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The destructive consequences of wind erosion have been reported in many studies, but accurate assessment of wind erosion is still a challenge, especially on large scales. Our research introduces two deep learning (DL) algorithms consisting of bidirectional gated recurrent unit (BiGRU), and bidirectional recurrent neural network (BiRNN) for spatial mapping of wind-erodible fraction of the soil (EF). EF was measured in 508 soil samples using the Chepil method. 15 key factors controlling EF including: soil, topography, and meteorology parameters were mapped. The performance of the most efficient DL model was interpreted by Game theory. The uncertainty of the DL models was quantified by deep quantile regression (DQR). Results showed that both DL models were performed very well with the BiRNN performing slightly better than BiGRU. The aggregate mean weight diameter (MWD) was a key variable for the mapping of soil susceptibility to wind erosion. Based on the BiRNN model, most of the study region was moderately and highly susceptible to wind erosion regarding the EF value (between 32 and 98). This indicates the urgent need for soil conservation measures in the region. The DQR results showed that the observed values of EF fell within the EF values predicted by the model. Overall, the suggested methodology has proven to be helpful in mapping wind erosion susceptibility on a large scale.