182 results on '"Melo, Manuel N."'
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2. Xport-A functions as a chaperone by stabilizing the first five transmembrane domains of rhodopsin-1
3. Activity modulation of the Escherichia coli F1FO ATP synthase by a designed antimicrobial peptide via cardiolipin sequestering
4. Room for improvement in the initial martini 3 parameterization of peptide interactions
5. GōMartini 3: From large conformational changes in proteins to environmental bias corrections
6. Charge-dependent interactions of monomeric and filamentous actin with lipid bilaye
7. Coarse-Grain Simulations of Membrane-Adsorbed Helical Peptides
8. A sporulation signature protease is required for assembly of the spore surface layers, germination and host colonization in Clostridioides difficile
9. Rotation of the c‐Ring Promotes the Curvature Sorting of Monomeric ATP Synthases (Adv. Sci. 31/2023)
10. Martini 3 Coarse-Grained Force Field for Cholesterol
11. Acyl-chain saturation regulates the order of phosphatidylinositol 4,5-bisphosphate nanodomains
12. Temperature‐Dependent Re‐alignment of the Short Multifunctional Peptide BP100 in Membranes Revealed by Solid‐State NMR Spectroscopy and Molecular Dynamics Simulations
13. Studies on the Interaction between Model Proteins and Fluorinated Ionic Liquids
14. Ceramides bind VDAC2 to trigger mitochondrial apoptosis
15. SARS-CoV-2 variants impact RBD conformational dynamics and ACE2 accessibility
16. Roadmap of 3D-BioInfo-PT, the BioData.pt community of computational structural biology researchers
17. New Insights into the Dsr pathway involved in the Anaerobic Respiration of Sulfate
18. Two decades of Martini: Better beads, broader scope
19. Parainfluenza Fusion Peptide Promotes Membrane Fusion by Assembling into Oligomeric Porelike Structures
20. Xport-A functions as a chaperone by stabilizing the first 5 transmembrane domains of Rhodopsin-1
21. Two decades of Martini: Better beads, broader scope.
22. MDAnalysis 2.0 and beyond: fast and interoperable, community driven simulation analysis
23. Improved Parameterization of Phosphatidylinositide Lipid Headgroups for the Martini 3 Coarse-Grain Force Field
24. SARS-CoV-2 variants impact RBD conformational dynamics and ACE2 accessibility
25. Overlapping Properties of the Short Membrane-Active Peptide BP100 With (i) Polycationic TAT and (ii) α-helical Magainin Family Peptides
26. Using zeta-potential measurements to quantify peptide partition to lipid membranes
27. Drug-lipid interaction evaluation: why a 19th century solution?
28. Coarse-Grained Parameterization of Nucleotide Cofactors and Metabolites: Protonation Constants, Partition Coefficients, and Model Topologies
29. Improved Parameterization of Phosphatidylinositide Lipid Headgroups for the Martini 3 Coarse-Grain Force Field.
30. Localization Preference of Antimicrobial Peptides on Liquid-Disordered Membrane Domains
31. Characterization of glycoinositolphosphoryl ceramide structure mutant strains of Cryptococcus neoformans
32. Adaptive resolution simulation of polarizable supramolecular coarse-grained water models.
33. Pitfalls of the Martini Model
34. Structure–Stability–Function Mechanistic Links in the Anti-Measles Virus Action of Tocopherol-Derivatized Peptide Nanoparticles
35. Lipid–Protein Interactions Are Unique Fingerprints for Membrane Proteins
36. The N-terminal amphipathic helix of Pex11p self-interacts to induce membrane remodelling during peroxisome fission
37. Analyzing Simulations of Lipid Mixtures: Phase Boundaries, Tie-Lines and Critical Points
38. Prediction of Thylakoid Lipid Binding Sites on Photosystem II
39. Lipid-protein interactions are unique fingerprints for membrane proteins
40. Exchange pathways of plastoquinone and plastoquinol in the photosystem II complex
41. High-Throughput Simulations Reveal Membrane-Mediated Effects of Alcohols on MscL Gating
42. Altered secondary structure of Dynorphin A associates with loss of opioid signalling and NMDA-mediated excitotoxicity in SCA23
43. Extending the Adress Multiscale Scheme for Protein and Bilayer Applications
44. In Silico Modeling of Biologically Complex Membranes
45. Hsc70-4 Deforms Membranes to Promote Synaptic Protein Turnover by Endosomal Microautophagy
46. Computational Lipidomics and the Lipid Organization of Cell Envelopes
47. A study on the mode of action of clinically relevant antimicrobial peptides
48. Dry Martini, a Coarse-Grained Force Field for Lipid Membrane Simulations with Implicit Solvent
49. Lipid Organization of the Plasma Membrane
50. Adaptive Resolution Simulation of MARTINI Solvents
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