1,672 results on '"Lusk P"'
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2. Entanglement Holonomy for Photon Pairs in Curved Spacetime
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Lusk, Mark T.
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General Relativity and Quantum Cosmology ,Quantum Physics - Abstract
Polarization holonomy is analytically determined for maximally entangled photon pairs that transit a class of closed trajectories in the Kerr metric. This is used to define and investigate an entanglement holonomy not associated with constituent product states., Comment: 8 pages, 9 figures
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- 2024
3. Optical Polarization Holonomy in the Kerr Metric
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Lusk, Mark T.
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General Relativity and Quantum Cosmology - Abstract
Polarization holonomy is analytically determined for a class of closed, spherical trajectories of light transiting a black hole in the Kerr metric. The leading order geometric optics approximation admits a closed-form expression of such paths, and sets of source/receiver locations are quantified for a spectrum of black hole angular momenta. A conserved, conformal Yano-Killing scalar is then exploited to determine the evolving polarization. Polarization holonomy, the angle between outgoing and incoming polarizations, is quantified for the spectrum of admissible direct and retrograde trajectories. This offers a means of experimentally measuring Gravitational Faraday Rotation from a single, stationary position., Comment: 11 pages, 7 figures
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- 2024
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4. Phase-resolved measurement of entangled states via common-path interferometry
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Voitiv, Andrew A., Lusk, Mark T., and Siemens, Mark E.
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Quantum Physics ,Physics - Optics - Abstract
We propose and experimentally demonstrate a method to directly measure the phase of biphoton states using an entangled mode as a collinear reference. The technique is demonstrated with entangled photonic spatial modes in the Laguerre-Gaussian basis, and it is applicable to any pure quantum system containing an exploitable reference state in its entanglement spectrum. As one particularly useful application, we use the new methodology to directly measure the geometric phase accumulation of entangled photons.
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- 2024
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5. PRIMER: Perception-Aware Robust Learning-based Multiagent Trajectory Planner
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Kondo, Kota, Tewari, Claudius T., Tagliabue, Andrea, Tordesillas, Jesus, Lusk, Parker C., and How, Jonathan P.
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Computer Science - Robotics ,Computer Science - Machine Learning - Abstract
In decentralized multiagent trajectory planners, agents need to communicate and exchange their positions to generate collision-free trajectories. However, due to localization errors/uncertainties, trajectory deconfliction can fail even if trajectories are perfectly shared between agents. To address this issue, we first present PARM and PARM*, perception-aware, decentralized, asynchronous multiagent trajectory planners that enable a team of agents to navigate uncertain environments while deconflicting trajectories and avoiding obstacles using perception information. PARM* differs from PARM as it is less conservative, using more computation to find closer-to-optimal solutions. While these methods achieve state-of-the-art performance, they suffer from high computational costs as they need to solve large optimization problems onboard, making it difficult for agents to replan at high rates. To overcome this challenge, we present our second key contribution, PRIMER, a learning-based planner trained with imitation learning (IL) using PARM* as the expert demonstrator. PRIMER leverages the low computational requirements at deployment of neural networks and achieves a computation speed up to 5500 times faster than optimization-based approaches., Comment: 7 pages, 3 figures
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- 2024
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6. MOTLEE: Collaborative Multi-Object Tracking Using Temporal Consistency for Neighboring Robot Frame Alignment
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Peterson, Mason B., Lusk, Parker C., Avila, Antonio, and How, Jonathan P.
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Computer Science - Robotics - Abstract
Knowing the locations of nearby moving objects is important for a mobile robot to operate safely in a dynamic environment. Dynamic object tracking performance can be improved if robots share observations of tracked objects with nearby team members in real-time. To share observations, a robot must make up-to-date estimates of the transformation from its coordinate frame to the frame of each neighbor, which can be challenging because of odometry drift. We present Multiple Object Tracking with Localization Error Elimination (MOTLEE), a complete system for a multi-robot team to accurately estimate frame transformations and collaboratively track dynamic objects. To accomplish this, robots use open-set image-segmentation methods to build object maps of their environment and then use our Temporally Consistent Alignment of Frames Filter (TCAFF) to align maps and estimate coordinate frame transformations without any initial knowledge of neighboring robot poses. We show that our method for aligning frames enables a team of four robots to collaboratively track six pedestrians with accuracy similar to that of a system with ground truth localization in a challenging hardware demonstration. The code and hardware dataset are available at https://github.com/mit-acl/motlee., Comment: 8 pages, 6 figures
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- 2024
7. Measurement of nonequilibrium vortex propagation dynamics in a nonlinear medium
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Ford, Patrick C., Voitiv, Andrew A., Zhu, Chuanzhou, Lusk, Mark T., and Siemens, Mark E.
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Physics - Optics ,Condensed Matter - Other Condensed Matter ,Nonlinear Sciences - Pattern Formation and Solitons ,Physics - Fluid Dynamics - Abstract
We observe and measure the nonequilibrium dynamics of optical vortices as a function of propagation distance through a nonlinear medium. The precession of a tilted-core vortex is quantified as is vortex-core sharpening, where the infinite width of a linear core subsequently shrinks and approaches the healing length of this nonlinear optical fluid. Experiments are performed with a variable-length nonlinear medium: a nonlinear fluid in a tank with an output window on a translating tube. This provides control over the distance the light propagates in the fluid and allows for the measurement of the dynamics throughout the entire propagation range. Results are compared to the predictions of a computational simulator to find the equivalent dimensionless nonlinear coefficient., Comment: 11 pages, 9 figures
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- 2024
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8. Optimizing tracking and completion of follow-up colonoscopy after abnormal stool tests at health systems participating in the Centers for Disease Control and Prevention’s Colorectal Cancer Control Program
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Subramanian, Sujha, Tangka, Florence K. L., Hoover, Sonja, Mathews, Anjali, Redwood, Diana, Smayda, Lauren, Ruiz, Esmeralda, Silva, Rosario, Brenton, Victoria, McElroy, Jane A., Lusk, Brooke, and Eason, Susan
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- 2024
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9. CLIPPER: Robust Data Association without an Initial Guess
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Lusk, Parker C. and How, Jonathan P.
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Computer Science - Robotics ,Computer Science - Machine Learning - Abstract
Identifying correspondences in noisy data is a critically important step in estimation processes. When an informative initial estimation guess is available, the data association challenge is less acute; however, the existence of a high-quality initial guess is rare in most contexts. We explore graph-theoretic formulations for data association, which do not require an initial estimation guess. Existing graph-theoretic approaches optimize over unweighted graphs, discarding important consistency information encoded in weighted edges, and frequently attempt to solve NP-hard problems exactly. In contrast, we formulate a new optimization problem that fully leverages weighted graphs and seeks the densest edge-weighted clique. We introduce two relaxations to this problem: a convex semidefinite relaxation which we find to be empirically tight, and a fast first-order algorithm called CLIPPER which frequently arrives at nearly-optimal solutions in milliseconds. When evaluated on point cloud registration problems, our algorithms remain robust up to at least 95% outliers while existing algorithms begin breaking down at 80% outliers. Code is available at https://mit-acl.github.io/clipper., Comment: 8 pages, 4 figures, accepted to RA-L
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- 2024
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10. SOS-Match: Segmentation for Open-Set Robust Correspondence Search and Robot Localization in Unstructured Environments
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Thomas, Annika, Kinnari, Jouko, Lusk, Parker, Kondo, Kota, and How, Jonathan P.
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Computer Science - Robotics ,Computer Science - Computer Vision and Pattern Recognition - Abstract
We present SOS-Match, a novel framework for detecting and matching objects in unstructured environments. Our system consists of 1) a front-end mapping pipeline using a zero-shot segmentation model to extract object masks from images and track them across frames and 2) a frame alignment pipeline that uses the geometric consistency of object relationships to efficiently localize across a variety of conditions. We evaluate SOS-Match on the Batvik seasonal dataset which includes drone flights collected over a coastal plot of southern Finland during different seasons and lighting conditions. Results show that our approach is more robust to changes in lighting and appearance than classical image feature-based approaches or global descriptor methods, and it provides more viewpoint invariance than learning-based feature detection and description approaches. SOS-Match localizes within a reference map up to 46x faster than other feature-based approaches and has a map size less than 0.5% the size of the most compact other maps. SOS-Match is a promising new approach for landmark detection and correspondence search in unstructured environments that is robust to changes in lighting and appearance and is more computationally efficient than other approaches, suggesting that the geometric arrangement of segments is a valuable localization cue in unstructured environments. We release our datasets at https://acl.mit.edu/SOS-Match/., Comment: 8 pages, 7 figures
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- 2024
11. Norepinephrine induces anoikis resistance in high-grade serous ovarian cancer precursor cells.
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Reavis, Hunter, Gysler, Stefan, McKenney, Grace, Knarr, Matthew, Lusk, Hannah, Rawat, Priyanka, Rendulich, Hannah, Mitchell, Marilyn, Berger, Dara, Moon, Jamie, Ryu, Suyeon, Mainigi, Monica, Iwanicki, Marcin, Hoon, Dave, Drapkin, Ronny, and Sanchez, Laura
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Cancer ,Cell biology ,Cell migration/adhesion ,Obstetrics/gynecology ,Oncology ,Female ,Humans ,Ovarian Neoplasms ,Cystadenocarcinoma ,Serous ,Fallopian Tubes ,Anoikis ,Norepinephrine ,Tumor Microenvironment - Abstract
High-grade serous carcinoma (HGSC) is the most lethal gynecological malignancy in the United States. Late diagnosis and the emergence of chemoresistance have prompted studies into how the tumor microenvironment, and more recently tumor innervation, may be leveraged for HGSC prevention and interception. In addition to stess-induced sources, concentrations of the sympathetic neurotransmitter norepinephrine (NE) in the ovary increase during ovulation and after menopause. Importantly, NE exacerbates advanced HGSC progression. However, little is known about the role of NE in early disease pathogenesis. Here, we investigated the role of NE in instigating anchorage independence and micrometastasis of preneoplastic lesions from the fallopian tube epithelium (FTE) to the ovary, an essential step in HGSC onset. We found that in the presence of NE, FTE cell lines were able to survive in ultra-low-attachment (ULA) culture in a β-adrenergic receptor-dependent (β-AR-dependent) manner. Importantly, spheroid formation and cell viability conferred by treatment with physiological sources of NE were abrogated using the β-AR blocker propranolol. We have also identified that NE-mediated anoikis resistance may be attributable to downregulation of colony-stimulating factor 2. These findings provide mechanistic insight and identify targets that may be regulated by ovary-derived NE in early HGSC.
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- 2024
12. Soil nutrient availability and understorey composition beneath plantations of ecto- and arbuscular mycorrhizal Chilean native trees
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Lusk, C. H., Godoy, R., Donoso, P. J., and Dickie, I. A.
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- 2024
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13. Pump-tailored Alternative Bell State Generation in the First-Order Hermite-Gaussian basis
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Kan, Zhe, Voitiv, Andrew A., Ford, Patrick C., Lusk, Mark T., and Siemens, Mark E.
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Quantum Physics ,Physics - Optics - Abstract
We demonstrate entangled-state swapping, within the Hermite-Gaussian basis of first-order modes, directly from the process of spontaneous parametric down-conversion within a nonlinear crystal. The method works by explicitly tailoring the spatial structure of the pump photon such that it resembles the product of the desired entangled spatial modes exiting the crystal. Importantly, the result is an entangled state of balanced HG modes, which may be beneficial in applications that depend on symmetric accumulations of geometric phase through optics or in applications of quantum sensing and imaging with azimuthal sensitivity. Furthermore, the methods are readily adaptable to other spatial mode bases.
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- 2023
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14. Combination of low glucose and SCD1 inhibition impairs cancer metabolic plasticity and growth in MCF-7 cancer cells: a comprehensive metabolomic and lipidomic analysis
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Zhu, Wentao, Lusk, John A., Pascua, Vadim, Djukovic, Danijel, and Raftery, Daniel
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- 2024
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15. A comparative study of the secondary benefits of stormwater ponds in economically distinct neighborhoods of Tampa, Florida USA
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Elizabeth R. Fitch, Abbey Tyrna, and Mary G. Lusk
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Water supply for domestic and industrial purposes ,TD201-500 ,Environmental sciences ,GE1-350 - Abstract
Abstract Stormwater ponds manage urban runoff and mitigate storm-event flooding. Stormwater ponds also offer various secondary advantages such as filtering pollutants, providing a habitat for wildlife, and adding recreational value and access to green spaces to communities. However, stormwater pond features and their potential to offer secondary benefits can vary based on the initial construction and the ongoing maintenance practices. This study developed an assessment tool for evaluating stormwater ponds’ expected functioning for secondary benefits, including potential for pollutant filtering by shoreline vegetation, safety, and access by people for activities like walking or wildlife viewing. We used the tool to compare stormwater ponds in East Tampa and Riverview, Florida, communities with contrasting socioeconomic backgrounds. The overall pond functioning was consistent between both communities; however, several distinctions emerged between specific pond attributes. Suburban ponds exhibited narrower buffer zones, lower bank stability, and less lighting. Conversely, ponds in the lower-income East Tampa had lower accessibility due to a higher number of fences, more litter, and inferior water appearance. This study uncovered a need for consideration of stormwater pond secondary benefits in both communities and an untapped potential to transform stormwater ponds into vibrant green spaces.
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- 2024
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16. COVID-19 and Shame: Political Emotions and Public Health in the UK, by Fred Cooper, Luna Dolezal, and Arthur Rose. London: Bloomsbury, 2023
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Lusk, Penelope
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- 2024
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17. Quantized Optical Vortex-array Eigenstates in a Rotating Frame
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Lusk, Mark T., Voitiv, Andrew A., and Siemens, Mark E.
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Physics - Optics - Abstract
Linear combinations of Bessel beams can be used to effectively trap light within cylindrical domains. Such hard traps can be used to produce states that exhibit stationary arrays of optical vortices from the perspective of a steadily rotating frame. These patterned singularities can be engineered to have singularities of the same or mixed charges and the requisite rotation rates are quantized even though the setting is purely linear. A hydrodynamic interpretation is that the vortices are at rest within a compressible, two-dimensional fluid of light.
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- 2023
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18. A comparative study of the secondary benefits of stormwater ponds in economically distinct neighborhoods of Tampa, Florida USA
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Fitch, Elizabeth R., Tyrna, Abbey, and Lusk, Mary G.
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- 2024
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19. Association between characteristics of employing healthcare facilities and healthcare worker infection rates and psychosocial experiences during the COVID-19 pandemic
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Lusk, Jay B., Manandhar, Pratik, Thomas, Laine E., and O’Brien, Emily C.
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- 2024
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20. Experimental measurement of the geometric phase of non-geodesic circles
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Voitiv, Andrew A., Lusk, Mark T., and Siemens, Mark E.
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Physics - Optics - Abstract
We present and implement a method for the experimental measurement of geometric phase of non-geodesic (small) circles on any SU(2) parameter space. This phase is measured by subtracting the dynamic phase contribution from the total phase accumulated. Our design does not require theoretical anticipation of this dynamic phase value and the methods are generally applicable to any system accessible to interferometric and projection measurements. Experimental implementations are presented for two settings: (1) the sphere of modes of orbital angular momentum, and (2) the Poincar\'e sphere of polarizations of Gaussian beams.
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- 2023
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21. MOTLEE: Distributed Mobile Multi-Object Tracking with Localization Error Elimination
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Peterson, Mason B., Lusk, Parker C., and How, Jonathan P.
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Computer Science - Robotics - Abstract
We present MOTLEE, a distributed mobile multi-object tracking algorithm that enables a team of robots to collaboratively track moving objects in the presence of localization error. Existing approaches to distributed tracking make limiting assumptions regarding the relative spatial relationship of sensors, including assuming a static sensor network or that perfect localization is available. Instead, we develop an algorithm based on the Kalman-Consensus filter for distributed tracking that properly leverages localization uncertainty in collaborative tracking. Further, our method allows the team to maintain an accurate understanding of dynamic objects in the environment by realigning robot frames and incorporating frame alignment uncertainty into our object tracking formulation. We evaluate our method in hardware on a team of three mobile ground robots tracking four people. Compared to previous works that do not account for localization error, we show that MOTLEE is resilient to localization uncertainties, enabling accurate tracking in distributed, dynamic settings with mobile tracking sensors., Comment: 8 pages, 8 figures, accepted to IROS 2023
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- 2023
22. Robust MADER: Decentralized Multiagent Trajectory Planner Robust to Communication Delay in Dynamic Environments
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Kondo, Kota, Figueroa, Reinaldo, Rached, Juan, Tordesillas, Jesus, Lusk, Parker C., and How, Jonathan P.
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Computer Science - Robotics ,Computer Science - Multiagent Systems - Abstract
Communication delays can be catastrophic for multiagent systems. However, most existing state-of-the-art multiagent trajectory planners assume perfect communication and therefore lack a strategy to rectify this issue in real-world environments. To address this challenge, we propose Robust MADER (RMADER), a decentralized, asynchronous multiagent trajectory planner robust to communication delay. RMADER ensures safety by introducing (1) a Delay Check step, (2) a two-step trajectory publication scheme, and (3) a novel trajectory-storing-and-checking approach. Our primary contributions include: proving recursive feasibility for collision-free trajectory generation in asynchronous decentralized trajectory-sharing, simulation benchmark studies, and hardware experiments with different network topologies and dynamic obstacles. We show that RMADER outperforms existing approaches by achieving a 100% success rate of collision-free trajectory generation, whereas the next best asynchronous decentralized method only achieves 83% success., Comment: 8 pagers, 10 figures,. arXiv admin note: substantial text overlap with arXiv:2209.13667
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- 2023
23. Global Localization in Unstructured Environments using Semantic Object Maps Built from Various Viewpoints
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Ankenbauer, Jacqueline, Lusk, Parker C., Thomas, Annika, and How, Jonathan P.
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Computer Science - Robotics - Abstract
We present a novel framework for global localization and guided relocalization of a vehicle in an unstructured environment. Compared to existing methods, our pipeline does not rely on cues from urban fixtures (e.g., lane markings, buildings), nor does it make assumptions that require the vehicle to be navigating on a road network. Instead, we achieve localization in both urban and non-urban environments by robustly associating and registering the vehicle's local semantic object map with a compact semantic reference map, potentially built from other viewpoints, time periods, and/or modalities. Robustness to noise, outliers, and missing objects is achieved through our graph-based data association algorithm. Further, the guided relocalization capability of our pipeline mitigates drift inherent in odometry-based localization after the initial global localization. We evaluate our pipeline on two publicly-available, real-world datasets to demonstrate its effectiveness at global localization in both non-urban and urban environments. The Katwijk Beach Planetary Rover dataset is used to show our pipeline's ability to perform accurate global localization in unstructured environments. Demonstrations on the KITTI dataset achieve an average pose error of 3.8m across all 35 localization events on Sequence 00 when localizing in a reference map created from aerial images. Compared to existing works, our pipeline is more general because it can perform global localization in unstructured environments using maps built from different viewpoints., Comment: 8 pages, 6 figures, presented at IROS 2023
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- 2023
24. Management of posttraumatic posterior shoulder instability following a Latarjet: a case report
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Timothy Kanne, BS, John Lusk, BS, Nicholas Adam Howard, BS, Brent Ponce, MD, and Bassem Elhassan, MD
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Posterior ,Shoulder ,Instability ,Post ,Ipsilateral ,Latarjet ,Surgery ,RD1-811 - Published
- 2024
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25. Against global aims for science: values, epistemic priority, and a local aims approach
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Lusk, Greg and Elliott, Kevin C.
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- 2024
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26. Societal Implications of Personalized Pricing in Online Grocery Shopping
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Jung, Jinho, Widmar, Nicole Olynk, and Lusk, Jayson L.
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- 2024
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27. Leaf-level coordination principles propagate to the ecosystem scale.
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Gomarasca, Ulisse, Migliavacca, Mirco, Kattge, Jens, Nelson, Jacob, Niinemets, Ülo, Wirth, Christian, Cescatti, Alessandro, Bahn, Michael, Nair, Richard, Acosta, Alicia, Arain, M, Beloiu, Mirela, Black, T, Bruun, Hans, Bucher, Solveig, Buchmann, Nina, Byun, Chaeho, Carrara, Arnaud, Conte, Adriano, da Silva, Ana, Duveiller, Gregory, Fares, Silvano, Ibrom, Andreas, Knohl, Alexander, Komac, Benjamin, Limousin, Jean-Marc, Lusk, Christopher, Mahecha, Miguel, Martini, David, Minden, Vanessa, Montagnani, Leonardo, Mori, Akira, Onoda, Yusuke, Peñuelas, Josep, Perez-Priego, Oscar, Poschlod, Peter, Powell, Thomas, Reich, Peter, Šigut, Ladislav, van Bodegom, Peter, Walther, Sophia, Wohlfahrt, Georg, Wright, Ian, and Reichstein, Markus
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Ecosystem ,Plants ,Climate Change ,Plant Leaves ,Phenotype - Abstract
Fundamental axes of variation in plant traits result from trade-offs between costs and benefits of resource-use strategies at the leaf scale. However, it is unclear whether similar trade-offs propagate to the ecosystem level. Here, we test whether trait correlation patterns predicted by three well-known leaf- and plant-level coordination theories - the leaf economics spectrum, the global spectrum of plant form and function, and the least-cost hypothesis - are also observed between community mean traits and ecosystem processes. We combined ecosystem functional properties from FLUXNET sites, vegetation properties, and community mean plant traits into three corresponding principal component analyses. We find that the leaf economics spectrum (90 sites), the global spectrum of plant form and function (89 sites), and the least-cost hypothesis (82 sites) all propagate at the ecosystem level. However, we also find evidence of additional scale-emergent properties. Evaluating the coordination of ecosystem functional properties may aid the development of more realistic global dynamic vegetation models with critical empirical data, reducing the uncertainty of climate change projections.
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- 2023
28. GraffMatch: Global Matching of 3D Lines and Planes for Wide Baseline LiDAR Registration
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Lusk, Parker C., Parikh, Devarth, and How, Jonathan P.
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Computer Science - Robotics ,Computer Science - Computer Vision and Pattern Recognition - Abstract
Using geometric landmarks like lines and planes can increase navigation accuracy and decrease map storage requirements compared to commonly-used LiDAR point cloud maps. However, landmark-based registration for applications like loop closure detection is challenging because a reliable initial guess is not available. Global landmark matching has been investigated in the literature, but these methods typically use ad hoc representations of 3D line and plane landmarks that are not invariant to large viewpoint changes, resulting in incorrect matches and high registration error. To address this issue, we adopt the affine Grassmannian manifold to represent 3D lines and planes and prove that the distance between two landmarks is invariant to rotation and translation if a shift operation is performed before applying the Grassmannian metric. This invariance property enables the use of our graph-based data association framework for identifying landmark matches that can subsequently be used for registration in the least-squares sense. Evaluated on a challenging landmark matching and registration task using publicly-available LiDAR datasets, our approach yields a 1.7x and 3.5x improvement in successful registrations compared to methods that use viewpoint-dependent centroid and "closest point" representations, respectively., Comment: accepted to RA-L; 8 pages. arXiv admin note: text overlap with arXiv:2205.08556
- Published
- 2022
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29. 'Living with' CACNA1A-related hemiplegic migraine, a disease concept model
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Donna Schaare, Kendra Allison, Kara Skorge, Pangkong Fox, Laina Lusk, Sara M. Sarasua, Ingo Helbig, and Luigi Boccuto
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CACNA1A ,hemiplegic migraine ,disease concept model ,impacts ,symptoms ,caregivers ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
IntroductionCACNA1A-related Hemiplegic Migraine (HM) is a rare neurological disorder distinguished by paroxysmal episodes of hemiparesis/hemiplegia with and without headache. Clinical features have been widely characterized, yet the impacts of the paroxysmal events on the patient and caregiver have not been thoroughly explored. Disease concept models are formal frameworks used to describe the lived experiences of patients and their families, offering a source for surrogate endpoints for clinical trials.MethodsWe completed 13 semi-structured interviews with caregivers of 12 individuals diagnosed with CACNA1A-related HM. We methodically coded themes, grouping concepts into three domains. We measured the occurrence of concepts throughout all interviews and subgroups stratified by age categories.ResultsOver 11 h of interviews yielded 2,018 references to 27 distinct concepts. Established symptoms such as seizures (87 references; including status epilepticus 27 references), hemiparesis/hemiplegia (24 references), and unconsciousness (17 references) were referenced, as well as previously underreported symptoms such as apneic episodes (32 references), lost ability to eat (13 references), and vascular access challenges (10 references). The symptom impacts were largely medical (294 references), followed by health (101 references), emotional (36 references), daily living (28 references), and social (26 references). Caregiver impacts were the most referenced domain (995 references), with the pivotal effects seen in caregiver requirements (355 references), emotional (245 references), HM treatments (179 references), daily living (148 references), and health support (135 references).DiscussionCACNA1A-related HM is a complex disorder defined by serious paroxysmal events that affects a broad range of social and clinical domains. We systematically classified symptoms and impacts from HM episodes, creating a disease concept model to help develop surrogate endpoints for future clinical trials, and identified two opportunities to improve patient management, including a written emergency protocol and a transition plan for adolescents approaching adulthood.
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- 2024
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30. How to Check and Maintain Your Septic System Before and Immediately After Hurricanes
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Mary Lusk
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septic system ,Hurricane Preparation ,Hurricane Impacts ,Agriculture (General) ,S1-972 ,Plant culture ,SB1-1110 ,Biology (General) ,QH301-705.5 - Abstract
The purpose of this guide is to provide tips for how to check, maintain, and use your septic system in the days leading up to a hurricane and immediately after any associated flooding. This guide is intended for residents who have a residential septic system connected to their home. Written by Mary G. Lusk, and published by the UF/IFAS Department of Soil, Water, and Ecosystem Sciences, October 2024.
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- 2024
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31. Exaggerated postnatal surge of orexin neurons and the effects of elimination of excess orexin on blood pressure and exaggerated chemoreflex in spontaneously hypertensive rats
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Savannah Lusk, Alexander M. Moushey, Nicholas Iwakoshi, Christopher G. Wilson, Aihua Li, and Russell Ray
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hypertension ,orexin ,postnatal neurogenesis ,hypercapnia ,hypercapnic chemoreflex ,Physiology ,QP1-981 - Abstract
An overactive orexin (OX) system is associated with neurogenic hypertension and an exaggerated chemoreflex in spontaneously hypertensive rats (SHRs). However, the chronology and mechanism of this association is unclear. We hypothesized that increased postnatal neurogenesis of OX neurons in SHRs precedes and contributes to the aberrant increase in mean arterial blood pressure (MAP) and the exaggerated response to hypercapnia during postnatal development. Using immunohistochemical methods and bromodeoxyuridine, we mapped the timeline of orexin neuron neurogenesis and maturation during early postnatal development. We then used whole-body plethysmography with EEG and EMG to map the development of mean arterial pressure (MAP) and state regulation. Finally, we used OX-targeted saporin toxin to determine the effects of eliminating excess OX neurons on the elevated MAP and exaggerated chemoreflex in adult SHRs. We found that both SHRs and Wistar–Kyoto (WKY) rats experienced postnatal increases in OX neurons. However, SHRs experienced a greater increase than WKY rats before P15, which led to significantly more OX neurons in SHRs than age-matched WKY controls by P15–16 (3,720 ± 780 vs. 2,406 ± 363, p = 0.005). We found that neurogenesis, as evidenced by BrdU staining in OX-positive neurons, was the primary contributor to the excess OX neurons in SHRs during early postnatal development. While SHRs develop more OX neurons by P15–16, SHRs and normotensive WKY control rats have similar MAP during postnatal development until P25 in wakefulness (81.6 ± 6.6 vs. 67.5 ± 6.8 mmHg, p = 0.006) and sleep (79.3 ± 6.1 vs. 66.6 ± 6.5, p = 0.009), about 10 days after the surge of OX neurons. By selectively eliminating excess (∼30%) OX neurons in SHRs, we saw a significantly lowered MAP and hypercapnic ventilatory chemoreflex compared to non–lesioned SHRs at P40. Additionally, we found unique signatures in state indicative of the attention defecit phenotype commonly associated with this model. We suggest that the postnatal increase of OX neurons, primarily attributed to exaggerated postnatal OX neurogenesis, may be necessary for the development of higher MAP and exaggerated chemoreflex in SHRs, and modulation of the overactive OX system may have a potential therapeutic effect during the pre-hypertensive period.
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- 2024
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32. The Association Between Vasopressin and Adverse Kidney Outcomes in Children and Young Adults Requiring Vasopressors on Continuous Renal Replacement Therapy
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Denise C. Hasson, MD, Katja M. Gist, DO, MSc, JangDong Seo, PhD, Erin K. Stenson, MD, Aaron Kessel, MD, MS, Taiki Haga, MD, MSc, Sara LaFever, MD, PhD, Maria Jose Santiago, MD, PhD, Matthew Barhight, MD, MS, David Selewski, MD, MSCR, Zaccaria Ricci, MD, Nicholas J. Ollberding, PhD, Natalja L. Stanski, MD, on behalf of the Worldwide Exploration of Renal Replacement Outcomes Collaborative in Kidney Disease (WE-ROCK) Collaborative, Emily Ahern, CPNP, DNP, Ayse Akcan Arikan, MD, Issa Alhamoud, MD, Rashid Alobaidi, MD, MSc, Pilar Anton-Martin, MD, PhD, Shanthi S. Balani, MD, Abby Basalely, MD, MS, Amee M. Bigelow, MD, MS, Gabriella Bottari, MD, Andrea Cappoli, MD, Eileen A. Ciccia, MD, Michaela Collins, BA, Denise Colosimo, MD, Gerard Cortina, MD, Mihaela A. Damian, MD, MPH, Sara De la Mata Navazo, MD, Gabrielle DeAbreu, MD, Akash Deep, MD, Kathy L. Ding, BS, Kristin J. Dolan, MD, Sarah N. Fernandez Lafever, MD, PhD, Dana Y. Fuhrman, DO, MS, Ben Gelbart, MBBS, Stephen M. Gorga, MD, MSc, Francesco Guzzi, MD, Isabella Guzzo, MD, Taiki Haga, MD, Elizabeth Harvey, MD, Taylor Hill-Horowitz, BS, Haleigh Inthavong, BS, MS, Catherine Joseph, MD, Ahmad Kaddourah, MD, MS, Aadil Kakajiwala, MD, MSCI, Aaron D. Kessel, MD, MS, Sarah Korn, DO, Kelli A. Krallman, BSN, MS, David M. Kwiatkowski, MD, Msc, Jasmine Lee, MSc, Laurance Lequier, MD, Tina Madani Kia, BS, Kenneth E. Mah, MD, MS, Eleonora Marinari, MD, Susan D. Martin, MD, Shina Menon, MD, Tahagod H. Mohamed, MD, Catherine Morgan, MD, MSc, Theresa A. Mottes, APRN, Melissa A. Muff-Luett, MD, Siva Namachivayam, MBBS, Tara M. Neumayr, MD, Jennifer Nhan Md, MS, Abigail O’Rourke, MD, Matthew G. Pinto, MD, Dua Qutob, MD, Valeria Raggi, MD, Stephanie Reynaud, MD, Zachary A. Rumlow, DO, María J. Santiago Lozano, MD, PhD, Emily See, MBBS, David T. Selewski, MD, MSCR, Carmela Serpe, MSc, PhD, Alyssa Serratore, RN, MsC, Ananya Shah, BS, Weiwen V. Shih, MD, H. Stella Shin, MD, Cara L. Slagle, MD, Sonia Solomon, DO, Danielle E. Soranno, MD, Rachana Srivastava, MD, Michelle C. Starr, MD, MPH, Amy E. Strong, MD, MSCE, Susan A. Taylor, MSc, Sameer V. Thadani, MD, Amanda M. Uber, DO, Brynna Van Wyk, ARNP, MSN, Tennille N. Webb, MD, MSPH, Huaiyu Zang, PhD, Emily E. Zangla, DO, Michael Zappitelli, MD, MSc, T. Christine, E. Alvarez, MHI, RN, Elizabeth Bixler, BS, Erica Blender Brown, MA, CRA, Cheryl L. Brown, BS, Ambra Burrell, BA, Anwesh Dash, BS, Jennifer L. Ehrlich, RN, MHA, Simrandeep Farma, HBSc, Kim Gahring, RN, BSN, CCRN, Barbara Gales, RN, Madison R. Hilgenkamp, Sonal Jain, MS, Kate Kanwar, BA, MS, Jennifer Lusk, BSN, RN, CCRN, Christopher J. Meyer, BA AA, Katherine Plomaritas, BSN, RN, Joshua Porter, BS, Jessica Potts, BSN, RN, Alyssa Serratore, BNurs, GDipNP(PIC), RN, MsC, Elizabeth Schneider, BS, Vidushi Sinha, BS, P. J. Strack, RN, BSN, CCRN, Sue Taylor, RN, Katherine Twombley, MD, Brynna Van Wyk, MSN, ARNP, CPNP, Samantha Wallace, MS, Janet Wang, BS, Megan Woods, BS, Marcia Zinger, RN, and Alison Zong, BS
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Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
OBJECTIVES:. Continuous renal replacement therapy (CRRT) and shock are both associated with high morbidity and mortality in the ICU. Adult data suggest renoprotective effects of vasopressin vs. catecholamines (norepinephrine and epinephrine). We aimed to determine whether vasopressin use during CRRT was associated with improved kidney outcomes in children and young adults. DESIGN:. Secondary analysis of Worldwide Exploration of Renal Replacement Outcomes Collaborative in Kidney Disease (WE-ROCK), a multicenter, retrospective cohort study. SETTING:. Neonatal, cardiac, PICUs at 34 centers internationally from January 1, 2015, to December 31, 2021. PATIENTS/SUBJECTS:. Patients younger than 25 years receiving CRRT for acute kidney injury and/or fluid overload and requiring vasopressors. Patients receiving vasopressin were compared with patients receiving only norepinephrine/epinephrine. The impact of timing of vasopressin relative to CRRT start was assessed by categorizing patients as: early (on or before day 0), intermediate (days 1–2), and late (days 3–7). INTERVENTIONS:. None. MEASUREMENTS AND MAIN RESULTS:. Of 1016 patients, 665 (65%) required vasopressors in the first week of CRRT. Of 665, 248 (37%) received vasopressin, 473 (71%) experienced Major Adverse Kidney Events at 90 days (MAKE-90) (death, renal replacement therapy dependence, and/or > 125% increase in serum creatinine from baseline 90 days from CRRT initiation), and 195 (29%) liberated from CRRT on the first attempt within 28 days. Receipt of vasopressin was associated with higher odds of MAKE-90 (adjusted odds ratio [aOR], 1.80; 95% CI, 1.20–2.71; p = 0.005) but not liberation success. In the vasopressin group, intermediate/late initiation was associated with higher odds of MAKE-90 (aOR, 2.67; 95% CI, 1.17–6.11; p = 0.02) compared with early initiation. CONCLUSIONS:. Nearly two-thirds of children and young adults receiving CRRT required vasopressors, including over one-third who received vasopressin. Receipt of vasopressin was associated with more MAKE-90, although earlier initiation in those who received it appears beneficial. Prospective studies are needed to understand the appropriate timing, dose, and subpopulation for use of vasopressin.
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- 2024
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33. Frequently Asked Questions about Stormwater Wet Ponds
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Ange Asanzi, Miranda Carver Martin, Michelle Atkinson, Chamoda P. D. Dissanayake Mudiyanselage, Basil V. Iannone III, Eban Bean, Alexander J. Reisinger, Mary Lusk, Dail Laughinghouse, and Paul Monaghan
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pond maintenance ,Florida-Friendly Landscaping ,stormwater management ,ponding (water management) ,ponds ,Agriculture (General) ,S1-972 ,Plant culture ,SB1-1110 ,Biology (General) ,QH301-705.5 - Abstract
This publication addresses some of the most frequent questions that residents ask regarding the function and maintenance of their stormwater ponds. Written by Ange Asanzi, Miranda Carver Martin, Michelle Atkinson, Chamoda P. D. Dissanayake Mudiyanselage, Basil V. Iannone III, Eban Bean, Alexander J. Reisinger, Mary Lusk, Dail Laughinghouse, and Paul Monaghan, and published by the UF/IFAS Department of Agricultural Education and Communication, August 2024.
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- 2024
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34. Vglut2-based glutamatergic signaling in central noradrenergic neurons is dispensable for normal breathing and chemosensory reflexes
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Yuan Chang, Savannah Lusk, Andersen Chang, Christopher S Ward, and Russell S Ray
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glutamate ,noradrenergic neuron ,breathing ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Central noradrenergic (NA) neurons are key constituents of the respiratory homeostatic network. NA dysfunction is implicated in several developmental respiratory disorders including Congenital Central Hyperventilation Syndrome (CCHS), Sudden Infant Death Syndrome (SIDS), and Rett Syndrome. The current unchallenged paradigm in the field, supported by multiple studies, is that glutamate co-transmission in subsets of central NA neurons plays a role in breathing control. If true, NA-glutamate co-transmission may also be mechanistically important in respiratory disorders. However, the requirement of NA-derived glutamate in breathing has not been directly tested and the extent of glutamate co-transmission in the central NA system remains uncharacterized. Therefore, we fully characterized the cumulative fate maps and acute adult expression patterns of all three vesicular glutamate transporters (Slc17a7 (Vglut1), Slc17a6 (Vglut2), and Slc17a8 (Vglut3)) in NA neurons, identifying a novel, dynamic expression pattern for Vglut2 and an undescribed co-expression domain for Vglut3 in the NA system. In contrast to our initial hypothesis that NA-derived glutamate is required to breathing, our functional studies showed that loss of Vglut2 throughout the NA system failed to alter breathing or metabolism under room air, hypercapnia, or hypoxia in unrestrained and unanesthetized mice. These data demonstrate that Vglut2-based glutamatergic signaling within the central NA system is not required for normal baseline breathing and hypercapnic, hypoxic chemosensory reflexes. These outcomes challenge the current understanding of central NA neurons in the control of breathing and suggests that glutamate may not be a critical target to understand NA neuron dysfunction in respiratory diseases.
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- 2024
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35. Interdisciplinary Engagement In Neurocardiology: A Key Opportunity
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Jay B. Lusk, Brian C. Mac Grory, Kevin N. Sheth, and Deepak L. Bhatt
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cardiology ,dementia ,interdisciplinary communication ,interdisciplinary research ,interdisciplinary studies ,neurology ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Published
- 2024
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36. Pozos privados 101: contaminación bacteriana y la cloración de choque
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Yilin Zhuang, Mary Lusk, and Andrea Albertin
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pozos ,tratamiento del agua potable ,cloración ,Agriculture (General) ,S1-972 ,Plant culture ,SB1-1110 ,Biology (General) ,QH301-705.5 - Abstract
Este documento está dirigido a los residentes de Florida que dependen de pozos privados para su suministro de agua potable. El propósito educar a los propietarios de pozos sobre los riesgos de contaminación bacteriana, particularmente después de eventos de inundación, y proporcionar una guía detallada para realizar una cloración de choque efectiva. La cloración de choque es un método crucial para desinfectar pozos contaminados y asegurar la potabilidad del agua. Además, se ofrecen recomendaciones sobre el uso correcto de cloro, la importancia de pruebas de laboratorio post-desinfección, y consideraciones sobre la posible necesidad de sistemas de desinfección continuos en casos de contaminación persistente.
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- 2024
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37. Global beta-diversity of angiosperm trees is shaped by Quaternary climate change
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Xu, Wu-Bing, Guo, Wen-Yong, Serra-Diaz, Josep M, Schrodt, Franziska, Eiserhardt, Wolf L, Enquist, Brian J, Maitner, Brian S, Merow, Cory, Violle, Cyrille, Anand, Madhur, Belluau, Michaël, Bruun, Hans Henrik, Byun, Chaeho, Catford, Jane A, Cerabolini, Bruno EL, Chacón-Madrigal, Eduardo, Ciccarelli, Daniela, Cornelissen, J Hans C, Dang-Le, Anh Tuan, de Frutos, Angel, Dias, Arildo S, Giroldo, Aelton B, Gutiérrez, Alvaro G, Hattingh, Wesley, He, Tianhua, Hietz, Peter, Hough-Snee, Nate, Jansen, Steven, Kattge, Jens, Komac, Benjamin, Kraft, Nathan JB, Kramer, Koen, Lavorel, Sandra, Lusk, Christopher H, Martin, Adam R, Ma, Ke-Ping, Mencuccini, Maurizio, Michaletz, Sean T, Minden, Vanessa, Mori, Akira S, Niinemets, Ülo, Onoda, Yusuke, Onstein, Renske E, Peñuelas, Josep, Pillar, Valério D, Pisek, Jan, Pound, Matthew J, Robroek, Bjorn JM, Schamp, Brandon, Slot, Martijn, Sun, Miao, Sosinski, Ênio E, Soudzilovskaia, Nadejda A, Thiffault, Nelson, van Bodegom, Peter M, van der Plas, Fons, Zheng, Jingming, Svenning, Jens-Christian, and Ordonez, Alejandro
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Life Below Water ,Climate Action ,Humans ,Phylogeny ,Magnoliopsida ,Climate Change ,Biodiversity - Abstract
As Earth's climate has varied strongly through geological time, studying the impacts of past climate change on biodiversity helps to understand the risks from future climate change. However, it remains unclear how paleoclimate shapes spatial variation in biodiversity. Here, we assessed the influence of Quaternary climate change on spatial dissimilarity in taxonomic, phylogenetic, and functional composition among neighboring 200-kilometer cells (beta-diversity) for angiosperm trees worldwide. We found that larger glacial-interglacial temperature change was strongly associated with lower spatial turnover (species replacements) and higher nestedness (richness changes) components of beta-diversity across all three biodiversity facets. Moreover, phylogenetic and functional turnover was lower and nestedness higher than random expectations based on taxonomic beta-diversity in regions that experienced large temperature change, reflecting phylogenetically and functionally selective processes in species replacement, extinction, and colonization during glacial-interglacial oscillations. Our results suggest that future human-driven climate change could cause local homogenization and reduction in taxonomic, phylogenetic, and functional diversity of angiosperm trees worldwide.
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- 2023
38. MIXER: Multiattribute, Multiway Fusion of Uncertain Pairwise Affinities
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Lusk, Parker C., Fathian, Kaveh, and How, Jonathan P.
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Robotics - Abstract
We present a multiway fusion algorithm capable of directly processing uncertain pairwise affinities. In contrast to existing works that require initial pairwise associations, our MIXER algorithm improves accuracy by leveraging the additional information provided by pairwise affinities. Our main contribution is a multiway fusion formulation that is particularly suited to processing non-binary affinities and a novel continuous relaxation whose solutions are guaranteed to be binary, thus avoiding the typical, but potentially problematic, solution binarization steps that may cause infeasibility. A crucial insight of our formulation is that it allows for three modes of association, ranging from non-match, undecided, and match. Exploiting this insight allows fusion to be delayed for some data pairs until more information is available, which is an effective feature for fusion of data with multiple attributes/information sources. We evaluate MIXER on typical synthetic data and benchmark datasets and show increased accuracy against the state of the art in multiway matching, especially in noisy regimes with low observation redundancy. Additionally, we collect RGB data of cars in a parking lot to demonstrate MIXER's ability to fuse data having multiple attributes (color, visual appearance, and bounding box). On this challenging dataset, MIXER achieves 74% F1 accuracy and is 49x faster than the next best algorithm, which has 42% accuracy. Open source code is available at https://github.com/mit-acl/mixer., Comment: 8 pages + proofs
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- 2022
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39. Robust MADER: Decentralized and Asynchronous Multiagent Trajectory Planner Robust to Communication Delay
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Kondo, Kota, Tordesillas, Jesus, Figueroa, Reinaldo, Rached, Juan, Merkel, Joseph, Lusk, Parker C., and How, Jonathan P.
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Computer Science - Robotics ,Computer Science - Multiagent Systems ,Electrical Engineering and Systems Science - Systems and Control - Abstract
Although communication delays can disrupt multiagent systems, most of the existing multiagent trajectory planners lack a strategy to address this issue. State-of-the-art approaches typically assume perfect communication environments, which is hardly realistic in real-world experiments. This paper presents Robust MADER (RMADER), a decentralized and asynchronous multiagent trajectory planner that can handle communication delays among agents. By broadcasting both the newly optimized trajectory and the committed trajectory, and by performing a delay check step, RMADER is able to guarantee safety even under communication delay. RMADER was validated through extensive simulation and hardware flight experiments and achieved a 100% success rate of collision-free trajectory generation, outperforming state-of-the-art approaches., Comment: 7 pages
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- 2022
40. Association between characteristics of employing healthcare facilities and healthcare worker infection rates and psychosocial experiences during the COVID-19 pandemic
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Jay B. Lusk, Pratik Manandhar, Laine E. Thomas, and Emily C. O’Brien
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Occupational health ,COVID-19 ,Hospital ownership ,Non-profit ,Burnout ,Hospital size ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background Healthcare facility characteristics, such as ownership, size, and location, have been associated with patient outcomes. However, it is not known whether the outcomes of healthcare workers are associated with the characteristics of their employing healthcare facilities, particularly during the COVID-19 pandemic. Methods This was an analysis of a nationwide registry of healthcare workers (the Healthcare Worker Exposure Response and Outcomes (HERO) registry). Participants were surveyed on their personal, employment, and medical characteristics, as well as our primary study outcomes of COVID-19 infection, access to personal protective equipment, and burnout. Participants from healthcare sites with at least ten respondents were included, and these sites were linked to American Hospital Association data to extract information about sites, including number of beds, teaching status, urban/rural location, and for-profit status. Generalized estimating equations were used to estimate linear regression models for the unadjusted and adjusted associations between healthcare facility characteristics and outcomes. Results A total of 8,941 healthcare workers from 97 clinical sites were included in the study. After adjustment for participant demographics, healthcare role, and medical comorbidities, facility for-profit status was associated with greater odds of COVID-19 diagnosis (aOR 1.76, 95% CI 1.02–3.03, p = .042). Micropolitan location was associated with decreased odds of COVID-19 infection after adjustment (aOR = 0.42, 95% CI 0.24, 0.71, p = .002. For-profit facility status was associated with decreased odds of burnout after adjustment (aOR = 0.53, 95% CI 0.29–0.98), p = .044). Conclusions For-profit status of employing healthcare facilities was associated with greater odds of COVID-19 diagnosis but decreased odds of burnout after adjustment for demographics, healthcare role, and medical comorbidities. Future research to understand the relationship between facility ownership status and healthcare outcomes is needed to promote wellbeing in the healthcare workforce. Trial registration The registry was prospectively registered: ClinicalTrials.gov Identifier (trial registration number) NCT04342806, submitted April 8, 2020.
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- 2024
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41. Neighborhood Socioeconomic Disadvantage and 30‐Day Outcomes for Common Cardiovascular Conditions
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Jay B. Lusk, Beau Blass, Hannah Mahoney, Molly N. Hoffman, Amy G. Clark, Jonathan Bae, Robert J. Mentz, Tracy Y. Wang, Manesh Patel, and Bradley G. Hammill
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health care access ,health equity ,neighborhood deprivation ,outcomes ,socioeconomic status ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Background Understanding the relationship between neighborhood environment and cardiovascular outcomes is important to achieve health equity and implement effective quality strategies. We conducted a population‐based cohort study to determine the association of neighborhood socioeconomic deprivation and 30‐day mortality and readmission rate for patients admitted with common cardiovascular conditions. Methods and Results We examined claims data from fee‐for‐service Medicare beneficiaries aged ≥65 years between 2017 and 2019 admitted for heart failure, valvular heart disease, ischemic heart disease, or cardiac arrhythmias. The primary exposure was the Area Deprivation Index; outcomes were 30‐day all‐cause death and unplanned readmission. More than 2 million admissions were included. After sequential adjustment for patient characteristics (demographics, dual eligibility, comorbidities), area health care resources (primary care clinicians, specialists, and hospital beds per capita), and admitting hospital characteristics (ownership, size, teaching status), there was a dose‐dependent association between neighborhood socioeconomic deprivation and 30‐day mortality rate for all conditions. In the fully adjusted model for death, estimated effect sizes of residence in the most disadvantaged versus least disadvantaged neighborhoods ranged from adjusted odds ratio 1.29 (95% CI, 1.22–1.36) for the heart failure group to adjusted odds ratio 1.63 (95% CI, 1.36–1.95) for the valvular heart disease group. Neighborhood deprivation was associated with increased adjusted 30‐day readmission rates, with estimated effect sizes from adjusted odds ratio 1.09 (95% CI, 1.05–1.14) for heart failure to adjusted odds ratio 1.19 (95% CI, 1.13–1.26) for arrhythmia. Conclusions Neighborhood socioeconomic disadvantage was associated with 30‐day mortality rate and readmission for patients admitted with common cardiovascular conditions independent of individual demographics, socioeconomic status, medical risk, care access, or admitting hospital characteristics.
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- 2024
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42. Days Alive and Out of Hospital: Reframing Stroke Outcomes for Better Patient‐Centered Care
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Jay B. Lusk and Emily C. O'Brien
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Editorials ,patient‐centered outcomes ,quality ,stroke ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Published
- 2024
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43. Phase-resolved measurement of entangled states via common-path interferometry
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Andrew A. Voitiv, Mark T. Lusk, and Mark E. Siemens
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Applied optics. Photonics ,TA1501-1820 - Abstract
We propose and experimentally demonstrate a method to directly measure the phase of biphoton states using an entangled mode as a collinear reference. The technique is demonstrated with entangled photonic spatial modes in the Laguerre–Gaussian basis, and it is applicable to any pure quantum system containing an exploitable reference state in its entanglement spectrum. As one particularly useful application, we use the new methodology to directly measure the geometric phase accumulation of entangled photons.
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- 2024
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44. Global Data Association for SLAM with 3D Grassmannian Manifold Objects
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Lusk, Parker C. and How, Jonathan P.
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Computer Science - Robotics - Abstract
Using pole and plane objects in lidar SLAM can increase accuracy and decrease map storage requirements compared to commonly-used point cloud maps. However, place recognition and geometric verification using these landmarks is challenging due to the requirement for global matching without an initial guess. Existing works typically only leverage either pole or plane landmarks, limiting application to a restricted set of environments. We present a global data association method for loop closure in lidar scans using 3D line and plane objects simultaneously and in a unified manner. The main novelty of this paper is in the representation of line and plane objects extracted from lidar scans on the manifold of affine subspaces, known as the affine Grassmannian. Line and plane correspondences are matched using our graph-based data association framework and subsequently registered in the least-squares sense. Compared to pole-only approaches and plane-only approaches, our 3D affine Grassmannian method yields a 71% and 325% increase respectively to loop closure recall at 100% precision on the KITTI dataset and can provide frame alignment with less than 10 cm and 1 deg of error.
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- 2022
45. The Peripheral Vortex Biome of Confined Quantum Fluids and Its Influence on Vortex Pair Annihilation
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Zhu, Chuanzhou, Ford, Patrick C., Siemens, Mark E., and Lusk, Mark T.
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Physics - Optics ,Condensed Matter - Other Condensed Matter ,Condensed Matter - Quantum Gases - Abstract
The self-annihilation of oppositely charged optical vortices in a quantum fluid is hindered by nonlinearity and promoted by radial confinement, resulting in rich life-cycle dynamics of such pairs. The competing effects generate a biome of peripheral vortices that can directly interact with the original pair to produce a sequence of surrogation events. Numerical simulation is used to elucidate the role of the vortex biome as a function of nonlinearity strength and the initial spacing between the engineered vortices. The results apply directly to other nonlinear quantum fluids as well and may be useful in the control of complex condensates in which vortex dynamics produce topologically protected phases., Comment: 8 pages, 7 figures
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- 2022
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46. Lipidomic Analysis of Arabidopsis T-DNA Insertion Lines Leads to Identification and Characterization of C-Terminal Alterations in FATTY ACID DESATURASE 6
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Lusk, Hannah J, Neumann, Nicholas, Colter, Madeline, Roth, Mary R, Tamura, Pamela, Yao, Libin, Shiva, Sunitha, Shah, Jyoti, Schrick, Kathrin, Durrett, Timothy P, and Welti, Ruth
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Biotechnology ,Genetics ,Amino Acids ,Arabidopsis ,Arabidopsis Proteins ,DNA ,Bacterial ,Fatty Acid Desaturases ,Fatty Acids ,Lipidomics ,Arabidopsis thaliana ,Fatty acid desaturase ,Mass spectrometry ,Arabidopsis thaliana ,Biochemistry and Cell Biology ,Plant Biology ,Plant Biology & Botany ,Plant biology - Abstract
Mass-spectrometry-based screening of lipid extracts of wounded and unwounded leaves from a collection of 364 Arabidopsis thaliana T-DNA insertion lines produced lipid profiles that were scored on the number and significance of their differences from the leaf lipid profiles of wild-type plants. The analysis identified Salk_109175C, which displayed alterations in leaf chloroplast glycerolipid composition, including a decreased ratio between two monogalactosyldiacylglycerol (MGDG) molecular species, MGDG(18:3/16:3) and MGDG(18:3/18:3). Salk_109175C has a confirmed insertion in the At5g64790 locus; the insertion did not co-segregate with the recessive lipid phenotype in the F2 generation of a wild-type (Columbia-0) × Salk_109175C cross. The altered lipid compositional phenotype mapped to the At4g30950 locus, which encodes the plastidial ω-6 desaturase FATTY ACID DESATURASE 6 (FAD6). Sequencing revealed a splice-site mutation, leading to the in-frame deletion of 13 amino acids near the C-terminal end of the 448 amino acid protein. Heterologous expression in yeast showed that this deletion eliminates desaturase activity and reduces protein stability. Sequence comparison across species revealed that several amino acids within the deletion are conserved in plants and cyanobacteria. Individual point mutations in four conserved residues resulted in 77-97% reductions in desaturase activity, while a construct with all four alanine substitutions lacked activity. The data suggest that the deleted region of FAD6, which is on the C-terminal side of the four putative transmembrane segments and the histidine boxes putatively involved in catalysis, is critical for FAD6 function.
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- 2022
47. Tilted Poincar\'e Sphere Geodesics
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Voitiv, Andrew A., Lusk, Mark T., and Siemens, Mark E.
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Physics - Optics - Abstract
We provide the first experimental demonstration of geometric phase generated in association with closed Poincar\'e Sphere trajectories comprised of geodesic arcs that do not start, end, or necessarily even include, the north and south poles that represent pure Laguerre- Gaussian modes. Arbitrarily tilted (elliptical) single vortex states are prepared with a spatial light modulator, and Poincar\'e Sphere circuits are driven by beam transit through a series of {\pi}-converters and Dove prisms.
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- 2022
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48. An ESCRT grommet cooperates with a diffusion barrier to maintain nuclear integrity
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Ader, Nicholas R., Chen, Linda, Surovtsev, Ivan V., Chadwick, William L., Rodriguez, Elisa C., King, Megan C., and Lusk, C. Patrick
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- 2023
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49. Building synthetic chromosomes from natural DNA
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Alessandro L. V. Coradini, Christopher Ne Ville, Zachary A. Krieger, Joshua Roemer, Cara Hull, Shawn Yang, Daniel T. Lusk, and Ian M. Ehrenreich
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Science - Abstract
Abstract De novo chromosome synthesis is costly and time-consuming, limiting its use in research and biotechnology. Building synthetic chromosomes from natural components is an unexplored alternative with many potential applications. In this paper, we report CReATiNG (Cloning, Reprogramming, and Assembling Tiled Natural Genomic DNA), a method for constructing synthetic chromosomes from natural components in yeast. CReATiNG entails cloning segments of natural chromosomes and then programmably assembling them into synthetic chromosomes that can replace the native chromosomes in cells. We use CReATiNG to synthetically recombine chromosomes between strains and species, to modify chromosome structure, and to delete many linked, non-adjacent regions totaling 39% of a chromosome. The multiplex deletion experiment reveals that CReATiNG also enables recovery from flaws in synthetic chromosome design via recombination between a synthetic chromosome and its native counterpart. CReATiNG facilitates the application of chromosome synthesis to diverse biological problems.
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- 2023
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50. Cross-ancestry genome-wide meta-analysis of 61,047 cases and 947,237 controls identifies new susceptibility loci contributing to lung cancer.
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Byun, Jinyoung, Han, Younghun, Li, Yafang, Xia, Jun, Long, Erping, Choi, Jiyeon, Xiao, Xiangjun, Zhu, Meng, Zhou, Wen, Sun, Ryan, Bossé, Yohan, Song, Zhuoyi, Schwartz, Ann, Lusk, Christine, Rafnar, Thorunn, Stefansson, Kari, Zhang, Tongwu, Zhao, Wei, Pettit, Rowland W, Liu, Yanhong, Li, Xihao, Zhou, Hufeng, Walsh, Kyle M, Gorlov, Ivan, Gorlova, Olga, Zhu, Dakai, Rosenberg, Susan M, Pinney, Susan, Bailey-Wilson, Joan E, Mandal, Diptasri, de Andrade, Mariza, Gaba, Colette, Willey, James C, You, Ming, Anderson, Marshall, Wiencke, John K, Albanes, Demetrius, Lam, Stephan, Tardon, Adonina, Chen, Chu, Goodman, Gary, Bojeson, Stig, Brenner, Hermann, Landi, Maria Teresa, Chanock, Stephen J, Johansson, Mattias, Muley, Thomas, Risch, Angela, Wichmann, H-Erich, Bickeböller, Heike, Christiani, David C, Rennert, Gad, Arnold, Susanne, Field, John K, Shete, Sanjay, Le Marchand, Loic, Melander, Olle, Brunnstrom, Hans, Liu, Geoffrey, Andrew, Angeline S, Kiemeney, Lambertus A, Shen, Hongbing, Zienolddiny, Shanbeh, Grankvist, Kjell, Johansson, Mikael, Caporaso, Neil, Cox, Angela, Hong, Yun-Chul, Yuan, Jian-Min, Lazarus, Philip, Schabath, Matthew B, Aldrich, Melinda C, Patel, Alpa, Lan, Qing, Rothman, Nathaniel, Taylor, Fiona, Kachuri, Linda, Witte, John S, Sakoda, Lori C, Spitz, Margaret, Brennan, Paul, Lin, Xihong, McKay, James, Hung, Rayjean J, and Amos, Christopher I
- Subjects
Humans ,Lung Neoplasms ,Genetic Predisposition to Disease ,RNA-Binding Proteins ,DNA-Binding Proteins ,Polymorphism ,Single Nucleotide ,Quantitative Trait Loci ,Genome-Wide Association Study ,Human Genome ,Cancer ,Genetics ,Lung ,2.1 Biological and endogenous factors ,Aetiology ,Biological Sciences ,Medical and Health Sciences ,Developmental Biology - Abstract
To identify new susceptibility loci to lung cancer among diverse populations, we performed cross-ancestry genome-wide association studies in European, East Asian and African populations and discovered five loci that have not been previously reported. We replicated 26 signals and identified 10 new lead associations from previously reported loci. Rare-variant associations tended to be specific to populations, but even common-variant associations influencing smoking behavior, such as those with CHRNA5 and CYP2A6, showed population specificity. Fine-mapping and expression quantitative trait locus colocalization nominated several candidate variants and susceptibility genes such as IRF4 and FUBP1. DNA damage assays of prioritized genes in lung fibroblasts indicated that a subset of these genes, including the pleiotropic gene IRF4, potentially exert effects by promoting endogenous DNA damage.
- Published
- 2022
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