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In this paper, we review observational and modelling results on the upwelling in the tropical Atlantic between 10∘ N and 20∘ S. We focus on the physical processes that drive the seasonal variability of surface cooling and the upward nutrient flux required to explain the seasonality of biological productivity. We separately consider the equatorial upwelling system, the coastal upwelling system of the Gulf of Guinea and the tropical Angolan upwelling system. All three tropical Atlantic upwelling systems have in common a strong seasonal cycle, with peak biological productivity during boreal summer. However, the physical processes driving the upwelling vary between the three systems. For the equatorial regime, we discuss the wind forcing of upwelling velocity and turbulent mixing, as well as the underlying dynamics responsible for thermocline movements and current structure. The coastal upwelling system in the Gulf of Guinea is located along its northern boundary and is driven by both local and remote forcing. Particular emphasis is placed on the Guinea Current, its separation from the coast and the shape of the coastline. For the tropical Angolan upwelling, we show that this system is not driven by local winds but instead results from the combined effect of coastally trapped waves, surface heat and freshwater fluxes, and turbulent mixing. Finally, we review recent changes in the upwelling systems associated with climate variability and global warming and address possible responses of upwelling systems in future scenarios.

Several years of moored turbulence measurements from χpods at three sites in the equatorial cold tongues of Atlantic and Pacific Oceans yield new insights into proxy estimates of turbulence that specifically target the cold tongues. They also reveal previously unknown wind dependencies of diurnally-varying turbulence in the near-critical stratified shear layers beneath the mixed layer and above the core of the Equatorial Undercurrent that we have come to understand as deep cycle (DC) turbulence. Isolated by the mixed layer above, theDClayer is only indirectly linked to surface forcing. Yet it varies diurnally in concert with daily changes in heating/cooling. Diurnal composites computed from 10-minute averaged data at fixed χpod depths show that transitions from daytime to nighttime mixing regimes are increasingly delayed with weakening wind stress, τ. These transitions are also delayed with respect to depth such that they follow a descent rate of roughly 6 meters per hour, independent of τ. We hypothesize that this wind-dependent delay is a direct result of wind-dependent diurnal warm layer deepening, which acts as the trigger to DC layer instability by bringing shear from the surface downward but at rates much slower than 6 meters per hour. This delay in initiation of DC layer instability contributes to a reduction in daily averaged values of turbulence dissipation. Both the absence of descending turbulence in the sheared DC layer prior to arrival of the diurnal warm layer shear and the magnitude of the subsequent descent rate after arrival are roughly predicted by laboratory experiments on entrainment in stratified shear flows.

In this paper, we review observational and modelling results on the upwelling in the tropical Atlantic between 10∘ N and 20∘ S. We focus on the physical processes that drive the seasonal variability of surface cooling and the upward nutrient flux required to explain the seasonality of biological productivity. We separately consider the equatorial upwelling system, the coastal upwelling system of the Gulf of Guinea and the tropical Angolan upwelling system. All three tropical Atlantic upwelling systems have in common a strong seasonal cycle, with peak biological productivity during boreal summer. However, the physical processes driving the upwelling vary between the three systems. For the equatorial regime, we discuss the wind forcing of upwelling velocity and turbulent mixing, as well as the underlying dynamics responsible for thermocline movements and current structure. The coastal upwelling system in the Gulf of Guinea is located along its northern boundary and is driven by both local and remote forcing. Particular emphasis is placed on the Guinea Current, its separation from the coast and the shape of the coastline. For the tropical Angolan upwelling, we show that this system is not driven by local winds but instead results from the combined effect of coastally trapped waves, surface heat and freshwater fluxes, and turbulent mixing. Finally, we review recent changes in the upwelling systems associated with climate variability and global warming and address possible responses of upwelling systems in future scenarios.

Highlights: • First eddy–mean flow interaction analysis in the Deep Western Boundary Current between 5°S and 16°S. • Eddy kinetic energy is mainly generated via barotropic instability. • Enhanced upstream mean flow induces intensification in the downstream eddy field. Abstract: Thirty-six years output of a 1/10° eddy-resolving Ocean General Circulation Model are used to analyze the energetics of eddy–mean flow interactions in the Deep Western Boundary Current (DWBC) region of the tropical South Atlantic between 5°S and 16°S. The DWBC flow has a coherent structure between 5°S and 8°S but breaks up into a train of eddies downstream of a region of strong bathymetric curvature at 8°S. In the train of eddies area, the seasonal cycle of eddy kinetic energy (EKE) exhibits poleward phase propagation from May to September. The connection between the seasonal cycle of mean kinetic energy and EKE indicates an intensification of the downstream eddy field associated with enhanced upstream mean flow. The magnitudes of the baroclinic conversion and vertical eddy density flux terms are small in the DWBC core layer depth but somewhat elevated 500 m above and below the core. Eddy processes, including eddy generation and propagation, are accompanied by high EKE and large barotropic conversion. While in the global ocean baroclinic conversion is thought to dominate the energy transfer to EKE, our results suggest that barotropic energy conversion is the primary source of EKE and modulates its variability in the DWBC region of the deeper ocean.

Biological nitrogen fixation is a key process balancing the loss of combined nitrogen in the marine nitrogen cycle. Its relevance in upwelling or high nutrient regions is still under debate, with the few available studies in these regions of the ocean reporting rates that vary widely from below detection limit to as high as 127nmol L−1d−1. In the eastern tropical Atlantic Ocean, two open ocean upwelling systems are active in boreal summer. One is the seasonal Equatorial upwelling, where the residual phosphorus associated with aging upwelled waters is suggested to enhance nitrogen fixation in this season. The other is the Guinea Dome, a thermal upwelling dome, where the information on the variability of nitrogen fixation is scarce and sparse. We conducted two surveys in the central Atlantic Ocean along 23ºW across the Guinea Dome and the Equator from ca. 16ºN to ca. 6ºS in September 2015 and August-September 2016 with high horizontal resolution (20 to 60 nmi between stations). The abundance of Trichodesmium colonies was characterized by an Underwater Vision Profiler 5 and the total biological nitrogen fixation in the euphotic layer was measured using the 15N2 technique. While the highest abundances of Trichodesmium colonies were found in the area of the Guinea Dome (9°−15°N) with a maximum of 3 colonies L−1 near the surface, colonies were almost absent in the Equatorial band between 2°N− 6°S. The highest nitrogen fixation rate was measured at the edges of the Guinea Dome in 2016 (ca. 31 nmol L−1 d−1), where a patchy distribution was unveiled by our high spatial resolution scheme, and diazotrophs thrive on a sufficient supply of both phosphorus and iron. In the Equatorial band, rates were considerably lower ranging from below detection limit to ca. 4 nmol L−1 d−1, with a clear difference in magnitude between 2015 (very low rates) and 2016 (average rates around 2 nmol L−1 d−1) probably due to a differential supply of phosphorus.

The Angolan shelf system represents a highly productive ecosystem. Throughout the year the sea surface is cooler near the coast than further offshore. The lowest sea surface temperature (SST), strongest cross-shore temperature gradient, and maximum productivity occur in austral winter when seasonally prevailing upwelling-favourable winds are weakest. Here, we investigate the seasonal mixed layer heat budget to identify atmospheric and oceanic causes for heat content variability. By using different satellite and in situ data, we derive monthly estimates of surface heat fluxes, mean horizontal advection, and local heat content change. We calculate the heat budgets for the near-coastal and offshore regions separately to explore processes that lead to the observed SST differences. The results show that the net surface heat flux warms the coastal ocean stronger than further offshore, thus acting to damp spatial SST differences. Mean horizontal heat advection is dominated by meridional advection of warm water along the Angolan coast. However, its contribution to the heat budget is small. Ocean turbulence data suggest that the heat flux, due to turbulent mixing across the base of the mixed layer, is an important cooling term. This turbulent cooling, being strongest in shallow shelf regions, is capable of explaining the observed negative cross-shore temperature gradient. The residuum of the mixed layer heat budget and uncertainties of budget terms are discussed.

We reconstruct the 3-D meso- and submesoscale structure of selected oceanic eddies from ship-based field observations of current velocity, in the mixed layer and below, in order to explore two main questions: what information on upwelling/downwelling can be derived; and inside what eddy radius is water trapped and transported.The selected eddies have been intensively surveyed during the collaborative project REEBUS (Role of Eddies in the Carbon Pump of Eastern Boundary Upwelling Systems) in the eastern tropical North Atlantic. Making use of vertical sections of current velocities we fit an optimum eddy-like structure to the data. The structure is assumed a slowly drifting, circular symmetric but not necessarily linear velocity field, separated in horizontal layers. The composition of the reconstructed layers provides a 3-D velocity structure which is used to calculate derived variables as vorticity and divergence. We find submesoscale divergence patterns which support vertical flux occurring in the eddies. We further use current velocities from a high-resolution regional model based on ROMS to validate the method and estimate uncertainties.

The variability of the Atlantic Meridional Overturning Circulation (AMOC) and the Meridional Freshwater Transport (Mov) at 24°N, 11°S, and 30°S, simulated with the GFDL-CM3 model under the historical (1860–2005) and RCP 4.5 and 8.5 scenarios (2006–2100) are examined. The results are compared with the climatology and observations in the search for salinity biases that would compromise the accuracy of the state of the future climate predicted by this model. The AMOC wavelet analysis shows a predominant decadal variability at 24°N, whereas the annual signal is more prominent in the South Atlantic. The Mov magnitude varies considerably among the latitudes: increasing at 24°N, rather stable at 11°S and decreasing at 30°S. Such a pattern is followed by an AMOC weakening regardless of the latitude until the end of the 21st century, indicating that a reduction in Mov in the southern South Atlantic and an increase in the North Atlantic are potential drivers of the AMOC destabilization. Both model and observations agree on the stability of the circulation, even though the model projects a stronger AMOC than the latter. Besides the AMOC weakening, a shoaling of its upper limb is also observed. Salinity biases were found mostly in the South Atlantic in the upper 1000 m of the water column, with the model results significantly deviating from the observations and climatology in the mid-Atlantic, especially at 30°S. Possible causes for the abovementioned results, including potential drivers for salinity biases are discussed.

International audience; Organic matter (OM) plays a significant role in the formation of oxygen minimum zones (OMZs) and associated biogeochemical cycling. OM supply processes to the OMZ include physical transport, particle formation, and sinking as well as active transport by migrating zooplankton and nekton. In addition to the availability of oxygen and other electron acceptors, the remineralization rate of OM is controlled by its biochemical quality. Enhanced microbial respiration of OM can induce anoxic microzones in an otherwise oxygenated water column. Reduced OM degradation under low-oxygen conditions, on the other hand, may increase the CO 2 storage time in the ocean. Understanding the interdependencies between OM and oxygen cycling is of high relevance for an ocean facing deoxygenation as a consequence of global warming. In this review, we describe OM fluxes into and cycling within two large OMZs associated with eastern boundary upwelling systems that differ greatly in the extent of oxygen loss: the highly oxygen-depleted OMZ in the tropical South Pacific and the moderately hypoxic OMZ in the tropical North Atlantic. We summarize new findings from a large German collaborative research project, Collaborative Research Center 754 (SFB 754), and identify knowledge gaps and future research priorities. Expected final online publication date for the Annual Review of Marine Science, Volume 14 is January 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.

The turbulent dissipation rate ε is a key parameter to many oceanographic processes. Recently, gliders have been increasingly used as a carrier for microstructure sensors. Compared to conventional ship-based methods, glider-based microstructure observations allow for long-duration measurements under adverse weather conditions and at lower costs. The incident water velocity U is an input parameter for the calculation of the dissipation rate. Since U cannot be measured using the standard glider sensor setup, the parameter is normally computed from a steady-state glider flight model. As ε scales with U2 or U4, depending on whether it is computed from temperature or shear microstructure, respectively, flight model errors can introduce a significant bias. This study is the first to use measurements of in situ glider flight, obtained with a profiling Doppler velocity log and an electromagnetic current meter, to test and calibrate a flight model, extended to include inertial terms. Compared to a previously suggested flight model, the calibrated model removes a bias of approximately 1 cm s−1 in the incident water velocity, which translates to roughly a factor of 1.2 in estimates of the dissipation rate. The results further indicate that 90% of the estimates of the dissipation rate from the calibrated model are within a factor of 1.1 and 1.2 for measurements derived from microstructure temperature sensors and shear probes, respectively. We further outline the range of applicability of the flight model.

The tropical Atlantic upper-ocean circulation experiences multiannual to decadal changes associated with different climate modes and is simultaneously adjusting to climate warming. The most energetic current in the tropical Atlantic is the Equatorial Undercurrent (EUC), which flows eastwards along the Equator. On the basis of long-term moored observations, we show that the EUC strengthened by more than 20% from 2008 to 2018. The intensification of the EUC is associated with increasing subsurface oxygen concentrations and a thickening of the upper-ocean oxygenated layer in the equatorial Atlantic. These changes counteract climate-warming-induced deoxygenation in the region. The EUC strengthening is found to be mainly forced by trade wind changes in the western tropical North Atlantic. A 60-yr dataset reveals that the recent oxygen increase in the upper equatorial Atlantic is associated with multidecadal variability. This variability is characterized by low oxygen concentrations in the 1990s and early 2000s, and high oxygen concentrations in the 1960s and 1970s. The observed oxygen variability seems to be linked to a compression and expansion of the habitat of tropical pelagic fish, and must be accounted for when evaluating the possible consequences of deoxygenation for marine ecosystems and fisheries. Recent strengthening of the Equatorial Undercurrent counteracts warming-induced deoxygenation in the equatorial Atlantic, according to an analysis of long-term moored observations.

The Angolan shelf system represents a highly productive ecosystem that exhibits pronounced seasonal variability. Productivity peaks in austral winter when seasonally prevailing upwelling favorable winds are weakest. Thus, other processes than local wind-driven upwelling contribute to the near-coastal cooling and nutrient supply during this season. Possible processes that lead to changes of the mixed-layer heat content does not only include local mechanism but also the passage of remotely forced coastally trapped waves. Understanding the driving mechanisms of changes in the mixed-layer heat content that may be locally or remotely forced is also vital for understanding of upward nutrient supply and biological productivity off Angola. Here, we investigate the seasonal mixed layer heat budget by analyzing atmospheric and oceanic causes for heat content variability. By using different satellite and in-situ data, we derive monthly estimates of surface heat fluxes, horizontal advection, diapycnal heat fluxes and local heat storage. The results show that the contribution of horizontal heat advection is small. When considering surface heat fluxes and horizontal heat advection only, the local mixed layer heat budget cannot be closed and the resulting residuum increases closer to the coast. Diapycnal heat fluxes at the base of the mixed layer and uncertainties of surface heat fluxes are suggested to explain the residuum. Our data suggests that the magnitude of diapycnal heat fluxes is controlled by stratification with stronger stratification reducing diapycnal heat fluxes. We conclude that local and remote impacts on stratification need to be examined in order to understand the mixed layer heat budget variability off Angola.

The direct response of the tropical mixed layer to near-inertial waves (NIWs) has only rarely been observed. Here, we present upper-ocean turbulence data that provide evidence for a strongly elevated vertical diffusive heat flux across the base of the mixed layer in the presence of a NIW, thereby cooling the mixed layer at a rate of 244 W m−2 over the 20 h of continuous measurements. We investigate the seasonal cycle of strong NIW events and find that despite their local intermittent nature, they occur preferentially during boreal summer, presumably associated with the passage of atmospheric African Easterly Waves. We illustrate the impact of these rare but intense NIW induced mixing events on the mixed layer heat balance, highlight their contribution to the seasonal evolution of sea surface temperature, and discuss their potential impact on biological productivity in the tropical North Atlantic. How the tropical mixed layer of the ocean reacts to near-inertial waves has rarely been observed directly. Here, the authors present new data that shows strongly elevated vertical diffusive heat flux in the presence of near-inertial waves, causing a cooling of the mixed layer that is particularly strong in summer.

In austral winter, biological productivity at the Angolan shelf reaches its maximum. The alongshore winds, however, reach their seasonal minimum suggesting that processes other than local wind-driven upwelling contribute to near-coastal cooling and upward nutrient supply, one possibility being mixing induced by internal tides (ITs). Here, we apply a three-dimensional ocean model to simulate the generation, propagation and dissipation of ITs at the Angolan continental slope and shelf. Model results are validated against moored acoustic Doppler current profiler and other observations. Simulated ITs are mainly generated in regions with a critical/supercritical slope typically between the 200- and 500-m isobaths. Mixing induced by ITs is found to be strongest close to the coast and gradually decreases offshore thereby contributing to the establishment of cross-shore temperature gradients. The available seasonal coverage of hydrographic data is used to design simulations to investigate the influence of seasonally varying stratification characterized by low stratification in austral winter and high stratification in austral summer. The results show that IT characteristics, such as their wavelengths, sea surface convergence patterns and baroclinic structure, have substantial seasonal variations and additionally strong spatial inhomogeneities. However, seasonal variations in the spatially-averaged generation, onshore flux and dissipation of IT energy are weak. By evaluating the change of potential energy, it is shown, nevertheless, that mixing due to ITs is more effective during austral winter. We argue this is because the weaker background stratification in austral winter than in austral summer acts as a preconditioning for IT mixing.

This file includes simulations of internal tides on the Angolan Shelfwithdifferent stratifications and with different resolutions. Also, a case without forcing is included.

During the collaborative project "Role of Eddies in the Carbon Pump of Eastern Boundary Upwelling Systems" (REEBUS), that took place in the eastern tropical North Atlantic in 2019, three cyclonic mesoscale eddies were intensely surveyed by ship and autonomous systems. The three eddies were located at different distances to the coast, the most intense of them (vorticity about 0.5 times f) was found in lee of the Cabo Verdian island of Fogo. Here we present the reconstruction of the 3-D structure for the three eddies from ship ADCP and hydrographic sections. Divergence estimates suggest the existence of a downwelling cell in the center of all three eddies. This cell extends from below the thermocline down to some hundred meters, at a diameter of about 10 nautical miles. Surface signatures of the eddies indicate elliptic and oscillating behavior which is further investigated using the interior ocean data. In this work we also explore the limitations of section-based ocean mesoscale eddy reconstructions.

In austral winter, biological productivity at the Angolan shelf reaches its maximum. The alongshore winds, however, reach their seasonal minimum suggesting that processes other than local wind-driv...

In the framework of the Peruvian Oxygen minimum zone System Tracer Release Experiment (POSTRE) about 70 kg of trifluoromethyl sulfur pentafluoride (SF5CF3) was injected into the bottom boundary layer of the upper Peruvian continental slope at 250m depth in October 2015. Three different injection sites, at 10°45’S, 12°20’S and 14°S were selected. At the tracer release sites and due to tide-topography interaction, mixing above the upper continental slope of Peru was intensified. Turbulent dissipation rates increase by about an order of magnitude in lower 50 to 100m above the bottom. During previous tracer release experiments, where tracer was injected into the stratified mixing layer above the bottom boundary layer, a change of the center of mass toward higher densities resulted. Newer theories suggest that this diapycnal downwelling is balanced by a diapycnal upwelling within the bottom boundary layer. Indeed, during the tracer survey it was found that the density of tracer’s center of mass had decreased by 0.13 kg m-3. This corresponds to an upward displacement of 70-100m. Using microsctructure shear data from 8 cruises, we obtain a diapycnal velocity of about 0.5 m day-1 within the bottom boundary layer. This suggests that on average, the tracer was trapped within the bottom boundary layer for a period between 1.5 and 3 month. Overall, our tracer study provides the first observational evidence of diapycnal upwelling occurring within the bottom boundary layer of a bottom enhanced mixing environment and supports recent ideas of a vigorous global overturning circulation.

The Angolan and Peruvian shelves are located in upwelling regions along the eastern boundaries of the tropical Atlantic and Pacific Oceans. They are sites of important fisheries supported by high productivity which is driven by fluxes of nutrients from deep to near surface water along the coast. Mixing associated with internal waves is believed to play a role in this process. Recent field observations have shown the presence of an active internal wave field that includes internal solitary waves. In this talk results of high-resolution two-dimensional simulations of internal wave generation by tide-topography interactions on the Angolan and Peruvian shelves are presented. The simulations show the generation of internal wave beams at near-critical slopes and the generation of high-frequency internal solitary waves. The high-frequency IW spectrum is enhanced when small scale bathymetric ripples are included. Wave generation during winter and summer stratifications will be compared.

The upper ocean circulation of the tropical Atlantic experiences long-term changes associated with different climate modes, but is at the same time expected to adjust to changes in the meridional overturning forced by climate warming. While observations of decadal variability of the surface circulation are generally based on satellite altimetry, direct observations of subsurface circulation mostly rely on very few long-term mooring sites typically covering energetic currents such as the Atlantic Equatorial Undercurrent (EUC). Here we focus on the period 2006 to 2018 that was covered by an intense field program including oxygen and circulation observations in the equatorial and tropical North Atlantic. During the observational period, a strengthening of the EUC of about 20% was detected based on data of an equatorial current meter mooring at 23°W. The EUC strengthening is related to a similar strengthening of the subtropical cells (STC). These STC changes were forced by a trade wind intensification in both hemispheres, however, more pronounced in the north and in the western basin. The STC strengthening is found to be consistent with the observed 12-year oxygen increase in the equatorial band (i.e. south of about 5°N) in the upper 400m obtained from repeat ship sections along 23°W. Such strongly enhanced oxygen levels relative to climatological mean were also observed in the upper 300-400m during a recent cruise along the whole Atlantic equator from Africa to South America. Our results are discussed with regard to the superposition of internal climate variability likely associated to a recent phase shift in the Atlantic multidecadal variability and changes due to global warming including ocean deoxygenation and enhanced thermocline stratification.

The eastern boundary region of the southeast Pacific Ocean hosts one of the world's most dynamic and productive upwelling systems with an associated oxygen minimum zone (OMZ). The variability in downward export fluxes in this region, with strongly varying surface productivity, upwelling intensities and water column oxygen content, is however poorly understood. Thorium-234 (234Th) is a powerful tracer to study the dynamics of export fluxes of carbon and other elements, yet intense advection and diffusion in nearshore environments impact the assessment of depth-integrated 234Th fluxes when not properly evaluated. Here we use ADCP current velocities, satellite wind stress and in situ microstructure measurements to determine the magnitude of advective and diffusive fluxes over the entire 234Th flux budget at 25 stations from 11° S to 16° S in the Peruvian OMZ. Contrary to findings along the GEOTRACES P16 eastern section, our results showed that weak surface wind stress during our cruises induced low upwelling rates and minimal upwelling 234Th fluxes, whereas vertical diffusive 234Th fluxes were important only at a few shallow shelf stations. Similarly, horizontal advective and diffusive 234Th fluxes were negligible due to small alongshore 234Th gradients. Our data indicated a poor correlation between seawater 238U activity and salinity. Assuming a linear relationship between the two would lead to significant underestimations of the total 234Th flux by up to 40 % in our study. Proper evaluation of both physical transport and variability in 238U activity is thus crucial in coastal 234Th flux studies. Finally, we showed large temporal variations on 234Th residence times across the Peruvian upwelling zone, and cautioned future carbon export studies to take these temporal changes into consideration while evaluating carbon export efficiency.

The causes of the seasonal cycle of vertical turbulent cooling at the base of the mixed layer are assessed using observations from moored buoys in the tropical Atlantic Intertropical Convergence Zone (ITCZ) (4°N, 23°W) and trade wind (15°N, 38°W) regions together with mixing parameterizations and a one-dimensional model. At 4°N the parameterized turbulent cooling rates during 2017–2018 and 2019 agree with indirect estimates from the climatological mooring heat budget residual: both show mean cooling of 25–30 W m (Formula presented.) during November–July, when winds are weakest and the mixed layer is thinnest, and 0–10 W m (Formula presented.) during August–October. Mixing during November–July is driven by variability on multiple time scales, including subdiurnal, near-inertial, and intraseasonal. Shear associated with tropical instability waves (TIWs) is found to generate mixing and monthly mean cooling of 15–30 W m (Formula presented.) during May–July in 2017 and 2019. At 15°N the seasonal cycle of turbulent cooling is out of phase compared to 4°N, with largest cooling of up to 60 W m (Formula presented.) during boreal fall. However, the relationships between wind speed, mixed layer depth, and turbulent mixing are similar: weaker mean winds and a thinner mixed layer in the fall are associated with stronger mixing and turbulent cooling of SST. These results emphasize the importance of seasonal modulations of mixed layer depth at both locations and shear from TIWs at 4°N.

A strong warm event occurred in the southeastern tropical Atlantic Ocean off Angola and Namibia in January and February 2016 with sea surface temperature anomalies reaching 3 °C. In contrast to classical Benguela Nino events, the analysis of various direct observations indicates that the warming was not predominantly forced by an equatorial Kelvin wave exciting a coastally trapped wave but instead resulted from a combination of local processes that are related to (1) a weakening of the alongshore, i.e. mainly southerly, winds and (2) enhanced freshwater input through local precipitation and river discharge. Consistent with the weakened winds, we find a reduction in latent heat loss from the ocean and a poleward surface current anomaly. The surface freshening, which is detected in satellite observations of sea surface salinity, caused a very shallow mixed layer and enhanced upper ocean stratification. This is supported by the analysis of the velocity structure of the Angola Current at 11°S, which shows that at the time of the event subsurface velocities were directed northward while surface velocities were directed southward. The shallow layer of warm and fresh surface water was thus advected poleward by the surface current. In addition, a reduction of the local upwelling and the formation of a barrier layer that inhibits the entrainment of cool subsurface waters into the surface mixed layer might have contributed to the warm surface anomaly. The sudden termination of the warm event was accompanied by a re-intensification of southerly winds in March.

Multiyear moored velocity observations of the Angola Current near 11°S reveal a weak southward mean flow superimposed by substantial intraseasonal to seasonal variability, including annual and semiannual cycles with distinct baroclinic structures. In the equatorial Atlantic these oscillations are associated with basin-mode resonances of the fourth and second baroclinic modes, respectively. Here, the role of basin-mode resonance and local forcing for the Angola Current seasonality is investigated. A suite of linear shallow-water models for the tropical Atlantic is employed, each model representing a single baroclinic mode forced at a specific period. The annually and semiannually oscillating forcing is given by 1) an idealized zonally uniform zonal forcing restricted to the equatorial band corresponding to a remote equatorial forcing or 2) realistic, spatially varying Fourier components of wind stress data that include local forcing off Angola, particularly alongshore winds. Model-computed modal amplitudes are scaled to match moored velocity observations from the equatorial Atlantic. The observed annual cycle of alongshore velocity at 11°S is well reproduced by the remote equatorial forcing. Including local forcing slightly improves the agreement between observed and simulated semiannual oscillations at 11°S compared to the purely equatorial forcing. However, the model-computed semiannual cycle lacks amplitude at middepth. This could be the result of either underestimating the strength of the second equatorial basin mode of the fourth baroclinic mode or other processes not accounted for in the shallow-water models. Overall, the findings underline the importance of large-scale linear equatorial wave dynamics for the seasonal variability of the boundary circulation off Angola.

The intraseasonal evolution of physical and biogeochemical properties during a coastal trapped wave event off central Peru is analysed using data from an extensive shipboard observational programme conducted between April and June 2017, and remote sensing data. The poleward velocities in the Peru–Chile Undercurrent were highly variable and strongly intensified to above 0.5 m s−1 between the middle and end of May. This intensification was likely caused by a first-baroclinic-mode downwelling coastal trapped wave, excited by a westerly wind anomaly at the Equator and originating at about 95∘ W. Local winds along the South American coast did not impact the wave. Although there is general agreement between the observed cross-shore-depth velocity structure of the coastal trapped wave and the velocity structure of first vertical mode solution of a linear wave model, there are differences in the details of the two flow distributions. The enhanced poleward flow increased water mass advection from the equatorial current system to the study site. The resulting shorter alongshore transit times between the Equator and the coast off central Peru led to a strong increase in nitrate concentrations, less anoxic water, likely less fixed nitrogen loss to N2 and a decrease of the nitrogen deficit compared to the situation before the poleward flow intensification. This study highlights the role of changes in the alongshore advection due to coastal trapped waves for the nutrient budget and the cumulative strength of N cycling in the Peruvian oxygen minimum zone. Enhanced availability of nitrate may impact a range of pelagic and benthic elemental cycles, as it represents a major electron acceptor for organic carbon degradation during denitrification and is involved in sulfide oxidation in sediments.

The availability of the micronutrient iron (Fe) in surface waters determines primary production, N2 fixation, and microbial community structure in large parts of the world's ocean, and thus it plays an important role in ocean carbon and nitrogen cycles. Eastern boundary upwelling systems and the connected oxygen minimum zones (OMZs) are typically associated with elevated concentrations of redox-sensitive trace metals (e.g., Fe, manganese (Mn), and cobalt (Co)), with shelf sediments typically forming a key source. Over the last 5 decades, an expansion and intensification of OMZs has been observed and this trend is likely to proceed. However, it is unclear how trace-metal (TM) distributions and transport are influenced by decreasing oxygen (O2) concentrations. Here we present dissolved (d; 0.2 µm) TM data collected at seven stations along a 50 km transect in the Mauritanian shelf region. We observed enhanced concentrations of Fe, Co, and Mn corresponding with low O2 concentrations (

The coastal upwelling regime off Peru in December 2012 showed considerable vertical concentration gradients of dissolved nitrous oxide (N2O) across the top few meters of the ocean. The gradients were predominantly downward, i.e., concentrations decreased toward the surface. Ignoring these gradients causes a systematic error in regionally integrated gas exchange estimates, when using observed concentrations at several meters below the surface as input for bulk flux parameterizations – as is routinely practiced. Here we propose that multi-day near-surface stratification events are responsible for the observed near-surface N2O gradients, and that the gradients induce the strongest bias in gas exchange estimates at winds of about 3 to 6 m s−1. Glider hydrographic time series reveal that events of multi-day near-surface stratification are a common feature in the study region. In the same way as shorter events of near-surface stratification (e.g., the diurnal warm layer cycle), they preferentially exist under calm to moderate wind conditions, suppress turbulent mixing, and thus lead to isolation of the top layer from the waters below (surface trapping). Our observational data in combination with a simple gas-transfer model of the surface trapping mechanism show that multi-day near-surface stratification can produce near-surface N2O gradients comparable to observations. They further indicate that N2O gradients created by diurnal or shorter stratification cycles are weaker and do not substantially impact bulk emission estimates. Quantitatively, we estimate that the integrated bias for the entire Peruvian upwelling region in December 2012 represents an overestimation of the total N2O emission by about a third, if concentrations at 5 or 10 m depth are used as surrogate for bulk water N2O concentration. Locally, gradients exist which would lead to emission rates overestimated by a factor of two or more. As the Peruvian upwelling region is an N2O source of global importance, and other strong N2O source regions could tend to develop multi-day near-surface stratification as well, the bias resulting from multi-day near-surface stratification may also impact global oceanic N2O emission estimates.

The eastern tropical South Pacific (ETSP) hosts the Peruvian upwelling system, which represents one of the most productive areas in the world ocean. High primary production followed by rapid heterotrophic utilization of organic matter supports the formation of one of the most intense oxygen minimum zones (OMZs) in the world ocean, where dissolved oxygen (O2) concentrations reach less than 1 µmol kg−1. The high productivity leads to an accumulation of dissolved organic matter (DOM) in the surface layers that may serve as a substrate for heterotrophic respiration. However, the importance of DOM utilization for O2 respiration in the Peruvian upwelling system in general and for shaping the upper oxycline in particular remains unclear so far. This study reports the first estimates of diapycnal fluxes and supply of O2, dissolved organic carbon (DOC), dissolved organic nitrogen, dissolved hydrolysable amino acids (DHAA) and dissolved combined carbohydrates (DCCHO) for the ETSP off Peru. Diapycnal flux and supply estimates were obtained by combining measured vertical diffusivities and solute concentration gradients. They were analysed together with the molecular composition of DCCHO and DHAA to infer the transport of labile DOM into the upper OMZ and the potential role of DOM utilization for the attenuation of the diapycnal O2 flux that ventilates the OMZ. The observed diapycnal O2 flux (50 mmol O2 m−2 d−1 at maximum) was limited to the upper 80 m of the water column; the O2 supply of ∼1 µmol kg−1 d−1 was comparable to previously published O2 consumption rates for the North and South Pacific OMZs. The diapycnal DOM flux (31 mmol C m−2 d−1 at maximum) was limited to ∼30 m water depth, suggesting that the labile DOM is extensively consumed within the upper part of the shallow oxycline off Peru. The analyses of DCCHO and DHAA composition support this finding, suggesting that DOM undergoes comprehensive remineralization within the upper part of the oxycline, as the DOM within the core of the OMZ was found to be largely altered. Estimated by a simple equation for carbon combustion, aerobic respiration of DCCHO and DHAA, supplied by diapycnal mixing (0.46 µmol kg−1 d−1 at maximum), could account for up to 38 % of the diapycnal O2 supply in the upper oxycline, which suggests that DOM utilization plays a significant role for shaping the upper oxycline in the ETSP.

The tropical Atlantic exerts a major influence in climate variability through strong air-sea interactions. Within this region, the eastern side of the equatorial band is characterized by strong seasonality, whereby the most prominent feature is the annual development of the Atlantic Cold Tongue (ACT). This band of low sea surface temperatures (∼22-23°C) is typically associated with upwelling-driven enhancement of surface nutrient concentrations and primary production. Based on a detailed investigation of the distribution and sea-to-air fluxes of N2O in the eastern equatorial Atlantic (EEA), we show that the onset and seasonal development of the ACT can be clearly observed in surface N2O concentrations, which increase progressively as the cooling in the equatorial region proceeds during spring-summer. We observed a strong influence of the surface currents of the EEA on the N2O distribution, which allowed identifying “high” and “low” concentration regimes that were, in turn, spatially delimited by the extent of the warm eastward-flowing North Equatorial Countercurrent and the cold westward-flowing South Equatorial Current. Estimated sea-to-air fluxes of N2O from the ACT (mean 5.18±2.59 µmol m−2 d−1) suggests that in May-July 2011 this cold-water band doubled the N2O efflux to the atmosphere with respect to the adjacent regions, highlighting its relevance for marine tropical emissions of N2O. This article is protected by copyright. All rights reserved.

Highlights • Sulphidic event on the shelf resulted in a temporal imbalance of the benthic N cycle. • Bacterial NOx storage is a major source of oxidative power during euxinia. • Peruvian shelf and upper slope sediments are strong recycling sites of fixed N. Abstract Oxygen minimum zones (OMZ) are key regions for fixed nitrogen loss in both the sediments and the water column. During this study, the benthic contribution to N cycling was investigated at ten sites along a depth transect (74–989 m) across the Peruvian OMZ at 12 °S. O2 levels were below detection limit down to ~ 500 m. Benthic fluxes of N2, NO3–, NO2–, NH4+, H2S and O2 were measured using benthic landers. Flux measurements on the shelf were made under extreme geochemical conditions consisting of a lack of O2, NO3– and NO2– in the bottom water and elevated seafloor sulphide release. These particular conditions were associated with a large imbalance in the benthic nitrogen cycle. The sediments on the shelf were densely covered by filamentous sulphur bacteria Thioploca, and were identified as major recycling sites for DIN releasing high amounts of NH4+up to 21.2 mmol m−2 d−1 that were far in excess of NH4+release by ammonification. This difference was attributed to dissimilatory nitrate (or nitrite) reduction to ammonium (DNRA) that was partly being sustained by NO3– stored within the sulphur oxidizing bacteria. Sediments within the core of the OMZ (ca. 200 to 400 m) also displayed an excess flux of N of 3.5 mmol m−2 d−1 mainly as N2. Benthic nitrogen and sulphur cycling in the Peruvian OMZ appears to be particularly susceptible to bottom water fluctuations in O2, NO3−and NO2−, and may accelerate the onset of pelagic euxinia when NO3−and NO2−become depleted.

Ocean observations are analysed in the framework of Collaborative Research Center 754 (SFB 754) "Climate-Biogeochemistry Interactions in the Tropical Ocean" to study (1) the structure of tropical oxygen minimum zones (OMZs), (2) the processes that contribute to the oxygen budget, and (3) long-term changes in the oxygen distribution. The OMZ of the eastern tropical North Atlantic (ETNA), located between the well-ventilated subtropical gyre and the equatorial oxygen maximum, is composed of a deep OMZ at about 400 m in depth with its core region centred at about 20° W, 10° N and a shallow OMZ at about 100 m in depth, with the lowest oxygen concentrations in proximity to the coastal upwelling region off Mauritania and Senegal. The oxygen budget of the deep OMZ is given by oxygen consumption mainly balanced by the oxygen supply due to meridional eddy fluxes (about 60%) and vertical mixing (about 20%, locally up to 30%). Advection by zonal jets is crucial for the establishment of the equatorial oxygen maximum. In the latitude range of the deep OMZ, it dominates the oxygen supply in the upper 300 to 400 m and generates the intermediate oxygen maximum between deep and shallow OMZs. Water mass ages from transient tracers indicate substantially older water masses in the core of the deep OMZ (about 120–180 years) compared to regions north and south of it. The deoxygenation of the ETNA OMZ during recent decades suggests a substantial imbalance in the oxygen budget: about 10% of the oxygen consumption during that period was not balanced by ventilation. Long-term oxygen observations show variability on interannual, decadal and multidecadal timescales that can partly be attributed to circulation changes. In comparison to the ETNA OMZ, the eastern tropical South Pacific OMZ shows a similar structure, including an equatorial oxygen maximum driven by zonal advection but overall much lower oxygen concentrations approaching zero in extended regions. As the shape of the OMZs is set by ocean circulation, the widespread misrepresentation of the intermediate circulation in ocean circulation models substantially contributes to their oxygen bias, which might have significant impacts on predictions of future oxygen levels.

The formation of a subsurface anticyclonic eddy in the Peru-Chile Undercurrent (PCUC) in January and February 2013 is investigated using a multi-platform four-dimensional observational approach. Research vessel, multiple glider and mooring-based measurements were conducted in the Peruvian upwelling regime near 12°30'S. The dataset consists of > 10000 glider profiles and repeated vessel-based hydrography and velocity transects. It allows a detailed description of the eddy formation and its impact on the near-coastal salinity, oxygen and nutrient distributions. In early January, a strong PCUC with maximum poleward velocities of ∼ 0.25 m/s at 100 to 200 m depth was observed. Starting on January 20 a subsurface anticyclonic eddy developed in the PCUC downstream of a topographic bend, suggesting flow separation as the eddy formation mechanism. The eddy core waters exhibited oxygen concentrations

The squat lobster Pleuroncodes monodon is a key species of the highly productive, but oxygen-poor upwelling system of the Eastern Tropical South Pacific. Observations of P. monodon in the water column off Peru have led to the hypothesis that anoxic conditions force this otherwise primarily benthic species to adopt a pelagic lifestyle. Here we show that off Peru, P. monodon can be found in the oxygenated surface water, but also on the anoxic seafloor. Our physiological experiments demonstrate that juvenile and adult specimens have a very low critical respiratory pO(2) of 0.5 kPa and that adults survive anoxia for 30.5-70.5 h. Anoxic conditions at the seafloor should therefore force P. monodon to regularly migrate to the oxic surface layer in order to restore energy reserves and recycle metabolic end products of anaerobic metabolism. It was recently estimated that the ammonium supply mediated by diel vertical migrations (DVMs) of zooplankton and nekton considerably fuels bacterial anaerobic ammonium oxidation-a major loss process for fixed nitrogen in the ocean. These estimates were based on the implicit assumption that anoxia does not result in a down-regulation of ammonium excretion. We here show that exposure to anoxia elicits a fourfold reduction in ammonium excretion from 2.1 +/- 0.6 mu mol h(-1) g dry weight(-1) under normoxic to 0.5 +/- 0.6 mu mol h(-1) g DW-1 under anoxic conditions in P. monodon. Estimates of ammonium supply to the anoxic core of oxygen minimum zones via DVM therefore are likely too high.

Highlights: • Abyssal AUV-based microstructure measurements over rough topography. • Indications for hydraulic control downstream of a sill in a Mid-Atlantic Ridge valley. • Asymmetric distribution of dissipation rate and elevated density variability. Abstract: Diapycnal mixing in the deep ocean is known to be much stronger in the vicinity of rough topography of mid-ocean ridges than above abyssal plains. In this study a horizontally profiling microstructure probe attached to an autonomous underwater vehicle (AUV) is used to infer the spatial distribution of the dissipation rate of turbulent kinetic energy (e ) in the central valley of the Mid-Atlantic Ridge. To the authors’ knowledge, this is the first successful realization of a horizontal, deep-ocean microstructure survey. More than 22 h of horizontal, near-bottom microstructure data from the Lucky Strike segment (37 °N) are presented. The study focuses on a channel with unidirectional sill overflow. Density was found to decrease along the channel following the mean northward flow of 3 to 8 cm/s. The magnitude of the rate of turbulent kinetic energy dissipation was distributed asymmetrically relative to the position of the sill. Elevated dissipation rates were present in a segment 1-4 km downstream (north) of the sill with peak values of 1⋅10−71⋅10−7 W/kg. Large flow speeds and elevated density finestructure were observed within this segment. Lowered hydrographic measurements indicated unstable stratification in the same region. The data indicate that hydraulic control is established at least temporarily. Inside the channel at wavelengths between 1 m and 250 m the slopes of AUV-inferred horizontal temperature gradient spectra were found to be consistent with turbulence in the inertial-convective subrange. Integrated temperature gradient variance in this wavelength interval is consistent with an e2/3 dependence. The results illustrate that deep-reaching AUVs are a useful tool to study deep ocean turbulence over complex terrain where free-falling and lowered turbulence measurements are inefficient and time-consuming.