Search

Accurate geometric modeling of blood vessel lumen from 3D images is crucial for vessel quantification as part of the diagnosis, treatment, and monitoring of vascular diseases. Our method, unlike other approaches which assume a circular or elliptical vessel cross-section, employs parametric B-splines combined with image formation system equations to accurately localize the highly curved lumen boundaries. This approach avoids the need for image segmentation, which may reduce the localization accuracy due to spatial discretization. We demonstrate that the model parameters can be reliably identified by a feedforward neural network which, driven by the cross-section images, predicts the parameter values many times faster than a reference least-squares (LS) model fitting algorithm. We present and discuss two example applications, modeling the lower extremities of artery–vein complexes visualized in steady-state contrast-enhanced magnetic resonance images (MRI) and the coronary arteries pictured in computed tomography angiograms (CTA). Beyond applications in medical diagnosis, blood-flow simulation and vessel-phantom design, the method can serve as a tool for automated annotation of image datasets to train machine-learning algorithms. [ABSTRACT FROM AUTHOR]

The purpose of this study was to differentiate acute from chronic myocardial infarction using machine learning techniques and texture features extracted from cardiac magnetic resonance imaging (MRI). The study group comprised 22 cases with acute myocardial infarction (AMI) and 22 cases with chronic myocardial infarction (CMI). Cine and late gadolinium enhancement (LGE) MRI were analyzed independently to differentiate AMI from CMI. A total of 279 texture features were extracted from predefined regions of interest (ROIs): the infarcted area on LGE MRI, and the entire myocardium on cine MRI. Classification performance was evaluated by a nested cross-validation approach combining a feature selection technique with three predictive models: random forest, support vector machine (SVM) with Gaussian Kernel, and SVM with polynomial kernel. The polynomial SVM yielded the best classification performance. Receiver operating characteristic curves provided area-under-the-curve (AUC) (mean±standard deviation) of 0.86±0.06 on LGE MRI using 72 features; AMI sensitivity=0.81±0.08 and specificity=0.84±0.09. On cine MRI, AUC=0.82±0.06 using 75 features; AMI sensitivity=0.79±0.10 and specificity=0.80±0.10. We concluded that texture analysis can be used for differentiation of AMI from CMI on cardiac LGE MRI, and also on standard cine sequences in which the infarction is visually imperceptible in most cases. [ABSTRACT FROM AUTHOR]

In this paper we present a numerical framework for validating methods of quantitative analysis of non-invasive MR angiography imaging protocols such as Time-of-Flight (ToF) and Phase Contrast Angiography (PCA). Our study is motivated by the need to reliably and objectively verify blood flow and geometry measurements derived from image data. Both factors are important predictors in diagnosing of carotid artery stenosis. Credibility of the tested image processing methods is verified by comparing their results against reference models designed using integrated flow and MRA imaging simulator. [ABSTRACT FROM PUBLISHER]

Abstract: This paper describes an automatic method for classification and segmentation of different intracardiac masses in tumor echocardiograms. Identification of mass type is highly desirable, since to different treatment options for cardiac tumors (surgical resection) and thrombi (effective anticoagulant treatment) are possible. Correct diagnosis of the character of intracardiac mass in a living patient is a true challenge for a cardiologist; therefore, an objective image analysis method may be useful in heart diseases diagnosis. Image texture analysis is used to distinguish various types of masses. The presented methods assume that image texture encodes important histological features of masses and, therefore, texture numerical parameters enable the discrimination and segmentation of a mass. The recently developed technique based on the network of synchronized oscillators is proposed for the image segmentation. This technique is based on a ‘temporary correlation’ theory, which attempts to explain scene recognition as it would be performed by a human brain. This theory assumes that different groups of neural cells encode different properties of homogeneous image regions (e.g. shape, color, texture). Monitoring of temporal activity of cell groups leads to scene segmentation. A network of synchronized oscillators was successfully used for segmentation of Brodatz textures and medical textured images. The advantage of this network is its ability to detect texture boundaries. It can be also manufactured as a VLSI chip, for a very fast image segmentation. The accuracy of locating of analyzed tissues in the image should be assessed to evaluate a segmentation technique. The new evaluation method based on measurement of physical textured test objects was proposed. Firstly, a series of object images was obtained by the use of different devices (scanner, digital camera and TV camera). Secondly, the images were segmented using oscillator network and feedforward artificial neural network. Thirdly, geometrical test object parameters were estimated and compared to its true values. The experiment was repeated also for ultrasound images, which represented rectangular cross-section of synthetic sponge submerged in water. In addition, classification and segmentation of selected benign tumor echocardiograms were performed. Oscillator network was used with network weights defined for both whole texture region and texture boundary detection for the tumor segmentation. The latter method provides much faster segmentation with the similar accuracy. The obtained segmentation results were discussed and compared to the artificial neural network classifier. Finally, it was demonstrated that the network of synchronized oscillators is a reliable tool for the segmentation of the selected intracardiac masses, since it gives a relatively accurate location of analyzed tissues. The advantage of the proposed method is its resistance to changes of the visual information in the analyzed image and to noise and artifacts, often present in echocardiograms. [Copyright &y& Elsevier]

Introduction: The aim of the study was to propose and evaluate textural entropy as a parameter for bone healing assessment. Material and methods: One hundred and twenty radiographs with loss of bone architecture were investigated (a bone defect was circumscribed - ROI DEF). A reference region (ROI REF) of the same surface area as the ROI DEF was placed in a field distant from the defect, where a normal, trabecular pattern of bone structure was well visualized. Data of three time points were investigated: T0 - immediately after the surgical procedure, T1 - 3 months post-op, and T2 - 12 months post-op. Results: Textural entropy as a parameter describing bone structure regeneration was selected based on Fisher coefficient (F) evaluation. F was highest in T0 (3.4) and was decreasing later in T1 (1.7) and T2 (1.0 - means final lack of difference in the structure to reference bone). Textural entropy is a measure of structure disarrangement which in a bone defect region attains minimal value due to structural homogeneity, i.e. low complexity of the texture. The calculated parameter in the investigated material revealed a gradual increase inside the bone defect (p < 0.05), i.e. increase of complexity in a time-dependent manner starting from immediate post-op (T0 = 2.51; T1 = 2.68) up to most complex 1 year post-operational (T2 = 2.73), reaching the reference level of a normal bone. Conclusions: Textural entropy may be useful for computer assisted evaluation of bone regeneration process. The complexity of the texture corresponds to mature trabecular bone formation. [ABSTRACT FROM AUTHOR]

Abstract: Modern medical diagnosis utilizes techniques of visualization of human internal organs (CT, MRI) or of its metabolism (PET). However, evaluation of acquired images made by human experts is usually subjective and qualitative only. Quantitative analysis of MR data, including tissue classification and segmentation, is necessary to perform e.g. attenuation compensation, motion detection, and correction of partial volume effect in PET images, acquired with PET/MR scanners. This article presents briefly a MaZda software package, which supports 2D and 3D medical image analysis aiming at quantification of image texture. MaZda implements procedures for evaluation, selection and extraction of highly discriminative texture attributes combined with various classification, visualization and segmentation tools. Examples of MaZda application in medical studies are also provided. [Copyright &y& Elsevier]

Abstract: A method is proposed for quantitative description of blood-vessel trees, which can be used for tree classification and/or physical parameters indirect monitoring. The method is based on texture analysis of 3D images of the trees. Several types of trees were defined, with distinct tree parameters (number of terminal branches, blood viscosity, input and output flow). A number of trees were computer-simulated for each type. 3D image was computed for each tree and its texture features were calculated. Best discriminating features were found and applied to 1-NN nearest neighbor classifier. It was demonstrated that (i) tree images can be correctly classified for realistic signal-to-noise ratio, (ii) some texture features are monotonously related to tree parameters, (iii) 2D texture analysis is not sufficient to represent the trees in the discussed sense. Moreover, applicability of texture model to quantitative description of vascularity images was also supported by unsupervised exploratory analysis. Eventually, the experimental confirmation was done, with the use of confocal microscopy images of rat brain vasculature. Several classes of brain tissue were clearly distinguished based on 3D texture numerical parameters, including control and different kinds of tumours – treated with NG2 proteoglycan to promote angiogenesis-dependent growth of the abnormal tissue. The method, applied to magnetic resonance imaging e.g. real neovasculature or retinal images can be used to support noninvasive medical diagnosis of vascular system diseases. [Copyright &y& Elsevier]

This paper undertakes the problem of quantitative inspection of 3D vascular tree images. Through the use of cluster analysis, it confirms the correspondence between texture descriptors and various vessel system parameters, such as blood viscosity and the number of tree branches. Moreover, it is shown that unsupervised selection of significant texture parameters, especially in the synthetic data sets corresponding to noisy images, becomes feasible if the search for relevant attributes is guided by the clustering stability-based optimization criterion. [ABSTRACT FROM AUTHOR]

Abstract: MaZda, a software package for 2D and 3D image texture analysis is presented. It provides a complete path for quantitative analysis of image textures, including computation of texture features, procedures for feature selection and extraction, algorithms for data classification, various data visualization and image segmentation tools. Initially, MaZda was aimed at analysis of magnetic resonance image textures. However, it revealed its effectiveness in analysis of other types of textured images, including X-ray and camera images. The software was utilized by numerous researchers in diverse applications. It was proven to be an efficient and reliable tool for quantitative image analysis, even in more accurate and objective medical diagnosis. MaZda was also successfully used in food industry to assess food product quality. MaZda can be downloaded for public use from the Institute of Electronics, Technical University of Lodz webpage. [Copyright &y& Elsevier]

Background and objective Accurate vessel segmentation of magnetic resonance angiography (MRA) images is essential for computer-aided diagnosis of cerebrovascular diseases such as stenosis or aneurysm. The ability of a segmentation algorithm to correctly reproduce the geometry of the arterial system should be expressed quantitatively and observer-independently to ensure objectivism of the evaluation. Methods This paper introduces a methodology for validating vessel segmentation algorithms using a custom-designed MRA simulation framework. For this purpose, a realistic reference model of an intracranial arterial tree was developed based on a real Time-of-Flight (TOF) MRA data set. With this specific geometry blood flow was simulated and a series of TOF images was synthesized using various acquisition protocol parameters and signal-to-noise ratios. The synthesized arterial tree was then reconstructed using a level-set segmentation algorithm available in the Vascular Modeling Toolkit (VMTK). Moreover, to present versatile application of the proposed methodology, validation was also performed for two alternative techniques: a multi-scale vessel enhancement filter and the Chan–Vese variant of the level-set-based approach, as implemented in the Insight Segmentation and Registration Toolkit (ITK). The segmentation results were compared against the reference model. Results The accuracy in determining the vessels centerline courses was very high for each tested segmentation algorithm (mean error rate = 5.6% if using VMTK). However, the estimated radii exhibited deviations from ground truth values with mean error rates ranging from 7% up to 79%, depending on the vessel size, image acquisition and segmentation method. Conclusions We demonstrated the practical application of the designed MRA simulator as a reliable tool for quantitative validation of MRA image processing algorithms that provides objective, reproducible results and is observer independent. [ABSTRACT FROM AUTHOR]

With the development of medical imaging modalities and image processing algorithms, there arises a need for methods of their comprehensive quantitative evaluation. In particular, this concerns the algorithms for vessel tracking and segmentation in magnetic resonance angiography images. The problem can be approached by using synthetic images, where true geometry of vessels is known. This paper presents a framework for computer modeling of MRA imaging and the results of its validation. A new model incorporates blood flow simulation within MR signal computation kernel. The proposed solution is unique, especially with respect to the interface between flow and image formation processes. Furthermore it utilizes the concept of particle tracing. The particles reflect the flow of fluid they are immersed in and they are assigned magnetization vectors with temporal evolution controlled by MR physics. Such an approach ensures flexibility as the designed simulator is able to reconstruct flow profiles of any type. The proposed model is validated in a series of experiments with physical and digital flow phantoms. The synthesized 3D images contain various features (including artifacts) characteristic for the time-of-flight protocol and exhibit remarkable correlation with the data acquired in a real MR scanner. The obtained results support the primary goal of the conducted research, i.e. establishing a reference technique for a quantified validation of MR angiography image processing algorithms. [ABSTRACT FROM AUTHOR]

MRI texture features are generally considered to be sensitive to variations in signal-to-noise ratio and spatial resolution, which represents an obstacle for the widespread clinical application of texture-based pattern discrimination with MRI. This study investigates the sensitivity of texture features of different categories (co-occurrence matrix, run-length matrix, absolute gradient, autoregressive model, and wavelet transform) to variations in the number of acquisitions (NAs), repetition time (TR), echo time (TE), and sampling bandwidth (SBW) at different spatial resolutions. Special emphasis was placed on the influence of MRI protocol heterogeneity and implications for the results of pattern discrimination. Experiments were performed using two polystyrene spheres and agar gel phantoms with different nodular patterns. T2-weighted multislice multiecho images were obtained using a 3.0 T scanner equipped with a microimaging gradient insert coil. Linear discriminant analysis and k nearest neighbor classification were used for texture-based pattern discrimination. Results show that texture features of all categories are increasingly sensitive to acquisition parameter variations with increasing spatial resolution. Nevertheless, as long as the spatial resolution is sufficiently high, variations in NA, TR, TE, and SBW have little effect on the results of pattern discrimination. Texture features derived from the co-occurrence matrix are superior to features of other categories because they enable discrimination of different patterns close to the resolution limits for the smallest structures of physical texture even for datasets that are heterogeneous with regard to different acquisition parameters, including spatial resolution. [ABSTRACT FROM AUTHOR]