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We introduce algorithms for robustly computing intrinsic coordinates on point clouds. Our approach relies on generating many candidate coordinates by subsampling the data and varying hyperparameters of the embedding algorithm (e.g., manifold learning). We then identify a subset of representative embeddings by clustering the collection of candidate coordinates and using shape descriptors from topological data analysis. The final output is the embedding obtained as an average of the representative embeddings using generalized Procrustes analysis. We validate our algorithm on both synthetic data and experimental measurements from genomics, demonstrating robustness to noise and outliers.

We describe a structure on a commutative ring (pre)cyclotomic spectrum $R$ that gives rise to a (pre)cyclotomic structure on topological Hochschild homology ($THH$) relative to its underlying commutative ring spectrum. This lets us construct $TC$ relative to $R$, denoted $TC^{R}$, and we prove some descent results relating $TC^{R}$ and $TC$. We explore several examples of this structure on familiar $\mathbb{T}$-equivariant commutative ring spectra including the periodic $\mathbb{T}$-equivariant complex cobordism spectrum $MUP_{\mathbb{T}}$ and a new (connective) equivariant version of the complex cobordism spectrum $MU$., Comment: This is a preliminary version that depends on the work in progress [Cyc23]

We propose a construction of an analogue of the Hill-Hopkins-Ravenel relative norm $N_{H}^{G}$ in the context of a positive dimensional compact Lie group $G$ and closed subgroup $H$. We explore expected properties of the construction. We show that in the case when $G$ is the circle group (the unit complex numbers), the proposed construction here agrees with the relative norm constructed by Angeltveit, Gerhardt, Lawson, and the authors using the cyclic bar construction. Our construction is based on a new perspective on equivariant factorization homology, using framings to convert from actions of one group to another.

We show that the map from $K({\mathbb S})$ to its chromatic completion is a connective cover and identify the fiber in $K$-theoretic terms. We combine this with recent work of Land-Mathew-Meier-Tamme to prove a form of "Waldhausen's Chromatic Convergence Conjecture": we show that the map $K({\mathbb S}_{(p)})_{(p)}\to \mathop{\rm holim} K(L^{f}_{n}{\mathbb S})_{(p)}$ is the inclusion of a wedge summand.

The map $TC(\mathbb{S})^{\wedge}_{p}\to \text{holim } TC(L_{n}\mathbb{S})^{\wedge}_{p}$ is a weak equivalence.

Let $p\in \mathbb Z$ be an odd prime. We show that the fiber sequence for the cyclotomic trace of the sphere spectrum $\mathbb S$ admits an "eigensplitting" that generalizes known splittings on $K$-theory and $TC$. We identify the summands in the fiber as the covers of $\mathbb Z_{p}$-Anderson duals of summands in the $K(1)$-localized algebraic $K$-theory of $\mathbb Z$. Analogous results hold for the ring $\mathbb Z$ where we prove that the $K(1)$-localized fiber sequence is self-dual for $\mathbb Z_{p}$-Anderson duality, with the duality permuting the summands by $i\mapsto p-i$ (indexed mod $p-1$). We explain an intrinsic characterization of the summand we call $Z$ in the splitting $TC(\mathbb Z)^{\wedge}_{p}\simeq j \vee \Sigma j'\vee Z$ in terms of units in the $p$-cyclotomic tower of $\mathbb Q_{p}$., Comment: Minor corrections and improvements

Comparing and aligning large datasets is a pervasive problem occurring across many different knowledge domains. We introduce and study MREC, a recursive decomposition algorithm for computing matchings between data sets. The basic idea is to partition the data, match the partitions, and then recursively match the points within each pair of identified partitions. The matching itself is done using black box matching procedures that are too expensive to run on the entire data set. Using an absolute measure of the quality of a matching, the framework supports optimization over parameters including partitioning procedures and matching algorithms. By design, MREC can be applied to extremely large data sets. We analyze the procedure to describe when we can expect it to work well and demonstrate its flexibility and power by applying it to a number of alignment problems arising in the analysis of single cell molecular data.

This is an expository article about operads in homotopy theory written as a chapter for an upcoming book. It concentrates on what the author views as the basic topics in the homotopy theory of operadic algebras: the definition of operads, the definition of algebras over operads, structural aspects of categories of algebras over operads, model structures on algebra categories, and comparison of algebra categories when changing operad or underlying category. In addition, it includes two applications of the theory: The original application to $n$-fold loop spaces, and an application to algebraic models of homotopy types (chosen purely on the basis of author bias)., Comment: Expository article; book chapter. Final version (some minor corrections from previous version)

We construct an equivalence of $E_{2}$ algebras between two models for the Thom spectrum of the free loop space that are related by derived Koszul duality. To do this, we describe the functoriality and invariance properties of topological Hochschild cohomology.

Topological periodic cyclic homology (i.e., $\mathbb{T}$-Tate fixed points of $THH$) has the structure of a strong symmetric monoidal functor of smooth and proper dg categories over a perfect field of finite characteristic., Comment: Final version

Let $p\in \mathbb{Z}$ be an odd prime. We prove a spectral version of Tate-Poitou duality for the algebraic $K$-theory spectra of number rings with $p$ inverted. This identifies the homotopy type of the fiber of the cyclotomic trace $K(\mathcal{O}_{F})^{\scriptscriptstyle\wedge}_{p} \to TC(\mathcal{O}_{F})^{\wedge}_{p}$ after taking a suitably connective cover. As an application, we identify the homotopy type at odd primes of the homotopy fiber of the cyclotomic trace for the sphere spectrum in terms of the algebraic $K$-theory of $\mathbb{Z}$., Comment: This draft omits material in previous drafts including: review of homotopy theory of presheaves of spectra (incl. hypercover descent and models for derived functors); review of pairings in localized and mod-p^n K-theory; proofs of some transfer and pairing folk results in the Thomason SS; details on duality in the splitting of the fiber sequence of the cyclotomic trace. For these and more, see v3

We calculate $\pi_*K(\mathbb S)[1/2]$, the homotopy groups of $K(\mathbb S)$ away from 2, in terms of the homotopy groups of $K(\mathbb Z)$, the homotopy groups of ${\mathbb C}P^\infty_{-1}$, and the homotopy groups of $\mathbb S$. This builds on the work of Waldhausen, who computed the rational homotopy groups (building on work of Quillen and Borel) and Rognes, who calculated the groups at regular primes in terms of the homotopy groups of ${\mathbb C}P^\infty_{-1}$, and the homotopy groups of $\mathbb S$., Comment: Last draft version of this 2018 paper, substantially similar (but not identical to) published version. Includes a correction on p.11

We prove that in the graded commutative ring $K_{*}(\mathbb{S})$, all positive degree elements are multiplicatively nilpotent. The analogous statements also hold for $TC_{*}(\mathbb{S};\mathbb{Z}^{\wedge}_p)$ and $K_{*}(\mathbb{Z})$.

Let R be an E_2 ring spectrum with zero odd dimensional homotopy groups. Every map of ring spectra MU to R is represented by a map of E_2 ring spectra. If 2 is invertible in pi_0(R), then every map of ring spectra MSO to R is represented by a map of E_2 ring spectra.

This paper lays the foundations of an approach to applying Gromov's ideas on quantitative topology to topological data analysis. We introduce the "contiguity complex", a simplicial complex of maps between simplicial complexes defined in terms of the combinatorial notion of contiguity. We generalize the Simplicial Approximation Theorem to show that the contiguity complex approximates the homotopy type of the mapping space as we subdivide the domain. We describe algorithms for approximating the rate of growth of the components of the contiguity complex under subdivision of the domain; this procedure allows us to computationally distinguish spaces with isomorphic homology but different homotopy types.

We describe spectral model category structures on the categories of cyclotomic spectra and $p$-cyclotomic spectra (in orthogonal spectra) with triangulated homotopy categories. We show that the functors $TR$ and $TC$ are corepresentable in these categories. Specifically, the derived mapping spectrum out of the sphere spectrum in the category of cyclotomic spectra corepresents the finite completion of $TC$ and the derived mapping spectrum out of the sphere spectrum in the category of $p$-cyclotomic spectra corepresents the $p$-completion of $TC(-;p)$., Comment: This is a last draft version (May 5, 2015) of an article whose final version was first published in Geometry & Topology in 2015, published by Mathematical Sciences Publishers

We study distributions of persistent homology barcodes associated to taking subsamples of a fixed size from metric measure spaces. We show that such distributions provide robust invariants of metric measure spaces, and illustrate their use in hypothesis testing and providing confidence intervals for topological data analysis.

We prove a conjecture of Hesselholt and Ausoni-Rognes, establishing localization cofiber sequences of spectra for THH(ku) and TC(ku). These sequences support Hesselholt's view of the map l to ku as a "tamely ramified" extension of ring spectra, and validate the hypotheses necessary for Ausoni's simplified computation of V(1)_* K(KU). In order to make sense of the relative term THH(ku|KU) in the cofiber sequence and prove these results, we develop a theory of THH and TC of Waldhausen categories and prove the analogues of Waldhausen's theorems for K-theory. We resolve the longstanding confusion about localization sequences in THH and TC, and establish a specialized devissage theorem., Comment: 100 pages. Revised, corrected, expanded

BP is an E_4 ring spectrum. The E_4 structure is unique up to automorphism.

We describe an iterable construction of THH for an E_n ring spectrum. The reduced version is an iterable bar construction and its n-th iterate gives a model for the shifted cotangent complex at the augmentation, representing reduced topological Quillen homology of an augmented E_n algebra., Comment: Some additional exposition added. Minor corrections

An E_1 (or A-infinity) ring spectrum R has a derived category of modules D_R. An E_2 structure on R endows D_R with a monoidal product. An E_3 structure on R endows the monoidal product with a braiding. If the E_3 structure extends to an E_4 structure then the braided monoidal product is symmetric monoidal., Comment: Minor corrections

Thomason showed that the K-theory of symmetric monoidal categories models all connective spectra. This paper describes a new construction of a permutative category from a Gamma-space, which is then used to re-prove Thomason's theorem and a non-completed variant., Comment: Minor corrections. Final version

We interpret different constructions of the algebraic $K$-theory of spaces as an instance of derived Koszul (or bar) duality and also as an instance of Morita equivalence. We relate the interplay between these two descriptions to the homotopy involution. We define a geometric analog of the Swan theory $G^{\bZ}(\bZ[\pi])$ in terms of $\Sigma^{\infty}_{+} \Omega X$ and show that it is the algebraic $K$-theory of the $E_{\infty}$ ring spectrum $DX=S^{X_{+}}$.

We construct localization cofiber sequences for the topological Hochschild homology (THH) and topological cyclic homology (TC) of spectral categories. Using a global construction of the THH and TC of a scheme in terms of the perfect complexes in a spectrally enriched version of the category of unbounded complexes, the sequences specialize to localization cofiber sequences associated to the inclusion of an open subscheme. These are the targets of the cyclotomic trace from the localization sequence of Thomason-Trobaugh in K-theory. We also deduce versions of Thomason's blow-up formula and the projective bundle formula for THH and TC., Comment: Some important corrections. Major revision of treatment of cyclotomic spectra. Final version

We decompose the K-theory space of a Waldhausen category in terms of its Dwyer-Kan simplicial localization. This leads to a criterion for functors to induce equivalences of K-theory spectra that generalizes and explains many of the criteria appearing in the literature. We show that under mild hypotheses, a weakly exact functor that induces an equivalence of homotopy categories induces an equivalence of K-theory spectra., Comment: Final version

We prove a conjecture of Rognes by establishing a localization cofiber sequence of spectra, K(Z) to K(ku) to K(KU) to Sigma K(Z), for the algebraic K-theory of topological K-theory. We deduce the existence of this sequence as a consequence of a devissage theorem identifying the K-theory of the Waldhausen category of Postnikov towers of modules over a connective A-infinity ring spectrum R with the Quillen K-theory of the abelian category of finitely generated pi_0(R)-modules., Comment: Updated final version. Small change in definition of S' construction and correction to the proof of 2.9

This paper studies the existence of and compatibility between derived change of ring, balanced product, and function module derived functors on module categories in monoidal model categories.

We construct hyper-homology spectral sequences of Z-graded and ROG-graded Mackey functors for Ext and Tor over G-equivariant S-algebras (A-infty ring spectra) for finite groups G. These specialize to universal coefficient and Kunneth spectral sequences.

Every homology or cohomology theory on a category of E-infinity ring spectra is Topological Andre-Quillen homology or cohomology with appropriate coefficients. Analogous results hold for the category of A-infinity ring spectra and for categories of algebras over many other operads.

Finite type nilpotent spaces are weakly equivalent if and only if their singular cochains are quasi-isomorphic as E-infinity algebras. The cochain functor from the homotopy category of finite type nilpotent spaces to the homotopy category of E-infinity algebras is faithful but not full.