyp). In our method, local and global temporal dependencies are seamlessly captured while we simultaneously optimise video and snippet-level anomaly scores. A contrastive snippet mining method is also proposed to enable an effective modelling of the challenging polyp cases. The resulting method achieves a detection accuracy that is substantially better than current state-of-the-art approaches on a new large-scale colonoscopy video dataset introduced in this work., Comment: MICCAI 2022 Early Accept

Deep learning methods have shown outstanding classification accuracy in medical imaging problems, which is largely attributed to the availability of large-scale datasets manually annotated with clean labels. However, given the high cost of such manual annotation, new medical imaging classification problems may need to rely on machine-generated noisy labels extracted from radiology reports. Indeed, many Chest X-ray (CXR) classifiers have already been modelled from datasets with noisy labels, but their training procedure is in general not robust to noisy-label samples, leading to sub-optimal models. Furthermore, CXR datasets are mostly multi-label, so current noisy-label learning methods designed for multi-class problems cannot be easily adapted. In this paper, we propose a new method designed for the noisy multi-label CXR learning, which detects and smoothly re-labels samples from the dataset, which is then used to train common multi-label classifiers. The proposed method optimises a bag of multi-label descriptors (BoMD) to promote their similarity with the semantic descriptors produced by BERT models from the multi-label image annotation. Our experiments on diverse noisy multi-label training sets and clean testing sets show that our model has state-of-the-art accuracy and robustness in many CXR multi-label classification benchmarks., Comment: Code is available at https://github.com/cyh-0/BoMD

Effective semi-supervised learning (SSL) in medical image analysis (MIA) must address two challenges: 1) work effectively on both multi-class (e.g., lesion classification) and multi-label (e.g., multiple-disease diagnosis) problems, and 2) handle imbalanced learning (because of the high variance in disease prevalence). One strategy to explore in SSL MIA is based on the pseudo labelling strategy, but it has a few shortcomings. Pseudo-labelling has in general lower accuracy than consistency learning, it is not specifically designed for both multi-class and multi-label problems, and it can be challenged by imbalanced learning. In this paper, unlike traditional methods that select confident pseudo label by threshold, we propose a new SSL algorithm, called anti-curriculum pseudo-labelling (ACPL), which introduces novel techniques to select informative unlabelled samples, improving training balance and allowing the model to work for both multi-label and multi-class problems, and to estimate pseudo labels by an accurate ensemble of classifiers (improving pseudo label accuracy). We run extensive experiments to evaluate ACPL on two public medical image classification benchmarks: Chest X-Ray14 for thorax disease multi-label classification and ISIC2018 for skin lesion multi-class classification. Our method outperforms previous SOTA SSL methods on both datasets, Comment: CVPR 2022

Consistency learning using input image, feature, or network perturbations has shown remarkable results in semi-supervised semantic segmentation, but this approach can be seriously affected by inaccurate predictions of unlabelled training images. There are two consequences of these inaccurate predictions: 1) the training based on the "strict" cross-entropy (CE) loss can easily overfit prediction mistakes, leading to confirmation bias; and 2) the perturbations applied to these inaccurate predictions will use potentially erroneous predictions as training signals, degrading consistency learning. In this paper, we address the prediction accuracy problem of consistency learning methods with novel extensions of the mean-teacher (MT) model, which include a new auxiliary teacher, and the replacement of MT's mean square error (MSE) by a stricter confidence-weighted cross-entropy (Conf-CE) loss. The accurate prediction by this model allows us to use a challenging combination of network, input data and feature perturbations to improve the consistency learning generalisation, where the feature perturbations consist of a new adversarial perturbation. Results on public benchmarks show that our approach achieves remarkable improvements over the previous SOTA methods in the field. Our code is available at https://github.com/yyliu01/PS-MT., Comment: CVPR 2022 camera-ready

State-of-the-art (SOTA) anomaly segmentation approaches on complex urban driving scenes explore pixel-wise classification uncertainty learned from outlier exposure, or external reconstruction models. However, previous uncertainty approaches that directly associate high uncertainty to anomaly may sometimes lead to incorrect anomaly predictions, and external reconstruction models tend to be too inefficient for real-time self-driving embedded systems. In this paper, we propose a new anomaly segmentation method, named pixel-wise energy-biased abstention learning (PEBAL), that explores pixel-wise abstention learning (AL) with a model that learns an adaptive pixel-level anomaly class, and an energy-based model (EBM) that learns inlier pixel distribution. More specifically, PEBAL is based on a non-trivial joint training of EBM and AL, where EBM is trained to output high-energy for anomaly pixels (from outlier exposure) and AL is trained such that these high-energy pixels receive adaptive low penalty for being included to the anomaly class. We extensively evaluate PEBAL against the SOTA and show that it achieves the best performance across four benchmarks. Code is available at https://github.com/tianyu0207/PEBAL., Comment: ECCV 2022 Oral

Unsupervised anomaly detection (UAD) methods are trained with normal (or healthy) images only, but during testing, they are able to classify normal and abnormal (or disease) images. UAD is an important medical image analysis (MIA) method to be applied in disease screening problems because the training sets available for those problems usually contain only normal images. However, the exclusive reliance on normal images may result in the learning of ineffective low-dimensional image representations that are not sensitive enough to detect and segment unseen abnormal lesions of varying size, appearance, and shape. Pre-training UAD methods with self-supervised learning, based on computer vision techniques, can mitigate this challenge, but they are sub-optimal because they do not explore domain knowledge for designing the pretext tasks, and their contrastive learning losses do not try to cluster the normal training images, which may result in a sparse distribution of normal images that is ineffective for anomaly detection. In this paper, we propose a new self-supervised pre-training method for MIA UAD applications, named Pseudo Multi-class Strong Augmentation via Contrastive Learning (PMSACL). PMSACL consists of a novel optimisation method that contrasts a normal image class from multiple pseudo classes of synthesised abnormal images, with each class enforced to form a dense cluster in the feature space. In the experiments, we show that our PMSACL pre-training improves the accuracy of SOTA UAD methods on many MIA benchmarks using colonoscopy, fundus screening and Covid-19 Chest X-ray datasets. The code is made publicly available via https://github.com/tianyu0207/PMSACL., Comment: Accepted to Medical Image Analysis

Real-world large-scale medical image analysis (MIA) datasets have three challenges: 1) they contain noisy-labelled samples that affect training convergence and generalisation, 2) they usually have an imbalanced distribution of samples per class, and 3) they normally comprise a multi-label problem, where samples can have multiple diagnoses. Current approaches are commonly trained to solve a subset of those problems, but we are unaware of methods that address the three problems simultaneously. In this paper, we propose a new training module called Non-Volatile Unbiased Memory (NVUM), which non-volatility stores running average of model logits for a new regularization loss on noisy multi-label problem. We further unbias the classification prediction in NVUM update for imbalanced learning problem. We run extensive experiments to evaluate NVUM on new benchmarks proposed by this paper, where training is performed on noisy multi-label imbalanced chest X-ray (CXR) training sets, formed by Chest-Xray14 and CheXpert, and the testing is performed on the clean multi-label CXR datasets OpenI and PadChest. Our method outperforms previous state-of-the-art CXR classifiers and previous methods that can deal with noisy labels on all evaluations. Our code is available at https://github.com/FBLADL/NVUM., Comment: MICCAI 2022 Early Accept

In this paper, we propose and analyse a system that can automatically detect, localise and classify polyps from colonoscopy videos. The detection of frames with polyps is formulated as a few-shot anomaly classification problem, where the training set is highly imbalanced with the large majority of frames consisting of normal images and a small minority comprising frames with polyps. Colonoscopy videos may contain blurry images and frames displaying feces and water jet sprays to clean the colon -- such frames can mistakenly be detected as anomalies, so we have implemented a classifier to reject these two types of frames before polyp detection takes place. Next, given a frame containing a polyp, our method localises (with a bounding box around the polyp) and classifies it into five different classes. Furthermore, we study a method to improve the reliability and interpretability of the classification result using uncertainty estimation and classification calibration. Classification uncertainty and calibration not only help improve classification accuracy by rejecting low-confidence and high-uncertain results, but can be used by doctors to decide how to decide on the classification of a polyp. All the proposed detection, localisation and classification methods are tested using large data sets and compared with relevant baseline approaches., Comment: Preprint to submit to IEEE journals

The automatic detection of frames containing polyps from a colonoscopy video sequence is an important first step for a fully automated colonoscopy analysis tool. Typically, such detection system is built using a large annotated data set of frames with and without polyps, which is expensive to be obtained. In this paper, we introduce a new system that detects frames containing polyps as anomalies from a distribution of frames from exams that do not contain any polyps. The system is trained using a one-class training set consisting of colonoscopy frames without polyps -- such training set is considerably less expensive to obtain, compared to the 2-class data set mentioned above. During inference, the system is only able to reconstruct frames without polyps, and when it tries to reconstruct a frame with polyp, it automatically removes (i.e., photoshop) it from the frame -- the difference between the input and reconstructed frames is used to detect frames with polyps. We name our proposed model as anomaly detection generative adversarial network (ADGAN), comprising a dual GAN with two generators and two discriminators. We show that our proposed approach achieves the state-of-the-art result on this data set, compared with recently proposed anomaly detection systems., Comment: Accepted by ISBI 2020