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River contamination is due to a chemical mixture of point and diffuse pollution, which can compromise water quality. Polycyclic Aromatic Hydrocarbons (PAHs) and emerging compounds such as pharmaceuticals and antibiotics are frequently found in rivers flowing through big cities. This work evaluated the presence of fifteen priority PAHs, eight pharmaceuticals including the antibiotics ciprofloxacin (CIP) and sulfamethoxazole (SMX), together with their main antibiotic resistant genes (ARGs) and the structure of the natural bacterioplankton community, in an urbanized stretch of the river Danube. SMX and diclofenac were the most abundant chemicals found (up to 20 ng/L). ARGs were also found to be detected as ubiquitous contaminants. A principal component analysis of the overall microbiological and chemical data revealed which contaminants were correlated with the presence of certain bacterial groups. The highest concentrations of naphthalene were associated with Deltaproteobacteria and intI1 gene. Overall, the most contaminated site was inside the city and located immediately downstream of a wastewater treatment plant. However, both the sampling points before the river reached the city and in its southern suburban area were still affected by emerging and legacy contamination. The diffuse presence of antibiotics and ARGs causes particular concern because the river water is used for drinking purposes.

Hydrocarbons occur in fossil fuels such as crude oil and consist mainly of hydrogen and carbon. Although they are natural chemicals, crude oil refining results in commercial products with new physico-chemical properties, which can increase their complexity and toxicity, and hamper their degradation. The presence of biodiverse natural microbial communities is a prerequisite for an effective homeostatic response to the various hydrocarbons, that contaminate ecosystems. However, their removal depends on the compartment contaminated (water, sediment, soil), their molecular weight, and their toxicity not hampering microbial activity. This paper reports different bacterial species involved in the biodegradation of aliphatic and aromatic hydrocarbons. Hydrocarbon contamination is generally due to the co-presence of a mixture of these chemicals, and their removal from the environment cannot rely on only a single species but generally requires bacterial consortia. Versatile bacterial metabolism relies on specific genes encoding the key enzymes involved in the peripheral metabolic and central metabolic pathways for degrading aliphatic and polycyclic aromatic hydrocarbons. Although microbial metabolism can have the potential for natural attenuation of these contaminants, hydrocarbon bioremediation, through biostimulation (e.g., use of surfactants, plants, earthworms, and nanoparticles) and bioaugmentation, can be a valid tool for removing them from actually contaminated soil, freshwater, groundwater, and seawater.

The anionic surfactant sodium lauryl ether sulfate (SLES) is the main component of most commercial foaming agents (FAs) used in the excavation of highway and railway tunnels with Earth pressure balance-tunnel boring machines (EPB-TBMs). Several hundreds of millions of tons of spoil material, consisting of soil mixed with FAs, are produced worldwide, raising the issue of their handling and safe disposal. Reducing waste production and reusing by-products are the primary objectives of the “circular economy,” and in this context, the biodegradation of SLES becomes a key question in reclaiming excavated soils, especially at construction sites where SLES degradation on the spot is not possible because of lack of space for temporary spoil material storage. The aim of the present work was to apply a bacterial consortium (BC) of SLES degraders to spoil material excavated with an EPB-TBM and coming from a real construction site. For this purpose, the BC capability to accelerate SLES degradation was tested. Preliminary BC growth, degradation tests, and ecotoxicological evaluations were performed on a selected FA. Subsequently, a bioaugmentation experiment was conducted; and the microbial abundance, viability, and SLES concentrations in spoil material were evaluated over the experimental time (0.5, 3, 6, 24, 48, and 144 h). Moreover, the corresponding aqueous elutriates were extracted from all the soil samples and analyzed for SLES concentration and ecotoxicological evaluations with the bacterium Aliivibrio fischeri. The preliminary experiments showed the BC capability to grow under 14 different concentrations of the FA. The maximum BC growth rates and degradation efficiency (100%) were achieved with initial SLES concentrations of 125, 250, and 500 mg/L. The subsequent bioaugmentation of the spoil material with BC significantly (sixfold) improved the degradation time of SLES (DT50 1 day) compared with natural attenuation (DT50 6 days). In line with this result, neither SLES residues nor toxicity was recorded in the soil extracts showing the spoil material as a by-product promptly usable. The bioaugmentation with BC can be a very useful for cleaning spoil material produced in underground construction where its temporary storage (for SLES natural biodegradation) is not possible.

River pollution from different sources can affect ecosystems in different ways with consequences on water quality for both biota and human health. The River Danube was selected to perform chemical and biological analyses. The river was sampled at three different points, one inside Budapest and two just outside. Water samples were collected twice in the same year (April and November 2017) in order to determine metal concentrations, occurrence of ubiquitous contaminants such as Polycyclic Aromatic Hydrocarbons (PAHs) and some not-yet-regulated pharmaceuticals (17β-estradiol, 17α-ethinylestradiol, estrone, fenoprofen, naproxen, ibuprofen, gemfibrozil, sulfamethoxazole and ciprofloxacin). Moreover, the structure of the natural microbial community was also analysed in terms of total microbial abundance and identification of the main bacterial groups by the Fluorescence In Situ method. Finally, the same water samples were tested to assess their possible estrogenic effects using the yeast estrogenic screen (YES). The results show diffuse residual concentrations of both PAHs and pharmaceuticals in the river stretch investigated, with the highest values in April (in line with a lower rainfall input) and at the sampling site inside the city of Budapest. At this latter point, the natural microbial community was less abundant than in the other sites, suggesting detrimental effects of the overall contaminants on its structure. Finally, an estrogenic activity was found in all water samples analysed with higher average values in line with higher amounts of contaminants in the April sampling.

DDE (2,2-bis (p-chlorophenyl)-1,1-dichloroetylene) is a very persistent and bioaccumulative pesticide and its residues are continuously found in the environment. Among the green remediation strategies for soil recovery, terrestrial Microbial Fuel Cells (MFC) are arousing great interest in scientific community. MFCs transform energy stored in the chemical bonds of organic compounds into electrical energy thanks to exo-electrogen microorganisms naturally occurring in soil, which catalyse oxidation and reduction reactions in the area between two graphite electrodes. This work reports preliminary data on the use of MFCs for promoting soil decontamination from DDE. Several experimental conditions (e.g. addition of compost and open/closed circuit) were applied for assessing how to improve MFC performance in favouring DDE removal. MFCs promoted a significant DDE removal (39%) after 2 months, while at the same time any pesticide decrease was observed in the batch condition. Compost addition stimulated microbial activity and improved MFC performance for a longer time.

Fagus sylvatica L. is widely distributed across Europe thanks to its high adaptability in a wide variety of soils and climate. Microbial communities are essential for maintaining forest soil quality and are responsible for forest ecosystem functioning; the ability of soil microorganisms to respond to abiotic stressors (e.g., organic carbon losses, water scarcity, temperature changes) is crucial under ongoing environmental changes and also supports tree health. In this study, soil samples were collected from pure beech plots as part of the COST Action project CLIMO to find differences in microbial community characteristics and evaluate the effects of soil properties on microbial communities across gradients of elevation, latitude, and longitude. Positive relationships were found between organic carbon content and both microbial abundance and dehydrogenase activity. Dehydrogenase and catalase activities were elevation-correlated and microbial activities were longitude-correlated. In the most southern beech plot, the microbial community was abundant and displayed high activities. This shows that microbial communities could help tree populations to better adapt to predicted changes in environmental conditions in the future. We suggest that research into forest health and beech performance should also test soil microbial enzymatic activity, particularly under changing climate conditions, to assist in identifying adaptation strategies.

Background: Due to their widespread use in industrial applications in recent decades, Polychlorobiphenyls (PCBs) and heavy metals (HMs) are the most common soil contaminants worldwide, posing a risk for both ecosystems and human health.Results: a poplar-assisted bioremediation strategy has been applied for more than four years to a historically contaminated area (PCBs and HMs) in Southern Italy using the Monviso poplar clone. This clone was effective in promoting a decrease in all contaminants and an increase in soil quality in terms of organic carbon and microbial abundance. Moreover, a significant shift in the structure and functioning of the belowground microbial community was also observed when analysing both DNA and cDNA sequencing. In fact, an increase in bacterial genera belonging to Proteobacteria and able to degrade PCBs and resist HMs was observed. Moreover, the functional profiling of the microbial community predicted by PICRUSt2 made it possible to identify several genes associated with PCB transformation (e.g. bphAa, bphAb, bphB, bphC), response to HM oxidative stress (e.g. catalase, superoxide reductase, peroxidase) and HM uptake and expulsion (e.g. ABC transporters).Conclusions: This work demonstrated the effectiveness of the poplar clone used in stimulating the natural belowground microbial community to remove contaminants (phyto-assisted bioremediation) and improve the overall soil quality. It is a practical example of a nature based solution involving synergic interactions between plants and the belowground microbial community.

Sodium lauryl ether sulphate (SLES) is the main chemical component in several lubricant products used for soil conditioning in the mechanized excavation industry using Earth Pressure Balance-Tunnel Boring Machines. During the tunnelling process, huge amounts of excavated soil are produced and the SLES presence can affect the subsequent re-use of this material as a by-product. Currently, there is still no regulatory indication of reliable and sensitive bioassays for monitoring soil quality during the excavation process. The main objective of this work was to verify if the Vibrio fischeri screening test was suitable as a consistent and precautionary tool for this specific purpose. Firstly, the ecotoxicity (EC20 and EC50) of the SLES standard solution and three commercial products (SLES content from 10 to 50%) were evaluated to select the most environmental friendly product. Subsequently, soil samples from about 2 years of tunnelling in a real construction site, conditioned with the selected product, were evaluated for their environmental compatibility with the prescriptions of an Italian site-specific protocol. The latter established 2 mg/L as a threshold value for SLES concentration in soil water extracts and a no toxic response (2 mg/L. The toxicity was directly related to SLES concentration, indicating that the V. fischeri test and the SLES analyses are suitable tools for assessing excavated soil as a by-product, ensuring its safe reuse in accordance with a green production process (circular economy).

The widespread detection of antibiotics in terrestrial and aquatic systems has engendered significant scientific and regulatory concern. Overall, knowledge concerning the ecotoxicology and sub-lethal effects in water is scarce, but some experimental studies show that antibiotics can induce pathogen resistance and they can also have detrimental effects on natural microbial communities and their key functions. The main aim of this study was to investigate the occurrence of the biodegradation and photodegradation processes of the fluoroquinolone ciprofloxacin (CIP) in the River Tiber waters, in a stretch highly impacted from human pressure. Two set of microcosms consisting of river water containing the natural microbial community and treated with 500 μg/L of CIP in absence or presence of UV-light were performed. Moreover, some microcosms were filled with river water previously sterilized and then treated with the antibiotic. The combined experimental set made it possible to evaluate if the antibiotic CIP could be photodegraded and/or biodegraded. CIP residual concentrations were measured over time by using HPLC coupled to fluorescence detection (FLD) and the effects of the antibiotic on the natural microbial community were assessed in terms of live cell abundance. The key role of light in CIP disappearance was confirmed, but also its biodegradation in natural river water was demonstrated. In fact, differently from other experiments we found a higher degradation rate (DT 50 = 10.4 d), in presence of both light and the natural river bacterial populations than in the same sterilized river water (DT 50 = 18.4 d). Moreover, even in the dark, a partial CIP biodegradation was also observed (DT 50 = 177 d). The overall results were supported by the increase in live cell numbers with the decrease of CIP concentrations both in the dark and light condition.

A wide use of foaming agents as lubricants is required in mechanized tunneling. Their main component, the anionic surfactant sodium lauryl ether sulphate (SLES), can remain in residual concentrations in soil debris, influencing their potential reuse as by-product. This study aimed at evaluating the environmental fate and effects of a foaming product used for conditioning soils collected from real excavation sites, in the presence/absence of an anti-clogging polymer, both containing SLES. Soil microcosm experiments were set-up and incubated for 28 days. Over time, soils and their water extracts (elutriates) were collected to perform both ecotoxicological tests (Vibrio fischeri, Lepidium sativum, Eisenia foetida, Hetereocypris incongruens, Danio rerio) and SLES analysis. The results showed that, just after conditioning, SLES did not exert any hazardous effect on the organisms tested except for the bacterium V. fischeri, which was the most sensitive to its presence. However, from day seven the toxic effect on the bacterium was never observed thanks to the SLES decrease in the elutriates (&lt, 2 mg/L). SLES degraded in soils (half-lives from 9 to 25 days) with higher disappearance rates corresponding to higher values of microbial abundances. This study highlights the importance of site-specific studies for assessing the environmental reuse of spoil materials.

There is a growing concern about the simultaneous presence in the environment of different kinds of pollutants, because of the possible synergic or additive effects of chemical mixtures on ecosystems. Chlorpyrifos (CPF) is an organophosphate insecticide extensively used in agricultural practices. The anionic surfactant sodium lauryl ether sulphate (SLES) is the main component of several commercial products, including foaming agents used in underground mechanised excavation. Both compounds are produced and sold in high amounts worldwide and can be found in the environment as soil contaminants. The persistence of SLES and CPF in agricultural soils and their possible effects on the natural microbial community was evaluated in microcosms. The experimental set consisted of soil samples containing the autochthonous microbial community and treated with only SLES (70 mg/kg), only CPF (2 mg/kg) or with a mix of both compounds. Control microcosms (without the contaminants) were also performed. Soil samples were collected over the experimental period (0, 7, 14, 21 and 28 days) and analysed for CPF, SLES and the main metabolite of CPF (3, 5, 6-trichloropyridinol, TCP). The half-life time (DT50) of each parent compound was estimated in all experimental conditions. At the same time, the abundance, activity and structure of the microbial community were also evaluated. The results showed that the co-presence of SLES and CPF did not substantially affect their persistence in soil (DT50 of 11 and 9 days with co-presence and 13 and 10 days, respectively, when alone); however, in the presence of SLES, a higher amount of the metabolite TCP was found. Interestingly, some differences were found in the bacterial community structure, abundance and activity among the various conditions.

8 páginas.- 6 figuras.- 40 referencias, The risks of pollution by polycyclic aromatic hydrocarbons (PAHs) may increase in bioremediated soils as a result of the formation of toxic byproducts and the mobilization of pollutants associated to suspended colloids. In this study, we used the motile and chemotactic bacterium Pseudomonas putida G7 as an experimental model for examining the potential role of bacterial motility in the cometabolism and biosorption of pyrene in a porous medium. For this purpose, we conducted batch and column transport experiments with 14C-labelled pyrene loaded on silicone O-rings, which acted as a passive dosing system. In the batch experiments, we observed concentrations of the 14C-pyrene equivalents well above the equilibrium concentration observed in abiotic controls. This mobilization was attributed to biosorption and cometabolism processes occurring in parallel. HPLC quantification revealed pyrene concentrations well below the 14C-based quantifications by liquid scintillation, indicating pyrene transformation into water-soluble polar metabolites. The results from transport experiments in sand columns revealed that cometabolic-active, motile cells were capable of accessing a distant source of sorbed pyrene. Using the same experimental system, we also determined that salicylate-mobilized cells, inhibited for pyrene cometabolism, but mobilized due to their tactic behavior, were able to sorb the compound and mobilize it by biosorption. Our results indicate that motile bacteria active in bioremediation may contribute, through cometabolism and biosorption, to the risk associated to pollutant mobilization in soils. This research could be the starting point for the development of more efficient, low-risk bioremediation strategies of poorly bioavailable contaminants in soils. © 2020 Elsevier B.V., We thank the Spanish Ministry of Economy, Industry and Competitiveness (CGL2016-77497-R), the Andalusian Government (RNM 2337), and the European Commission (LIFE15 ENV/IT/000396). Joaquim Vila is a Serra Húnter Fellow (Generalitat de Catalunya).