105 results on '"McIntyre, C."'
Search Results
2. Vertical farms bear fruit.
- Author
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O'Sullivan, Cathryn A., McIntyre, C. Lynne, Dry, Ian B., Hani, Susan M., Hochman, Zvi, and Bonnett, Graham D.
- Abstract
Engineering perishable crops for use in indoor farms promises to expand the adoption of this high-yielding, efficient means of food production. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
3. The feasibility of a pragmatic distance‐based intervention to increase physical activity in lung cancer survivors.
- Author
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Peddle‐McIntyre, C. J., Baker, M. K., Lee, Y. C. G., Galvão, D. A., Cormie, P., Graham, V., and Newton, R. U.
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TREATMENT of lung tumors , *CANCER patient psychology , *CANCER pain , *INTERVIEWING , *HEALTH outcome assessment , *PATIENT compliance , *QUALITY of life , *SELF-evaluation , *TELEPHONES , *PATIENT participation , *ELIGIBILITY (Social aspects) , *HUMAN research subjects , *PHYSICAL activity - Abstract
The purpose of this study was to investigate the feasibility and preliminary efficacy of a pragmatic distance‐based intervention designed to increase physical activity (PA) participation in lung cancer survivors. Fourteen lung cancer survivors were recruited via invitation from the State Cancer Registry to join a 12‐week PA intervention of print materials paired with brief telephone follow‐up. Outcome measures of feasibility, PA participation and quality of life (QoL) were assessed at baseline, post‐intervention and follow‐up via telephone interview. Eligibility, recruitment and attrition rates were 16%, 58% and 29% respectively. No adverse events were reported; however, pain scores worsened following the intervention (median change −3.6, IQR −8.0, 0.0). Average intervention adherence was 91% with low median ratings of participation burden (i.e., all items 1/7) and high trial evaluation (i.e., all items 7/7). Post‐intervention, median change in self‐reported moderate and vigorous PA was 84 min (IQR −22, 188), and several domains of QoL improved. However, for both of these outcomes, improvements were not maintained at follow‐up. Our findings suggest that this pragmatic distance‐based intervention was safe, had good adherence rates, and indicate potential for improving short‐term PA and QoL in lung cancer survivors. Additional strategies are needed to improve other indicators of feasibility, particularly recruitment, retention and long‐term maintenance of improvements. Australian New Zealand Clinical Trials Registration: ACTRN12612000085875. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
4. 926 - Process Development and Manufacturing: GROWING A CELL THERAPY FACILITY TO SUPPORT SPONSORED CLINICAL TRIALS AND COMMERCIAL CELL THERAPY PRODUCTS.
- Author
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McIntyre, C., McLeod, M.G., Tutt, T., Petersen, A.G., Lepori-Bui, N., Patel, S., Monterola, G., Siddiqui, A., Villar, K., Tran, C., Bainter, C., Pham, T., Diaz, N., Lim, L., Dibian, Z., Wang, L., and Meyer, E.
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MANUFACTURING cells , *MANUFACTURING processes , *CELLULAR therapy , *CLINICAL trials - Published
- 2022
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5. Distinct KRAS Mutations are Enriched in Early-Stage Resected Pancreatic Ductal Adenocarcinoma.
- Author
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McIntyre, C., Grimont, A., Aveson, V., Seier, K., Walch, H., Pulvirenti, A., Gelfer, R., Gonen, M., Schultz, N., Park, W., O'Reilly, E., Jarnagin, W., and Chandwani, R.
- Subjects
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PANCREATIC duct , *RAS oncogenes , *ADENOCARCINOMA - Published
- 2022
- Full Text
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6. Characterisation of alleles of the sucrose phosphate synthase gene family in sugarcane and their association with sugar-related traits.
- Author
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McIntyre, C. L., Goode, M. L., Cordeiro, G., Bundock, P., Eliott, F., Henry, R. J., Casu, R. E., Bonnett, G. D., and Aitken, K. S.
- Abstract
Sucrose phosphate synthase (SPS) is a key enzyme in the production of sucrose. Five SPS gene families have been identified in monocotyledonous plants including sugarcane. Using SPS family-specific primers to four of the five families (we had previously characterised the fifth gene family), an approximately 400-nt region was amplified from the parents of a sugarcane mapping population, namely the cultivar Q165 and a S. officinarum line IJ76-514. Alignment of the sequences from both parents suggested from one to three genes per SPS gene family, with variable numbers of alleles per gene. Single-dose (SD) single-nucleotide polymorphisms (SNPs) were identified in at least one allele from each SPS gene family and mapped in Q165. For gene families SPS I–IV, SNPs from different alleles in each gene family mapped to different linkage groups within the same homology group (HG), suggesting a single gene per gene family, or multiple genes at a single locus. These map locations were syntenic with SPS gene family locations in sorghum. Two SNPs from different alleles in gene family SPS V were mapped to two different HGs, suggesting two genes in this family; one of the map locations was syntenic with the location of SPS V in sorghum. QTL analysis for sugar-related traits was undertaken with the SD and double-dose SNP markers. SNPs from SPS gene family IV were strongly associated with sugar-related traits, while SNPs from other gene families were associated with agronomic traits, such as stalk weight, diameter, and number. This study provides insight into the evolution of this important polyploid crop as well as highlights the importance of this gene family to sugar production in sugarcane. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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7. Genotypic variation in the accumulation of water soluble carbohydrates in wheat.
- Author
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McIntyre, C. Lynne, Seung, David, Casu, Rosanne E., Rebetzke, Gregory J., Shorter, Ray, and Xue, Gang Ping
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BIOCHEMISTRY , *CARBOHYDRATES , *WHEAT , *BIOLOGICAL variation , *GRAIN - Abstract
Water-soluble carbohydrates (WSC) stored in the stems and leaf sheaths of winter cereals provide an important source of assimilate for remobilisation during grain-filling. Consequently, WSC are a major contributor to wheat grain yield and grain size in all environments but especially where photosynthesis is compromised as occurs where water is limiting. Breeding programs targeting greater WSC should provide improved varieties with greater and more stable yields in stress environments. To facilitate selection for WSC, genetic and genomic approaches are being used to determine the genetic basis of - and define DNA probes for - marker-aided selection for this important drought-adaptive trait. Empirical studies have identified both WSC concentration and content to be under complex genetic control of many genes. Quantitative trait loci (QTL) for WSC have been identified in several wheat populations with individual QTL explaining small amounts of phenotypic variation, typically of less than 20%. Many of these QTL are common across multiple, genetically-unrelated wheat populations. Evaluation of gene expression in high and low WSC wheat progeny lines from a well characterised wheat population has identified significant differences in expression of genes from different gene categories. For example, high WSC progeny lines have higher levels of expression of genes involved in carbohydrate metabolism and lower levels of expression of genes involved in cell wall and amino acid metabolism than low WSC lines. Genetic mapping reveals several candidate genes co-locating with QTL for WSC. In addition, expression QTL (eQTL) for selected candidate genes co-locate with WSC QTL; co-location of the genes and eQTL with WSC QTL make these genes stronger candidate genes for the WSC trait. Water-soluble carbohydrates (WSC) stored in the stems are a major contributor to wheat grain yield and grain size especially under drought conditions. To help identify high WSC lines in wheat breeding programs, genetic markers for high WSC and the genes that control the amount of WSC are being identified. WSC is a complex trait, with many genes each of small effect, and high WSC is associated with higher levels of expression of genes involved in carbohydrate metabolism and lower levels of expression of genes involved in cell wall and amino acid metabolism than low WSC lines. [ABSTRACT FROM AUTHOR]
- Published
- 2012
- Full Text
- View/download PDF
8. Linked gene networks involved in nitrogen and carbon metabolism and levels of water-soluble carbohydrate accumulation in wheat stems.
- Author
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McIntyre, C., Casu, Rosanne, Rattey, Allan, Dreccer, M., Kam, Jason, Herwaarden, Anthony, Shorter, Ray, and Xue, Gang
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GENE expression , *WHEAT , *PLANT stems , *AMINO acid metabolism , *EFFECT of nitrogen on plants , *EFFECT of carbon on plants , *PLANT population genetics , *CARBOHYDRATES - Abstract
High levels of water-soluble carbohydrates (WSC) provide an important source of stored assimilate for grain filling in wheat. To better understand the interaction between carbohydrate metabolism and other metabolic processes associated with the WSC trait, a genome-wide expression analysis was performed using eight field-grown lines from the high and low phenotypic tails of a wheat population segregating for WSC and the Affymetrix wheat genome array. The 259 differentially expressed probe sets could be assigned to 26 functional category bins, as defined using MapMan software. There were major differences in the categories to which the differentially expressed probe sets were assigned; for example, probe sets upregulated in high relative to low WSC lines were assigned to category bins such as amino acid metabolism, protein degradation and transport and to be involved in starch synthesis-related processes (carbohydrate metabolism bin), whereas downregulated probe sets were assigned to cell wall-related bins, amino acid synthesis and stress and were involved in sucrose breakdown. Using the set of differentially expressed genes as input, chemical-protein network analyses demonstrated a linkage between starch and N metabolism via pyridoxal phosphate. Twelve C and N metabolism-related genes were selected for analysis of their expression response to varying N and water treatments in the field in the four high and four low WSC progeny lines; the two nitrogen/amino acid metabolism genes demonstrated a consistent negative association between their level of expression and level of WSC. Our results suggest that the assimilation of nitrogen into amino acids is an important factor that influences the levels of WSC in the stems of field-grown wheat. [ABSTRACT FROM AUTHOR]
- Published
- 2011
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9. TaNF-YB3 is involved in the regulation of photosynthesis genes in Triticum aestivum.
- Author
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Stephenson, Troy, McIntyre, C., Collet, Christopher, and Xue, Gang-Ping
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GENETIC regulation in plants , *PHOTOSYNTHESIS , *TRANSCRIPTION factors , *POLYMERASE chain reaction , *GENE expression in plants , *MESSENGER RNA , *PLANT genomes , *GENETIC code ,WHEAT genetics - Abstract
Nuclear factor Y (NF-Y) transcription factor is a heterotrimer comprised of three subunits: NF-YA, NF-YB and NF-YC. Each of the three subunits in plants is encoded by multiple genes with differential expression profiles, implying the functional specialisation of NF-Y subunit members in plants. In this study, we investigated the roles of NF-YB members in the light-mediated regulation of photosynthesis genes. We identified two NF-YB members from Triticum aestivum ( TaNF-YB3 & 7) which were markedly upregulated by light in the leaves and seedling shoots using quantitative RT-PCR. A genome-wide coexpression analysis of multiple Affymetrix Wheat Genome Array datasets revealed that TaNF-YB3-coexpressed transcripts were highly enriched with the Gene Ontology term photosynthesis. Transgenic wheat lines constitutively overexpressing TaNF-YB3 had a significant increase in the leaf chlorophyll content, photosynthesis rate and early growth rate. Quantitative RT-PCR analysis showed that the expression levels of a number of TaNF-YB3-coexpressed transcripts were elevated in the transgenic wheat lines. The mRNA level of TaGluTR encoding glutamyl-tRNA reductase, which catalyses the rate-limiting step of the chlorophyll biosynthesis pathway, was significantly increased in the leaves of the transgenic wheat. Significant increases in the expression level in the transgenic plant leaves were also observed for four photosynthetic apparatus genes encoding chlorophyll a/b-binding proteins (Lhca4 and Lhcb4) and photosystem I reaction centre subunits (subunit K and subunit N), as well as for a gene coding for chloroplast ATP synthase γ subunit. These results indicate that TaNF-YB3 is involved in the positive regulation of a number of photosynthesis genes in wheat. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
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10. Switching spatial dissipative solitons in a VCSEL with frequency selective feedback.
- Author
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Radwell, N., McIntyre, C., Scroggie, A. J., Oppo, G. L., Firth, W. J., and Ackemann, T.
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SOLITONS , *SPECTROGRAMS , *FREQUENCY spectra , *DYNAMICS , *COMPUTER simulation - Abstract
The process of switching on bistable spatial dissipative solitons in a VCSEL with frequency selective feedback is analyzed experimentally and theoretically. Two regimes of successful writing of spatial solitons with an external pulse are identified: for short durations of the writing beam pulse, the input amplitude has to increase, while for longer durations, the input amplitude can remain constant. Switch on spectrograms of the frequency spectrum show a transient dynamics over many modes of the external cavity with a drift of the central frequency from higher to lower frequency. Such a multi-mode regime is almost independent of the frequency of the writing beam. It is interpreted to be due to the existence of multiple unstable solitons with different frequencies which channel the transient dynamics. Good agreement between experimental results and numerical simulations in both the time and frequency domains is found. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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11. TaNF-YC11, one of the light-upregulated NF-YC members in Triticum aestivum, is co-regulated with photosynthesis-related genes.
- Author
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Stephenson, Troy J., McIntyre, C. Lynne, Collet, Christopher, and Gang-Ping Xue
- Subjects
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GENES , *WHEAT , *GENOMES , *PHOTOSYNTHESIS , *ENZYMES - Abstract
Nuclear factor Y (NF-Y) is a heterotrimeric transcription factor complex. Each of the NF-Y subunits (NF-YA, NF-YB and NF-YC) in plants is encoded by multiple genes. Quantitative RT-PCR analysis revealed that five wheat NF-YC members ( TaNF-YC5, 8, 9, 11 and 12) were upregulated by light in both the leaf and seedling shoot. Co-expression analysis of Affymetrix wheat genome array datasets revealed that transcript levels of a large number of genes were consistently correlated with those of the TaNF-YC11 and TaNF-YC8 genes in three to four separate Affymetrix array datasets. TaNF-YC11-correlated transcripts were significantly enriched with the Gene Ontology term photosynthesis. Sequence analysis in the promoters of TaNF-YC11-correlated genes revealed the presence of putative NF-Y complex binding sites (CCAAT motifs). Quantitative RT-PCR analysis of a subset of potential TaNF-YC11 target genes showed that ten out of the 13 genes were also light-upregulated in both the leaf and seedling shoot and had significantly correlated expression profiles with TaNF-YC11. The potential target genes for TaNF-YC11 include subunit members from all four thylakoid membrane-bound complexes required for the conversion of solar energy into chemical energy and rate-limiting enzymes in the Calvin cycle. These data indicate that TaNF-YC11 is potentially involved in regulation of photosynthesis-related genes. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
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12. Molecular detection of genomic regions associated with grain yield and yield-related components in an elite bread wheat cross evaluated under irrigated and rainfed conditions.
- Author
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McIntyre, C. Lynne, Mathews, Ky L., Rattey, Allan, Chapman, Scott C., Drenth, Janneke, Ghaderi, Mohammadghader, Reynolds, Matthew, and Shorter, Ray
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GRAIN harvesting , *WHEAT , *CULTIVARS , *HARVESTING - Abstract
Grain yield and grain weight of wheat are often decreased by water-limitation in the north-eastern cropping belt of Australia. Based on knowledge that CIMMYT lines are well-adapted in this region, a recombinant inbred line (RIL) population between two elite CIMMYT bread wheats (Seri M82 and Babax) was evaluated under water-limited environments. Fourteen productivity traits were evaluated in 192 progeny in up to eight trials. For three aggregations of the environments (all, high yield or low yield), multiple quantitative trait loci (QTL) were detected, each explaining <15% of variation. Co-location of multiple trait QTL was greatest on linkage groups 1B-a, 1D-b, 4A-a, 4D-a, 6A-a, 6B-a, 7A-a and an unassigned linkage group. Two putative QTL (LOD > 3) from Seri (6D-b and UA-d) increased grain yield and co-located with a suggestive (2 < LOD < 3) and a putative QTL for increased stem carbohydrate content (WSC), respectively; the latter QTL also co-located with a putative anthesis QTL for earlier flowering. Both QTL were detected only in high yield (>4t ha−1) environments. A third increased grain yield QTL (7A-a) from Babax co-located with QTL for increased grain number. Six putative QTL increased grain weight and co-located with QTL for harvest index, grains per spike and spike number. Three putative QTL for increased grains per spike co-located with strong QTL for earlier flowering, increased grain weight and fewer spikes. A group of progeny that exceeded the mean grain yield and grain weight of commercial checks had an increased frequency of QTL for high WSC, large grain size, increased harvest index and greater height, but fewer stems, when compared to low yielding (20% less), low grain weight progeny. These findings were consistent with agronomic analyses of the germplasm and demonstrate that there should be opportunities to independently manipulate grain number and grain size which is typically difficult due to strong negative correlations. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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13. Members of the Dof transcription factor family in Triticum aestivum are associated with light-mediated gene regulation.
- Author
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Shaw, Lindsay M., McIntyre, C. Lynne, Gresshoff, Peter M., and Gang-Ping Xue
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CARRIER proteins , *TRANSCRIPTION factors , *PHOTOSYNTHESIS , *CARBOHYDRATE metabolism , *NUCLEOTIDES , *PHYLOGENY , *GENOMES , *SUCROSE - Abstract
DNA binding with One Finger (Dof) protein is a plant-specific transcription factor implicated in the regulation of many important plant-specific processes, including photosynthesis and carbohydrate metabolism. This study has identified 31 Dof genes (TaDof) in bread wheat through extensive analysis of current nucleotide databases. Phylogenetic analysis suggests that the TaDof family can be divided into four clades. Expression analysis of the TaDof family across all major organs using quantitative RT-PCR and searches of the wheat genome array database revealed that the majority of TaDof members were predominately expressed in vegetative organs. A large number of TaDof members were down-regulated by drought and/or were responsive to the light and dark cycle. Further expression analysis revealed that light up-regulated TaDof members were highly correlated in expression with a number of genes that are involved in photosynthesis or sucrose transport. These data suggest that the TaDof family may have an important role in light-mediated gene regulation, including involvement in the photosynthetic process. [ABSTRACT FROM AUTHOR]
- Published
- 2009
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14. Molecular characterization of the waxy locus in sorghum.
- Author
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McIntyre, C. L., Drenth, J., Gonzalez, N., Henzell, R. G., and Jordan, D. R.
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SORGHUM , *GENETICS , *CELL nuclei , *GENOTYPE-environment interaction , *NUCLEOTIDE sequence , *PROTEIN conformation , *NUCLEIC acid analysis , *PROTEIN folding -- Computer simulation - Abstract
A comparison of approximately 4.5 kb of nucleotide sequence from the waxy locus (the granule-bound starch synthase I [GBSS I] locus) from a waxy line, BTxARG1, and a non-waxy line, QL39, revealed an extremely high level of sequence conservation. Among a total of 24 nucleotide differences and 9 indels, only 2 nucleotide changes resulted in altered amino acid residues. Protein folding prediction software suggested that one of the amino acid changes (Glu to His) may result in an altered protein structure, which may explain the apparently inactive GBSS I present in BTxARG1. This SNP was not found in the second waxy line, RTx2907, which does not produce GBSS I, and no other SNPs or indels were found in the approximately 4 kb of sequence obtained from RTx2907. Using one indel, the waxy locus was mapped to sorghum chromosome SBI-10, which is syntenous to maize chromosome 9; the waxy locus has been mapped to this maize chromosome. The distribution of indels in a diverse set of sorghum germplasm suggested that there are two broad types of non-waxy GBSS I alleles, each type comprising several alleles, and that the two waxy alleles in BTxARG1 and RTx2907 have evolved from one of the non-waxy allele types. The Glu/His polymorphism was found only in BTxARG1 and derived lines and has potential as a perfect marker for the BTxARG1 source of the waxy allele at the GBSS I locus. The indels correctly predicted the non-waxy phenotype in approximately 65% of diverse sorghum germplasm. The indels co-segregated perfectly with phenotype in two sorghum populations derived from crosses between a waxy and a non-waxy sorghum line, correctly identifying heterozygous lines. Thus, these indel markers or sequence-based SNP markers can be used to follow waxy alleles in sorghum breeding programs in selected pedigrees. [ABSTRACT FROM AUTHOR]
- Published
- 2008
15. Complementary use of peritoneal and hemodialysis: Therapeutic synergies in the treatment of end-stage renal failure patients.
- Author
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Kawanishi, H. and McIntyre, C.
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HEMODIALYSIS , *PERITONEAL dialysis , *PERMEABILITY , *ULTRAFILTRATION , *OSMOSIS - Abstract
The simultaneous use of peritoneal dialysis (PD) and hemodialysis therapy has been studied both in established PD patients who are experiencing problems with their dialysis treatment that might otherwise prompt a change in modality, and in patients new to dialysis. The application of combination therapy allows in incident patients a partial separation of solute clearance and ultrafiltration, optimizing each modality within that overall delivery. This article discusses the published experience of combination treatment, and considers the possible benefits of such an approach.Kidney International (2008) 73, S63–S67; doi:10.1038/sj.ki.5002603 [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
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16. Molecular Dissection of Variation in Carbohydrate Metabolism Related to Water-Soluble Carbohydrate Accumulation in Stems of Wheat.
- Author
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Gang-Ping Xue, McIntyre, C. Lynne, Jenkins, Colin L. D., Glassop, Donna, Van Herwaarden, Anthony F., and Shorter, Ray
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CARBOHYDRATE metabolism , *WHEAT , *GRAIN , *DISSECTION , *ENZYMES , *FRUCTANS - Abstract
Water-soluble carbohydrates (WSCs; composed of mamly fructans, sucrose [Suc], glucose [Gic], and fructose) deposited in wheat (Triticum aestivum) stems are important carbon sources for grain filling. Variation in stem WSC concentrations among wheat genotypes is one of the genetic factors influencing grain weight and yield under water-limited environments. Here, we describe the molecular dissection of carbohydrate metabolism in stems, at the WSC accumulation phase, of recombinant inbred Seri/Babax lines of wheat differing in stem WSC concentrations. Affymetrix GeneChip analysis of carbohydrate metabolic enzymes revealed that the mRNA levels of two fructan synthetic enzyme families (Suc:Suc 1-fructosyltransferase and Suc:fructan 6-fructosyltransferase) in the stem were positively correlated with stem WSC and fructan concentrations, whereas the mRNA levels of enzyme families involved in Suc hydrolysis (Suc synthase and soluble acid invertase) were inversely correlated with WSC concentrations. Differential regulation of the mRNA levels of these Suc hydrolytic enzymes in Seri/Babax lines resulted in genotypic differences in these enzyme activities. Down-regulation of Suc synthase and soluble acid. invertase in high WSC lines was accompanied by significant decreases in the mRNA levels of enzyme families related to sugar catabolic pathways (fructokinase and mitochondrion pyruvate dehydrogenase complex) and enzyme families involved in diverting UDP-Glc to cell wall synthesis (UDP-Glc 6-dehydrogenase, UDP-glucuronate decarboxylase, and cellulose synthase), resulting in a reduction in cell wall polysaccharide contents (mainly hemicellulose) in the stem of high WSC lines. These data suggest that differential carbon partitioning in the wheat stem is one mechanism that contributes to genotypic variation in WSC accumulation. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
17. An assessment of the genetic relationship between sweet and grain sorghums, within Sorghum bicolor ssp. bicolor (L.) Moench, using AFLP markers.
- Author
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Ritter, Kimberley B., McIntyre, C. Lyme, Godwin, Ian D., Jordan, David R., and Chapman, Scott C.
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SORGO , *SORGHUM , *CROP yields , *GENETIC polymorphisms , *PLANT breeding , *PLANTS - Abstract
Compared to grain sorghums, sweet sorghums typically have lower grain yield and thick, tall stalks which accumulate high levels of sugar (sucrose, fructose and glucose). Unlike commercial grain sorghum ( S. bicolor ssp. bicolor) cultivars, which are usually F1 hybrids, commercial sweet sorghums were selected as wild accessions or have undergone limited plant breeding. Although all sweet sorghums are classified within S. bicolor ssp. bicolor, their genetic relationship with grain sorghums is yet to be investigated. Ninety-five genotypes, including 31 sweet sorghums and 64 grain sorghums, representing all five races within the subspecies bicolor, were screened with 277 polymorphic amplified fragment length polymorphism (AFLP) markers. Cluster analysis separated older sweet sorghum accessions (collected in mid 1800s) from those developed and released during the early to mid 1900s. These groups were emphasised in a principle component analysis of the results such that sweet sorghum lines were largely distinguished from the others, particularly by a group of markers located on sorghum chromosomes SBI-08 and SBI-10. Other studies have shown that QTL and ESTs for sugar-related traits, as well as for height and anthesis, map to SBI-10. Although the clusters obtained did not group clearly on the basis of racial classification, the sweet sorghum lines often cluster with grain sorghums of similar racial origin thus suggesting that sweet sorghum is of polyphyletic origin within S. bicolor ssp. bicolor [ABSTRACT FROM AUTHOR]
- Published
- 2007
- Full Text
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18. Update on peritoneal dialysis solutions.
- Author
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McIntyre, C. W.
- Subjects
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PERITONEAL dialysis , *SOLUTIONS (Pharmacy) , *KIDNEY disease treatments , *HEALTH outcome assessment , *NEPHROLOGY , *FLUIDS - Abstract
Since the widespread introduction of peritoneal dialysis (PD) into the standard care of patients with chronic kidney disease there has been a shift from the initial focus on technique survival to refinement of the therapy to enhance biocompatibility and improve both the local peritoneal and systemic consequences of PD. One of the most significant contributions to these advances has been the development of novel PD solutions. The use of new manufacturing techniques, buffer presentation, and new osmotic alternatives to glucose have allowed potentially improved peritoneal survival (in terms of structure and function) and improved subjective patient experience. Additional benefits have also included, enhanced management of salt and water removal, supported nutritional status and improvement in the systemic metabolic derangements associated with conventional PD treatment, based on glucose-containing lactate-buffered solutions. The selection of suitable targets for modulation of therapy continues to be hampered by our continued relative ignorance of the local and particularly systemic effects of PD compounded by the dearth of quality, outcome-based studies. The aim of this review is to summarize the characteristics of the next generation of PD fluids currently available, and then to evaluate their possible place in treatment by considering the difference in their effects in a series of structural and functional areas potentially relevant to improving patient outcomes.Kidney International (2007) 71, 486–490. doi:10.1038/sj.ki.5002109; published online 14 February 2007 [ABSTRACT FROM AUTHOR]
- Published
- 2007
- Full Text
- View/download PDF
19. Update on peritoneal dialysis solutions.
- Author
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McIntyre, C W
- Abstract
Since the widespread introduction of peritoneal dialysis (PD) into the standard care of patients with chronic kidney disease there has been a shift from the initial focus on technique survival to refinement of the therapy to enhance biocompatibility and improve both the local peritoneal and systemic consequences of PD. One of the most significant contributions to these advances has been the development of novel PD solutions. The use of new manufacturing techniques, buffer presentation, and new osmotic alternatives to glucose have allowed potentially improved peritoneal survival (in terms of structure and function) and improved subjective patient experience. Additional benefits have also included, enhanced management of salt and water removal, supported nutritional status and improvement in the systemic metabolic derangements associated with conventional PD treatment, based on glucose-containing lactate-buffered solutions. The selection of suitable targets for modulation of therapy continues to be hampered by our continued relative ignorance of the local and particularly systemic effects of PD compounded by the dearth of quality, outcome-based studies. The aim of this review is to summarize the characteristics of the next generation of PD fluids currently available, and then to evaluate their possible place in treatment by considering the difference in their effects in a series of structural and functional areas potentially relevant to improving patient outcomes. [ABSTRACT FROM AUTHOR]
- Published
- 2007
- Full Text
- View/download PDF
20. Identification of common root-lesion nematode (Pratylenchus thornei Sher et Allen) loci in bread wheat.
- Author
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Toktay, Halil, McIntyre, C. Lynne, Nicol, Julie M., Ozkan, Hakan, and Elekcioglu, Halil I.
- Subjects
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NEMATODES , *CHROMOSOMES , *WORMS , *CELL nuclei , *ORGANELLES - Abstract
Plant parasitic nematodes are a major biotic cause of wheat-yield loss in temperate wheat-growing regions. A major strategy to develop resistance to root-lesion nematodes (RLNs) in wheat is to assess and then exploit their natural genetic variation. This study examines RLN (Pratylenchus thornei) resistance in 1 Middle Eastern landrace (AUS4930 7.2) and 1 synthetic hexaploid wheat, CROC_1/AE.SQUARROSA (224)//OPATA (CROC), using F2 and F9 populations generated by crossing AUS4930 7.2 and CROC with the susceptible cultivar Pastor, and inoculating these crosses with P. thornei in greenhouse trials. Wheat microsatellite markers linked to previously identified quantitative trait loci (QTLs) for resistance to P. thornei and P. neglectus were used to screen both populations. In the AUS4930 7.2 × Pastor population, resistance loci on chromosomes 1B, 2B, and 6D were detected. Similarly, in the CROC × Pastor population, 2 resistance loci, located on chromosomes 1B and 3B, were identified. Interestingly, a resistance locus located on chromosome 6D was not detected. More detailed mapping is required in these 2 populations, developed using new RLN resistance sources, to determine whether the QTLs identified on these chromosomes are the same, are allelic, or are linked to different resistance loci from those previously identified, and to determine whether these 2 sources contain other novel resistance loci. [ABSTRACT FROM AUTHOR]
- Published
- 2006
- Full Text
- View/download PDF
21. The identification and characterisation of alleles of sucrose phosphate synthase gene family III in sugarcane.
- Author
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McIntyre, C. L., Jackson, M., Cordeiro, G. M., Amouyal, O., Hermann, S., Aitken, K. S., Eliott, F., Henry, R. J., Casu, R. E., and Bonnett, G. D.
- Subjects
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SUGARCANE , *GENES , *SUCROSE , *NUCLEOTIDES , *GENOMES , *GENETIC polymorphisms - Abstract
Little is known about the extent of allelic diversity of genes in the complex polyploid, sugarcane. Using sucrose phosphate synthase (SPS) Gene (SPS) Family III as an example, we have amplified and sequenced a 400 nt region from this gene from two sugarcane lines that are parents of a mapping population. Ten single nucleotide polymorphisms (SNPs) were identified within the 400 nt region of which seven were present in both lines. In the elite commercial cultivar Q165A, 10 sequence haplotypes were identified, with four haplotypes recovered at 9% or greater frequency. Based on SNP presence, two clusters of haplotypes were observed. In IJ76-514, a Saccharum officinarum accession, 8 haplotypes were identified with 4 haplotypes recovered at 13% or greater frequency. Again, two clusters of haplotypes were observed. The results suggest that there may be two SPS Gene Family III genes per genome in sugarcane, each with different numbers of different alleles. This suggestion is supported by sequencing results in an elite parental sorghum line, 403463-2-1, in which 4 haplotypes, corresponding to two broad types, were also identified. Primers were designed to the sugarcane SNPs and screened over bulked DNA from high and low Sucrose-containing progeny from a cross between Q165A and IJ76-514. The SNP frequency did not vary in the two bulked DNA samples, suggesting that these SNPs from this SPS gene family are not associated with variation in sucrose content. Using an ecotilling approach, two of the SPS Gene Family III haplotypes were mapped to two different linkage groups in homology group 1 in Q165A. Both haplotypes mapped near QTLs for increased sucrose content but were not themselves associated with any sugar-related trait. [ABSTRACT FROM AUTHOR]
- Published
- 2006
- Full Text
- View/download PDF
22. Administration of Epinephrine for Life-Threatening Allergic Reactions in School Settings.
- Author
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McIntyre, C. Lynne, Sheetz, Anne H., Carroll, Constance R., and Young, Michael C.
- Subjects
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ADRENALINE , *ALLERGIES , *ALLERGY in children , *HEALTH - Abstract
Objective. Although the potential for life-threatening allergic reactions in children is a significant health concern for schools, there is little information about the circumstances surrounding anaphylactic events that occur in schools. The objectives of this study were to determine the incidence of anaphylaxis in schools, describe the circumstances around anaphylactic events, assess practices that are used to manage students with life-threatening allergies, and identify opportunities for improvement. Methods. A total of 109 school districts in Massachusetts completed an Epinephrine Administration Form whenever epinephrine was administered at school. Data were collected from September 2001 to August 2003. Results. Forty-eight school districts reported a total of 115 administrations of epinephrine during the 2-year reporting period. In 24% of the cases, the individual was not known to have a life-threatening allergy. Almost one third (31%) of the students who received epinephrine had allergies to multiple substances, and one quarter (25%) had an allergy to peanuts or tree nuts only. Twenty-two (19%) cases occurred outside the school building on the playground, traveling to and from school, or on field trips. The administration of epinephrine most often occurred in the health office by a registered nurse. The average time from onset of symptoms to administration of epinephrine was 10 minutes. In 92% of the cases, the student was transported to a medical facility via the emergency medical system. Conclusions. Anaphylactic reactions in schools, although not frequent, are not uncommon events. A systematic review of anaphylactic events that required epinephrine administration identified opportunities for improvement in the treatment of students with life-threatening allergies. [ABSTRACT FROM AUTHOR]
- Published
- 2005
- Full Text
- View/download PDF
23. Identification and Validation of Molecular Markers Associated with Pachymetra Root Rot and Brown Rust Resistance in Sugarcane Using Map- and Association-based Approaches.
- Author
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McIntyre, C. L., Whan, V. A., Croft, B., Magarey, R., and Smith, G. R.
- Subjects
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SUGARCANE diseases & pests , *ROOT rots , *ROOT diseases , *DISEASE resistance of plants , *MICROSATELLITE repeats , *PLANT genetics - Abstract
Marker-assisted selection for traits that are difficult to screen for, such as resistance to many sugarcane diseases, has the potential to facilitate the development of improved cultivars in sugarcane. Pachymetra root rot (PRR) and brown rust resistance ratings were obtained over two years for 192 I1 progeny (progeny produced by two heterozygous, non-inbred parental lines) of a sugarcane ( Saccharum spp. hybrid) cross between two elite sugarcane clones, Q117 and 74C42. Approximately 1000 single-dose markers, including microsatellite (SSR), amplified fragment length polymorphism (AFLP) and restriction fragment length polymorphism (RFLP) markers, were scored across the population and maps containing approximately 400 markers were constructed for each parent. At p ≤ 0.01, two genomic regions, one from the female Q117 map and a different region from the 74C42 male map, plus an unlinked bi-parental simplex marker (single-dose marker present in both parents) were identified as associated with PRR over both years of data collection. These regions explained between 6 and 16% of the phenotypic variation. An additional region was identified in the female map as associated with PRR at p ≤ 0.01 in one year and p ≤ 0.05 in the second year. This region explained between 4 and 8% of the phenotypic variation. For brown rust, two genomic regions, one from the female map and one from the male map, plus an unlinked marker from both maps, were identified as associated with brown rust resistance at p ≤ 0.01 over two years of phenotypic data. Each region explained between 7 and 18% of the phenotypic variation. Several additional regions were identified in both maps as associated with brown rust at p ≤ 0.01 in one year and p ≤ 0.05 in the second year. These regions also explained between 5 and 11% of the phenotypic variation. To validate these markers and determine whether they would be useful in alternative germplasm, markers from each genomic region associated with PRR or brown rust were screened across a set of 154 elite sugarcane clones; PRR and brown rust ratings were available for 131 and 72 of the clones, respectively. For PRR, three of the 6 markers tested remained significantly associated ( p ≤ 0.01) with resistance ratings in the elite clone set. For brown rust, only one of the seven markers tested remained significantly associated ( p ≤ 0.01) with resistance in the elite clone set, with one other marker associated at p ≤ 0.05. These results suggest that these markers could be broadly effective in selecting for PRR and/or brown rust resistance in sugarcane breeding programs. [ABSTRACT FROM AUTHOR]
- Published
- 2005
- Full Text
- View/download PDF
24. Resistance gene analogues in sugarcane and sorghum and their association with quantitative trait loci for rust resistance.
- Author
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McIntyre, C. L., Casu, R. E., Drenth, J., Knight, D., Whan, V. A., Croft, B. J., Jordan, D. R., Manners, J. M., and Gustafson, J. P.
- Subjects
- *
SUGARCANE , *SORGHUM , *DISEASE resistance of plants , *PLANT defenses , *PLANT ecology - Abstract
Fifty-four different sugarcane resistance gene analogue (RGA) sequences were isolated, characterized, and used to identify molecular markers linked to major disease-resistance loci in sugarcane. Ten RGAs were identified from a sugarcane stem expressed sequence tag (EST) library; the remaining 44 were isolated from sugarcane stem, leaf, and root tissue using primers designed to conserved RGA motifs. The map location of 31 of the RGAs was determined in sugarcane and compared with the location of quantitative trait loci (QTL) for brown rust resistance. After 2 years of phenotyping, 3 RGAs were shown to generate markers that were significantly associated with resistance to this disease. To assist in the understanding of the complex genetic structure of sugarcane, 17 of the 31 RGAs were also mapped in sorghum. Comparative mapping between sugarcane and sorghum revealed syntenic localization of several RGA clusters. The 3 brown rust associated RGAs were shown to map to the same linkage group (LG) in sorghum with 2 mapping to one region and the third to a region previously shown to contain a major rust-resistance QTL in sorghum. These results illustrate the value of using RGAs for the identification of markers linked to disease resistance loci and the value of simultaneous mapping in sugarcane and sorghum. [ABSTRACT FROM AUTHOR]
- Published
- 2005
- Full Text
- View/download PDF
25. Composition and origin of fuel from the hut of explorer Robert Falcon Scott, Cape Evans, Antarctica
- Author
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Volk, H., McIntyre, C., Batts, B.D., and George, S.C.
- Subjects
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GEOCHEMISTRY , *FUEL , *PETROLEUM products - Abstract
Abstract: Geochemical analyses of the fuel used for the motor driven sledges used by the explorer Robert Falcon Scott for his 1911/1912 quest to the South Pole indicate that it is a straight run gasoline. The presence of bicadinanes, oleanane and other oleanoid angiosperm markers indicate that the feedstock oil was likely to have been sourced from terrestrial source rocks of Tertiary age in the South East Asian region. The overall chemical composition of the fuel in its present state indicates that it may have been too heavy for usage in polar regions. [Copyright &y& Elsevier]
- Published
- 2005
- Full Text
- View/download PDF
26. Homologues of the maize rust resistance gene Rp1-D are genetically associated with a major rust resistance QTL in sorghum.
- Author
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McIntyre, C. L., Hermann, S. M., Casu, R. E., Knight, D., Drenth, J., Tao, Y., Brumbley, S. M., Godwin, I. D., Williams, S., Smith, G. R., and Manners, J. M.
- Subjects
- *
SORGHUM , *SUGARCANE , *GENES , *DNA - Abstract
As part of a comparative mapping study between sugarcane and sorghum, a sugarcane cDNA clone with homology to the maize Rp1-D rust resistance gene was mapped in sorghum. The cDNA probe hybridised to multiple loci, including one on sorghum linkage group (LG) E in a region where a major rust resistance QTL had been previously mapped. Partial sorghum Rp1-D homologues were isolated from genomic DNA of rust-resistant and -susceptible progeny selected from a sorghum mapping population. Sequencing of the Rp1-D homologues revealed five discrete sequence classes: three from resistant progeny and two from susceptible progeny. PCR primers specific to each sequence class were used to amplify products from the progeny and confirmed that the five sequence classes mapped to the same locus on LG E. Cluster analysis of these sorghum sequences and available sugarcane, maize and sorghum Rp1-D homologue sequences showed that the maize Rp1-D sequence and the partial sugarcane Rp1-D homologue were clustered with one of the sorghum resistant progeny sequence classes, while previously published sorghum Rp1-D homologue sequences clustered with the susceptible progeny sequence classes. Full-length sequence information was obtained for one member of a resistant progeny sequence class (Rp1-SO) and compared with the maize Rp1-D sequence and a previously identified sorghum Rp1 homologue (Rph1-2). There was considerable similarity between the two sorghum sequences and less similarity between the sorghum and maize sequences. These results suggest a conservation of function and gene sequence homology at the Rp1 loci of maize and sorghum and provide a basis for convenient PCR-based screening tools for putative rust resistance alleles in sorghum. [ABSTRACT FROM AUTHOR]
- Published
- 2004
- Full Text
- View/download PDF
27. Identification of a major locus conferring resistance to powdery mildew (Erysiphepolygoni DC) in mungbean (Vignaradiata L. Wilczek) by QTL analysis.
- Author
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McIntyre, C L, Humphry, M E, Magner, T, Aitken, E A.B, and Liu, C J
- Subjects
- *
MUNG bean , *POWDERY mildew diseases , *BEANS , *MILDEW , *FUNGI - Abstract
A major locus conferring resistance to the causal organism of powdery mildew, Erysiphe polygoni DC, in mungbean (Vigna radiata L. Wilczek) was identified using QTL analysis with a population of 147 recombinant inbred individuals. The population was derived from a cross between 'Berken', a highly susceptible variety, and ATF 3640, a highly resistant line. To test for response to powdery mildew, F7 and F8 lines were inoculated by dispersing decaying mungbean leaves with residual conidia of E. polygoni amongst the young plants to create an artificial epidemic and assayed in a glasshouse facility. To generate a linkage map, 322 RFLP clones were tested against the two parents and 51 of these were selected to screen the mapping population. The 51 probes generated 52 mapped loci, which were used to construct a linkage map spanning 350 cM of the mungbean genome over 10 linkage groups. Using these markers, a single locus was identified that explained up to a maximum of 86% of the total variation in the resistance response to the pathogen. [ABSTRACT FROM AUTHOR]
- Published
- 2003
28. Gas jet as a waveguide for air-coupled ultrasound
- Author
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Choi, D.W., McIntyre, C., Hutchins, D.A., and Billson, D.R.
- Subjects
- *
GASES , *ULTRASONIC transducers - Abstract
The directional characteristics of an ultrasonic signal have been studied during propagation within an axial gas jet. The effects of nozzle shape, nozzle diameter, and variations in jet velocity, temperature and gas composition have been investigated. At high flow velocities of an air jet, divergence of the ultrasonic beam was observed. This was attributed to the effects of refraction, caused by increased acoustic velocities in the direction of the flow. An effective waveguide was also demonstrated by cooling the air jet to below ambient temperatures, so that the acoustic velocity in the air jet was lower than that in the surrounding atmosphere. This could also be achieved by using carbon dioxide mixed with air, whereas the use of helium led to increased divergence. The result is likely to be of use in air-coupled ultrasonic materials inspection. [Copyright &y& Elsevier]
- Published
- 2002
- Full Text
- View/download PDF
29. Back to the future: It does not only happen in Hollywood.
- Author
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Filho, J. C. Divino, McIntyre, C., Povlsen, J. V., and Paniagua, R.
- Subjects
- *
DIALYSIS (Chemistry) , *OSMOSIS - Abstract
The article discusses various reports published within the issue, including on the description of the peritoneal dialysis technique, and another on new osmotic agents.
- Published
- 2008
- Full Text
- View/download PDF
30. Hybrid delivery of cluster-set resistance training for individuals previously treated for lung cancer: the results of a single-arm feasibility trial.
- Author
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Fairman, C. M., Owens, O. L., Kendall, K. L., Steele, J., Schumpp, A. R., Latella, C., Jones, M. T., Marcotte, L., Dawson, J. M., Peddle-McIntyre, C. M. J., and McDonnell, K. K.
- Subjects
- *
RESISTANCE training , *LUNG cancer , *PHYSICAL activity , *NON-small-cell lung carcinoma , *FATIGUE (Physiology) - Abstract
Background: Individuals with non-small cell lung cancer (NSCLC) are burdened by long-lasting symptoms (e.g., dyspnea and fatigue) post-treatment. These symptoms often reduce physical activity levels and increase the risk of functional decline. Though we have previously proposed cluster-set resistance training to mitigate symptom burden in lung cancer, there is currently no data on the feasibility or acceptability of this mode of exercise in cancer. Therefore, the purpose of this study was to investigate the feasibility and acceptability of a hybrid-delivery home-based cluster-set resistance training program in individuals with NSCLC stages I–III (i.e., early stage). Methods: This study aimed to recruit individuals with NSCLC stages I–III post-treatment to participate in 8 weeks of home-based resistance training, 3 days per week. The program included supervised sessions in the participants' homes and virtual supervision via videoconferencing. The primary outcome measure of feasibility was evaluated through recruitment, retention, and intervention fidelity (i.e., proportion of exercise completed, relative to what was prescribed). Intervention acceptability (i.e., ease and quality of virtual delivery, level of difficulty, and home-based approach) was assessed using a 4-point Likert-type scale from "strongly disagree" to "strongly agree". Results: Fourteen participants were recruited over a 6-month period, with 11 completing the intervention (2 withdrew due to unrelated illness, 1 withdrew due to requiring active treatment), yielding a retention rate of 79%. Characteristics of the participants who completed the intervention (n = 11) were as follows: mean age: 71 ± 10 years, mean BMI: 29.1 ± 6.5, and average time since diagnosis was 62 ± 51 months. Of completers, 27% were male, and 36% were Black; 10 were stage I (91%), and one was stage II (9%). Mean session attendance was 86.4 ± 9.5%. Mean intervention fidelity was 83.1 ± 13.1%. With regard to acceptability, > 90% of participants positively rated all aspects of the intervention delivery. No adverse events related to exercise were recorded. Conclusions: The hybrid delivery of a home-based resistance exercise program for individuals previously treated for early-stage NSCLC was found to be safe and feasible. Adaptations to the program for future interventions are required, particularly surrounding resistance exercise programming, and intervention delivery with home visits. Trial registration: ClinicalTrials.gov: NCT05014035. Registered January 20, 2021. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
31. Laparoscopic living donor right hepatectomy.
- Author
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McIntyre, C., Griesemer, A., Emond, J., and Samstein, B.
- Subjects
- *
LAPAROSCOPIC surgery , *HEPATECTOMY , *LIVER transplantation - Published
- 2017
- Full Text
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32. Characterisation of riverine dissolved organic matter using a complementary suite of chromatographic and mass spectrometric methods.
- Author
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Lloyd, C. E. M., Mena-Rivera, L. A., Pemberton, J. A., Johnes, P. J., Jones, D. L., Yates, C. A., Brailsford, F. L., Glanville, H. C., McIntyre, C. A., and Evershed, R. P.
- Subjects
- *
DISSOLVED organic matter , *TECHNOLOGICAL innovations , *NUTRIENT cycles - Abstract
Dissolved organic matter (DOM) plays a fundamental role in nutrient cycling dynamics in riverine systems. Recent research has confirmed that the concentration of riverine DOM is not the only factor regulating its functional significance; the need to define the chemical composition of DOM is a priority. Past studies of riverine DOM rested on bulk quantification, however technological advancements have meant there has been a shift towards analytical methods which allow the characterisation of DOM either at compound class or more recently molecular level. However, it is important to consider that all analytical methods only consider a defined analytical window. Thus, herein, we explore the use of a hierarchy of methods which can be used in combination for the investigation of a wide range of DOM chemistries. By using these methods to investigate the DOM composition of a range of streams draining catchments of contrasting environmental character, a wide range of compounds were identified across a range of polarities and molecular weight, thereby extending the analytical window. Through the elucidation of the DOM character in stream samples, information can be collected about likely the sources of DOM. The identification of individual key compounds within the DOM pool is a key step in the design of robust and informative bioassay experiments, used to understand in-stream ecosystem responses. This is critical if we are to assess the role of DOM as a bioavailable nutrient resource and/or ecotoxicological factor in freshwater. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
33. Overexpression of a predominantly root-expressed NAC transcription factor in wheat roots enhances root length, biomass and drought tolerance.
- Author
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Chen, Dandan, Chai, Shoucheng, McIntyre, C. Lynne, and Xue, Gang-Ping
- Subjects
- *
GENETIC overexpression , *TRANSCRIPTION factors , *WHEAT root rots , *PLANT biomass , *DROUGHT tolerance - Abstract
Key message: TaRNAC1 is a constitutively and predominantly root-expressed NAC transcription factor. TaRNAC1 overexpression in wheat roots confers increased root length, biomass and drought tolerance and improved grain yield under water limitation. Abstract: A large and deep root system is an important trait for yield sustainability of dryland cereal crops in drought-prone environments. This study investigated the role of a predominantly root-expressed NAC transcription factor from wheat ( TaRNAC1) in the root growth. Expression analysis showed that TaRNAC1 was a constitutively expressed gene with high level expression in the roots and was not drought-upregulated. Overexpression of TaRNAC1 in wheat using a predominantly root-expressed promoter resulted in increased root length and biomass observed at the early growth stage and a marked increase in the maturity root biomass with dry root weight of > 70% higher than that of the wild type plants. Analysis of some root growth-related genes revealed that the expression level of GA3-ox2, which encodes GIBBERELLIN 3-OXIDASE catalysing the conversion of inactive gibberellin (GA) to active GA, was elevated in the roots of transgenic wheat. TaRNAC1 overexpressing transgenic wheat showed more dehydration tolerance under polyethylene glycol (PEG) treatment and produced more aboveground biomass and grain under water-limited conditions than the wild type plants. These data suggest that TaRNAC1 may play a role in root growth and be used as a molecular tool for potential enlargement of root system in wheat. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
34. 159 Frequency and pathogenicity of individual rhinovirus species during adult exacerbations.
- Author
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Whitaker, P., McIntyre, C., Shah, A., Hale, T., Etherington, C., Simmonds, P., and Peckham, D.
- Published
- 2013
- Full Text
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35. Erratum to: Switching spatial dissipative solitons in a VCSEL with frequency selective feedback.
- Author
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Radwell, N., McIntyre, C., Scroggie, A. J., Oppo, G. L., Firth, W. J., and Ackemann, T.
- Subjects
- *
SOLITONS - Abstract
A correction to the article "Switching spatial dissipative solitons in a VCSEL with frequency selective feedback," is presented.
- Published
- 2010
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36. Back to the future: It does not only happen in Hollywood.
- Author
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Divino Filho, J.C., McIntyre, C., Povlsen, J.V., and Paniagua, R.
- Subjects
- *
PERITONEAL dialysis , *TREATMENT of chronic kidney failure , *CHRONIC kidney failure , *PATIENTS - Abstract
An introduction is presented in which the editor discusses the peritoneal dialysis (PD) therapy for patients with acute kidney injury (AKI) and chronic kidney disease (CKD).
- Published
- 2008
- Full Text
- View/download PDF
37. Complementary use of peritoneal and hemodialysis: Therapeutic synergies in the treatment of end-stage renal failure patients.
- Author
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Kawanishi, H. and McIntyre, C.
- Subjects
- *
TREATMENT of chronic kidney failure , *PERITONEAL dialysis , *HEMODIALYSIS patients , *HEALTH outcome assessment , *TREATMENT effectiveness , *ULTRAFILTRATION - Abstract
The simultaneous use of peritoneal dialysis (PD) and hemodialysis therapy has been studied both in established PD patients who are experiencing problems with their dialysis treatment that might otherwise prompt a change in modality, and in patients new to dialysis. The application of combination therapy allows in incident patients a partial separation of solute clearance and ultrafiltration, optimizing each modality within that overall delivery. This article discusses the published experience of combination treatment, and considers the possible benefits of such an approach. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
38. Back to the future: it does not only happen in Hollywood.
- Author
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Filho JCD, McIntyre C, Povlsen JV, and Paniagua R
- Abstract
Residual renal function (RRF) is of paramount importance in patients with end-stage renal disease, with benefits that go beyond contributing to achievement of adequacy targets. Several studies have found that RRF rather than overall adequacy (as estimated from total small solute removal rates) is an essential marker of patient and, to a lesser extent, technique survival during chronic peritoneal dialysis (PD) therapy. In addition, RRF is associated with a reduction in blood pressure and left ventricular hypertrophy, increased sodium removal and improved fluid status, lower serum beta(2)-microglobulin, phosphate and uric acid levels, higher serum hemoglobin and bicarbonate levels, better nutritional status, a more favorable lipid profile, decreased circulating inflammatory markers, and lower risk for peritonitis in PD. As compared with conventional hemodialysis, PD is associated with a slower decrease in RRF. This highlights the usefulness of strategies oriented to preserve both RRF and the long-term viability of the peritoneal membrane. Several factors contributing to the loss of RRF have been identified and should be avoided. Renoprotective drugs and new glucose-sparing, more biocompatible PD regimes may prove useful tools to preserve RRF and peritoneal membrane function in the near future. [ABSTRACT FROM AUTHOR]
- Published
- 2008
39. Administration of Epinephrine for Life-Threatening Allergic Reactions in School Settings.
- Author
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McIntyre, C. Lynne and Sheetz, Anne H.
- Subjects
- *
LETTERS to the editor , *ADRENALINE - Abstract
A response by C. Lynne McIntyre and Anne H. Sheetz to a letter to the editor about their article "Administration of Epinephrine for Life-Threatening Allergic Reactions in School Settings" in a 2005 issue is presented.
- Published
- 2006
- Full Text
- View/download PDF
40. DATA-DRIVEN STRATEGY FOR OPTIMIZING CRYOPRESERVED PRODUCT INVENTORY MANAGEMENT.
- Author
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Patel, R., Pham, T., Love, C., Beltran, J., Abello, G., Lim, L., Musa, E., Nderitu, A. Gichane, Pon, R., Bove, R., Ho, J., Monterola, G., Tadiar, H., Reddy, P., Phomsouvanh, B., Lepori-Bui, N., Diaz, N., McLeod, M., Lowsky, R., and McIntyre, C.
- Subjects
- *
INVENTORY control , *INVENTORY management systems , *PRODUCT management , *BOTTLENECKS (Manufacturing) , *PERSONNEL management , *DESTOCKING - Abstract
- This project addresses the challenge of managing excess product inventory to optimize resource utilization, reduce costs of holding excess products, and enhance departmental sustainability. - By leveraging data from electronic inventory management system, product usage trends, and product lifecycle assessments, the project aims to identify and categorize products for discard, thereby free up valuable storage space. - Empower employees with Project Management training, equipping them with the skills to lead and implement improvement initiatives effectively. - Create a cross-functional task force with representatives from Operations, Quality, and management to develop efficient disposal processes. - Streamline workflow, reduce time wastage, provide personnel with training, and allocate dedicated teams to critical steps to alleviate potential bottlenecks. - Maintain 5S workstations for easy identification of areas needing attention and increase efficiency. - Develop a Smartsheet Dashboard to monitor progress, enhance project visibility, facilitate effective communication of resources requirements. - Utilize data from electronic inventory management system and patient database to create S.M.A.R.T. goals. - We found a viable strategy for immediate inventory reduction while emphasizing its potential impact for a more sustainable inventory management system to address increasing number of cryopreserved patient products. 1) Effectively communicated to management and physicians our need for space and consider requesting less backup doses. 2) Established and maintained a workflow, implementing a routine for staff to efficiently manage inventory space, with acknowledgment for all team members involved in the project. 3) With scalability in consideration, we expanded available inventory space from 85% to 80% capacity, achieving this milestone within 8 months. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
41. Study protocol: investigating the feasibility of a hybrid delivery of home-based cluster set resistance training for individuals previously treated for lung cancer.
- Author
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Fairman, C. M., Owens, O. L., Kendall, K. L., Steele, J., Latella, C., Jones, M. T., Marcotte, L., Peddle-McIntyre, C. M. J., and McDonnell, K. K.
- Subjects
- *
RESISTANCE training , *LUNG cancer , *NON-small-cell lung carcinoma , *EXERCISE tolerance , *CHILDBIRTH at home , *BODY composition , *RESEARCH protocols - Abstract
Background: Symptom burden remains a critical concern for individuals with non-small cell lung cancer (NSCLC) following the completion of treatment. The most common symptom clusters, dyspnea (shortness of breath) and fatigue, can contribute to physical decline, reductions in quality of life, and a higher risk of comorbidities and mortality. Dyspnea is a primary limiter of exercise capacity in individuals with lung cancer, resulting in exercise avoidance and an accelerated physical decline. As such, designing resistance training with cluster sets to mitigate symptoms of dyspnea and fatigue may result in improved exercise tolerance. Thus, maintaining the exercise stimulus via cluster sets, combined with improved tolerance of the exercise, could result in the maintenance of physical function and quality of life. The purpose of this study is to investigate the feasibility and preliminary efficacy of a hybrid-delivery home-based cluster-set resistance training program in individuals with NSCLC. Methods: Individuals with NSCLC (n = 15), within 12 months of completion of treatment, will be recruited to participate in this single-arm feasibility trial. Participants will complete 8 weeks of home-based resistance training designed to minimize dyspnea and fatigue. The hybrid delivery of the program will include supervised sessions in the participants' home and virtual supervision via video conferencing. The primary outcome of feasibility will be quantified by recruitment rates, retention, acceptability, and intervention fidelity. Exploratory outcomes (dyspnea, fatigue, quality of life, physical function, and body composition) will be assessed pre- and post-intervention. Discussion: This study will provide important data on the feasibility of delivering this intervention and inform procedures for a future randomized controlled trial. Trial registration: Record not yet public [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
42. Multi-donor × elite-based populations reveal QTL for low-lodging wheat.
- Author
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Dreccer, M. Fernanda, Macdonald, Bethany, Farnsworth, Claire A., Paccapelo, M. Valeria, Awasi, Mary Anne, Condon, Anthony G., Forrest, Kerrie, Lee Long, Ian, and McIntyre, C. Lynne
- Subjects
- *
CULTIVARS , *GENETIC correlations , *GENETIC markers , *GENOTYPES , *CHROMOSOMES , *GERMPLASM - Abstract
Key message: Low-lodging high-yielding wheat germplasm and SNP-tagged novel alleles for lodging were identified in a process that involved selecting donors through functional phenotyping for underlying traits with a designed phenotypic screen, and a crossing strategy involving multiple-donor × elite populations. Lodging is a barrier to achieving high yield in wheat. As part of a study investigating the potential to breed low-lodging high-yielding wheat, populations were developed crossing four low-lodging high-yielding donors selected based on lodging related traits, with three cultivars. Lodging was evaluated in single rows in an early generation and subsequently in plots in 2 years with contrasting lodging environment. A large number of lines lodged less than their recurrent parents, and some were also higher yielding. Heritability for lodging was high, but the genetic correlation between contrasting environments was intermediate-low. Lodging genotypic rankings in single rows did not correlate well with plots. Populations from the highest lodging background were genotyped (90 K iSelect BeadChip array). Fourteen markers on nine chromosomes were associated with lodging, differing under high- versus low-lodging conditions. Of the fourteen markers, ten were found to co-locate with previously identified QTL for lodging-related traits or at homoeologous locations for previously identified lodging-related QTL, while the remaining four markers (in chromosomes 2D, 4D, 7B and 7D) appear to map to novel QTL for lodging. Lines with more favourable markers lodged less, suggesting value in these markers as a selection tool. This study demonstrates that the combination of donor functional phenotyping, screen design and crossing strategy can help identify novel alleles in germplasm without requiring extensive bi-parental populations. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
43. TaHsfA6f is a transcriptional activator that regulates a suite of heat stress protection genes in wheat (Triticum aestivum L.) including previously unknown Hsf targets.
- Author
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Xue, Gang-Ping, Drenth, Janneke, and McIntyre, C. Lynne
- Subjects
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WHEAT , *PHYSIOLOGICAL effects of heat , *TRANSCRIPTION factors , *GENES , *HIGH temperatures - Abstract
A wheat HsfA6 member acts as a transcriptional activator for up-regulation of a suite of heat stress protection genes including previously unknown Hsf targets such as Golgi anti-apoptotic protein.Heat stress is a significant environmental factor adversely affecting crop yield. Crop adaptation to high-temperature environments requires transcriptional reprogramming of a suite of genes involved in heat stress protection. This study investigated the role of TaHsfA6f, a member of the A6 subclass of heat shock transcription factors, in the regulation of heat stress protection genes in Triticum aestivum (bread wheat), a poorly understood phenomenon in this crop species. Expression analysis showed that TaHsfA6f was expressed constitutively in green organs but was markedly up-regulated during heat stress. Overexpression of TaHsfA6f in transgenic wheat using a drought-inducible promoter resulted in up-regulation of heat shock proteins (HSPs) and a number of other heat stress protection genes that included some previously unknown Hsf target genes such as Golgi anti-apoptotic protein (GAAP) and the large isoform of Rubisco activase. Transgenic wheat plants overexpressing TaHsfA6f showed improved thermotolerance. Transactivation assays showed that TaHsfA6f activated the expression of reporter genes driven by the promoters of several HSP genes (TaHSP16.8, TaHSP17, TaHSP17.3, and TaHSP90.1-A1) as well as TaGAAP and TaRof1 (a co-chaperone) under non-stress conditions. DNA binding analysis revealed the presence of high-affinity TaHsfA6f-binding heat shock element-like motifs in the promoters of these six genes. Promoter truncation and mutagenesis analyses identified TaHsfA6f-binding elements that were responsible for transactivation of TaHSP90.1-A1 and TaGAAP by TaHsfA6f. These data suggest that TaHsfA6f is a transcriptional activator that directly regulates TaHSP, TaGAAP, and TaRof1 genes in wheat and its gene regulatory network has a positive impact on thermotolerance. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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- View/download PDF
44. Optimising surgical tracheostomy provision for the intensive care unit: a multicycle audit of 36 cases.
- Author
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Lobo, N., Hall, A., McIntyre, C., Meacher, R., and Mace, A.
- Subjects
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TRACHEOTOMY , *INTENSIVE care units , *MEDICAL protocols , *MEDICAL databases , *MEDICAL care - Abstract
A letter on a study on surgical tracheostomy provision for the Intensive Care Unit (ICU) and efficiency of an elective tracheostomy is presented. It is noted that retrospective audit between February 1, 2014 and June 1, 2014 of all patients in ICU undergoing surgical tracheostomies was carried out. It is noted that a protocol was significantly decreased waiting times to surgical tracheostomy.
- Published
- 2016
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- View/download PDF
45. 68 (PB-068) Poster - Availability and appropriateness of exercise services for people with breast cancer in regional Western Australia.
- Author
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Andrew, C., Dennett, A., De Leo, A., McIntyre, C., Zissiadis, Y., Lewis, J., and Kennedy, M.
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HEALTH services accessibility , *EXERCISE , *BREAST tumors , *CANCER patients , *CONFERENCES & conventions , *MEDICAL needs assessment - Published
- 2024
- Full Text
- View/download PDF
46. Intravital microscopic observation of the microvasculature during hemodialysis in healthy rats.
- Author
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Janssen, B. G. H., Zhang, Y. M., Kosik, I., Akbari, A., and McIntyre, C. W.
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RATS , *PHYSIOLOGICAL stress , *MICROCIRCULATION disorders , *LABORATORY animals , *HEMODIALYSIS , *LABORATORY rats , *PERFUSION , *BLOOD flow - Abstract
Hemodialysis (HD) provides life-saving treatment for kidney failure. Patient mortality is extremely high, with cardiovascular disease (CVD) being the leading cause of death. This results from both a high underlying burden of cardiovascular disease, as well as additional physiological stress from the HD procedure itself. Clinical observations indicate that HD is associated with microvascular dysfunction (MD), underlining the need for a fundamental pathophysiological assessment of the microcirculatory consequences of HD. We therefore successfully developed an experimental small animal model, that allows for a simultaneous real-time assessment of the microvasculature. Using in-house built ultra-low surface area dialyzers and miniaturized extracorporeal circuit, we successfully dialyzed male Wistar Kyoto rats and combined this with a simultaneous intravital microscopic observation of the EDL microvasculature. Our results show that even in healthy animals, a euvolemic HD procedure can induce a significant systemic hemodynamic disturbance and induce disruption of microvascular perfusion (as evidence by a reduction in the proportion of the observed microcirculation receiving blood flow). This study, using a new small animal hemodialysis model, has allowed direct demonstration that microvascular blood flow in tissue in skeletal muscle is acutely reduced during HD, potentially in concert with other microvascular beds. It shows that preclinical small animal models can be used to further investigate HD-induced ischemic organ injury and allow rapid throughput of putative interventions directed at reducing HD-induced multi-organ ischemic injury. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
47. QTL for yield and associated traits in the Seri/Babax population grown across several environments in Mexico, in the West Asia, North Africa, and South Asia regions.
- Author
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Lopes, Marta, Reynolds, Matthew, McIntyre, C., Mathews, Ky, Jalal Kamali, M., Mossad, Moussa, Feltaous, Yousef, Tahir, Izzat, Chatrath, Ravish, Ogbonnaya, Francis, and Baum, Michael
- Subjects
- *
LOCUS in plant genetics , *PLANT population genetics , *EFFECT of heat on plants , *DROUGHT tolerance , *PLANT gene mapping ,WHEAT genetics - Abstract
Heat and drought adaptive quantitative trait loci (QTL) in a spring bread wheat population resulting from the Seri/Babax cross designed to minimize confounding agronomic traits have been identified previously in trials conducted in Mexico. The same population was grown across a wide range of environments where heat and drought stress are naturally experienced including environments in Mexico, West Asia, North Africa (WANA), and South Asia regions. A molecular genetic linkage map including 475 marker loci associated to 29 linkage groups was used for QTL analysis of yield, days to heading (DH) and to maturity (DM), grain number (GM2), thousand kernel weight (TKW), plant height (PH), canopy temperature at the vegetative and grain filling stages (CTvg and CTgf), and early ground cover. A QTL for yield on chromosome 4A was confirmed across several environments, in subsets of lines with uniform allelic expression of a major phenology QTL, but not independently from PH. With terminal stress, TKW QTL was linked or pleiotropic to DH and DM. The link between phenology and TKW suggested that early maturity would favor the post-anthesis grain growth periods resulting in increased grain size and yields under terminal stress. GM2 and TKW were partially associated with markers at different positions suggesting different genetic regulation and room for improvement of both traits. Prediction accuracy of yield was improved by 5 % when using marker scores of component traits (GM2 and DH) together with yield in multiple regression. This procedure may provide accumulation of more favorable alleles during selection. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
48. Disease burden of the most commonly detected respiratory viruses in hospitalized patients calculated using the disability adjusted life year (DALY) model
- Author
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Gaunt, E.R., Harvala, H., McIntyre, C., Templeton, K.E., and Simmonds, P.
- Subjects
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RESPIRATORY diseases , *RESPIRATORY infections , *PATHOGENIC microorganisms , *PARAINFLUENZA viruses , *RHINOVIRUSES , *ADENOVIRUSES , *HOSPITAL patients - Abstract
Abstract: Background: The most common acute infections occur in the respiratory tract. Recent discoveries of several novel viruses have markedly increased the repertoire of agents understood to cause presentations of acute respiratory disease. Objectives: Further understanding is needed of the relative importance of newly discovered pathogens in the clinical setting to provide clinicians with an indication of appropriate diagnostic and therapeutic targets. To address this, quantification of the disease burden of respiratory viruses in hospitalized patients was undertaken. Study design: Disease burden caused by respiratory viruses in hospitalized patients was quantified using the World Health Organization endorsed DALY model. Diagnostic testing results from samples collected over three years for adenovirus (AdV), influenzas A and B, parainfluenza viruses 1, 2 and 3 (PIV-1, -2 and -3), respiratory syncytial virus (HRSV), and previously published retrospective screening for human metapneumovirus, rhinoviruses, and four respiratory coronaviruses were applied to the DALY model. Disability weights were calculated per 1000 hospitalized patients in age banded groups. Results: Strikingly different disease burden profiles were observed in children and adults. Adenoviruses were among the leading cause of respiratory presentations in children but not adults. HRSV and influenza A were consistently one of the greatest causes of disease regardless of sampled population. Rhinoviruses and PIV-3 were significant pathogens in all groups except those aged 16–64 years. In immunocompromised patients rhinoviruses were the leading viral cause of disease. Conclusions: These analyses provide a framework which can be used to identify where finite resources should be directed in respiratory therapeutics and vaccine development. [Copyright &y& Elsevier]
- Published
- 2011
- Full Text
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49. Static and dynamic properties of cavity solitons in VCSELs with optical injection.
- Author
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Prati, F., Tissoni, G., McIntyre, C., and Oppo, G. L.
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SOLITONS , *DYNAMICS , *MATHEMATICAL optimization , *SPEED , *DIMENSIONS , *OPTICS - Abstract
The static and dynamical properties of cavity solitons in a vertical cavity surface emitting laser with optical injection are investigated. Analytical results about the instabilities affecting the homogeneous steady state are presented. These instabilities play a key role in the determination of the necessary and favorable conditions for cavity soliton existence. Optimization of an all-optical delay line by tuning the injected field frequency leads to a five fold increase of the soliton velocity in the transverse plane. Finally, the phenomenon of cavity soliton merging is applied to combine input signals in optical information processing and to manipulate two dimensional optical memories. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
50. Effects of peritoneal dialysis fluid biocompatibility on baroreflex sensitivity.
- Author
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John, S. G., Selby, N. M., and McIntyre, C. W.
- Subjects
- *
BAROREFLEXES , *BIOCOMPATIBILITY , *BLOOD pressure , *INSULIN , *HYPERGLYCEMIA - Abstract
Conventional low biocompatibility peritoneal dialysis (PD) fluid composition has been driven by manufacturing expediency and cost limitations. PD is associated with significant acute changes in cardiovascular functional parameters, at least in part influenced by fluid composition. Short-term control of blood pressure (BP) is under control of the baroreflex arc. The aim of this study was to investigate the effects of PD fluid biocompatibility on baroreflex sensitivity (BRS). We studied 10 non-diabetic established continuous ambulatory PD patients, in a randomized crossover trial comparing conventional and biocompatible PD fluids. Systemic hemodynamics were continuously monitored using digital pulse-wave analysis. Plasma glucose and insulin were assessed during treatment with both 1.36% and 3.86% glucose-containing fluids. BRS was calculated offline from continuous BP and interbeat interval data. BRS was significantly higher with conventional PD fluid during both 1.36% (P<0.001) and 3.86% (P<0.001) dwells. Systolic BP was higher; heart rate, stroke volume, and cardiac output were lower; and total peripheral resistance increased during exposure to either fluid. There were significant differences between fluids with respect to the magnitude of these responses. Plasma glucose and insulin concentrations, and ultrafiltration volumes were significantly higher during the 3.86% dwell than the 1.36% dwell, but there were no differences between standard and biocompatible fluids. We have demonstrated for the first time that PD fluid biocompatibility rapidly affects BRS. These changes occur against a background of cardiovascular variability, hyperinsulinemia, and hyperglycemia. Further research is needed to explore the mechanism and, more importantly, the consequences of these findings.Kidney International (2008) 73, S119–S124; doi:10.1038/sj.ki.5002612 [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
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