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Increasing global and domestic food trade and required logistics create uncertainties in food safety inspection due to uncertainties in food origins and extensive trade activities. Modern blockchain techniques have been developed to inform consumers of food origins but do not provide food safety information in many cases. A novel food safety tracking and modeling framework for quantifying toxic chemical levels in the food and the food origins was developed. By integrating chemicals' multimedia environment exchange, food web, and source tracking systems, the framework was implemented to identify short-chain chlorinated paraffin (SCCP) contamination of fresh hairtail fish sold by a Walmart supermarket in Xi'an, northwestern China, and sourced in Eastern China Sea coastal waters. The framework was shown to successfully predict SCCP level with a mean of 17.8 ng g

Seepage wells that can convert surface water into groundwater are often constructed near river valleys to obtain more water and lead to smaller drawdown compared with traditional wells. Seepage wells have been widely used, whilst the groundwater and river-level variations caused by seepage wells are still unclear, and numerical models are rarely verified due to the lack of in-situ observational data, which may lead to results that are quite different from the actual conditions. To address those limitations, a large-scale pumping test was carried out near the Yellow River valley in China and a coupled seepage–pipe flow model was established using the exchange yield between the aquifer and pipe as the coupling key in this research. The coupled model was evaluated with in-situ measurement. The field observation showed that both the river and groundwater had a positive response to the pumping of the seepage wells. The simulation results indicated that our model can well estimate the pumping rate and drawdown with root-mean-square deviations of 158.235 m3/d and 0.766 m, respectively. Further, it is also found that the groundwater showed the obvious characteristics of three-dimensional flow under the influence of seepage wells and the maximum drawdown should be less than 15 m to ensure exploitation efficiency. These findings provide important information that can guide the design and construction of seepage wells to improve the rational exploitation of groundwater.

Dense medium component (DMC) is a group component of coal, which is composed of macromolecular skeleton aggregate embedded by small molecules. Previously, the dense medium component skeleton (DMC-S...

Atmospheric emission sources of persistent organic pollutants (POPs) in China's eastern seaboard regions cause heavy POP contamination in the Bohai Sea (BS), China. Because many rivers are emptying into the BS, terrestrial runoff has been considered a dominant pathway of POPs onto the BS. Here, we explored the contribution of atmospheric transport and terrestrial runoff to organophosphorus flame retardants (OPFRs) to the BS by using an atmospheric transport model and a terrestrial runoff model. We examined the sensitivity and response of OPFR in the BS seawater to its atmospheric transport, deposition, and riverine discharge via terrestrial runoff. Both terrestrial runoff and atmospheric transport model simulations reveal that the atmospheric transport and deposition, including dry, wet, and diffusive gaseous deposition, dominate OPFR input into the BS. The total OPFR fluxes entering the BS via the atmospheric pathway and riverine input were 70.4 and 2.8 t/yr in 2013, respectively.

Coal as an important fossil energy has been comprehensively studied in terms of its structure, reactivity, and application. However, there are few publications reported about the formation mechanism of coal. In order to explore the molecular mechanism of the formation of the dense medium component (DMC) aggregate, which is extracted from coal, the molecular model of the DMC scaffold (DMC-S) was constructed based on a number of X-ray photoelectron spectroscopy, 13C NMR, and ultimate analysis. Then, DMC-S was further optimized, and the periodic boundary condition was added for molecular mechanics and molecular dynamics simulation. The DMC-S molecule model with a density of 1.05 g/cm3 and a different number of unit cells was obtained after the aforementioned experiments and simulations. When the unit cell contained 12 DMC-S molecules, the absolute value of electrostatic energy significantly increased and the peripheral branch chains in DMC-S interlaced with each other, forming a compact aggregate. The density and macrosize calculated values are all slightly lower than the true relative values because the presence of minerals or small molecules was not included in the model construction. Despite some unavoidable defects, the comparison between the simulated and experimental results validates the DMC-S aggregate model and lays a solid foundation for an in-depth study of DMC and its reactivity.

Industry relocation under globalization has altered the origins and strength of emission sources of many air pollutants. We develop global emission inventories of polycyclic aromatic hydrocarbons (PAHs) embodied in the production and consumption of goods and services. We implement these inventories within a global atmospheric transport model and simulate spatial-temporal changes in atmospheric concentrations of benzo[α]pyrene (BaP), the most toxic congener in unsubstituted PAHs, and depositions across the Arctic subject to global trade and industry relocation. We show that interregional trade and industry relocation dramatically reduce the atmospheric levels and deposition of BaP in the Arctic. The most significant BaP decline occurs in the European and North American Arctic regions due to attenuated sources in the two well-developed continents proximate to the polar region induced by the relocation of high-PAH pollution industries to many developing countries far from the Arctic. Although BaP emissions embodied in industry relocations in China, India, and South and Southeast Asia resulted in increased BaP contamination in the Asian Arctic, such increases in pollution are minor compared to significant BaP reductions occurring in the European and North American Arctic regions. We find that "North-to-South" industry transfer could reduce trade-related BaP contamination by 60% in the Arctic.

Most emitters of short chain chlorinated paraffins (SCCPs) in China are located in eastern China, posing potential risks to the marine environment and food web. Here we employed a comprehensive atmospheric transport model combined with multiple environmental compartment exchange modules and a marine food web model to simulate levels and risks of SCCPs in the marine environment and fish in the Yellow Sea (YS), East China Sea (ECS), and South China Sea (SCS). Results unveiled a decreasing SCCP level in seawaters and sediments towards offshore. The modeled SCCP total (dry + wet) loadings to the three seawater bodies ranged from 0.0013 to 0.1635 mg/m2/season and gaseous diffusive deposition ranged from 43 to 4443 kg/month. The meteorological factors and secondary emission contributing to seasonal changes in SCCPs were also discussed. A tagging technique was used to trace origins of SCCPs, demonstrating that source proximity contributes most in SCCP contamination to these seawater bodies. Modeled SCCP levels in 5 marine fish in the YS, ECS, and SCS ranged from 23 to 111 ng/g. Our results showed the current SCCP levels in the marine environment and fish did not pose exposure risks to fish consumers for different age groups and genders. However, if consumed fish were harvested and imported from more seriously contaminated seawaters by SCCPs, the estimated dietary intake (EDI) would considerably increase.

As part of the Energy Golden Triangle in northwest China and the largest coal-to-liquids industry in the world, the emission and contamination of fine particles in the Ningdong National Energy and Chemical Industrial Base (NECIB) are unknown. There are also large knowledge gaps in the association of air pollution with coal-to-liquids industry. This paper reports the chemical composition and source apportionment of PM1 and PM2.5 collected at two industrial sites Yinglite (YLT) and Baofeng (BF) from a field campaign during summer 2016 and winter 2017. Major chemical components in PM1 and PM2.5, including carbonaceous aerosols, water-soluble inorganic ions, and metal elements were analyzed. The Positive Matrix Factorization (PMF) model and the ISORROPIA II thermodynamic equilibrium model were used to track possible sources and contributions of these chemical components to the formation of the two fine particles. The results identified four primary sources of the fine particles, including vehicle emissions, biomass burning and waste incineration, the secondary aerosols and coal combustion, and soil dust. The PM1 and PM2.5 concentrations were higher in winter than summer. The summed secondary inorganic and carbonaceous aerosols accounted for 36.1–40.0% of PM2.5 mass. The total mass of chemical components identified in the source apportionment only explained about 64.2 to 72.4% of the PM2.5 mass. These results imply some missing sources in this large-scale coal chemical industry base. A coupled weather forecasting and atmospheric chemistry model WRF-Chem was employed to simulate the PM2.5 mass and concentrations of OC and EC, and to examine the origins of PM2.5 across the NECIB. The modeled concentrations of OC and EC were consistent with the sampled data, but the modeled mass of PM2.5 is lower considerably than the measurements, again suggesting unknown sources of fine particles in this energy industrial base.

Severe air pollution in China is primarily caused by heavy demands for energy, especially from fossil fuels. Having the majority of China’s energy resources, northwestern China played an increasingly significant role in China’s energy supply over the past two decades, but the associated environmental consequences and energy justice are almost unknown or ignored. Here we conduct extensive model simulations using a multi-regional input-output (MRIO) model to measure sulphur dioxide (SO2) emissions resulting from the interprovincial trade associated with the west-east energy transmission in China. We examine the environmental consequences using a coupled weather forecast–atmospheric chemistry model. We show that SO2 emissions from the virtual west-east energy transmission accounted for over 40% of total SO2 emissions in northwestern China in the 2000s. Accordingly, 35–52% of SO2 atmospheric concentrations in this region could be attributed to the virtual west-east energy transmission for the same period. At some of the large-scale national energy and chemical industry bases in northwestern China, SO2 concentrations induced by the energy supply due to the demand from eastern China exceeded 60%. A tagging technique was employed to identify the source-receptor relationship of SO2 emissions embodied in west-east energy transmission by estimating the sensitivity and efficiency of the energy demanding regions to energy and heavy industry products. The results discerned eastern China to be a major sensitive energy demand region causing SO2 emission from the energy and high energy consuming industries in northwestern China. We propose that the Chinese authorities should subsidize the environmental losses in northwestern China subject to the virtual west-east energy transmission to promote energy justice.

Aim Long-acting injectable antipsychotic drugs (LAIs) are often used as an alternative to oral antipsychotics (OAPs) in individuals with psychosis who demonstrate poor medication adherence. Previous meta-analyses have found mixed results on the efficacy of LAIs, compared to OAPs, in patients with psychotic disorders. The objective of this meta-analysis was to compare the effectiveness of using LAIs versus OAPs in the early stages of psychosis. Methods Major electronic databases were used to search for any studies examining the comparative effectiveness (i.e., relapse, adherence, hospitalization, and all-cause discontinuation) of any LAIs versus OAPs in early stages of psychosis. Studies published up to 6 June, 2019 were included and no language restriction was applied. Inclusion criteria were a diagnosis of schizophrenia or related disorder, where patients were in their first episode or had a duration of illness ≤5 years. Data were analysed using a random-effects model. Results Fifteen studies (n = 10 584) were included, of which were 7 RCTs, 7 observational studies, and 1 post-hoc analysis. We found that LAIs provided advantages over OAPs in terms of relapse rates. No significant differences were found between LAI and OAP groups in terms of all-cause discontinuation, hospitalization, and adherence rates. However, considering only RCTs revealed advantages of LAIs over OAPs in terms of hospitalization rates. Conclusions LAIs may provide benefits over OAPs with respect to reducing relapse and hospitalization rates in early psychosis patients. There is a need for larger and better-designed studies comparing OAPs and LAIs specifically in early psychosis patients.

Lead (Pb) as a hazardous air pollutant has raised widespread concerns due to its adverse and toxic effects on the ecological environment and human health. Here we integrated the multi-regional input-output (MRIO) model and an atmospheric transport model to examine regional environmental inequality (REI) index induced by Pb emission transfers, and to evaluate the impacts of interprovincial trade on regional atmospheric Pb concentrations and dry deposition fluxes in China in 2012. In 2012, approximately 57.4% ~ 72.6% of Pb emissions in well-developed eastern regions (Beijing-Tianjin, Yangtze River Delta (YRD)) and the southern seaboard of China were embodied in other regions in China subject to the demands from these well-developed regions to industrial products and services. Our results, based on the net virtual flows of Pb emission and value-added, indicate that most provinces in the eastern seaboard of China outsource Pb emission and benefit from the interprovincial trade by reducing their Pb emissions. REI indexes show that the well-developed Guangdong province outsources its Pb emission but has low economic gains. Many less-developed provinces in central China enhance virtual Pb emission inflow but have high economic gains. Whereas, inland provinces in western China not only experience Pb emission increase, but also suffer from indirect economic loss due to trade with well-developed provinces to meet their increasing demands to Pb emission abundant industrial products from these provinces in eastern China which are mostly provided by less-developed but energy and mineral product abundant provinces in western China. For example, the province pair with highest REI index was Jiangsu-Inner Mongolia (REI = 2.47), which revealed that Jiangsu was the largest beneficiary which exported 37.2 t of net Pb emission and gained value-added of 521.4 billion RMB through trade with Inner Mongolia which suffered from both virtual Pb inflow and economic loss in 2012. As a result of interprovincial trade, Pb dry deposition in central and eastern China was decreased but increased in western China. Overall, interprovincial trade reduced 17.6% of atmospheric Pb dry deposition in China.

Early intervention is essential for favorable long-term outcomes in schizophrenia. However, there is limited guidance in the scientific literature on how best to choose between dopamine D2 receptor (D2R) partial agonists and D2R antagonists in early stages of schizophrenia. The aim of this meta-analysis was to directly compare D2R partial agonists with D2R antagonists for efficacy and tolerability, using randomized controlled trials (RCTs) that involved participants diagnosed with first-episode psychosis, schizophrenia, or related psychotic disorders with a duration of illness ≤5 years. Fourteen RCTs, involving 2494 patients, were included in the meta-analysis. Aripiprazole was the only identified D2R partial agonist, and was not significantly different from pooled D2R antagonists for overall symptom reduction or all-cause discontinuation. However, aripiprazole was more favorable than pooled D2R antagonists for depressive symptoms, prolactin levels, and triglyceride levels. Specifically, aripiprazole was more favorable than paliperidone for triglyceride levels and more favorable than risperidone and olanzapine, but less favorable than ziprasidone, for weight gain. In addition, aripiprazole was less favorable for akathisia compared with second-generation D2R antagonists, in particular olanzapine and quetiapine, and less favorable for discontinuation due to inefficacy than risperidone. Lastly, aripiprazole was more favorable than haloperidol for various efficacy and tolerability outcomes. In conclusion, aripiprazole’s efficacy did not differ substantially from D2R antagonists in the early course of schizophrenia, whereas differential tolerability profiles were noted. More double-blind RCTs are required comparing the efficacy and tolerability of aripiprazole as well as other D2R partial agonists with D2R antagonists in early stages of schizophrenia.

Wind farms have been found to alter local and regional meteorology and climate. Here, we show that multiple large-scale wind farms might disturb air quality forecasts and affect PM2.5 air pollution. We explore the impact of large-scale wind farms on PM2.5 concentrations and forecasts in the Northern China Plain in winter and summer using a coupled weather forecast – atmospheric chemistry model (WRF-Chem). Modelling results reveal that the large-scale wind farms decrease PM2.5 levels within the wind farms and increase PM2.5 concentrations by 49 % and 16 % of the modelled monthly mean PM2.5 concentrations in proximate areas and regions hundreds of kilometres downstream. The wind farm-forced changes in PM2.5 are more evident in the simulated hourly PM2.5 concentrations. The model sensitivity studies reveal that hourly concentration fractions in winter induced by wind farms vary from −40 % to 250 % in nearby and distant downstream regions and metropolises, comparing with the cases without the wind farms. The impact of wind farms on modeled PM2.5 during the nighttime is stronger than that in the daytime. Our results suggested that the wind farm perturbed changes in PM2.5 should not be overlooked because such changes might affect air quality forecast on an hourly basis, particularly in heavily contaminated Beijing–Tianjin–Hebei region by PM2.5.

Mycobacterium tuberculosis is the most successful pathogen with multiple mechanisms to subvert host immune response, resulting in insidious disease. There are few studies on whether the bacteria undergo antigenic variation in response to host immune pressure. Studies on T cell epitopes of M. tuberculosis can help us further understand the mechanism of interaction between the bacteria and host immune system. Here, we selected 180 M. tuberculosis complex in China, amplified 462 experimentally verified human T cell epitopes, sequenced and compared the results to analyze the diversity of those epitopes. It proved that a large majority human T cell epitopes of M. tuberculosis are conserved. However, polymorphisms of T cell epitopes indicated different categories of proteins suffered divergence from host immune pressure. Moreover, Beijing strains are more conservative than non-Beijing strains in T cell epitopes, which might make them easier to transmit than non-Beijing strains.

Short-chain chlorinated paraffins (SCCPs) have been produced and emitted intensively around the Bohai Sea, potentially causing risks to this unique ecosystem and one of primary fishery resources in China and busiest seaways in the world. Little is known about fate, cycling, and sources of SCCPs in the Bohai Sea biotic and abiotic environment. In this study, we combined a marine food web model with a comprehensive atmospheric transport-multiple phase exchange model to quantify SCCPs in the biotic and abiotic environment in the Bohai Sea. We performed multiple modeling scenario investigations to examine SCCP levels in water, sediment, and phytoplankton. We assessed numerically dry and wet depositions, biomagnification and bioaccumulation of SCCPs in the Bohai Sea marine food web. Results showed declining SCCP levels in water and sediment with increasing distance from the coastline, and so do dry and wet depositions. The net deposition overwhelmed the water-air exchange of SCCPs due to their current use in China, though the diffusive gas deposition fluctuated monthly subject to mean wind speed and temperature. A risk assessment manifests that SCCPs levels in the Bohai Sea fish species are at present not posing risks to the residents in the Bohai Sea Rim region. We identified that the SCCP emission sources in the south of the Bohai Sea made a primary contribution to its loadings to the seawater and fish contamination associated with the East Asian summer monsoon. In contrast, the SCCP emissions from the north and northwest regions of the Bohai Sea were major sources contributing to their loading and contamination to Bohai Sea food web during the wintertime, potentially driven by the East Asian winter monsoon.

The purpose of this study was to investigate the flotation behavior of long flame coal pretreated by grinding with a collector, as well as, grinding without any collector. Laser particle size analy...

The developed pore distribution and large amount of oxygen functional groups have a detrimental effect on lignite flotation. The effect of mechanical thermal expression treatment (MTET) on lignite ...

The rapid growth of economy makes China the largest energy consumer and sulfur dioxide (SO2) emitter in the world. In this study, we estimated the trends and step changes in the planetary boundary layer (PBL) vertical column density (VCD) of SO2 from 2005 to 2015 over China measured by the Ozone Monitoring Instrument (OMI). We show that these trends and step change years coincide with the effective date and period of the national strategy for energy development and relocation in northwestern China and the regulations in the reduction of SO2 emissions. Under the national regulations for the reduction of SO2 emissions in eastern and southern China, SO2 VCD in the Pearl River Delta (PRD) of southern China exhibited the largest decline during 2005–2015 at a rate of −7 % yr−1, followed by the North China Plain (NCP) (−6.7 % yr−1), Sichuan Basin (−6.3 % yr−1), and Yangtze River Delta (YRD) (−6 % yr−1). The Mann–Kendall (MK) test reveals the step change points of declining SO2 VCD in 2009 for the PRD and 2012–2013 for eastern China responding to the implementation of SO2 control regulation in these regions. In contrast, the MK test and regression analysis also revealed increasing trends of SO2 VCD in northwestern China, particularly for several hot spots featured by growing SO2 VCD in those large-scale energy industry bases in northwestern China. The enhanced SO2 VCD is potentially attributable to increasing SO2 emissions due to the development of large-scale energy industry bases in energy-abundant northwestern China under the national strategy for the energy safety of China in the 21st century. We show that these large-scale energy industry bases could overwhelm the trends and changes in provincial total SO2 emissions in northwestern China and contribute increasingly to the national total SO2 emissions in China. Given that northwestern China is more ecologically fragile and uniquely susceptible to atmospheric pollution than the rest of China, increasing SO2 emissions in this part of China should not be overlooked and merit scientific research.

Polycyclic aromatic hydrocarbons (PAHs) are a class of ubiquitous organic contaminants which poses an adverse health impact on environment and humans. This study assesses the PAHs environmental contamination and associated lung cancer risk attributable to interprovincial trade in goods and services in China. Virtual trade driven PAHs flow mainly from well-developed and industrialized provinces to less-developed provinces that provide energy and raw materials. In 2007, Shanxi (with a net PAHs outflow of 3743 tons) and Hebei (with a net PAHs outflow of 851 tons) account for 66.8% of total PAH emission outflow attributable to interprovincial trade. The largest single net PAHs flow was from Shanxi to Zhejiang (399 tons), followed by Shanxi to Jiangsu (371 tons), and Hebei to Zhejiang (194 tons). Our results also reveal a switching from outflow to inflow of industrial products with high PAH emissions in some provinces from 2007 to 2012 due to the changes in their industrial structure. The estimated incremental lifetime cancer risk (ILCR) based on modeled benzo [a]pyrene (BaP) concentrations and considering trade driven emissions shows that excess nonoccupational lung cancer cases associated with trade related industrial BaP emissions totaled 2176 in 2007, accounting for 42% of lung cancer cases induced by all Chinese BaP emissions. Without interprovincial trade, Chinese lung cancer cases would increase to 3677 in 2007, indicating that interprovincial trade reduces lung cancer cases in well-developed and populated coastal provinces and increases cases in less populated and less developed provinces, which reduces the overall number of Chinese lung cancer cases. It is recommended that well-developed provinces in eastern and southern China should subsidize those inland provinces providing goods and services to eastern and southern China, in addition to the interprovincial trade.

As the largest petrochemical industrialized city in northwestern China since the 1950s, Lanzhou has been well-known for its heavy surface ozone pollution. Given abundant emission sources of ozone precursors and the favorable environmental conditions for O3 formation, this study performed extensive atmospheric chemistry modeling investigations subject to 11 emission control scenarios. These scenarios increased and decreased emission levels of total volatile organic compound (TVOC) and nitrogen oxides (NOx), the two surface ozone (O3) precursor gases, to examine the relationships between O3 and NOx and TVOC. The modeling investigation was carried out for the summer of 2016 in the downtown and petrochemical industrial suburb in the city of Lanzhou. The results revealed that surface O3 in the downtown area of Lanzhou was controlled by VOCs and in the petrochemical-industrialized western suburb by NOx. Higher ozone levels were simulated in the west suburb of the city as compared with the downtown area, agreeing with measured data. The relationships between modeled TVOC/NOx ratios and O3 reductions, as well as the titration effect, were also discussed. The model results provided useful references for the mitigation strategy of ozone reduction in Lanzhou and other major cities in northwest China with similar climate and topography conditions.

As part of the Energy Golden Triangle in northwest China and the largest coal-to-liquids industry in the world, the emission and contamination of fine particles in the Ningdong National Energy and Chemical Industrial Base (NECIB) are unknown. There are also large knowledge gaps in the association of air pollution with coal-to-liquids industry. This paper reports the chemical composition and source apportionment of PM

The objective of this study was to investigate the drug resistance characteristics of Mycobacterium tuberculosis isolates to four first-line antituberculous drugs (ATDs) from tuberculosis (TB) patients with AIDS in Beijing, China. All M. tuberculosis strains were isolated from specimens from TB patients with AIDS hospitalised between April 2010 and October 2012. Isolates were cultured by mycobacterial culture methods and were identified by multilocus PCR. Drug sensitivity testing was performed by the proportion method with the following first-line ATDs: isoniazid; rifampicin; streptomycin; and ethambutol. Results were compared with the drug resistance status of M. tuberculosis strains isolated from TB patients without HIV infection in Beijing. Among 41 M. tuberculosis isolates from TB patients with AIDS, the rates of total drug resistance (58.5%), initial drug resistance (46.7%) and acquired drug resistance (90.9%) were significantly higher than in TB patients without HIV infection (34.1%, 24.5% and 48.5%, respectively; P

The rapid economy growth makes China the largest energy consumer and sulphur dioxide (SO2) emitter in the world. In this study, we estimated the trends and step changes in the planetary boundary layer (PBL) vertical column density (VCD) of SO2 from 2005 to 2015 over China measured by the Ozone Monitoring Instrument (OMI). We show that these trends and step change years coincide with the effective date and period of the national strategy for energy development and relocation in northwestern China and the regulations in the reduction of SO2 emissions. Under the national regulations in the reduction SO2 emissions in eastern and southern China, SO2 VCD in the Pearl River Delta (PRD) of southern China exhibited the largest decline during 2005–2015 at a rate of −7 % yr-1, followed by the North China Plain (NCP) (−6.7 % yr-1), Sichuan Basin (−6.3 % yr-1), and Yangtze River Delta (YRD) (−6 % yr-1), respectively. The Mann–Kendall (MK) test reveals the step change points of declining SO2 VCD in 2009 for the PRD and 2012–2013 for eastern China responding to the implementation of SO2 control regulation in these regions. In contrast, the MK test and regression analysis also revealed increasing trends of SO2 VCD in northwestern China, particularly for several "hot spots" featured by growing SO2 VCD in those large-scale energy industry parks in northwestern China. The enhanced SO2 VCD is potentially attributable to increasing SO2 emissions due to the development of large-scale energy industry bases in energy-abundant northwestern China under the national strategy for the energy safety of China in the 21st century. We show that these large-scale energy industry bases could overwhelm the trends and changes in provincial total SO2 emissions in northwestern China and contributed increasingly to the national total SO2 emission in China. Given that northwestern China is more ecologically fragile and uniquely susceptible to atmospheric pollution as compared with the rest of China, increasing SO2 emissions in this part of China should not be overlooked and merit scientific research.

Objectives.We studied the genetic diversity of clinical isolates from patients with tuberculosis in the multiethnic area of Xinjiang autonomous region in China. A total of 311 clinicalM. tuberculosisisolates were collected in 2006 and 2011 and genotyped by two genotyping methods. All isolates were grouped into 68 distinct spoligotypes using the spoligotyping method. The Beijing family was dominant, followed by T1 and CAS. MIRU-VNTR results showed that a total of 195 different VNTR types were identified. Ten of the 15 loci were highly or moderately discriminant according to their HGDI scores, and 13 loci had good discriminatory power in non-Beijing family strains, whereas only two loci had good discriminatory power in Beijing family strains. Chi-square tests demonstrated that there were no correlations between four characteristics (sex, age, type of case, and treatment history) and the Beijing family. In summary, Beijing family strains were predominant in Xinjiang, and theVNTR-15Chinalocus-set was suitable for genotyping all Xinjiang strains, but not for the Beijing family strains. Thus, these data suggested that different genotype distributions may exist in different regions; MLVA locus-sets should be adjusted accordingly, with newly added loci to increase resolution if necessary.

Host immune pressure and associated immune evasion of pathogenic bacteria are key features of host-pathogen co-evolution. A previous study showed that human T-cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved and thus it was deduced that M. tuberculosis lacks antigenic variation and immune evasion. Here, we selected 173 clinical M. tuberculosis complex (MTBC) isolates from China, amplified the genes encoding Rv2945c and Rv0309, and compared the sequences. The results showed that genetic diversity existed in these two genes among the MTBC strains and two single nucleotide polymorphisms (SNPs) presented higher polymorphisms. Antigen Rv2945c harbored a higher number of amino acid substitutions of its T-cell epitopes, which may reflect ongoing immune evasion. In addition, the high dN/dS value of Rv0309 suggested antigen Rv0309 might be involved in diversifying selection to evade host immunity. Finally, a small group of strains were identified based on the genetic diversity of these two genes, which might indicate that they interact differently with human T cells compared with other strains.