46 results on '"Mekonnen, Z. A."'
Search Results
2. Vaccine Inequity and Hesitancy: A Vicious Cycle Undermining the Fight Against the COVID-19 Pandemic
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Gudina EK, Mekonnen Z, and Yilma D
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covid-19 ,sars-cov-2 ,variant of concern ,vaccine hesitancy ,vaccine scepticism ,vaccine inequity ,Public aspects of medicine ,RA1-1270 - Abstract
Esayas Kebede Gudina,1 Zeleke Mekonnen,2 Daniel Yilma1 1Department of Internal Medicine, Jimma University Institute of Health, Jimma, Ethiopia; 2School of Medical Laboratory Sciences, Jimma University Institute of Health, Jimma, EthiopiaCorrespondence: Esayas Kebede Gudina, Department of Internal Medicine, Jimma University Institute of Health, P. O.Box 5058, Jimma, Ethiopia, Email esayas.gudina@ju.edu.etAbstract: The world has come a long way in the fight against the COVID-19 pandemic by averting the initially feared humanitarian crisis and by producing effective vaccines in a record time. Paradoxically, more new daily cases are being reported today than when there was not any effective vaccine around. The success against the pandemic so far is dented by inadequate vaccine supply in most low-income countries and widespread vaccine hesitancy. By the end of 2021, only half of WHO Member States have reached the target of immunizing 40% of their populations, while only less than 10% of the population in low-income countries have received at least one dose of the vaccine. This happened while more than nine billion doses of the vaccines were administered globally, predominantly in rich countries. On the backdrop of these man-made factors, the evolution of highly mutated variants of the virus is causing more uncertainties than the pre-vaccine time. If the vaccine inequities and hesitancy are not properly addressed, we are likely to enter into the vicious cycle of inequitable vaccine distribution leading to low vaccination rates in most low-income countries where the majority of the world population resides. This will ultimately enhance sustained transmission of the virus, leading to evolution of new variants of concern. As the highly mutated variants are likely to infect both vaccinated and unvaccinated individuals, it will inevitably lead to major doubts in the effectiveness and acceptance of the vaccines. In this review, we present how this vicious cycle may prolong the pandemic and discuss the importance of concerted global action to tackle it.Keywords: COVID-19, SARS-CoV-2, variants of concern, vaccine hesitancy, vaccine scepticism, vaccine inequity
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- 2022
3. Lipid and Lipoprotein Profile in HIV-Infected and Non-Infected Diabetic Patients: A Comparative Cross-Sectional Study Design, Southwest Ethiopia
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Woyesa S, Mamo A, Mekonnen Z, Abebe G, Gudina EK, and Milkesa T
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diabetes mellitus ,hypertriglyceridemia ,lipoproteins ,hypercholesterolemia ,hiv-infection. ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Shiferaw Woyesa,1 Aklilu Mamo,1 Zeleke Mekonnen,1 Gemeda Abebe,1 Esayas Kebede Gudina,2 Tesfaye Milkesa3 1School of Medical Laboratory Science, Jimma University, Jimma, Ethiopia; 2Department of Internal Medicine, Jimma University, Jimma, Ethiopia; 3Ambo University Hospital, Ambo, EthiopiaCorrespondence: Shiferaw Woyesa Email bekeleshiferaw@yahoo.comBackground: Lipoproteins are complexes of lipids and proteins that are essential for the transport of cholesterol, triglycerides, and fat-soluble vitamins. The linkage between chronic diseases like diabetes mellitus and HIV infection increases the complication of the diseases and worsens the clinical outcome of the patients.Purpose: To assess and compare lipid and lipoprotein profiles among HIV-infected and non-infected diabetic patients, and to identify independent predictor variables for abnormal lipid and lipoprotein profiles.Patients and Methods: A comparative cross-sectional study design was used to carry out the research, and a convenient sampling technique was used to include 96 adult diabetic patients (48 HIV-infected and 48 non-infected diabetics). Socio-demographic and clinical data were collected by interviewer-administered questionnaire. Five milliliter blood sample was collected and processed for lipid and lipoprotein profile measurement. Multivariate and bivariate logistic regressions were used to identify independent predictor variables for abnormal lipid and lipoprotein profiles.Results: The prevalence of diabetic dyslipidemia was 41.7% and 37.5% in HIV-infected and non-infected diabetic patients, respectively. Hypercholesterolemia was more commonly detected among HIV-infected diabetic patients than non-HIV-infected, 25.0% versus 18.8%, respectively. Similarly, hypertriglyceridemia was more commonly observed in HIV-infected (31.3%) than non-infected diabetic patients (20.8%). About 25.0% HIV-infected diabetic patients had combined hyperlipidemia (hypercholesterolemia plus hypertriglyceridemia); and about 4.2% had hypoalphalipoproteinemia or isolated low HDL-C. Being female and long duration of diabetes mellitus were independent predictor variables for abnormal lipid and lipoprotein profiles in HIV-infected patients. Similarly, being female and high blood pressure were independent predictor variables in non-HIV-infected diabetic patients.Conclusion: High prevalence lipid and lipoprotein abnormalities were detected in HIV-infected diabetic patients even though the abnormalities were also common in non-HIV co-morbid diabetic patients. Hence, proactive screening and treatment of blood glucose, lipid, and lipoprotein abnormalities are critically important and should be part of comprehensive HIV care.Keywords: diabetes mellitus, hypertriglyceridemia, lipoproteins, hypercholesterolemia, HIV-infection
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- 2021
4. Evaluation of Adult Outpatient Antibiotics Use at Jimma Medical Center (with Defined Daily Doses for Usage Metrics)
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Melaku T, Gashaw M, Chelkeba L, Berhane M, Bekele S, Lemi G, Wakjira T, Tesfaw G, Mekonnen Z, Ali S, Kroidl A, Wieser A, Froeschl G, and Gudina EK
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antibiotics ,antibiotics consumption ,antibiotic resistance ,defined daily dose ,ethiopia ,Infectious and parasitic diseases ,RC109-216 - Abstract
Tsegaye Melaku,1 Mulatu Gashaw,2 Legese Chelkeba,3 Melkamu Berhane,4 Sisay Bekele,5 Gemechu Lemi,6 Tekle Wakjira,7 Getnet Tesfaw,2 Zeleke Mekonnen,2 Solomon Ali,8 Arne Kroidl,9,10 Andreas Wieser,9,10 Guenter Froeschl,9,10 Esayas Kebede Gudina11 1School of Pharmacy, Jimma University, Jimma, Ethiopia; 2School of Medical Laboratory Sciences, Jimma University, Jimma, Ethiopia; 3Department of Pharmacology and Clinical Pharmacy, School of Pharmacy, Addis Ababa University, Addis Ababa, Ethiopia; 4Department of Pediatrics and Child Health, Jimma University, Jimma, Ethiopia; 5Department of Ophthalmology, Jimma University, Jimma, Ethiopia; 6Department of Surgery, Jimma University, Jimma, Ethiopia; 7Department of Obstetrics and Gynecology, Jimma University, Jimma, Ethiopia; 8Department of Microbiology, Immunology and Parasitology, St. Paul’s Hospital Millennium Medical College, Addis Ababa, Ethiopia; 9Division of Infectious Diseases and Tropical Medicine, University Hospital, Ludwig-Maximilians-Universität, Munich, Germany; 10German Center for Infection Research (DZIF), Partner Site Munich, Munich, Germany; 11Department of Internal Medicine, Jimma University, Jimma, EthiopiaCorrespondence: Tsegaye MelakuSchool of Pharmacy, Jimma University, Jimma, EthiopiaTel +251 913765609Email tsegayemlk@yahoo.comIntroduction: Inappropriate antibiotic use is a major public health concern and driver of antibiotic resistance. Excessive exposure to antibiotics results in the emergence and spread of drug-resistant microorganisms. This study aimed to measure the volume of antibiotic consumption at the outpatient settings in a tertiary-care teaching hospital in Ethiopia.Methods: A cross-sectional study was undertaken from February 01, 2019 to March 31, 2019 at Jimma Medical Center in southwest Ethiopia. Antibiotics use was analyzed using Anatomical Therapeutic Chemical Classification and Defined Daily Dose (DDD) system. Antibiotic use was calculated as DDD per 100 outpatients per day. Antibiotics were classified based on World Health Organization “AWaRe” classification scheme as “Access”, “Watch” and “Reserve” group antibiotics and measured their consumption intensity.Results: A total of 496 adult patients were included in the study. The mean (SD) age of participants was 33.07 (14.05) years. The total amount of antibiotics consumed was 5.31 DDD/100 outpatients per day. Ciprofloxacin was the most commonly [122 (21.12%)] prescribed antibiotics with DDD/100 outpatients per day value of 1.13, followed by amoxicillin [68 (11.76%)] with DDD/100 outpatients per day value of 0.44, and azithromycin [61 (10.55%)] with DDD/100 outpatients per day value of 0.51. On antibiotic consumption index, antibiotics in the “Watch” group had 2.10 DDD/100 outpatients per day.Conclusion: There was high consumption of antibiotics in the study setting. Based on the use control criteria, half of the antibiotics used were in the “Watch” group. The high level of consumptions of antibiotics, such as ciprofloxacin, norfloxacin, and azithromycin, in particular, requires further scrutiny and calls for an urgent implementation of an antibiotic stewardship program at the hospital.Keywords: antibiotics, antibiotics consumption, antibiotic resistance, defined daily dose, Ethiopia
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- 2021
5. Neurogenetik der Schizophrenie: Erkenntnisse aus Studien basierend auf Datenaustausch und globalen Partnerschaften
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Adorjan, K., Schulze, T. G., Budde, M., Heilbronner, U., Tessema, F., Mekonnen, Z., and Falkai, P.
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- 2021
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6. Glycemic Control Among People Living with Diabetes and Human Immunodeficiency Virus in Ethiopia: Leveraging Clinical Care for the Looming Co-Epidemics
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Melaku T, Chelkeba L, Mekonnen Z, and Kumela K
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human immune deficiency virus ,glycemic control ,treatment outcome ,self-care behavior ,Specialties of internal medicine ,RC581-951 - Abstract
Tsegaye Melaku,1 Legese Chelkeba,1 Zeleke Mekonnen,2 Kabaye Kumela1 1Department of Clinical Pharmacy, School of Pharmacy, Institute of Health, Jimma University, Jimma, Ethiopia; 2School of Medical Laboratory Sciences, Institute of Health, Jimma University, Jimma, EthiopiaCorrespondence: Tsegaye MelakuJimma University, Jimma, EthiopiaTel +251 913765609Email tsegayemlk@yahoo.comBackground: Antiretroviral therapy has decreased human immunodeficiency virus related mortality. However, the incidence of diabetes mellitus is increasing among people living with human immunodeficiency virus and adds complexity to the standards of care.Objective: The study was aimed to determine the glycemic control and delivery of clinical care among people living with diabetes and human immunodeficincy virus in Ethiopia.Methods: A comparative prospective cohort study was conducted among patients living with diabetes at follow-up clinics of Jimma Medical Center in two study arms. The first arm was people living with diabetes and human immunodeficiency virus. The second arm was human immunodeficiency virus negative patients living with diabetes. The expanded English version of the summary of diabetes self-care activities scale was used to measure self-care behaviors. In order to identify the predictors of glycemic control, multivariable Cox regression analysis was used. Statistical significance at p-value ≤ 0.05 was considered.Results: A total of 297 eligible participants were followed for one year, with a mean age of 44.35± 12.55 years. Males accounted for 55.9%. After one year of follow-up, 61.9% of diabetes people living with human immunodeficiency virus, and 49% of human immunodeficiency virus-negative patients with diabetes poorly met blood glucose target (p=0.037). Female gender [AHR: 2.72; 95% CI (1.21– 5.72)], age > 31 years [AHR: 2.48; 95% CI (1.34– 11.01)], increased waist circumference [AHR: 3.64; 95% CI (2.57– 16.12)], overweight [AHR: 3.63; 95% CI (1.65– 22.42)], chronic disease comorbidity [AHR: 2.02; 95% CI (1.44– 2.84)], human immunodeficiency virus infection [AHR: 3.47; 95% CI (2.03– 23.75)], living longer with diabetes (> 5 years) [AHR: 3.67; 95% CI (3.26– 4.14)] showed a higher risk of blood sugar control failure and were independent predictors of uncontrolled glycemia. Tuberculosis infection increased the risk of uncontrolled blood sugar among people living with diabetes and human immunodeficency virus[AHR:3.82;95% CI(2.86-5.84].Conclusion: Significant gaps were observed in achieving the recommended glycemic target and involvement of patients on self-care care behavior in the study area. The co-occurrence of tuberculosis, human immunodeficiency virus, and diabetes is triple trouble needing special attention in their management. It is high time to leverage the clinical care of the looming co-epidemics through chronic comprehensive care clinic.Keywords: human immunodeficiency virus, glycemic control, treatment outcome, self-care behavior
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- 2020
7. A Facility-Based Cross-Sectional Study on the Implementation of the IMNCI Program in Public Health Centers of Soro District, Hadiya Zone, Southern Ethiopia
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Gintamo B, Azhar Khan M, Gulilat H, Mekonnen Z, Kumar Shukla R, and Malik T
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imnci ,healthcare provider ,practice ,hadiya zone ,southern ethiopia ,Pediatrics ,RJ1-570 - Abstract
Binyam Gintamo,1 Mohammed Azhar Khan,1 Henok Gulilat,1 Zeleke Mekonnen,2 Rakesh Kumar Shukla,1 Tabarak Malik3 1Department of Biotechnology, Faculty of Applied Sciences and Biotechnology, Shoolini University, Bajhol, HP, India; 2School of Medical Laboratory Sciences, Institute of Health, Jimma University, Jimma, Ethiopia; 3Department of Biochemistry, College of Medicine & Health Sciences, University of Gondar, Gondar, EthiopiaCorrespondence: Tabarak Malik Email malikitrc@gmail.comBackground: Integrated Management of Neonatal and Childhood Illnesses (IMNCI) is one of the child health programs and it provides an integrated approach and focuses on the well-being of the whole child. Globally, nearly nine million children pass away every year with preventable and treatable conditions. IMNCI program is provided by the health facilities to aid children under five years of age from illness. This study is aimed at assessing the implementation of the IMNCI program in public health centers of Soro District, Hadiya Zone, Southern Ethiopia.Methods: The implementation of the IMNCI program was studied using a facility-based cross-sectional study design integrating both qualitative and quantitative data collected from 9 public health centers in Soro district, Hadiya Zone, Southern Ethiopia. A total of 390 (92%) caregivers were included in the study by the proportion of under-five outpatient coverage from each public health center. Data were collected through face to face interviewer-administered questionnaires, document review checklist, observation checklist, and in-depth interview guide.Results: Based on agreed criteria resources’ availability was 80.11% and judged as fair. Less than 50% of health centers (HCs) had cotrimoxazole and gentamycin. The compliance of health workers was 85.5% and judged as good. Below 85% of prescribed drugs were given correctly for the classified disease. Counseling on medication and follow updates were given for less than 80% of caretakers. The overall satisfaction of clients on IMNCI was 79.5% according to the judging criteria. The caretakers who took less than 30 minutes to reach the health center on foot (AOR=7.7, 95% CI [3.787– 15.593]), caretakers who waited for less than 30 minutes to see the health care provider (AOR=2, 95% CI [1.00– 3.77]), the caretakers who found prescribed drugs in HCs pharmacy (AOR = 3.7,95% CI [1.91– 7.34]), the caretakers who have less than four family size (AOR=2, 95% [1.109– 4.061]) were more satisfied in IMNCI services, whereas, caregivers who measured the weight of child were negatively associated with satisfaction (AOR= 0.24, 95% CI [0.13– 0.45]).Conclusion: This study found that the overall implementation of the Integrated Management of Neonatal and Childhood Illnesses was good. All health centers had trained health workers, ORS, paracetamol, vitamin A, chart booklet, and IMNCI guidelines were available; however, cotrimoxazole, gentamycin, ampicillin, and mebendazole were less abundant drugs in health centers. Further, a large-scale study is required to be conducted in future in other districts to ensure proper implementation of the IMNCI program in Ethiopia.Keywords: IMNCI, healthcare provider, practice, Hadiya zone, southern Ethiopia
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- 2020
8. Forecasting the Hydroclimatic Signature of the 2015/16 El Niño Event on the Western United States
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Wanders, N., Bachas, A., He, X. G., Huang, H., Koppa, A., Mekonnen, Z. T., Pagán, B. R., Peng, L. Q., Vergopolan, N., Wang, K. J., Xiao, M., Zhan, S., Lettenmaier, D. P., and Wood, E. F.
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- 2017
9. Microbial contribution to post-fire tundra ecosystem recovery over the 21st century
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Bouskill, NJ, Bouskill, NJ, Mekonnen, Z, Zhu, Q, Grant, R, Riley, WJ, Bouskill, NJ, Bouskill, NJ, Mekonnen, Z, Zhu, Q, Grant, R, and Riley, WJ
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Tundra ecosystems have experienced an increased frequency of fire, and this trend is predicted to continue throughout the 21st Century. Post-fire recovery is underpinned by complex interactions between microbial functional groups that drive nutrient cycling. Here we use a mechanistic model to demonstrate an acceleration of the nitrogen cycle post-fire driven by changes in niche space and microbial competitive dynamics. We show that over the first 5-years post-fire, fast-growing bacterial heterotrophs colonize regions of the soil previously occupied by slower-growing saprotrophic fungi. The bacterial heterotrophs mineralize organic matter, releasing nutrients into the soil. This pathway outweighs new sources of nitrogen and facilitates the recovery of plant productivity. We broadly show here that while consideration of distinct microbial metabolisms related to carbon and nutrient cycling remains rare in terrestrial ecosystem models, they are important when considering the rate of ecosystem recovery post-disturbance and the feedback to soil nutrient cycles on centennial timescales.
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- 2022
10. Impoverishing Roots Will Improve Wheat Yield and Profitability Through Increased Water and Nitrogen Use Efficiencies
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Woo, D. K., primary, Riley, W. J., additional, Paez‐Garcia, A., additional, Marklein, A. R., additional, Mekonnen, Z. A., additional, Liu, X., additional, Ma, X., additional, Blancaflor, E., additional, and Wu, Y., additional
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- 2021
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11. P140 Prevalence, risk factors and association with delivery outcome of curable sexually transmitted infections among pregnant women in Southern Ethiopia
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Zenebe, M, primary, Mekonnen, Z, additional, Loha, E, additional, and Padalko, E, additional
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- 2021
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12. Evaluation of the therapeutic efficacy of praziquantel against schistosomes in seven countries with ongoing large-scale deworming programs
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Levecke, B., Vlaminck, J., Andriamaro, L., Ame, S., Belizario, V., Degarege, A., Engels, D., Erko, B., Garba, A.D., Kaatano, G.M., Mekonnen, Z., Montresor, A., Olliaro, P., Pieri, O.S., Sacko, M., Sam-Wobo, S.O., Tchuem Tchuenté, L.A., Webster, J.P., and Vercruysse, J.
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- 2020
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13. First international external quality assessment scheme of nucleic acid amplification tests for the detection ofSchistosoma and soil-transmitted helminths, includingStrongyloides: A pilot study
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Cools, P., Lieshout, L.M.C. (Leo M.) van, Koelewijn, R. (Rob), Addiss, D., Ajjampur, S.S.R., Ayana, M., Bradbury, R.S., Cantera, J.L., Dana, D., Fischer, K, Imtiaz, R., Kabagenyi, J., Lok, J., McCarthy, J. (James), Mejia, R., Mekonnen, Z., Njenga, S.M., Othman, N. (Norlijah), Shao, H.G., Traub, R., Van Esbroeck, M., Vercruysse, J. (Jozef), Vlaminck, J., Williams, S.A., Verweij, J. J., Hellemond, J.J. (Jaap) van, Levecke, B., Cools, P., Lieshout, L.M.C. (Leo M.) van, Koelewijn, R. (Rob), Addiss, D., Ajjampur, S.S.R., Ayana, M., Bradbury, R.S., Cantera, J.L., Dana, D., Fischer, K, Imtiaz, R., Kabagenyi, J., Lok, J., McCarthy, J. (James), Mejia, R., Mekonnen, Z., Njenga, S.M., Othman, N. (Norlijah), Shao, H.G., Traub, R., Van Esbroeck, M., Vercruysse, J. (Jozef), Vlaminck, J., Williams, S.A., Verweij, J. J., Hellemond, J.J. (Jaap) van, and Levecke, B.
- Abstract
Background Nucleic acid amplification tests (NAATs) are increasingly being used as diagnostic tools for soil-transmitted helminths (STHs; Ascaris lumbricoides, Trichuris trichiura, Necator americanus, Ancylostoma duodenale and A. ceylanicum), Strongyloides stercoralis and Schistosoma in human stool. Currently, there is a large diversity of NAATs being applied, but an external quality assessment scheme (EQAS) for these diagnostics is lacking. An EQAS involves a blinded process where test results reported by a laboratory are compared to those reported by reference or expert laboratories, allowing for an objective assessment of the diagnostic performance of a laboratory. In the current study, we piloted an international EQAS for these helminths (i) to investigate the feasibility of designing and delivering an EQAS; (ii) to assess the diagnostic performance of laboratories; and (iii) to gain insights into the different NAAT protocols used. Methods and principal findings A panel of twelve stool samples and eight DNA samples was validated by six expert laboratories for the presence of six helminths (Ascaris, Trichuris, N. americanus, Ancylostoma, Strongyloides and Schistosoma). Subsequently this panel was sent to 15 globally dispersed laboratories. We found a high degree of diversity among the different DNA extraction and NAAT protocols. Although most laboratories performed well, we could clearly i
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- 2020
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14. Impact of Different Sampling Schemes for Decision Making in Soil-Transmitted Helminthiasis Control Programs
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Coffeng, L.E. (Luc), Malizia, V. (Veronica), Vegvari, C. (Carolin), Cools, P. (Piet), Halliday, K.E. (Katherine E.), Levecke, B. (Bruno), Mekonnen, Z. (Zeleke), Gichuki, P.M. (Paul M.), Sayasone, S. (Somphou), Sarkar, R. (Rajiv), Shaali, A. (Ame), Vlaminck, J. (Johnny), Anderson, R.M. (Roy M.), Vlas, S.J. (Sake) de, Coffeng, L.E. (Luc), Malizia, V. (Veronica), Vegvari, C. (Carolin), Cools, P. (Piet), Halliday, K.E. (Katherine E.), Levecke, B. (Bruno), Mekonnen, Z. (Zeleke), Gichuki, P.M. (Paul M.), Sayasone, S. (Somphou), Sarkar, R. (Rajiv), Shaali, A. (Ame), Vlaminck, J. (Johnny), Anderson, R.M. (Roy M.), and Vlas, S.J. (Sake) de
- Abstract
Starting and stopping preventive chemotherapy (PC) for soil-transmitted helminthiasis is typically based on the prevalence of infection as measured by Kato-Katz (KK) fecal smears. Kato-Katz-based egg counts can vary highly over repeated stool samples and smears. Consequentially, the sensitivity of KK-based surveys depends on the number of stool samples per person and the number of smears per sample. Given finite resources, collecting multiple samples and/or smears means screening fewer individuals, thereby lowering the statistical precision of prevalence estimates. Using population-level data from various epidemiological settings, we assessed the performance of different sampling schemes executed within the confines of the same budget. We recommend the use of single-slide KK for determining prevalence of moderate-to-heavy intensity infection and policy decisions for starting and continuing PC; more sensitive sampling schemes may be required for policy decisions involving stopping PC. Our findings highlight that guidelines should include specific guidance on sampling schemes.
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- 2020
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15. First international external quality assessment scheme of nucleic acid amplification tests for the detection of Schistosoma and soil-transmitted helminths, including Strongyloides: A pilot study
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Periago, MV, Cools, P, van Lieshout, L, Koelewijn, R, Addiss, D, Ajjampur, SSR, Ayana, M, Bradbury, RS, Cantera, JL, Dana, D, Fischer, K, Imtiaz, R, Kabagenyi, J, Lok, J, McCarthy, J, Mejia, R, Mekonnen, Z, Njenga, SM, Othman, N, Shao, H, Traub, R, Van Esbroeck, M, Vercruysse, J, Vlaminck, J, Williams, SA, Verweij, JJ, van Hellemond, JJ, Levecke, B, Periago, MV, Cools, P, van Lieshout, L, Koelewijn, R, Addiss, D, Ajjampur, SSR, Ayana, M, Bradbury, RS, Cantera, JL, Dana, D, Fischer, K, Imtiaz, R, Kabagenyi, J, Lok, J, McCarthy, J, Mejia, R, Mekonnen, Z, Njenga, SM, Othman, N, Shao, H, Traub, R, Van Esbroeck, M, Vercruysse, J, Vlaminck, J, Williams, SA, Verweij, JJ, van Hellemond, JJ, and Levecke, B
- Abstract
BACKGROUND: Nucleic acid amplification tests (NAATs) are increasingly being used as diagnostic tools for soil-transmitted helminths (STHs; Ascaris lumbricoides, Trichuris trichiura, Necator americanus, Ancylostoma duodenale and A. ceylanicum), Strongyloides stercoralis and Schistosoma in human stool. Currently, there is a large diversity of NAATs being applied, but an external quality assessment scheme (EQAS) for these diagnostics is lacking. An EQAS involves a blinded process where test results reported by a laboratory are compared to those reported by reference or expert laboratories, allowing for an objective assessment of the diagnostic performance of a laboratory. In the current study, we piloted an international EQAS for these helminths (i) to investigate the feasibility of designing and delivering an EQAS; (ii) to assess the diagnostic performance of laboratories; and (iii) to gain insights into the different NAAT protocols used. METHODS AND PRINCIPAL FINDINGS: A panel of twelve stool samples and eight DNA samples was validated by six expert laboratories for the presence of six helminths (Ascaris, Trichuris, N. americanus, Ancylostoma, Strongyloides and Schistosoma). Subsequently this panel was sent to 15 globally dispersed laboratories. We found a high degree of diversity among the different DNA extraction and NAAT protocols. Although most laboratories performed well, we could clearly identify the laboratories that were poorly performing. CONCLUSIONS/SIGNIFICANCE: We showed the technical feasibility of an international EQAS for the NAAT of STHs, Strongyloides and Schistosoma. In addition, we documented that there are clear benefits for participating laboratories, as they can confirm and/or improve the diagnostic performance of their NAATs. Further research should aim to identify factors that explain poor performance of NAATs.
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- 2020
16. Identifying thresholds to classify moderate-to-heavy soil-transmitted helminth intensity infections for FECPAK(G2), McMaster, Mini-FLOTAC and qPCR
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Freeman, MC, Levecke, B, Cools, P, Albonico, M, Ame, S, Angebault, C, Ayana, M, Behnke, JM, Bethony, JM, Cringoli, G, Dana, D, Guillard, B, Viet Hoa, NT, Kang, G, Kattula, D, Keiser, J, Kotze, AC, Matoso, LF, Maurelli, MP, McCarthy, JS, Mekonnen, Z, Mirams, G, Montresor, A, Oliveira, RC, Periago, MV, Pinto, SA, Rinaldi, L, Sayasone, S, Sumo, L, Tchuem-Tchuente, L-A, Cam Thach, DT, Thomas, E, Zeynudin, A, Verweij, JJ, Vlaminck, J, Vercruysse, J, Freeman, MC, Levecke, B, Cools, P, Albonico, M, Ame, S, Angebault, C, Ayana, M, Behnke, JM, Bethony, JM, Cringoli, G, Dana, D, Guillard, B, Viet Hoa, NT, Kang, G, Kattula, D, Keiser, J, Kotze, AC, Matoso, LF, Maurelli, MP, McCarthy, JS, Mekonnen, Z, Mirams, G, Montresor, A, Oliveira, RC, Periago, MV, Pinto, SA, Rinaldi, L, Sayasone, S, Sumo, L, Tchuem-Tchuente, L-A, Cam Thach, DT, Thomas, E, Zeynudin, A, Verweij, JJ, Vlaminck, J, and Vercruysse, J
- Abstract
The World Health Organization (WHO) has defined moderate-to-heavy intensity (M&HI) infections with soil-transmitted helminths (Ascaris lumbricoides, Trichuris trichiura and the two hookworms, Ancylostoma duodenale and Necator americanus) based on specific values of eggs per gram of stool, as measured by the Kato-Katz method. There are a variety of novel microscopy and DNA-based methods but it remains unclear whether applying current WHO thresholds on to these methods allows for a reliable classification of M&HI infections. We evaluated both WHO and method-specific thresholds for classifying the M&HI infections for novel microscopic (FECPAKG2, McMaster and Mini-FLOTAC) and DNA-based (qPCR) diagnostic methods. For this, we determined method-specific thresholds that best classified M&HI infections (defined by Kato-Katz and WHO thresholds; reference method) in two multi-country drug efficacy studies. Subsequently, we verified whether applying these method-specific thresholds improved the agreement in classifying M&HI infections compared to the reference method. When we applied the WHO thresholds, the new microscopic methods mainly misclassified M&HI as low intensity, and to a lesser extent low intensity infection as M&HI. For FECPAKG2, applying the method-specific thresholds significantly improved the agreement for Ascaris (moderate → substantial), Trichuris and hookworms (fair → moderate). For Mini-FLOTAC, a significantly improved agreement was observed for hookworms only (fair → moderate). For the other STHs, the agreement was almost perfect and remained unchanged. For McMaster, the method-specific thresholds revealed a fair to a substantial agreement but did not significantly improve the agreement. For qPCR, the method-specific thresholds based on genome equivalents per ml of DNA moderately agreed with the reference method for hookworm and Trichuris infections. For Ascaris, there was a substantial agreement. We defined method-specific thresholds that improved the cla
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- 2020
17. Impact of Different Sampling Schemes for Decision Making in Soil-Transmitted Helminthiasis Control Programs
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Coffeng, Luc, Malizia, Veronica, Vegvari, C, Cools, P, Halliday, KE, Levecke, B, Mekonnen, Z, Gichuki, PM, Sayasone, S, Sarkar, R, Shaali, A, Vlaminck, J, Anderson, RM, de Vlas, Sake, Coffeng, Luc, Malizia, Veronica, Vegvari, C, Cools, P, Halliday, KE, Levecke, B, Mekonnen, Z, Gichuki, PM, Sayasone, S, Sarkar, R, Shaali, A, Vlaminck, J, Anderson, RM, and de Vlas, Sake
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- 2020
18. First international external quality assessment scheme of nucleic acid amplification tests for the detection ofSchistosoma and soil-transmitted helminths, includingStrongyloides: A pilot study
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Cools, P, van Lieshout, L, Koelewijn, Rob, Addiss, D, Ajjampur, SSR, Ayana, M, Bradbury, RS, Cantera, JL, Dana, D, Fischer, K, Imtiaz, R, Kabagenyi, J, Lok, J, McCarthy, J, Mejia, R, Mekonnen, Z, Njenga, SM, Othman, N, Shao, HG, Traub, R, Van Esbroeck, M, Vercruysse, J, Vlaminck, J, Williams, SA, Verweij, J J, van Hellemond, Jaap, Levecke, B, Cools, P, van Lieshout, L, Koelewijn, Rob, Addiss, D, Ajjampur, SSR, Ayana, M, Bradbury, RS, Cantera, JL, Dana, D, Fischer, K, Imtiaz, R, Kabagenyi, J, Lok, J, McCarthy, J, Mejia, R, Mekonnen, Z, Njenga, SM, Othman, N, Shao, HG, Traub, R, Van Esbroeck, M, Vercruysse, J, Vlaminck, J, Williams, SA, Verweij, J J, van Hellemond, Jaap, and Levecke, B
- Published
- 2020
19. Human papillomavirus type distribution among women with cervical pathology – a study over 4 years at Jimma Hospital, southwest Ethiopia
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Bekele, A., Baay, M., Mekonnen, Z., Suleman, S., and Chatterjee, S.
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- 2010
- Full Text
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20. Methicillin-resistant Staphylococcus aureus with genotyping method among human immunodeficiency virus positive pediatric patients in Northwest Ethiopia: A cross-sectional study design
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Zenebe, Y., Tibebu, M., Begna Tulu, Mekonnen, D., and Mekonnen, Z.
- Abstract
Background: Increasing evidence suggests that methicillin-resistant Staphylococcus aureus (MRSA) infections are becoming more prevalent throughout the human immunodeficiency virus (HIV) infected community. However, there is scarcity of data about the prevalence of MRSA among HIV positive pediatric patients in the study area. Objectives: To determine the prevalence and types of MRSA among S. aureus isolates of HIV positive pediatric patients in the Amhara National Regional State, Northwest Ethiopia. Methods: Pediatric patients who attended the clinic from December 2013 to April 2014 were included in the study. Genotype MRSA VER 3.0 was used for characterization of S. aureus isolates. This detected methicillin-resistance-mediating mecA and mecC genes and the bicomponent cytotoxic virulence factor Panton–Valentine leukocidin (PVL). Data were analyzed using SPSS version 20. Results: Among 126 S. aureus isolates, 37.3% and 11.9% were mecA and Panton–Valentine leukocidin gene positive, respectively. Patients of FHRH (P = 0.04) and DRH (P = 0.02) have statistical significance for mecA gene. Panton–Valentine leukocidin gene positive strains were about 97% less likelihood to be mecA gene positive (P = 0.001). Conclusion: A high prevalence of pathogenic MRSA strains among HIV positive pediatric patients was observed. Most of the MRSA types were hospital acquired. Hence, strict hygienic approaches by healthcare workers in hospitals should be implemented. In addition, screening and treatment of MRSA for HIV positive pediatric patients is recommended. [Ethiop. J. Health Dev. 2018;32(3):00-000] Key words: MRSA, pediatrics, HIV, Ethiopia
- Published
- 2018
21. NS1 DNA vaccination protects against Zika infection through T cell–mediated immunity in immunocompetent mice
- Author
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Grubor-Bauk, B., primary, Wijesundara, D. K., additional, Masavuli, M., additional, Abbink, P., additional, Peterson, R. L., additional, Prow, N. A., additional, Larocca, R. A., additional, Mekonnen, Z. A., additional, Shrestha, A., additional, Eyre, N. S., additional, Beard, M. R., additional, Gummow, J., additional, Carr, J., additional, Robertson, S. A., additional, Hayball, J. D., additional, Barouch, D. H., additional, and Gowans, E. J., additional
- Published
- 2019
- Full Text
- View/download PDF
22. Modeling Climate Change Impacts on an Arctic Polygonal Tundra: 2. Changes in CO2 and CH4 Exchange Depend on Rates of Permafrost Thaw as Affected by Changes in Vegetation and Drainage
- Author
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Grant, R. F., primary, Mekonnen, Z. A., additional, Riley, W. J., additional, Arora, B., additional, and Torn, M. S., additional
- Published
- 2019
- Full Text
- View/download PDF
23. Modeling Climate Change Impacts on an Arctic Polygonal Tundra: 1. Rates of Permafrost Thaw Depend on Changes in Vegetation and Drainage
- Author
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Grant, R. F., primary, Mekonnen, Z. A., additional, and Riley, W. J., additional
- Published
- 2019
- Full Text
- View/download PDF
24. Assessment of geomagnetic storm effects over Ethiopian ionosphere by using GPS measurements.
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Mekonnen, Z. Legesse and Endeshaw, T. Lake
- Subjects
MAGNETIC storms ,GLOBAL Positioning System ,IONOSPHERE ,SOLAR wind ,INTERPLANETARY magnetic fields - Abstract
In this paper we have investigated the effects of geomagnetic storm on the variation of interplanetary magnetic field (IMF Bz), disturbance storm time (Dst), solar wind speed and total electron content (TEC) over Ethiopian ionosphere. A total of 17 geomagnetic storms have analysed by using ground based Global Positioning System (GPS) stations at Bahir Dar (11° N, 38° E), Debark(4.32° N, 109.48° E), Armi (3.03° N, 109.29° E), Nazret (8.57° N, 39.29° E), Robe(7.60° N, 40°E), Assosa (1.14° N, 106.16° E), and Ambo(8.59° N, 37.51° E) from the years 2010 to 2013. The results have revealed that there is a mixed effect of geomagnetic storm on the variation of interplanetary magnetic field (IMF Bz), disturbance storm time (Dst), solar wind speed and total electron content (TEC), however, most of the effects were positive and might be attributed to the prompt penetration electric fields (PPEFs) and disturbed dynamo fields. [ABSTRACT FROM AUTHOR]
- Published
- 2020
25. Forecasting the Hydroclimatic Signature of the 2015/16 El Niño Event on the Western United States
- Author
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Landdegradatie en aardobservatie, Landscape functioning, Geocomputation and Hydrology, Wanders, N., Bachas, A., He, X. G., Huang, H., Koppa, A., Mekonnen, Z. T., Pagán, B. R., Peng, L. Q., Vergopolan, N., Wang, K. J., Xiao, M., Zhan, S., Lettenmaier, D.P., Wood, Eric F., Landdegradatie en aardobservatie, Landscape functioning, Geocomputation and Hydrology, Wanders, N., Bachas, A., He, X. G., Huang, H., Koppa, A., Mekonnen, Z. T., Pagán, B. R., Peng, L. Q., Vergopolan, N., Wang, K. J., Xiao, M., Zhan, S., Lettenmaier, D.P., and Wood, Eric F.
- Published
- 2017
26. Mathematical Modelling of Arctic Polygonal Tundra with Ecosys: 1. Microtopography Determines How Active Layer Depths Respond to Changes in Temperature and Precipitation
- Author
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Grant, R. F., primary, Mekonnen, Z. A., additional, Riley, W. J., additional, Wainwright, H. M., additional, Graham, D., additional, and Torn, M. S., additional
- Published
- 2017
- Full Text
- View/download PDF
27. Mathematical Modelling of Arctic Polygonal Tundra with Ecosys: 2. Microtopography Determines How CO2 and CH4 Exchange Responds to Changes in Temperature and Precipitation
- Author
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Grant, R. F., primary, Mekonnen, Z. A., additional, Riley, W. J., additional, Arora, B., additional, and Torn, M. S., additional
- Published
- 2017
- Full Text
- View/download PDF
28. BAMBOO VALUE CHAIN AND ITS LIVELIHOOD CONTRIBUTION IN ETHIOPIA
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Mekonnen Z, Worku A, Yohanes T, and Alebachew M
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- 2015
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29. Modeling Climate Change Impacts on an Arctic Polygonal Tundra: 2. Changes in CO2 and CH4 Exchange Depend on Rates of Permafrost Thaw as Affected by Changes in Vegetation and Drainage.
- Author
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Grant, R. F., Mekonnen, Z. A., Riley, W. J., Arora, B., and Torn, M. S.
- Subjects
CLIMATE change ,TUNDRAS ,CARBON dioxide ,METHANE ,PERMAFROST ,THAWING ,PLANTS ,DRAINAGE - Abstract
Model projections of future CO
2 and CH4 exchange in Arctic tundra diverge widely. Here we used ecosys to examine how climate change will affect CO2 and CH4 exchange in troughs, rims, and centers of a coastal polygonal tundra landscape at Barrow, AK. The model was shown to simulate diurnal and seasonal variation in CO2 and CH4 fluxes associated with those in air and soil temperatures (Ta and Ts) and soil water contents (θ) under current climate in 2014 and 2015. During RCP 8.5 climate change from 2015 to 2085, rising Ta, atmospheric CO2 concentrations (Ca), and precipitation (P) increased net primary productivity (NPP) from 50-150 g C m-2 y-1 , consistent with current biometric estimates, to 200--250 g C m-2 y-1 . Concurrent increases in heterotrophic respiration (Rh) were slightly smaller, so that net CO2 exchange rose from values of -25 (net emission) to +50 (net uptake) g C m-2 y-1 to ones of -10 to +65 g C m-2 y-1 . Increases in net CO2 uptake were largely offset by increases in CH4 emissions from 0-6 to 1-20 g C m-2 y-1 , reducing gains in net ecosystem productivity. These increases in net CO2 uptake and CH4 emissions were modeled with hydrological boundary conditions that were assumed not to change with climate. Both these increases were smaller if boundary conditions were gradually altered to increase landscape drainage during model runs with climate change. [ABSTRACT FROM AUTHOR]- Published
- 2019
- Full Text
- View/download PDF
30. Occurrence of extended spectrum beta (β)-lactamases in multi-drug resistant Escherichia coli isolated from a clinical setting in Jimma University Specialized Hospital, Jimma, southwest Ethiopia
- Author
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Mulualem, Y, Kasa, T, Mekonnen, Z, and Suleman, S
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Antibiotics, Multi-drug resistance, Extended Spectrum Beta-Lactamase, Jimma University Specialized Hospital, Ethiopia - Abstract
Introduction: Resistance to antibiotics has grave consequences leading to treatment failure and increased health care costs. This public health risk has become a global problem with some countries like Ethiopia seriously affected. Members of the family enterobacteriaceae, including E. coli, are among the most important human pathogens accounting for the majority of bacterial strains isolated from clinical patient samples. Moreover, there is insufficient data regarding Extended-spectrum Beta-lactamase (ESBL) prevalence among Escherichia coli strains from Ethiopia. Thus, the objective was to determine the production of ESBL among clinical isolates and assess the in vitro susceptibility of the E.coli to the routinely used selected antibiotics.Methods: We collected a total of 359 clinical specimens (56 urine, 116 sputum, 72 stool and 15 wound swabs) from in- and outpatients at Jimma University Specialised Hospital, Jimma zone, southwest Ethiopia.Results: E. coli was isolated from 67 (18.66%) clinical specimens, of which 24 (36%) isolates were ESBL producers. The resistance pattern to the tested antibiotics was: penicillin (97%), amoxacillin and ampicillin (86.6% each), tetracycline (73.1%), amoxacillinclavulanate (70.1%), co-trimoxazole (56.7%), chloramphenicol (35.8%), ciprofloxacine (20.9%), norfloxacine (16.4%), cefotaxime (9%), ceftazidime (6%), gentamicin (3%). All the isolates tested showed resistance to two or more drugs, and were considered to be multi-drug resistant.Conclusion: A higher rate (46%) of ESBL production and multi-drug resistance was seen among isolates from inpatients as compared to outpatients (33%) at the hospital.Key words: Antibiotics, Multi-drug resistance, Extended Spectrum Beta-Lactamase, Jimma University Specialized Hospital, Ethiopia
- Published
- 2014
31. Modeling Climate Change Impacts on an Arctic Polygonal Tundra: 2. Changes in CO2and CH4Exchange Depend on Rates of Permafrost Thaw as Affected by Changes in Vegetation and Drainage
- Author
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Grant, R. F., Mekonnen, Z. A., Riley, W. J., Arora, B., and Torn, M. S.
- Abstract
Model projections of future CO2and CH4exchange in Arctic tundra diverge widely. Here we used ecosysto examine how climate change will affect CO2and CH4exchange in troughs, rims, and centers of a coastal polygonal tundra landscape at Barrow, AK. The model was shown to simulate diurnal and seasonal variation in CO2and CH4fluxes associated with those in air and soil temperatures (Taand Ts) and soil water contents (θ) under current climate in 2014 and 2015. During RCP 8.5 climate change from 2015 to 2085, rising Ta, atmospheric CO2concentrations (Ca), and precipitation (P) increased net primary productivity (NPP) from 50–150 g C m-2y-1, consistent with current biometric estimates, to 200–250 g C m−2y−1. Concurrent increases in heterotrophic respiration (Rh) were slightly smaller, so that net CO2exchange rose from values of −25 (net emission) to +50 (net uptake) g C m−2y−1to ones of −10 to +65 g C m−2y−1. Increases in net CO2uptake were largely offset by increases in CH4emissions from 0–6 to 1–20 g C m−2y−1, reducing gains in net ecosystem productivity. These increases in net CO2uptake and CH4emissions were modeled with hydrological boundary conditions that were assumed not to change with climate. Both these increases were smaller if boundary conditions were gradually altered to increase landscape drainage during model runs with climate change. Permafrost thaw with climate change will raise NPP and Rhsimilarly in a coastal tundraPermafrost thaw with climate change will substantially raise CH4emissions in a coastal tundraThese increases in CH4emissions will be smaller if drainage increases with climate change
- Published
- 2019
- Full Text
- View/download PDF
32. The impact of baseline faecal egg counts on the efficacy of single-dose albendazole against Trichuris trichiura
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Levecke, B., Mekonnen, Z., Albonico, M., and Vercruysse, J.
- Published
- 2012
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33. Assessment of Anthelmintic Efficacy of Mebendazole in School Children in Six Countries Where Soil-Transmitted Helminths Are Endemic
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Olliaro, PL, Levecke, B, Montresor, A, Albonico, M, Ame, SM, Behnke, JM, Bethony, JM, Noumedem, CD, Engels, D, Guillard, B, Kotze, AC, Krolewiecki, AJ, McCarthy, JS, Mekonnen, Z, Periago, MV, Sopheak, H, Tchuem-Tchuente, L-A, Tran, TD, Nguyen, TH, Zeynudin, A, Vercruysse, J, Olliaro, PL, Levecke, B, Montresor, A, Albonico, M, Ame, SM, Behnke, JM, Bethony, JM, Noumedem, CD, Engels, D, Guillard, B, Kotze, AC, Krolewiecki, AJ, McCarthy, JS, Mekonnen, Z, Periago, MV, Sopheak, H, Tchuem-Tchuente, L-A, Tran, TD, Nguyen, TH, Zeynudin, A, and Vercruysse, J
- Abstract
BACKGROUND: Robust reference values for fecal egg count reduction (FECR) rates of the most widely used anthelmintic drugs in preventive chemotherapy (PC) programs for controlling soil-transmitted helminths (STHs; Ascaris lumbricoides, Trichuris trichiura, and hookworm) are still lacking. However, they are urgently needed to ensure detection of reduced efficacies that are predicted to occur due to growing drug pressure. Here, using a standardized methodology, we assessed the FECR rate of a single oral dose of mebendazole (MEB; 500 mg) against STHs in six trials in school children in different locations around the world. Our results are compared with those previously obtained for similarly conducted trials of a single oral dose of albendazole (ALB; 400 mg). METHODOLOGY: The efficacy of MEB, as assessed by FECR, was determined in six trials involving 5,830 school children in Brazil, Cambodia, Cameroon, Ethiopia, United Republic of Tanzania, and Vietnam. The efficacy of MEB was compared to that of ALB as previously assessed in 8,841 school children in India and all the above-mentioned study sites, using identical methodologies. PRINCIPAL FINDINGS: The estimated FECR rate [95% confidence interval] of MEB was highest for A. lumbricoides (97.6% [95.8; 99.5]), followed by hookworm (79.6% [71.0; 88.3]). For T. trichiura, the estimated FECR rate was 63.1% [51.6; 74.6]. Compared to MEB, ALB was significantly more efficacious against hookworm (96.2% [91.1; 100], p<0.001) and only marginally, although significantly, better against A. lumbricoides infections (99.9% [99.0; 100], p = 0.012), but equally efficacious for T. trichiura infections (64.5% [44.4; 84.7], p = 0.906). CONCLUSIONS/SIGNIFICANCE: A minimum FECR rate of 95% for A. lumbricoides, 70% for hookworm, and 50% for T. trichiura is expected in MEB-dependent PC programs. Lower FECR results may indicate the development of potential drug resistance.
- Published
- 2014
34. Mathematical Modelling of Arctic Polygonal Tundra with <italic>Ecosys</italic>: 1. Microtopography Determines How Active Layer Depths Respond to Changes in Temperature and Precipitation.
- Author
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Grant, R. F., Mekonnen, Z. A., Riley, W. J., Wainwright, H. M., Graham, D., and Torn, M. S.
- Abstract
Abstract: Microtopographic variation that develops among features (troughs, rims, and centers) within polygonal landforms of coastal arctic tundra strongly affects movement of surface water and snow and thereby affects soil water contents (θ) and active layer depth (ALD). Spatial variation in ALD among these features may exceed interannual variation in ALD caused by changes in climate and so needs to be represented in projections of changes in arctic ALD. In this study, increases in near‐surface θ with decreasing surface elevation among polygon features at the Barrow Experimental Observatory (BEO) were modeled from topographic effects on redistribution of surface water and snow and from lateral water exchange with a subsurface water table during a model run from 1981 to 2015. These increases in θ caused increases in thermal conductivity that in turn caused increases in soil heat fluxes and hence in ALD of up to 15 cm with lower versus higher surface elevation which were consistent with increases measured at BEO. The modeled effects of θ caused interannual variation in maximum ALD that compared well with measurements from 1985 to 2015 at the Barrow Circumpolar Active Layer Monitoring (CALM) site (R
2 = 0.61, RMSE = 0.03 m). For higher polygon features, interannual variation in ALD was more closely associated with annual precipitation than mean annual temperature, indicating that soil wetting from increases in precipitation may hasten permafrost degradation beyond that caused by soil warming from increases in air temperature. This degradation may be more rapid if increases in precipitation cause sustained wetting in higher features. [ABSTRACT FROM AUTHOR]- Published
- 2017
- Full Text
- View/download PDF
35. Mathematical Modelling of Arctic Polygonal Tundra with <italic>Ecosys:</italic> 2. Microtopography Determines How CO2 and CH4 Exchange Responds to Changes in Temperature and Precipitation.
- Author
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Grant, R. F., Mekonnen, Z. A., Riley, W. J., Arora, B., and Torn, M. S.
- Abstract
Abstract: Differences of surface elevation in arctic polygonal landforms cause spatial variation in soil water contents (θ), active layer depths (ALD), and thereby in CO
2 and CH4 exchange. Here we test hypotheses in ecosys for topographic controls on CO2 and CH4 exchange in trough, rim, and center features of low‐ and flat‐centered polygons (LCP and FCP) against chamber and eddy covariance (EC) measurements during 2013 at Barrow, Alaska. Larger CO2 influxes and CH4 effluxes were measured with chambers and modeled with ecosys in LCPs than in FCPs and in lower features (troughs) than in higher (rims) within LCPs and FCPs. Spatially aggregated CO2 and CH4 fluxes from ecosys were significantly correlated with EC flux measurements. Lower features were modeled as C sinks (52–56 g C m−2 yr−1 ) and CH4 sources (4–6 g C m−2 yr−1 ), and higher features as near C neutral (−2–15 g C m−2 yr−1 ) and CH4 neutral (0.0–0.1 g C m−2 yr−1 ). Much of the spatial and temporal variations in CO2 and CH4 fluxes were modeled from topographic effects on water and snow movement and thereby on θ, ALD, and soil O2 concentrations. Model results forced with meteorological data from 1981 to 2015 indicated increasing net primary productivity in higher features and CH4 emissions in some lower and higher features since 2008, attributed mostly to recent rises in precipitation. Small‐scale variation in surface elevation causes large spatial variation of greenhouse gas (GHG) exchanges and therefore should be considered in estimates of GHG exchange in polygonal landscapes. [ABSTRACT FROM AUTHOR]- Published
- 2017
- Full Text
- View/download PDF
36. Prevalence and intensity of soil-transmitted helminth infections among pre-school age children in 12 kindergartens in Jimma Town, southwest Ethiopia
- Author
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Dana, D., primary, Mekonnen, Z., additional, Emana, D., additional, Ayana, M., additional, Getachew, M., additional, Workneh, N., additional, Vercruysse, J., additional, and Levecke, B., additional
- Published
- 2014
- Full Text
- View/download PDF
37. Assessment of the Anthelmintic Efficacy of Albendazole in School Children in Seven Countries Where Soil-Transmitted Helminths Are Endemic
- Author
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Brooker, S, Vercruysse, J, Behnke, JM, Albonico, M, Ame, SM, Angebault, C, Bethony, JM, Engels, D, Guillard, B, Nguyen, TVH, Kang, G, Kattula, D, Kotze, AC, McCarthy, JS, Mekonnen, Z, Montresor, A, Periago, MV, Sumo, L, Tchuente, L-AT, Dang, TCT, Zeynudin, A, Levecke, B, Brooker, S, Vercruysse, J, Behnke, JM, Albonico, M, Ame, SM, Angebault, C, Bethony, JM, Engels, D, Guillard, B, Nguyen, TVH, Kang, G, Kattula, D, Kotze, AC, McCarthy, JS, Mekonnen, Z, Montresor, A, Periago, MV, Sumo, L, Tchuente, L-AT, Dang, TCT, Zeynudin, A, and Levecke, B
- Abstract
BACKGROUND: The three major soil-transmitted helminths (STH) Ascaris lumbricoides, Trichuris trichiura and Necator americanus/Ancylostoma duodenale are among the most widespread parasites worldwide. Despite the global expansion of preventive anthelmintic treatment, standard operating procedures to monitor anthelmintic drug efficacy are lacking. The objective of this study, therefore, was to define the efficacy of a single 400 milligram dose of albendazole (ALB) against these three STH using a standardized protocol. METHODOLOGY/PRINCIPAL FINDINGS: Seven trials were undertaken among school children in Brazil, Cameroon, Cambodia, Ethiopia, India, Tanzania and Vietnam. Efficacy was assessed by the Cure Rate (CR) and the Fecal Egg Count Reduction (FECR) using the McMaster egg counting technique to determine fecal egg counts (FEC). Overall, the highest CRs were observed for A. lumbricoides (98.2%) followed by hookworms (87.8%) and T. trichiura (46.6%). There was considerable variation in the CR for the three parasites across trials (country), by age or the pre-intervention FEC (pre-treatment). The latter is probably the most important as it had a considerable effect on the CR of all three STH. Therapeutic efficacies, as reflected by the FECRs, were very high for A. lumbricoides (99.5%) and hookworms (94.8%) but significantly lower for T. trichiura (50.8%), and were affected to different extents among the 3 species by the pre-intervention FEC counts and trial (country), but not by sex or age. CONCLUSIONS/SIGNIFICANCE: Our findings suggest that a FECR (based on arithmetic means) of >95% for A. lumbricoides and >90% for hookworms should be the expected minimum in all future surveys, and that therapeutic efficacy below this level following a single dose of ALB should be viewed with concern in light of potential drug resistance. A standard threshold for efficacy against T. trichiura has yet to be established, as a single-dose of ALB is unlikely to be satisfactory for this para
- Published
- 2011
38. Soil Transmitted Helminths and Associated Factors among Schoolchildren in Government and Private Primary School in Jimma Town, Southwest Ethiopia
- Author
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Debalke, S, additional, Worku, A, additional, Jahur, N, additional, and Mekonnen, Z, additional
- Published
- 2013
- Full Text
- View/download PDF
39. Efficacy of different albendazole and mebendazole regimens against heavy-intensityTrichuris trichiurainfections in school children, Jimma Town, Ethiopia
- Author
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Mekonnen, Z, primary, Levecke, B, additional, Boulet, G, additional, Bogers, J-P, additional, and Vercruysse, J, additional
- Published
- 2013
- Full Text
- View/download PDF
40. The role and management of Eucalyptus in Lode Hetosa district, central Ethiopia
- Author
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Mekonnen, Z, Kassa, H, Lemenh, M, Campbell, B, Mekonnen, Z, Kassa, H, Lemenh, M, and Campbell, B
- Abstract
The growing demand for construction and fuel wood and the wide adaptation of Eucalyptus to the different agro-ecological zones of the country are resulting in increased plantation of Eucalyptus by smallholders, but the policy environment in Ethiopia discourages farmers from planting this exotic. While rural and urban households supported the planting of Eucalyptus, district level politicians opposed its planting, and researchers had reservations about it. The opposition of the politicians appears to be founded on fears of damage to the ecosystem. This study was conducted to examine the contribution of Eucalyptus to meeting wood and cash needs of rural households, onfarm management of Eucalyptus, and the perception of stakeholders in Central Ethiopia about this tree. Of tree species, Eucalyptus was ranked first by farmers, indicating conflicts between policy makers and local communities over market needs for Eucalyptus wood. A market survey showed that 74% of firewood sold in the district capital was Eucalyptus. The tree generated a quarter of annual cash incomes of rural households, and contributed significantly to subsistence. Almost half of the farmers had overstocked their Eucalyptus woodlots, indicating that plantation management needs improving. The study shows that Eucalyptus plays an important role in the livelihoods of smallholders, and that attempts to discourage Eucalyptus, in the absence of viable alternatives, will worsen wood scarcity in the Ethiopian highlands.
- Published
- 2007
41. Mathematical Modelling of Arctic Polygonal Tundra with Ecosys:2. Microtopography Determines How CO2and CH4Exchange Responds to Changes in Temperature and Precipitation
- Author
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Grant, R. F., Mekonnen, Z. A., Riley, W. J., Arora, B., and Torn, M. S.
- Abstract
Differences of surface elevation in arctic polygonal landforms cause spatial variation in soil water contents (θ), active layer depths (ALD), and thereby in CO2and CH4exchange. Here we test hypotheses in ecosysfor topographic controls on CO2and CH4exchange in trough, rim, and center features of low‐ and flat‐centered polygons (LCP and FCP) against chamber and eddy covariance (EC) measurements during 2013 at Barrow, Alaska. Larger CO2influxes and CH4effluxes were measured with chambers and modeled with ecosysin LCPs than in FCPs and in lower features (troughs) than in higher (rims) within LCPs and FCPs. Spatially aggregated CO2and CH4fluxes from ecosyswere significantly correlated with EC flux measurements. Lower features were modeled as C sinks (52–56 g C m−2yr−1) and CH4sources (4–6 g C m−2yr−1), and higher features as near C neutral (−2–15 g C m−2yr−1) and CH4neutral (0.0–0.1 g C m−2yr−1). Much of the spatial and temporal variations in CO2and CH4fluxes were modeled from topographic effects on water and snow movement and thereby on θ, ALD, and soil O2concentrations. Model results forced with meteorological data from 1981 to 2015 indicated increasing net primary productivity in higher features and CH4emissions in some lower and higher features since 2008, attributed mostly to recent rises in precipitation. Small‐scale variation in surface elevation causes large spatial variation of greenhouse gas (GHG) exchanges and therefore should be considered in estimates of GHG exchange in polygonal landscapes. Topographic effects on CO2fluxes caused lower features to be net C sinks and higher features to be near C neutralTopographic effects on CH4fluxes caused lower features to be larger CH4sources and higher features to be smaller CH4sourcesMuch of spatial and temporal variations in CO2and CH4fluxes were attributed in the model to topographic effects of water and snow movement
- Published
- 2017
- Full Text
- View/download PDF
42. Health impacts of bedbug infestation: A case of five towns in Amhara Region, Ethiopia
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Mekonnen, D., Zenebe, Y., Derbie, A., Adem, Y., Hailu, D., Mulu, W., Bereded, F., Mekonnen, Z., Yizengaw, E., Begna Tulu, Biadglegne, F., Mihret, A., and Sack, U.
- Subjects
Bedbug infestation, Ethiopia - Abstract
Background: Bedbug is a wingless human blood-sucking bug that generally infests houses and beds. Bedbug infestation is prevalent across the country. Despite its prevalence, however, there is scarce information on the epidemiological, psychological, social and public health impacts of the infestation. This lack may arise from the absence of sufficient research in the area. The impetus for this study arose from this recognition. This study therefore assessed the extent of bedbug infestation in five towns in Amhara Regional State, Ethiopia, and its impact on public health in the areas considered in this study.Methods: A community-based cross sectional study was conducted in five towns of Amhara Regional State from 1 March 2015 to 30 June 2016. Bedbug inspection was done following the Michigan manual for prevention and control of bedbug recommendation. The presence of a living or dead bedbugs, their eggs, their skin discarded in shedding, and their fecal stains or droppings were taken as an infestation. In addition, data from households were collected using pretested, structured and interviewer-administered questionnaire. The data were analyzed using SPSS version 20. Both bivariate and multivariate logistic regressions were computed to identify associated factors.Results: From the 203 residential institutions surveyed, evidence of prevalence of bedbugs was located in 75.9% (154) houses. From among the infested residents, 87%, 83.1%, and 71.4% had faced one or more psychological, social and health impacts, respectively. Residential institutions in Bahir Dar town administration were 3.4 times more likely to be infested by bedbug than those in Amanuel town (AOR: 3.4; 95% CI: 1-11). The chances that residents of Kobo town administration had to be infested by bedbug were 41 times more than that of the residents in Amanuel town (AOR: 41; 95%CI: 8-206). However, no statistically significant difference was observed between the rates of bedbug infestation and the type of residential institutions.Conclusions: Bedbug infestation was found to be a major public health problem in Bahir Dar, Woreta and Kobo towns. A significant psychological, social and health impact was observed in the communities. Thus, aggressive public health promotion campaigns against bedbug are recommended to empower the communities and equip them with preventive strategies. Moreover, an effective pest management strategy also needs to be made a priority health agenda, in the particular areas of study. A larger study is recommended to assess more in-depth impacts of bedbug infestation on public health [Ethiop. J. Health Dev. 2017;31(4):251-258]Keywords: Bedbug infestation, Ethiopia
43. Occurrence of extended spectrum beta (b)-lactamases in multi-drug resistant Escherichia coli isolated from a clinical setting in Jimma University Specialized Hospital, Jimma, southwest Ethiopia
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Mulualem, Y., Kasa, T., Mekonnen, Z., and Sultan Suleman
44. Identifying thresholds for classifying moderate-to-heavy soil-transmitted helminth intensity infections for FECPAKG2, McMaster, Mini-FLOTAC and qPCR
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Simone A. Pinto, Nguyen Thi Viet Hoa, Maria Paola Maurelli, Rodrigo Corrêa Oliveira, Jozef Vercruysse, Louis-Albert Tchuem-Tchuenté, Antonio Montresor, Jerzy M. Behnke, Andrew C. Kotze, Johnny Vlaminck, Zeleke Mekonnen, Bruno Levecke, Deepthi Kattula, Piet Cools, Shaali Ame, Giuseppe Cringoli, Eurion Thomas, Laura Rinaldi, Maria Victoria Periago, Daniel Dana, Jaco J. Verweij, Jeffrey M. Bethony, Somphou Sayasone, Dang Thi Cam Thach, Laurentine Sumo, Leonardo Ferreira Matoso, Greg Mirams, James S. McCarthy, Jennifer Keiser, Gagandeep Kang, Bertrand Guillard, Mio Ayana, Ahmed Zeynudin, Cécile Angebault, Marco Albonico, Levecke, B., Cools, P., Albonico, M., Ame, S., Angebault, C., Ayana, M., Behnke, J. M., Bethony, J. M., Cringoli, G., Dana, D., Guillard, B., Hoa, N. T. V., Kang, G., Kattula, D., Keiser, J., Kotze, A. C., Matoso, L. F., Maurelli, M. P., Mccarthy, J. S., Mekonnen, Z., Mirams, G., Montresor, A., Oliveira, R. C., Periagoid, M. V., Pinto, S. A., Rinaldi, L., Sayasone, S., Sumo, L., Tchuem-Tchuente, L. -A., Thach, D. T. C., Thomas, E., Zeynudin, A., Verweij, J. J., Vlaminck, J., and Vercruysse, J.
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0301 basic medicine ,Veterinary medicine ,Trichuris ,Nematoda ,Physiology ,Eggs ,RC955-962 ,Helminthiasis ,Global Health ,Soil ,0302 clinical medicine ,Medical Conditions ,Reproductive Physiology ,Arctic medicine. Tropical medicine ,Medicine and Health Sciences ,Public and Occupational Health ,Microscopy ,biology ,Ascaris ,Eukaryota ,Infectious Diseases ,Soil transmitted helminthiases ,PCR ,Helminth Infections ,TESTS ,Public aspects of medicine ,RA1-1270 ,Human ,Research Article ,Neglected Tropical Diseases ,Helminth infections ,030231 tropical medicine ,DIAGNOSIS ,Real-Time Polymerase Chain Reaction ,World Health Organization ,World health ,03 medical and health sciences ,Diagnostic Medicine ,Helminths ,parasitic diseases ,Parasitic Diseases ,Humans ,Animals ,Veterinary Sciences ,Helminthiasi ,Public Health, Environmental and Occupational Health ,Organisms ,Biology and Life Sciences ,biology.organism_classification ,Tropical Diseases ,Invertebrates ,Intensity (physics) ,030104 developmental biology ,Soil-transmitted helminth ,Soil-Transmitted Helminthiases ,Hookworms ,Trichuris Infections ,Zoology - Abstract
The World Health Organization (WHO) has defined moderate-to-heavy intensity (M&HI) infections with soil-transmitted helminths (Ascaris lumbricoides, Trichuris trichiura and the two hookworms, Ancylostoma duodenale and Necator americanus) based on specific values of eggs per gram of stool, as measured by the Kato-Katz method. There are a variety of novel microscopy and DNA-based methods but it remains unclear whether applying current WHO thresholds on to these methods allows for a reliable classification of M&HI infections. We evaluated both WHO and method-specific thresholds for classifying the M&HI infections for novel microscopic (FECPAKG2, McMaster and Mini-FLOTAC) and DNA-based (qPCR) diagnostic methods. For this, we determined method-specific thresholds that best classified M&HI infections (defined by Kato-Katz and WHO thresholds; reference method) in two multi-country drug efficacy studies. Subsequently, we verified whether applying these method-specific thresholds improved the agreement in classifying M&HI infections compared to the reference method. When we applied the WHO thresholds, the new microscopic methods mainly misclassified M&HI as low intensity, and to a lesser extent low intensity infection as M&HI. For FECPAKG2, applying the method-specific thresholds significantly improved the agreement for Ascaris (moderate → substantial), Trichuris and hookworms (fair → moderate). For Mini-FLOTAC, a significantly improved agreement was observed for hookworms only (fair → moderate). For the other STHs, the agreement was almost perfect and remained unchanged. For McMaster, the method-specific thresholds revealed a fair to a substantial agreement but did not significantly improve the agreement. For qPCR, the method-specific thresholds based on genome equivalents per ml of DNA moderately agreed with the reference method for hookworm and Trichuris infections. For Ascaris, there was a substantial agreement. We defined method-specific thresholds that improved the classification of M&HI infections. Validation studies are required before they can be recommended for general use in assessing M&HI infections in programmatic settings., Author summary The prevalence of moderate-to-heavy intensity (M&HI) infections is a key indicator for measuring the success of large-scale deworming programs for intestinal worms because they account for the majority of the worm-attributable morbidity. Currently, intestinal worm infections are classified as M&HI when the number of worm eggs that are microscopically detected in stool using a standard diagnostic method exceeds a threshold set by the World Health Organization. Over the years, a variety of new promising diagnostic methods have been introduced for the diagnosis of intestinal worms. Although they have some important advantages over the current standard method, it is not clear whether they can reliably classify M&HI infections. This is because their test results either systematically indicate lower egg counts or are expressed in a unit other than eggs per gram of stool (e.g, concentration of worm DNA), warranting the need for method-specific thresholds. We defined method-specific thresholds and verified whether they increased the correct classification of M&HI infections. Overall, our results indicate that method-specific thresholds improved the classification of M&HI infections, but that further validation is required before they can be recommended for evaluating the occurrence M&HI infections in large-scale deworming programs.
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45. Therapeutic efficacy of albendazole against soil-transmitted helminthiasis in children measured by five diagnostic methods
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Zeleke Mekonnen, Greg Mirams, Jennifer Keiser, Jozef Vercruysse, Jaco J. Verweij, Rodrigo Correa-Oliveira, Shaali Ame, Maria Paola Maurelli, Mio Ayana, Antonio Montresor, Somphou Sayasone, Daniel Dana, Leonardo Ferreira Matoso, Laura Rinaldi, Simone A. Pinto, Marco Albonico, Johnny Vlaminck, Bruno Levecke, Piet Cools, Giuseppe Cringoli, Eurion Thomas, Vlaminck, J., Cools, P., Albonico, M., Ame, S., Ayana, M., Cringoli, G., Salameh, Dana, Keiser, J., Maurelli, M. P., Matoso, L. F., Montresor, A., Mekonnen, Z., Mirams, G., Correa-Oliveira, R., Pinto, S. A., Rinaldi, L., Sayasone, S., Thomas, E., Vercruysse, J., Verweij, J. J., and Levecke, B.
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Male ,0301 basic medicine ,Ascaris Lumbricoides ,Nematoda ,RC955-962 ,Helminthiasis ,NECATOR-AMERICANUS ,Administration, Oral ,Tanzania ,Geographical Locations ,Efficacy ,Feces ,Soil ,0302 clinical medicine ,Tubulin ,ANCYLOSTOMA-DUODENALE ,Arctic medicine. Tropical medicine ,Medicine and Health Sciences ,Anthelmintic ,REAL-TIME PCR ,Child ,Eggs per gram ,media_common ,Anthelmintics ,biology ,Pharmaceutics ,Ascaris ,Eukaryota ,Soil-transmitted helminthiasis ,Infectious Diseases ,Helminth Infections ,Laos ,INFECTIONS ,Female ,Public aspects of medicine ,RA1-1270 ,Ascaris lumbricoides ,Brazil ,Research Article ,Neglected Tropical Diseases ,medicine.drug ,Drug ,medicine.medical_specialty ,Drug Administration ,Drug Research and Development ,media_common.quotation_subject ,030231 tropical medicine ,GASTROINTESTINAL STRONGYLE ,BENZIMIDAZOLE RESISTANCE ,Albendazole ,World Health Organization ,Sensitivity and Specificity ,Necator americanus ,03 medical and health sciences ,Drug Therapy ,Helminths ,Internal medicine ,parasitic diseases ,Parasitic Diseases ,medicine ,Animals ,Humans ,MINI-FLOTAC ,Drug Efficacy Evaluation ,Parasite Egg Count ,Pharmacology ,Diagnostic Tests, Routine ,business.industry ,Organisms ,Public Health, Environmental and Occupational Health ,Biology and Life Sciences ,Tropical Diseases ,medicine.disease ,biology.organism_classification ,Invertebrates ,FECAL SAMPLES ,030104 developmental biology ,Soil-Transmitted Helminthiases ,Hookworms ,ANTHELMINTIC DRUG EFFICACY ,People and Places ,Africa ,Ethiopia ,EGG COUNTS ,business ,Soil-transmitted helminths, Preventive chemotherapy, benzimidazole drugs, Mini-FLOTAC, Kato-Katz, McMaster, qPCR - Abstract
Background Preventive chemotherapy (PC) with benzimidazole drugs is the backbone of soil-transmitted helminth (STH) control programs. Over the past decade, drug coverage has increased and with it, the possibility of developing anthelmintic resistance. It is therefore of utmost importance to monitor drug efficacy. Currently, a variety of novel diagnostic methods are available, but it remains unclear whether they can be used to monitor drug efficacy. In this study, we compared the efficacy of albendazole (ALB) measured by different diagnostic methods in a head-to-head comparison to the recommended single Kato-Katz. Methods An ALB efficacy trial was performed in 3 different STH-endemic countries (Ethiopia, Lao PDR and Tanzania), each with a different PC-history. During these trials, stool samples were evaluated with Kato-Katz (single and duplicate), Mini-FLOTAC, FECPAKG2, and qPCR. The reduction rate in mean eggs per gram of stool (ERR) and mean genome equivalents / ml of DNA extract (GERR) were calculated to estimate drug efficacy. Principal findings and conclusions The results of the efficacy trials showed that none of the evaluated diagnostic methods could provide reduction rates that were equivalent to a single Kato-Katz for all STH. However, despite differences in clinical sensitivity and egg counts, they agreed in classifying efficacy according to World Health Organization (WHO) guidelines. This demonstrates that diagnostic methods for assessing drug efficacy should be validated with their intended-use in mind and that other factors like user-friendliness and costs will likely be important factors in driving the choice of diagnostics. In addition, ALB efficacy against STH infections was lower in sites with a longer history of PC. Yet, further research is needed to identify factors that contribute to this finding and to verify whether reduced efficacy can be associated with mutations in the β-tubulin gene that have previously been linked to anthelmintic resistance. Trial registration ClinicalTrials.gov NCT03465488., Author summary During the last decade, the scale of deworming programs that aim to eliminate the morbidity caused by intestinal worms has increased to a level that is unprecedented in history. It is therefore of utmost importance to monitor any change in therapeutic efficacy that may arise from emerging drug resistance. Currently, a variety of novel methods have been described, but it remains unclear whether they can be used for monitoring drug efficacy. We applied different diagnostic methods to measure the efficacy of a commonly administered drug in deworming programs in 3 countries with different historical exposure to deworming programs. Compared to the standard diagnostic method, all diagnostic methods revealed good agreement in classifying the therapeutic efficacy according to World Health Organization guidelines, despite clear differences in diagnostic performance. We also noticed that the drug efficacy was lower in countries where drug pressure has been high. However, more research is necessary to identify factors that explain this variation in drug efficacy, including but not limited to the frequency in mutations in genes that are known to be linked with anthelmintic resistance.
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46. Diagnostic performance of a single and duplicate Kato-Katz, Mini-FLOTAC, FECPAKG2 and qPCR for the detection and quantification of soil-transmitted helminths in three endemic countries
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Zeleke Mekonnen, Eurion Thomas, Bruno Levecke, Laura Rinaldi, Leonardo Ferreira Matoso, Greg Mirams, Jozef Vercruysse, Johnny Vlaminck, Mio Ayana, Daniel Dana, Somphou Sayasone, Rodrigo Correa-Oliveira, Jennifer Keiser, Jaco J. Verweij, Barrios Perez José Antonio, Piet Cools, Giuseppe Cringoli, C. Maya, Maria Paola Maurelli, Shaali Ame, Simone A. Pinto, Marco Albonico, Antonio Montresor, Cools, P., Vlaminck, J., Albonico, M., Ame, S., Ayana, M., Jose Antonio, B. P., Cringoli, G., Salameh, Dana, Keiser, J., Maurelli, M. P., Luongo, Maya, Matoso, L. F., Montresor, Marina, Mekonnen, Z., Mirams, G., Correa-Oliveira, R., Pinto, S. A., Rinaldi, L., Sayasone, S., Thomas, E., Verweij, J. J., Vercruysse, J., and Levecke, B.
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Male ,Ascaris Lumbricoides ,Veterinary medicine ,Nematoda ,MULTI-PARALLEL ,ACCURACY ,RC955-962 ,NECATOR-AMERICANUS ,Helminthiasis ,Tanzania ,STRONGYLOIDES-STERCORALIS ,Deworming ,Feces ,Soil ,fluids and secretions ,Arctic medicine. Tropical medicine ,Prevalence ,Medicine and Health Sciences ,Medicine ,REAL-TIME PCR ,Child ,DNA extraction ,INTESTINAL PARASITES ,Microscopy ,Ascaris ,Dna concentration ,Eukaryota ,Trichuris ,Infectious Diseases ,Soil transmitted helminthiases ,Molecular Diagnostic Techniques ,INFECTIONS ,Laos ,Helminth Infections ,TESTS ,Kato katz ,Female ,Public aspects of medicine ,RA1-1270 ,Brazil ,Research Article ,Neglected Tropical Diseases ,Diagnostic methods ,Adolescent ,Real-Time Polymerase Chain Reaction ,World Health Organization ,Sensitivity and Specificity ,Extraction techniques ,Diagnostic Medicine ,HOOKWORM ,Helminths ,parasitic diseases ,Parasitic Diseases ,Animals ,Humans ,Trial registration ,Parasite Egg Count ,Diagnostic Tests, Routine ,business.industry ,Organisms ,Public Health, Environmental and Occupational Health ,Biology and Life Sciences ,Tropical Diseases ,Invertebrates ,Research and analysis methods ,Soil-Transmitted Helminthiases ,Hookworms ,Ethiopia ,business - Abstract
Background Because the success of deworming programs targeting soil-transmitted helminths (STHs) is evaluated through the periodically assessment of prevalence and infection intensities, the use of the correct diagnostic method is of utmost importance. The STH community has recently published for each phase of a deworming program the minimal criteria that a potential diagnostic method needs to meet, the so-called target product profiles (TPPs). Methodology We compared the diagnostic performance of a single Kato-Katz (reference method) with that of other microscopy-based methods (duplicate Kato-Katz, Mini-FLOTAC and FECPAKG2) and one DNA-based method (qPCR) for the detection and quantification of STH infections in three drug efficacy trials in Ethiopia, Lao PDR, and Tanzania. Furthermore, we evaluated a selection of minimal diagnostic criteria of the TPPs. Principal findings All diagnostic methods showed a clinical sensitivity of ≥90% for all STH infections of moderate-to-heavy intensities. For infections of very low intensity, only qPCR resulted in a sensitivity that was superior to a single Kato-Katz for all STHs. Compared to the reference method, both Mini-FLOTAC and FECPAKG2 resulted in significantly lower fecal egg counts for some STHs, leading to a substantial underestimation of the infection intensity. For qPCR, there was a positive significant correlation between the egg counts of a single Kato-Katz and the DNA concentration. Conclusions/Significance Our results indicate that the diagnostic performance of a single Kato-Katz is underestimated by the community and that diagnostic specific thresholds to classify intensity of infection are warranted for Mini-FLOTAC, FECPAKG2 and qPCR. When we strictly apply the TPPs, Kato-Katz is the only microscopy-based method that meets the minimal diagnostic criteria for application in the planning, monitoring and evaluation phase of an STH program. qPCR is the only method that could be considered in the phase that aims to seek confirmation for cessation of program. Trial registration ClinicalTrials.gov NCT03465488, Author summary To control the burden caused by intestinal worms, the World Health Organization recommends large-scale deworming programs where anti-worm drugs are administered to at-risk populations. The decision to scale down drug distribution is based on the periodically assessment of prevalence and intensity of infections using a standard diagnostic method. Today, the scientific community strongly doubts whether this method can be used throughout the program. This is in particular when it fails to detect infections of low intensity, and hence may result in prematurely stopping the distribution of drugs. We compared the diagnostic performance of alternative diagnostic methods in three drug efficacy trials in two African and one Asian country. The diagnostic methods were based on demonstration of worm eggs or worm DNA in stool. We also checked the results with minimal diagnostic criteria which have been recently been proposed by the scientific community. Our results indicate that of all diagnostic methods based on demonstration of worm eggs, only the current standard method fulfills the diagnostic criteria for planning, monitoring and evaluation phases of deworming program. Furthermore, we showed that DNA-based methods could be considered in the phase that aims to seek confirmation for cessation of the deworming program.
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