26 results on '"Lorna Flanagan"'
Search Results
2. Supplementary Table ST2 from A Stepwise Integrated Approach to Personalized Risk Predictions in Stage III Colorectal Cancer
- Author
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Jochen H.M. Prehn, Markus Rehm, Daniel B. Longley, Bryan T. Hennessy, Sandra Van Schaeybroeck, Pierre Laurent-Puig, Elaine W. Kay, Deborah A. McNamara, Manuel Salto-Tellez, Sophie Camilleri-Broët, Richard Wilson, Patrick G. Johnston, Mark Lawler, Sinead Toomey, Lisa M. Schöller, Elisabeth Zink, Camilla Pilati, Nadege Rice, Sonali Dasgupta, Lorna Flanagan, Robert O'Byrne, Áine C. Murphy, Alexa J. Resler, Orna Bacon, Andreas U. Lindner, Mattia Cremona, Sarah Curry, Clare Morgan, Maximilian L. Würstle, and Manuela Salvucci
- Abstract
Unadjusted and multivariate Cox proportional hazards analyses to examine the association of APOPTO-CELL and APOPTO-CELL-PC3 signatures with DFS in n=157 stage III patients of the expansion cohort.
- Published
- 2023
3. Supplementary Table ST1 from A Stepwise Integrated Approach to Personalized Risk Predictions in Stage III Colorectal Cancer
- Author
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Jochen H.M. Prehn, Markus Rehm, Daniel B. Longley, Bryan T. Hennessy, Sandra Van Schaeybroeck, Pierre Laurent-Puig, Elaine W. Kay, Deborah A. McNamara, Manuel Salto-Tellez, Sophie Camilleri-Broët, Richard Wilson, Patrick G. Johnston, Mark Lawler, Sinead Toomey, Lisa M. Schöller, Elisabeth Zink, Camilla Pilati, Nadege Rice, Sonali Dasgupta, Lorna Flanagan, Robert O'Byrne, Áine C. Murphy, Alexa J. Resler, Orna Bacon, Andreas U. Lindner, Mattia Cremona, Sarah Curry, Clare Morgan, Maximilian L. Würstle, and Manuela Salvucci
- Abstract
Patient clinicopathological and demographic characteristics in the patients of the discovery, expansion and validation cohorts.
- Published
- 2023
4. Supplementary Methods SM2 from A Stepwise Integrated Approach to Personalized Risk Predictions in Stage III Colorectal Cancer
- Author
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Jochen H.M. Prehn, Markus Rehm, Daniel B. Longley, Bryan T. Hennessy, Sandra Van Schaeybroeck, Pierre Laurent-Puig, Elaine W. Kay, Deborah A. McNamara, Manuel Salto-Tellez, Sophie Camilleri-Broët, Richard Wilson, Patrick G. Johnston, Mark Lawler, Sinead Toomey, Lisa M. Schöller, Elisabeth Zink, Camilla Pilati, Nadege Rice, Sonali Dasgupta, Lorna Flanagan, Robert O'Byrne, Áine C. Murphy, Alexa J. Resler, Orna Bacon, Andreas U. Lindner, Mattia Cremona, Sarah Curry, Clare Morgan, Maximilian L. Würstle, and Manuela Salvucci
- Abstract
Detailed description of the measurements used as inputs for the apoptosis-based signatures in the discovery, expansion and validation cohorts.
- Published
- 2023
5. Supplementary Methods SM1 from A Stepwise Integrated Approach to Personalized Risk Predictions in Stage III Colorectal Cancer
- Author
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Jochen H.M. Prehn, Markus Rehm, Daniel B. Longley, Bryan T. Hennessy, Sandra Van Schaeybroeck, Pierre Laurent-Puig, Elaine W. Kay, Deborah A. McNamara, Manuel Salto-Tellez, Sophie Camilleri-Broët, Richard Wilson, Patrick G. Johnston, Mark Lawler, Sinead Toomey, Lisa M. Schöller, Elisabeth Zink, Camilla Pilati, Nadege Rice, Sonali Dasgupta, Lorna Flanagan, Robert O'Byrne, Áine C. Murphy, Alexa J. Resler, Orna Bacon, Andreas U. Lindner, Mattia Cremona, Sarah Curry, Clare Morgan, Maximilian L. Würstle, and Manuela Salvucci
- Abstract
Detailed description of the patients data handling and inclusion criteria for downstream analyses of the discovery, expansion and validation cohorts.
- Published
- 2023
6. Supplementary Figure S3 from A Stepwise Integrated Approach to Personalized Risk Predictions in Stage III Colorectal Cancer
- Author
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Jochen H.M. Prehn, Markus Rehm, Daniel B. Longley, Bryan T. Hennessy, Sandra Van Schaeybroeck, Pierre Laurent-Puig, Elaine W. Kay, Deborah A. McNamara, Manuel Salto-Tellez, Sophie Camilleri-Broët, Richard Wilson, Patrick G. Johnston, Mark Lawler, Sinead Toomey, Lisa M. Schöller, Elisabeth Zink, Camilla Pilati, Nadege Rice, Sonali Dasgupta, Lorna Flanagan, Robert O'Byrne, Áine C. Murphy, Alexa J. Resler, Orna Bacon, Andreas U. Lindner, Mattia Cremona, Sarah Curry, Clare Morgan, Maximilian L. Würstle, and Manuela Salvucci
- Abstract
Impact of each predictor included in the Random Forest classifier on the probability of recurrence alone and in combination with the others.
- Published
- 2023
7. Supplementary Figure S1 from A Stepwise Integrated Approach to Personalized Risk Predictions in Stage III Colorectal Cancer
- Author
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Jochen H.M. Prehn, Markus Rehm, Daniel B. Longley, Bryan T. Hennessy, Sandra Van Schaeybroeck, Pierre Laurent-Puig, Elaine W. Kay, Deborah A. McNamara, Manuel Salto-Tellez, Sophie Camilleri-Broët, Richard Wilson, Patrick G. Johnston, Mark Lawler, Sinead Toomey, Lisa M. Schöller, Elisabeth Zink, Camilla Pilati, Nadege Rice, Sonali Dasgupta, Lorna Flanagan, Robert O'Byrne, Áine C. Murphy, Alexa J. Resler, Orna Bacon, Andreas U. Lindner, Mattia Cremona, Sarah Curry, Clare Morgan, Maximilian L. Würstle, and Manuela Salvucci
- Abstract
Kaplan-Meier estimates for disease-free and overall survival for n=120 stage III patients of the discovery cohort. Patients were grouped based on the protein expression of Procaspase-9, XIAP, SMAC and Procaspase-3. Median expression was used as cut-off value.
- Published
- 2023
8. Data from A Stepwise Integrated Approach to Personalized Risk Predictions in Stage III Colorectal Cancer
- Author
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Jochen H.M. Prehn, Markus Rehm, Daniel B. Longley, Bryan T. Hennessy, Sandra Van Schaeybroeck, Pierre Laurent-Puig, Elaine W. Kay, Deborah A. McNamara, Manuel Salto-Tellez, Sophie Camilleri-Broët, Richard Wilson, Patrick G. Johnston, Mark Lawler, Sinead Toomey, Lisa M. Schöller, Elisabeth Zink, Camilla Pilati, Nadege Rice, Sonali Dasgupta, Lorna Flanagan, Robert O'Byrne, Áine C. Murphy, Alexa J. Resler, Orna Bacon, Andreas U. Lindner, Mattia Cremona, Sarah Curry, Clare Morgan, Maximilian L. Würstle, and Manuela Salvucci
- Abstract
Purpose: Apoptosis is essential for chemotherapy responses. In this discovery and validation study, we evaluated the suitability of a mathematical model of apoptosis execution (APOPTO-CELL) as a stand-alone signature and as a constituent of further refined prognostic stratification tools.Experimental Design: Apoptosis competency of primary tumor samples from patients with stage III colorectal cancer (n = 120) was calculated by APOPTO-CELL from measured protein concentrations of Procaspase-3, Procaspase-9, SMAC, and XIAP. An enriched APOPTO-CELL signature (APOPTO-CELL-PC3) was synthesized to capture apoptosome-independent effects of Caspase-3. Furthermore, a machine learning Random Forest approach was applied to APOPTO-CELL-PC3 and available molecular and clinicopathologic data to identify a further enhanced signature. Association of the signature with prognosis was evaluated in an independent colon adenocarcinoma cohort (TCGA COAD, n = 136).Results: We identified 3 prognostic biomarkers (P = 0.04, P = 0.006, and P = 0.0004 for APOPTO-CELL, APOPTO-CELL-PC3, and Random Forest signatures, respectively) with increasing stratification accuracy for patients with stage III colorectal cancer.The APOPTO-CELL-PC3 signature ranked highest among all features. The prognostic value of the signatures was independently validated in stage III TCGA COAD patients (P = 0.01, P = 0.04, and P = 0.02 for APOPTO-CELL, APOPTO-CELL-PC3, and Random Forest signatures, respectively). The signatures provided further stratification for patients with CMS1-3 molecular subtype.Conclusions: The integration of a systems-biology–based biomarker for apoptosis competency with machine learning approaches is an appealing and innovative strategy toward refined patient stratification. The prognostic value of apoptosis competency is independent of other available clinicopathologic and molecular factors, with tangible potential of being introduced in the clinical management of patients with stage III colorectal cancer. Clin Cancer Res; 23(5); 1200–12. ©2016 AACR.
- Published
- 2023
9. Supplementary Methods SM3 from A Stepwise Integrated Approach to Personalized Risk Predictions in Stage III Colorectal Cancer
- Author
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Jochen H.M. Prehn, Markus Rehm, Daniel B. Longley, Bryan T. Hennessy, Sandra Van Schaeybroeck, Pierre Laurent-Puig, Elaine W. Kay, Deborah A. McNamara, Manuel Salto-Tellez, Sophie Camilleri-Broët, Richard Wilson, Patrick G. Johnston, Mark Lawler, Sinead Toomey, Lisa M. Schöller, Elisabeth Zink, Camilla Pilati, Nadege Rice, Sonali Dasgupta, Lorna Flanagan, Robert O'Byrne, Áine C. Murphy, Alexa J. Resler, Orna Bacon, Andreas U. Lindner, Mattia Cremona, Sarah Curry, Clare Morgan, Maximilian L. Würstle, and Manuela Salvucci
- Abstract
Detailed description of the survival analyses performed in both primary and exploratory studies.
- Published
- 2023
10. A Stepwise Integrated Approach to Personalized Risk Predictions in Stage III Colorectal Cancer
- Author
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Elaine W. Kay, Lisa M. Schöller, Sarah Curry, Elisabeth Zink, Bryan T. Hennessy, Manuel Salto-Tellez, Orna Bacon, Camilla Pilati, Pierre Laurent-Puig, Manuela Salvucci, Sophie Camilleri-Broët, Deborah A. McNamara, Robert O'Byrne, Jochen H. M. Prehn, Patrick G. Johnston, Nadege Rice, Mark Lawler, Lorna Flanagan, Sinead Toomey, Richard H. Wilson, Aine C. Murphy, Daniel B. Longley, Sandra Van Schaeybroeck, Markus Rehm, Clare Morgan, Andreas U. Lindner, Alexa Resler, Maximilian L. Würstle, Mattia Cremona, and Sonali Dasgupta
- Subjects
Male ,0301 basic medicine ,Oncology ,Cancer Research ,medicine.medical_specialty ,Apoptosis ,Bioinformatics ,Risk Assessment ,Disease-Free Survival ,Machine Learning ,03 medical and health sciences ,0302 clinical medicine ,Text mining ,Internal medicine ,Biomarkers, Tumor ,medicine ,Humans ,Precision Medicine ,Stage (cooking) ,Aged ,Neoplasm Staging ,Caspase 3 ,business.industry ,Gene Expression Profiling ,Systems Biology ,Cancer ,Middle Aged ,Models, Theoretical ,Prognosis ,medicine.disease ,Precision medicine ,Primary tumor ,Caspase 9 ,XIAP ,Gene expression profiling ,030104 developmental biology ,030220 oncology & carcinogenesis ,Biomarker (medicine) ,Female ,Colorectal Neoplasms ,business - Abstract
Purpose: Apoptosis is essential for chemotherapy responses. In this discovery and validation study, we evaluated the suitability of a mathematical model of apoptosis execution (APOPTO-CELL) as a stand-alone signature and as a constituent of further refined prognostic stratification tools. Experimental Design: Apoptosis competency of primary tumor samples from patients with stage III colorectal cancer (n = 120) was calculated by APOPTO-CELL from measured protein concentrations of Procaspase-3, Procaspase-9, SMAC, and XIAP. An enriched APOPTO-CELL signature (APOPTO-CELL-PC3) was synthesized to capture apoptosome-independent effects of Caspase-3. Furthermore, a machine learning Random Forest approach was applied to APOPTO-CELL-PC3 and available molecular and clinicopathologic data to identify a further enhanced signature. Association of the signature with prognosis was evaluated in an independent colon adenocarcinoma cohort (TCGA COAD, n = 136). Results: We identified 3 prognostic biomarkers (P = 0.04, P = 0.006, and P = 0.0004 for APOPTO-CELL, APOPTO-CELL-PC3, and Random Forest signatures, respectively) with increasing stratification accuracy for patients with stage III colorectal cancer. The APOPTO-CELL-PC3 signature ranked highest among all features. The prognostic value of the signatures was independently validated in stage III TCGA COAD patients (P = 0.01, P = 0.04, and P = 0.02 for APOPTO-CELL, APOPTO-CELL-PC3, and Random Forest signatures, respectively). The signatures provided further stratification for patients with CMS1-3 molecular subtype. Conclusions: The integration of a systems-biology–based biomarker for apoptosis competency with machine learning approaches is an appealing and innovative strategy toward refined patient stratification. The prognostic value of apoptosis competency is independent of other available clinicopathologic and molecular factors, with tangible potential of being introduced in the clinical management of patients with stage III colorectal cancer. Clin Cancer Res; 23(5); 1200–12. ©2016 AACR.
- Published
- 2017
11. A Study of the Background Levels of Male DNA on Underpants Worn by Females
- Author
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Clara Boland, Charlotte Murphy, Jennifer Ryan, June Kenna, Lorna Flanagan, and Marce Lee Gorman
- Subjects
Male ,Social contact ,01 natural sciences ,Pathology and Forensic Medicine ,Clothing ,03 medical and health sciences ,0302 clinical medicine ,Genetics ,Medicine ,Humans ,030216 legal & forensic medicine ,Sexual assault ,Chromosomes, Human, Y ,business.industry ,010401 analytical chemistry ,social sciences ,DNA ,DNA Fingerprinting ,0104 chemical sciences ,Background level ,Reference sample ,Female ,business ,Sexual contact ,Demography ,Microsatellite Repeats - Abstract
This study is the first to examine the background level of male DNA on underpants worn by females in the absence of sexual contact. Here, we examined 103 samples from the inside front of underpants from 85 female volunteers. Samples were examined for the presence of male DNA using NGM SElect and PowerPlex Y23 kits. Only five samples gave a "complete" Y-STR profile, even though 83.5% of our volunteers cohabited with a male. In all cases where a partner reference sample was available, the Y-STR profile matched the cohabiting partner. We have demonstrated that a Y-STR profile is not expected on the inside front of underpants worn by females after social contact alone. The results of this study are informative for evaluating the significance of a Y-STR profile on underpants in cases of alleged sexual assault.
- Published
- 2019
12. BCL-2 system analysis identifies high-risk colorectal cancer patients
- Author
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Sinead Toomey, Bryan T. Hennessy, Pierre Laurent-Puig, Richard H. Wilson, Andreas U. Lindner, Elaine W. Kay, Naser Monsefi, Mattia Cremona, Manuela Salvucci, Michael Stühler, Orna Bacon, Alexa Resler, Sarah Curry, Robert O'Byrne, Sandra Van Schaeybroeck, Patrick G. Johnston, Lorna Flanagan, Deborah A. McNamara, Manuel Salto-Tellez, Clare Morgan, Sophie Camilleri-Broët, and Jochen H. M. Prehn
- Subjects
Adult ,Male ,0301 basic medicine ,Oncology ,medicine.medical_specialty ,Lymphovascular invasion ,Colorectal cancer ,Apoptosis ,Bioinformatics ,Risk Assessment ,03 medical and health sciences ,0302 clinical medicine ,Cancer genome ,Internal medicine ,Gene expression ,Biomarkers, Tumor ,medicine ,Humans ,In patient ,Pathological ,Neoplasm Staging ,business.industry ,Gastroenterology ,Decision Support Systems, Clinical ,Prognosis ,medicine.disease ,3. Good health ,Survival Rate ,030104 developmental biology ,Proto-Oncogene Proteins c-bcl-2 ,Lymphatic Metastasis ,030220 oncology & carcinogenesis ,Cohort ,Female ,Colorectal Neoplasms ,business - Abstract
ObjectiveThe mitochondrial apoptosis pathway is controlled by an interaction of multiple BCL-2 family proteins, and plays a key role in tumour progression and therapy responses. We assessed the prognostic potential of an experimentally validated, mathematical model of BCL-2 protein interactions (DR_MOMP) in patients with stage III colorectal cancer (CRC).DesignAbsolute protein levels of BCL-2 family proteins were determined in primary CRC tumours collected from n=128 resected and chemotherapy-treated patients with stage III CRC. We applied DR_MOMP to categorise patients as high or low risk based on model outputs, and compared model outputs with known prognostic factors (T-stage, N-stage, lymphovascular invasion). DR_MOMP signatures were validated on protein of n=156 patients with CRC from the Cancer Genome Atlas (TCGA) project.ResultsHigh-risk stage III patients identified by DR_MOMP had an approximately fivefold increased risk of death compared with patients identified as low risk (HR 5.2, 95% CI 1.4 to 17.9, p=0.02). The DR_MOMP signature ranked highest among all molecular and pathological features analysed. The prognostic signature was validated in the TCGA colon adenocarcinoma (COAD) cohort (HR 4.2, 95% CI 1.1 to 15.6, p=0.04). DR_MOMP also further stratified patients identified by supervised gene expression risk scores into low-risk and high-risk categories. BCL-2-dependent signalling critically contributed to treatment responses in consensus molecular subtypes 1 and 3, linking for the first time specific molecular subtypes to apoptosis signalling.ConclusionsDR_MOMP delivers a system-based biomarker with significant potential as a prognostic tool for stage III CRC that significantly improves established histopathological risk factors.
- Published
- 2016
13. Targeting the 19S proteasomal subunit, Rpt4, for the treatment of colon cancer
- Author
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Annette T. Byrne, Frank E. Murray, Niamh McCawley, Caoimhín G. Concannon, Karen Boland, Deborah A. McNamara, Jochen H. M. Prehn, Elaine W. Kay, Ritesh M. Pabari, Lorna Flanagan, and Zebunnissa Ramtoola
- Subjects
0301 basic medicine ,Proteasome Endopeptidase Complex ,Colorectal cancer ,Apoptosis ,Biology ,03 medical and health sciences ,0302 clinical medicine ,In vivo ,medicine ,Humans ,Gene silencing ,Gene Silencing ,Molecular Targeted Therapy ,Treatment Failure ,RNA, Small Interfering ,Pharmacology ,Drug Carriers ,Cell growth ,Endoplasmic reticulum ,Endoplasmic Reticulum Stress ,HCT116 Cells ,medicine.disease ,Molecular biology ,Gene Expression Regulation, Neoplastic ,Blot ,030104 developmental biology ,Proteasome ,Gene Knockdown Techniques ,030220 oncology & carcinogenesis ,Cancer research ,Nanoparticles ,Colorectal Neoplasms - Abstract
Deregulation of the ubiquitin-proteasome pathway has been frequently observed in a number of malignancies. Using quantitative Western blotting of normal and matched tumour tissue, we here identified a significant increase in the 19S proteasome subunit Rpt4 in response to chemoradiation in locally advanced rectal cancer patients with unfavourable outcome. We therefore explored the potential of Rpt4 reduction as a therapeutic strategy in colorectal cancer (CRC). Utilizing siRNA to down regulate Rpt4 expression, we show that silencing of Rpt4 reduced proteasomal activity and induced endoplasmic reticulum stress. Gene silencing of Rpt4 also inhibited cell proliferation, reduced clonogenic survival and induced apoptosis in HCT-116 colon cancer cells. We next developed a cell penetrating peptide-based nanoparticle delivery system to achieve in vivo gene silencing of Rpt4. Administration of Rpt4 siRNA nanoparticles reduced tumour growth and improved survival in a HCT-116 colon cancer xenograft tumour model in vivo. Collectively, our data suggest that inhibition of Rpt4 represents a novel strategy for the treatment of CRC.
- Published
- 2016
14. BCL2 protein signalling determines acute responses to neoadjuvant chemoradiotherapy in rectal cancer
- Author
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Jochen H. M. Prehn, Andreas U. Lindner, Joan Kehoe, Heinrich J. Huber, Lorna Flanagan, C. de Chaumont, Sinead Toomey, Elaine W. Kay, Deborah A. McNamara, Orna Bacon, Bryan T. Hennessy, and Joanna Fay
- Subjects
Adult ,Male ,Oncology ,medicine.medical_specialty ,Myeloid ,Colorectal cancer ,medicine.medical_treatment ,Apoptosis ,Mitochondrial Membrane Transport Proteins ,hemic and lymphatic diseases ,Internal medicine ,Drug Discovery ,medicine ,Humans ,MCL1 ,B-cell lymphoma ,Genetics (clinical) ,Neoadjuvant therapy ,Aged ,Mitochondrial Permeability Transition Pore ,Rectal Neoplasms ,business.industry ,Chemoradiotherapy, Adjuvant ,Middle Aged ,medicine.disease ,Neoadjuvant Therapy ,Leukemia ,Treatment Outcome ,medicine.anatomical_structure ,Proto-Oncogene Proteins c-bcl-2 ,Mitochondrial Membranes ,Cancer cell ,Molecular Medicine ,Female ,business ,Chemoradiotherapy ,DNA Damage ,Signal Transduction - Abstract
In locally advanced rectal cancer, neoadjuvant chemoradiotherapy is performed prior to surgery to downstage the tumour. Thirty to 40 % of patients do not respond. Defects in apoptotic machinery lead to therapy resistance; however, to date, no study quantitatively assessed whether B cell lymphoma 2 (BCL2)-dependent regulation of mitochondrial apoptosis, effector caspase activation downstream of mitochondria or a combination of both predicts patient responses. In a cohort of 20 rectal cancer patients, we performed protein profiling of tumour tissue and employed validated ordinary differential equation-based systems models of apoptosis signalling to calculate the ability of cancer cells to undergo apoptosis. Model outputs were compared to clinical responses. Systems modelling of BCL2-signalling predicted patients in the poor response group (p = 0.0049). Systems modelling also demonstrated that rectal cancers depended on BCL2 rather than B cell lymphoma-extra large (BCL(X)L) or myeloid cell leukemia 1 (MCL1) for survival, suggesting that poor responders may benefit from therapy with selective BCL2 antagonists. Dynamic modelling of effector caspase activation could not stratify patients with poor response and did not further improve predictive power. We deliver a powerful patient stratification tool identifying patients who will likely not benefit from neoadjuvant chemoradiotherapy and should be prioritised for surgical resection or treatment with BCL2 antagonists.Modelling BCL2-family proteins identifies patients unresponsive to therapy. Caspase activation downstream of mitochondria cannot identify these patients. Rectal tumours of poor responders are BCL2- but not BCL-XL-dependent. DR_MOMP allows clinicians to identify patients who would not benefit from therapy. DR_MOMP is also a useful patient stratification tool for BCL2 antagonists.
- Published
- 2014
15. Fusobacterium nucleatum associates with stages of colorectal neoplasia development, colorectal cancer and disease outcome
- Author
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Tereza Kunická, Matthias P. Ebert, Jochen H. M. Prehn, Jasmin Schmid, Nicki Dezeeuw, Massimo Tommasino, David J. Hughes, Jan Bruha, Vaclav Liska, Pavel Soucek, Lorna Flanagan, Paul Neary, and Mazda Jenab
- Subjects
Adenoma ,Male ,Proto-Oncogene Proteins B-raf ,Microbiology (medical) ,medicine.medical_specialty ,Pathology ,Colorectal cancer ,Mutation, Missense ,Kaplan-Meier Estimate ,Colorectal adenoma ,Gastroenterology ,Cohort Studies ,Proto-Oncogene Proteins p21(ras) ,Feces ,Proto-Oncogene Proteins ,Internal medicine ,medicine ,Humans ,Risk factor ,Aged ,Neoplasm Staging ,Aged, 80 and over ,Fusobacterium nucleatum ,biology ,business.industry ,Cancer ,General Medicine ,Middle Aged ,Prognosis ,medicine.disease ,biology.organism_classification ,Bacterial Load ,digestive system diseases ,Molecular Typing ,Infectious Diseases ,Dysplasia ,Disease Progression ,ras Proteins ,Biomarker (medicine) ,Female ,Tumor Suppressor Protein p53 ,Colorectal Neoplasms ,business - Abstract
Commensal bacteria in the colon may play a role in colorectal cancer (CRC) development. Recent studies from North America showed that Fusobacterium nucleatum (Fn) infection is over-represented in disease tissue versus matched normal tissue in CRC patients. Using quantitative real-time polymerase chain reaction (qPCR) of DNA extracted from colorectal tissue biopsies and surgical resections of three European cohorts totalling 122 CRC patients, we found an over-abundance of Fn in cancerous compared to matched normal tissue (p < 0.0001). To determine whether Fn infection is an early event in CRC development, we assayed Fn in colorectal adenoma (CRA) tissue from 52 Irish patients. While for all CRAs the Fn level was not statistically significantly higher in disease versus normal tissue (p = 0.06), it was significantly higher for high-grade dysplasia (p = 0.015). As a secondary objective, we determined that CRC patients with low Fn levels had a significantly longer overall survival time than patients with moderate and high levels of the bacterium (p = 0.008). The investigation of Fn as a potential non-invasive biomarker for CRC screening showed that, while Fn was more abundant in stool samples from CRC patients compared to adenomas or controls, the levels in stool did not correlate with cancer or adenoma tissue levels from the same individuals. This is the first study examining Fn in the colonic tissue and stool of European CRC and CRA patients, and suggests Fn as a novel risk factor for disease progression from adenoma to cancer, possibly affecting patient survival outcomes. Our results highlight the potential of Fn detection as a diagnostic and prognostic determinant in CRC patients.
- Published
- 2014
16. Mislocalization of Mitochondrial Intermembrane Space Proteins
- Author
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J.H.M. Prehn, Federico Lucantoni, and Lorna Flanagan
- Subjects
Mitochondrial outer membrane permeabilization ,medicine.anatomical_structure ,Mitochondrial biogenesis ,Chemistry ,Apoptosis ,Mitochondrial intermembrane space ,Translocase of the outer membrane ,Cell ,medicine ,Intermembrane space ,Inner mitochondrial membrane ,Cell biology - Abstract
In this chapter, we describe the unique properties of the mitochondrial intermembrane space (IMS) and its role in apoptosis signalling. We delineate the current models of mitochondrial outer membrane permeabilization (MOMP) during apoptosis and highlight the role of single cell imaging studies in understanding the kinetics of this process. Finally, we will discuss the individual IMS proteins that are released during MOMP and their respective role in the initiation of caspase-dependent and caspase-independent apoptosis.
- Published
- 2016
17. Dimerization of Smac is crucial for its mitochondrial retention by XIAP subsequent to mitochondrial outer membrane permeabilization
- Author
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Markus Rehm, Jennifer C. Lennon, Jordi Sebastià, Lorna Flanagan, and Maria Eugenia Delgado
- Subjects
Recombinant Fusion Proteins ,Mitochondrial outer membrane permeabilization (MOMP) ,X-Linked Inhibitor of Apoptosis Protein ,Apoptosis ,Mitochondrion ,Inhibitor of apoptosis ,Permeability ,Mitochondrial Proteins ,03 medical and health sciences ,0302 clinical medicine ,Single-cell analysis ,Cell Line, Tumor ,Humans ,Molecular Biology ,Caspase ,030304 developmental biology ,0303 health sciences ,biology ,Activator (genetics) ,Intracellular Signaling Peptides and Proteins ,Cell Biology ,Second mitochondria-derived activator of caspases (Smac) ,Mitochondria ,XIAP ,Cell biology ,Protein Transport ,Cytosol ,030220 oncology & carcinogenesis ,Mitochondrial Membranes ,Time-lapse live cell imaging ,biology.protein ,x-Linked inhibitor of apoptosis protein (XIAP) ,Protein Multimerization ,biological phenomena, cell phenomena, and immunity ,Apoptosis Regulatory Proteins ,Protein Binding - Abstract
Following the apoptotic permeabilization of the outer mitochondrial membrane, the inter-membrane space protein second mitochondria-derived activator of caspases (Smac) is released into the cytosol. Smac efficiently promotes apoptosis by antagonizing x-linked inhibitor of apoptosis protein (XIAP), an inhibitor of caspases-9, -3, and -7, via a short NH(2)-terminal inhibitor of apoptosis protein (IAP) binding motif (AVPI). Native Smac dimerizes to form a highly stable and inflexible elongated arch, however, a functional role for this outstretched structure so far remained unknown. Using time-lapse single-cell imaging of DLD-1 and HCT-116 colon cancer cells, we here demonstrate that upon mitochondrial outer membrane permeabilization physiological expression levels of XIAP are sufficient to selectively prolong the release of dimeric but not monomeric Smac. Elevating the expression of XIAP further extended the release duration of dimeric Smac and resulted in the mitochondrial retention of a significant proportion of the Smac pool. In contrast, monomeric Smac was always fully released and the release kinetics were not affected by altered XIAP expression. Our findings therefore indicate that the dimerization of Smac is critical for the XIAP-mediated retention of Smac at or inside the mitochondria. This article is part of a Special Issue entitled: 11th European Symposium on Calcium.
- Published
- 2011
18. Patient-derived glioblastoma cells show significant heterogeneity in treatment responses to the inhibitor-of-apoptosis-protein antagonist birinapant
- Author
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David W. Murray, Andrew W. Boyd, Bryan W. Day, Amanda Tivnan, Annette T. Byrne, Jochen H. M. Prehn, Zaitun Zakaria, Lorna Flanagan, Donat Kögel, Donncha F. O’Brien, Brett W. Stringer, Manuela Salvucci, and Markus Rehm
- Subjects
0301 basic medicine ,Cancer Research ,Programmed cell death ,Indoles ,Cell Survival ,Dacarbazine ,Blotting, Western ,Apoptosis ,Mice, SCID ,temozolomide ,Biology ,In Vitro Techniques ,Inhibitor of apoptosis ,Flow cytometry ,Inhibitor of Apoptosis Proteins ,03 medical and health sciences ,Mice ,In vivo ,Mice, Inbred NOD ,Cell Line, Tumor ,Antineoplastic Combined Chemotherapy Protocols ,medicine ,Animals ,Humans ,Microscopy, Phase-Contrast ,Caspase 8 ,Temozolomide ,medicine.diagnostic_test ,Brain Neoplasms ,glioblastoma ,Dipeptides ,Flow Cytometry ,Xenograft Model Antitumor Assays ,birinapant ,Cell biology ,030104 developmental biology ,Oncology ,Cell culture ,Drug Resistance, Neoplasm ,Cancer research ,Translational Therapeutics ,Neoplasm Transplantation ,medicine.drug - Abstract
Background: Resistance to temozolomide (TMZ) greatly limits chemotherapeutic effectiveness in glioblastoma (GBM). Here we analysed the ability of the Inhibitor-of-apoptosis-protein (IAP) antagonist birinapant to enhance treatment responses to TMZ in both commercially available and patient-derived GBM cells. Methods: Responses to TMZ and birinapant were analysed in a panel of commercial and patient-derived GBM cell lines using colorimetric viability assays, flow cytometry, morphological analysis and protein expression profiling of pro- and antiapoptotic proteins. Responses in vivo were analysed in an orthotopic xenograft GBM model. Results: Single-agent treatment experiments categorised GBM cells into TMZ-sensitive cells, birinapant-sensitive cells, and cells that were insensitive to either treatment. Combination treatment allowed sensitisation to therapy in only a subset of resistant GBM cells. Cell death analysis identified three principal response patterns: Type A cells that readily activated caspase-8 and cell death in response to TMZ while addition of birinapant further sensitised the cells to TMZ-induced cell death; Type B cells that readily activated caspase-8 and cell death in response to birinapant but did not show further sensitisation with TMZ; and Type C cells that showed no significant cell death or moderately enhanced cell death in the combined treatment paradigm. Furthermore, in vivo, a Type C patient-derived cell line that was TMZ-insensitive in vitro and showed a strong sensitivity to TMZ and TMZ plus birinapant treatments. Conclusions: Our results demonstrate remarkable differences in responses of patient-derived GBM cells to birinapant single and combination treatments, and suggest that therapeutic responses in vivo may be greatly affected by the tumour microenvironment.
- Published
- 2015
19. High levels of X-linked Inhibitor-of-Apoptosis Protein (XIAP) are indicative of radio chemotherapy resistance in rectal cancer
- Author
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Joan Kehoe, Elaine W. Kay, Jochen H. M. Prehn, Orna Bacon, Deborah A. McNamara, Joanna Fay, Andreas U. Lindner, Joseph Deasy, and Lorna Flanagan
- Subjects
Adult ,Male ,Neoadjuvant radio chemotherapy ,Oncology ,Antimetabolites, Antineoplastic ,medicine.medical_specialty ,Colorectal cancer ,Ubiquitin-Protein Ligases ,medicine.medical_treatment ,Apoptosis ,X-Linked Inhibitor of Apoptosis Protein ,Inhibitor of apoptosis ,Radiation Tolerance ,Inhibitor of Apoptosis Proteins ,Mitochondrial Proteins ,Internal medicine ,Biomarkers, Tumor ,Humans ,Medicine ,Radiology, Nuclear Medicine and imaging ,Rectal cancer ,Neoadjuvant therapy ,Aged ,Rectal Neoplasms ,business.industry ,Research ,Intracellular Signaling Peptides and Proteins ,Chemoradiotherapy ,Middle Aged ,medicine.disease ,Baculoviral IAP Repeat-Containing 3 Protein ,Neoadjuvant Therapy ,Neoplasm Proteins ,XIAP ,Gene Expression Regulation, Neoplastic ,Radiation therapy ,Drug Resistance, Neoplasm ,Radiology Nuclear Medicine and imaging ,Fluorouracil ,Cancer research ,Female ,Apoptosis Regulatory Proteins ,business ,medicine.drug - Abstract
Background The mainstay of treatment in rectal cancer is neoadjuvant radio chemotherapy prior to surgery, in an attempt to downstage the tumour, allowing for more complete removal during surgery. In 40 % of cases however, this neoadjuvant radio chemotherapy fails to achieve tumour regression, partly due insufficient apoptosis signaling. X-linked Inhibitor of Apoptosis Protein (XIAP) is an anti-apoptotic protein that has been reported to contribute to disease progression and chemotherapy resistance. Methods We obtained rectal biopsy normal and matched tumour tissue from 29 rectal cancer patients with varying degrees of tumour regression, and using Western blot, examined anti-apoptotic XIAP and pro-apoptotic Smac protein levels in these tissues, with the aim to examine whether disturbed XIAP/Smac levels may be an indicator of neoadjuvant radio chemotherapy resistance. Expression of inhibitor of apoptosis proteins cIAP-1 and cIAP-2 was also examined. Results We found that levels of XIAP increased in accordance with the degree of radio chemotherapy resistance of the tissue. Levels of this protein were also significantly higher in tumour tissue, compared to matched normal tissue in highly resistant tissue. In contrast, Smac protein levels did not increase with radio chemotherapy resistance, and the protein was similarly expressed in normal and tumour tissue, indicating a shift in the balance of these proteins. Post treatment surgical resection tissue was available for 8 patients. When we compared matched tissue pre- and post- radio chemotherapy we found that XIAP levels increased significantly during treatment in both normal and tumour tissue, while Smac levels did not change. cIAP-1 and cIAP-2 levels were not differentially expressed in varying degrees of radio chemotherapy resistance, and neoadjuvant therapy did not alter expression of these proteins. Conclusion These data indicate that disturbance of the XIAP/Smac balance may be a driver of radio chemotherapy resistance, and hence high levels of XIAP may be a useful indicator of neoadjuvant radio chemotherapy resistance in rectal cancer. Moreover, as XIAP levels increase with radio chemotherapy it is possible that a subset of more resistant tumour cells survive this treatment and may be resistant to further adjuvant treatment. Patients with resistant tumours highly expressing XIAP may benefit from alternative treatment strategies, such as Smac mimetics post neoadjuvant radio chemotherapy.
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- 2015
20. Abstract 4924: Retrospective evaluation of a system model of the BCL2 family of proteins as a predictive and prognostic biomarker for the clinical outcome of stage II-IV colorectal cancer patients
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Andreas U. Lindner, Alexa Resler, Elaine W. Kay, Orna Bacon, Naser Monsefi, Pierre Laurent-Puig, Clare Morgan, Patrick G. Johnston, Mattia Cremona, Richard H. Wilson, Sarah Curry, Jochen H. M. Prehn, Bryan T. Hennessy, Manuel Salto-Tellez, Sophie Camilleri-Broët, Robert O'Byrne, Lorna Flanagan, Deborah A. McNamara, Michael Stuehler, Sandra Van Schaeybroeck, and Manuela Salvucci
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Oncology ,Cancer Research ,medicine.medical_specialty ,Chemotherapy ,Colorectal cancer ,business.industry ,medicine.medical_treatment ,Cancer ,medicine.disease ,Oxaliplatin ,Surgery ,Clinical trial ,FOLFOX ,Internal medicine ,Cohort ,medicine ,Stage (cooking) ,business ,medicine.drug - Abstract
With 1.4 million new cases every year, colorectal cancer (CRC) is the fourth most common cancer worldwide [Globocan 2012, WHO]. Despite therapeutic advances and improvements in overall care, TNM staging remains the best prognostic indicator for CRC patients’ clinical outcomes and is pivotal for deciding on use of adjuvant chemotherapy after resection of the tumour. Adjuvant chemotherapy is not recommended for many stage II patients and mostly high-risk patients receive chemotherapy. However, there is a lack of robust biomarkers for identifying patient response to chemotherapy, recurrence and mortality risk. We developed a system model of the BCL2 family of proteins (DR_MOMP) to assess the sensitivity of cells to genotoxic stress and to induce apoptosis triggered by chemotherapy. It calculates the stress dose required to induce mitochondrial outer membrane permeabilization (MOMP) based on absolute protein levels and the interaction of pro- and anti-apoptotic BCL2 family proteins. Cells predicted to require a high stress dose showed decreased cell death rates after being exposed to 5FU and Oxaliplatin. Profiles of BAK, BAX, BCL2, BCL(X)L and MCL1 were determined by Reverse Phase Protein Array (RPPA) technology in FFPE primary tumours collected from two distinct cohorts: stage III CRC patients who underwent adjuvant 5FU-based chemotherapy (n = 128), and stage II CRC patients from a completed clinical trial with patients randomised to adjuvant 5FU-based chemotherapy or observation only (n = 138). Protein profiles were inputted into DR_MOMP to determine chemotherapy sensitivity and to classify patients into high- or low risk categories. Findings were validated on the TCGA COAD cohort using both protein (RPPA) and mRNA (SeqV2 RSEM) expression data. Stage II patients classified as high-risk by DR_MOMP and randomised to observation only had approximately 2-fold increased risk of death from CRC compared to those classified as low-risk or received chemotherapy (HR 2.4; 95% CI 1.2-4.8; p-value = 0.0199). Among stage III patients treated with FOLFOX, those classified as high- versus low-risk had a more than 10-fold increased risk of death from CRC (HR 10.6; 95% CI 2.4-46.3; p-value < 0.0001). We validated this finding in 261 stage II-IV patients of the TCGA COAD cohort (HR 10.6; 95% CI 1.2-12.5; p-value = 0.0125). DR_MOMP predicted mortality risk independent of TNM staging and KRAS mutation status. Our system delivers a novel predictive and prognostic biomarker that could be combined with TNM staging when assessing initial risk and subsequent clinical management of CRC patients. Citation Format: Andreas U. Lindner, Manuela Salvucci, Mattia Cremona, Naser Monsefi, Sarah Curry, Clare Morgan, Alexa Resler, Robert O’Byrne, Orna Bacon, Michael Stuehler, Lorna Flanagan, Richard Wilson, Patrick G. Johnston, Manuel Salto-Tellez, Sophie Camilleri-Broët, Deborah A. McNamara, Bryan T. Hennessy, Elaine W. Kay, Pierre Laurent-Puig, Sandra Van Schaeybroeck, Jochen H.M. Prehn. Retrospective evaluation of a system model of the BCL2 family of proteins as a predictive and prognostic biomarker for the clinical outcome of stage II-IV colorectal cancer patients. [abstract]. In: Proceedings of the 107th Annual Meeting of the American Association for Cancer Research; 2016 Apr 16-20; New Orleans, LA. Philadelphia (PA): AACR; Cancer Res 2016;76(14 Suppl):Abstract nr 4924.
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- 2016
21. Low levels of Caspase-3 predict favourable response to 5FU-based chemotherapy in advanced colorectal cancer: Caspase-3 inhibition as a therapeutic approach
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S Curry, Heike Bantel, Deborah A. McNamara, Jochen H. M. Prehn, Elaine W. Kay, Orna Bacon, Katharina John, K C Boland, M Meyer, Joanna Fay, Lorna Flanagan, Heiko Duessmann, and H Schulze-Bergkamen
- Subjects
0301 basic medicine ,Male ,Cancer Research ,Pathology ,medicine.medical_specialty ,Antimetabolites, Antineoplastic ,Colorectal cancer ,Immunology ,Caspase 3 ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,Paracrine signalling ,0302 clinical medicine ,medicine ,Humans ,Caspase ,Cell Proliferation ,Tissue microarray ,TUNEL assay ,biology ,Cell Biology ,medicine.disease ,Immunohistochemistry ,030104 developmental biology ,Terminal deoxynucleotidyl transferase ,Apoptosis ,Tissue Array Analysis ,030220 oncology & carcinogenesis ,biology.protein ,Cancer research ,Original Article ,Female ,Fluorouracil ,Colorectal Neoplasms - Abstract
Colorectal cancer (CRC) is one of the most common cancers in the Western world. 5-Fluorouracil (5FU)-based chemotherapy (CT) remains the mainstay treatment of CRC in the advanced setting, and activates executioner caspases in target cells. Executioner caspases are key proteins involved in cell disassembly during apoptosis. Activation of executioner caspases also has a role in tissue regeneration and repopulation by stimulating signal transduction and cell proliferation in neighbouring, non-apoptotic cells as reported recently. Tissue microarrays (TMAs) consisting of tumour tissue from 93 stage II and III colon cancer patients were analysed by immunohistochemistry. Surprisingly, patients with low levels of active Caspase-3 had an increased disease-free survival time. This was particularly pronounced in patients who received 5FU-based adjuvant CT. In line with this observation, lower serum levels of active Caspase-3 were found in patients with metastasised CRC who revealed stable disease or tumour regression compared with those with disease progression. The role of Caspase-3 in treatment responses was explored further in primary human tumour explant cultures from fresh patient tumour tissue. Exposure of explant cultures to 5FU-based CT increased the percentage of cells positive for active Caspase-3 and Terminal Deoxynucleotidyl Transferase dUTP Nick end Labelling (TUNEL), but also the expression of regeneration and proliferation markers β-Catenin and Ki-67, as well as cyclooxygenase-2 (COX-2). Of note, selective inhibition of Caspase-3 with Ac-DNLD-CHO, a selective, reversible inhibitor of Caspase-3, significantly reduced the expression of proliferation markers as well as COX-2. Inhibition of COX-2 with aspirin or celecoxib did not affect Caspase-3 levels but also reduced Ki-67 and β-Catenin levels, suggesting that Caspase-3 acted via COX-2 to stimulate cell proliferation and tissue regeneration. This indicates that low levels of active Caspase-3 may represent a new predictor of CT responsiveness, and inhibition of Caspase-3, or antagonising downstream effectors of Caspase-3 paracrine signalling, such as COX-2 may improve patient outcomes following CT in advanced CRC.
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- 2016
22. Systems Analysis of Cancer Cell Heterogeneity in Caspase-dependent Apoptosis Subsequent to Mitochondrial Outer Membrane Permeabilization*
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Jochen H. M. Prehn, Jasmin Schmid, Gerhardt J. Boukes, Lorna Flanagan, Andreas U. Lindner, Markus Rehm, Heinrich J. Huber, Heiko Düssmann, and Carla O’Connor
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Systems Analysis ,Cell ,Apoptosis ,X-Linked Inhibitor of Apoptosis Protein ,Inhibitor of apoptosis ,Biochemistry ,Caspase-Dependent Apoptosis ,Gene Expression Regulation, Enzymologic ,Substrate Specificity ,HeLa ,Cell Line, Tumor ,Neoplasms ,medicine ,Fluorescence Resonance Energy Transfer ,Humans ,Molecular Biology ,Caspase ,Microscopy ,Models, Statistical ,biology ,Cell Biology ,biology.organism_classification ,Prognosis ,Caspase 9 ,Cell biology ,XIAP ,Gene Expression Regulation, Neoplastic ,Kinetics ,medicine.anatomical_structure ,Caspases ,Cancer cell ,Mitochondrial Membranes ,biology.protein ,Monte Carlo Method ,HeLa Cells - Abstract
Deregulation of apoptosis is a hallmark of carcinogenesis. We here combine live cell imaging and systems modeling to investigate caspase-dependent apoptosis execution subsequent to mitochondrial outer membrane permeabilization (MOMP) in several cancer cell lines. We demonstrate that, although most cell lines that underwent MOMP also showed robust and fast activation of executioner caspases and apoptosis, the colorectal cancer cell lines LoVo and HCT-116 Smac(-/-), similar to X-linked inhibitor of apoptosis protein (XIAP)-overexpressing HeLa (HeLa XIAP(Adv)) cells, only showed delayed and often no caspase activation, suggesting apoptosis impairment subsequent to MOMP. Employing APOPTO-CELL, a recently established model of apoptosis subsequent to MOMP, this impairment could be understood by studying the systemic interaction of five proteins that are present in the apoptosis pathway subsequent to MOMP. Using APOPTO-CELL as a tool to study detailed molecular mechanisms during apoptosis execution in individual cell lines, we demonstrate that caspase-9 was the most important regulator in DLD-1, HCT-116, and HeLa cells and identified additional cell line-specific co-regulators. Developing and applying a computational workflow for parameter screening, systems modeling identified that apoptosis execution kinetics are more robust against changes in reaction kinetics in HCT-116 and HeLa than in DLD-1 cells. Our systems modeling study is the first to draw attention to the variability in cell specific protein levels and reaction rates and to the emergent effects of such variability on the efficiency of apoptosis execution and on apoptosis impairment subsequent to MOMP. ispartof: Journal of Biological Chemistry vol:287 issue:49 pages:41546-41559 ispartof: location:United States status: published
- Published
- 2012
23. Proteasome Inhibition Can Impair Caspase-8 Activation upon Submaximal Stimulation of Apoptotic Tumor Necrosis Factor-related Apoptosis Inducing Ligand (TRAIL) Signaling*
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Markus Rehm, Jochen H. M. Prehn, Lorna Flanagan, Maike A. Laussmann, Bartłomiej Tomiczek, Christian T. Hellwig, Heinrich J. Huber, and Egle Passante
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Programmed cell death ,Proteasome Endopeptidase Complex ,Antineoplastic Agents ,Apoptosis ,Caspase 8 ,Biochemistry ,Bortezomib ,TNF-Related Apoptosis-Inducing Ligand ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Epoxomicin ,medicine ,Humans ,Protease Inhibitors ,Molecular Biology ,Caspase ,030304 developmental biology ,0303 health sciences ,biology ,fungi ,food and beverages ,Cell Biology ,Boronic Acids ,3. Good health ,Cell biology ,Enzyme Activation ,chemistry ,Proteasome ,030220 oncology & carcinogenesis ,Pyrazines ,biology.protein ,Signal transduction ,Oligopeptides ,Proteasome Inhibitors ,medicine.drug ,Signal Transduction ,HeLa Cells - Abstract
Tumor necrosis factor-related apoptosis inducing ligand (TRAIL) can induce extrinsic apoptosis, resulting in caspase-8 activation, but may also initiate transcription-dependent prosurvival signaling. Proteasome inhibitors were suggested to promote TRAIL signal transduction through the death-inducing signaling complex (DISC) by modulating the relative abundance of core DISC components, thereby enhancing caspase-8 activation and apoptosis. To test this hypothesis, we quantified the changes in DISC protein levels as an early consequence of proteasome inhibition in HeLa cervical cancer cells and, based on these data, mathematically modeled the proapoptotic TRAIL signaling toward caspase-8 activation. Modeling results surprisingly suggested that caspase-8 activation might be delayed in presence of proteasome inhibitors, in particular at submaximal TRAIL doses. Subsequent FRET-based single cell time-lapse imaging at conditions where transcription dependent prosurvival signaling was blocked confirmed this hypothesis: caspase-8 activity was delayed by hours in the presence of proteasome inhibitors epoxomicin or bortezomib. Corresponding delays were detected for effector caspase processing and cell death. Contrary to current models, we therefore provide evidence that synergies between TRAIL and proteasome inhibitors do not result from changes in the levels of core DISC signaling proteins.
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- 2012
24. Apoptosis repressor with caspase recruitment domain, a multifunctional modulator of cell death
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Markus Rehm, Lorna Flanagan, and Agnieszka H. Ludwig-Galezowska
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Programmed cell death ,Repressor ,Reviews ,Inhibitor of apoptosis ,cardiophysiology ,03 medical and health sciences ,Animals ,Humans ,cancer ,Caspase ,030304 developmental biology ,Inhibitor of apoptosis domain ,0303 health sciences ,biology ,NLRP1 ,apoptosis repressor with caspase recruitment domain (ARC) ,030302 biochemistry & molecular biology ,Intrinsic apoptosis ,apoptosis ,Cell Biology ,Receptors, Death Domain ,Cell biology ,cell death ,Gene Expression Regulation ,caspases ,Apoptosis ,Organ Specificity ,Bax ,biology.protein ,Molecular Medicine ,Apoptosis Regulatory Proteins - Abstract
Apoptosis repressor with caspase recruitment domain (ARC) is a highly potent and multifunctional inhibitor of apoptosis that is physiologically expressed predominantly in post-mitotic cells such as cardiomyocytes, skeletal muscle cells and neurons. ARC was also found to be up-regulated in many forms of malignant tumours. ARC impairs the cellular apoptotic responsiveness to a wide range of stresses and insults, including extrinsic apoptosis initiation via death receptor ligands, dysregulation of cellular Ca2+ homeostasis and endoplasmatic reticulum (ER) stress, genotoxic drugs, ionizing radiation, oxidative stress and hypoxia. ARC is subject to both transcriptional and post-translational regulation and exhibits its function through a multitude of molecular interactions with upstream transducers of apoptosis signals. This review summarizes, structures and comments on the published knowledge regarding ARC and its roles in modulating apoptotic cell death responsiveness in physiological and pathophysiological contexts.
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- 2010
25. Paracrine control of tissue regeneration and cell proliferation by Caspase-3
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Jochen H. M. Prehn, Lorna Flanagan, and Karen Boland
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Cancer Research ,Immunology ,Paracrine Communication ,Caspase 3 ,Review ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,Paracrine signalling ,0302 clinical medicine ,stem cells ,Animals ,Homeostasis ,Humans ,cancer ,Caspase ,Tissue homeostasis ,030304 developmental biology ,0303 health sciences ,biology ,Regeneration (biology) ,apoptosis ,Cell Biology ,Cell biology ,cell proliferation ,caspases ,regeneration ,030220 oncology & carcinogenesis ,Cancer cell ,biology.protein ,Intercellular Signaling Peptides and Proteins ,Inflammation Mediators ,Signal transduction - Abstract
Executioner caspases such as Caspase-3 and Caspase-7 have long been recognised as the key proteases involved in cell demolition during apoptosis. Caspase activation also modulates signal transduction inside cells, through activation or inactivation of kinases, phosphatases and other signalling molecules. Interestingly, a series of recent studies have demonstrated that caspase activation may also influence signal transduction and gene expression changes in neighbouring cells that themselves did not activate caspases. This review describes the physiological relevance of paracrine Caspase-3 signalling for developmental processes, tissue homeostasis and tissue regeneration, and discusses the role of soluble factors and microparticles in mediating these paracrine activities. While non-cell autonomous control of tissue regeneration by Caspase-3 may represent an important process for maintaining tissue homeostasis, it may limit the efficiency of current cancer therapy by promoting cell proliferation in those cancer cells resistant to radio- or chemotherapy. We discuss recent evidence in support of such a role for Caspase-3, and discuss its therapeutic implication.
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- 2013
26. Characterisation of E12/E47 expression in colorectal cancer
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Lorna Flanagan, AS Chugha, F Bane, Beatrice D'Orsi, Leonie S. Young, and J.H.M. Prehn
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Text mining ,Expression (architecture) ,Colorectal cancer ,business.industry ,Poster Presentation ,medicine ,General Medicine ,Computational biology ,medicine.disease ,business ,Data science ,General Biochemistry, Genetics and Molecular Biology - Full Text
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