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To segment brain tissues in magnetic resonance images of the brain, we have implemented a stochastic relaxation method which utilizes partial volume analysis for every brain voxel, and operates on fully three-dimensional (3-D) data. However, there are still problems with automatically or semi-automatically segmenting thick magnetic resonance (MR) slices, particularly when trying to segment the small lesions present in MR images of multiple sclerosis patients. To improve lesion segmentation we have extended our method of stochastic relaxation by both pre- and post-processing the MR images. The preprocessing step involves image enhancement using homomorphic filtering to correct for nonhomogeneities in the coil and magnet. Because approximately 95% of all multiple sclerosis lesions occur in the white matter of the brain, the post-processing step involves application of morphological processing and thresholding techniques to the intermediate segmentation in order to develop a mask image containing only white matter and Multiple Sclerosis (MS) lesion. This white/lesion masked image is then segmented by again applying our stochastic relaxation technique. The process has been applied to multispectral MRI scans of multiple sclerosis patients and the results compare favorably to manual segmentations of the same scans obtained independently by radiology health professionals.

A robust fully automatic method for segmenting the brain from head magnetic resonance (MR) images has been developed, which works even in the presence of radio frequency (RF) inhomogeneities. It has been successful in segmenting the brain in every slice from head images acquired from several different MRI scanners, using different-resolution images and different echo sequences. The method uses an integrated approach which employs image processing techniques based on anisotropic filters and "snakes" contouring techniques, and a priori knowledge, which is used to remove the eyes, which are tricky to remove based on image intensity alone. It is a multistage process, involving first removal of the background noise leaving a head mask, then finding a rough outline of the brain, then refinement of the rough brain outline to a final mask. The paper describes the main features of the method, and gives results for some brain studies.