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External pollution load in the Baltic Sea originates from urban, agricultural and industrial sources. Emissions of heavy metals have decreased substantially in the catchment area but the temporal trends are not always significant and differ with sample, area and pollutant. The most significant source of anthropogenic radioactivity in the Baltic Sea is fallout from the Chernobyl accident in 1986. Many factors affect the future development of pollutant concentrations including anthropogenic emissions, political decisions and changes in salinity, temperature and water currents, in eutrophication and oxygen status, in fisheries and in atmospheric deposition of pollutants. Large scale changes like eutrophication and climate change affect ecosystems in many ways, directly and indirectly, causing biological and abiotic effects. These factors are interrelated and difficult to predict. Measures aiming to enhance the ecological status of the Baltic Sea will certainly give positive results but this will take at least several decades.

Mercury is known for its biomagnification especially in aquatic food chains and for its toxic effects on different organisms including man. In Finland mercury has formerly been used in industry and agriculture and in addition many anthropogenic activities may increase the mercury levels in ecosystems. Phenyl mercury was widely used as slimicide in the pulp and paper industry in the 1950's and 1960's. In the chlor-alkali industry metallic mercury was used as catalyst at three plants. The most toxic form of mercury, methyl mercury, may be formed in soils, water, sediments and organisms. Many factors, including microbial activity, temperature, oxygen status etc., affect the methylation rate. In the lake ecosystem bioaccumulation of methyl mercury is very strong. In early 1980's there was a restriction of fishing concerning approximately 4000 km2 of lakes and sea areas because of mercury pollution. In aquatic systems we still find elevated concentrations near former emission sources. Long-range atmospheric transport and mechanical operations like ditching and water regulation may cause increased levels of mercury in the aquatic ecosystems. In the Finnish agriculture organic mercury compounds were used for seed dressing until 1992. Although the amounts used were substantial the concentrations in agricultural soils have remained rather low. In terrestrial food chains bioaccumulation is normally weak with low or moderate concentration at all ecosystem levels. Due to a weak uptake through roots terrestrial, vascular plants normally contain only small amounts of mercury. There is a bidirectional exchange of mercury between vegetation and atmosphere. Contrary to vascular plants, there is a very wide range of concentrations in fungi. Mercury may pose a threat to human health especially when accumulated in aquatic food chains.