1,387 results on '"Microchip Electrophoresis"'
Search Results
2. A microchip electrophoresis-assisted triple-cycle cascade chemiluminescence signal amplification strategy for the ultrasensitive detection of microRNA-141 in cells
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Yang, Xing, Zhao, Jingjin, Hou, Li, Sakharov, Ivan Yu, Tian, Jianniao, and Zhao, Shulin
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- 2023
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3. Green Microfluidic Method for Sustainable and High-Speed Analysis of Basic Amino Acids in Nutritional Supplements.
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Pukleš, Iva, Páger, Csilla, Sakač, Nikola, Šarkanj, Bojan, Marković, Dean, Sakač, Marija Kraševac, and Jozanović, Marija
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AMINO acid analysis , *MICROCHIP electrophoresis , *DIETARY supplements , *AMINO acids , *DETECTION limit - Abstract
Amino acids (AAs) have broad nutritional, therapeutic, and medical significance and thus are one of the most common active ingredients of nutritional supplements. Analytical strategies for determining AAs are high-priced and often limited to methods that require modification of AA polarity or incorporation of an aromatic moiety. The aim of this work was to develop a new method for the determination of L-arginine, L-ornithine, and L-lysine on low-cost microchip electrophoresis instrumentation conjugated with capacitively coupled contactless conductivity detection. A solution consisting of 0.3 M acetic acid and 1 × 10−5 M iminodiacetic acid has been identified as the optimal background electrolyte, ensuring the shortest possible analysis time. The short migration times of amino acids (t ≤ 64 s) and method simplicity resulted in high analysis throughput with high precision and linearity (R2 ≥ 0.9971). The limit of detection values ranged from 0.15 to 0.19 × 10−6 M. The accuracy of the proposed method was confirmed by recovery measurements. The results were compared with CE-UV-VIS and HPLC-DAD methods and showed good agreement. This work represents the first successful demonstration of the ME-C4D analysis of L-arginine, L-ornithine, and L-lysine in real samples. [ABSTRACT FROM AUTHOR]
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- 2024
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4. Rapid Determination of Galantamine in Human Plasma by Microchip Electrophoresis With a Highly Integrated Contactless Conductivity Detector.
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Li, Zhilei, Lin, Gangyuan, and Yang, Xiujuan
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MICROCHIP electrophoresis , *GALANTHAMINE , *BUFFER solutions , *DETECTION limit , *ELECTROPHORESIS - Abstract
A novel and rapid method was developed for the determination of galantamine in human plasma by microchip electrophoresis with a highly integrated contactless conductivity detector (CCD). The instrumental parameters affecting the response of the detector, such as excitation frequency and excitation voltage, were examined and optimized. The electrophoresis conditions that influenced the separation and detection of galantamine, including the composition of buffer solution, buffer pH, buffer concentration, additives, injection time, and separation voltage were systematically investigated. Under the optimal conditions, the peak height had a good linear relationship with the concentration of galantamine in human plasma from 10 to 160 µg/L, and the correlation coefficient was 0.9992, the limit of detection reached 1.1 µg/L. The recoveries were between 98.6% and 102.1%. This sensitive, rapid, and convenient method is a good alternative to existing methods for galantamine determination. Also, this highly integrated CCD holds great promise in clinical biochemical analysis. [ABSTRACT FROM AUTHOR]
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- 2024
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5. Use of 3D printing to integrate microchip electrophoresis with amperometric detection.
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Selemani, Major A. and Martin, R. Scott
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MICROCHIP electrophoresis , *CAPILLARY electrophoresis , *THREE-dimensional printing , *SEPARATION (Technology) , *MICROELECTRODES - Abstract
This paper describes the use of PolyJet 3D printing to fabricate microchip electrophoresis devices with integrated microwire electrodes for amperometric detection. The fabrication process involves 3D printing of two separate pieces, a channel layer and an electrode layer. The channel layer is created by 3D printing on a pre-fabricated mold with a T-intersection. For the electrode layer, a stencil design is printed directly on the printing tray and covered with a piece of transparent glass. Microwire electrodes are adhered over the glass piece (guided by underlaying stencil) and a CAD design of the electrode layer is then printed on top of the microwire electrode. After delamination from the glass after printing, the microwire is embedded in the printed piece, with the stencil design ensuring that alignment and positioning of the electrode is reproducible for each print. After a thermal bonding step between the channel layer and electrode layer, a complete electrophoresis device with integrated microelectrodes for amperometric detection results. It is shown that this approach enables different microwire electrodes (gold or platinum) and sizes (100 or 50 µm) to be integrated in an end-channel configuration with no gap between the electrode and the separation channel. These devices were used to separate a mixture of catecholamines and the effect of separation voltage on the potential voltage applied on the working electrode was also investigated. In addition, the effect of electrode size on the number of theoretical plates and limit of detection was studied. Finally, a device that contains different channel heights and a detection electrode was 3D-printed to integrate continuous flow sampling with microchip electrophoresis and amperometric detection. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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6. Combination of on-line sample preconcentration by large-volume dual preconcentration by isotachophoresis and stacking (LDIS) with field-amplified sample injection (FASI) on Y-channel microchips
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Kitagawa, Fumihiko, Sato, Sora, Suzuki, Tomohiro, and Kawai, Takayuki
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- 2024
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7. Biosignature Molecules Accumulate and Persist in Evaporitic Brines: Implications for Planetary Exploration.
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Pozarycki, Chad, Seaton, Kenneth M., C. Vincent, Emily, Novak Sanders, Carlie, Nuñez, Nickie, Castillo, Mariah, Ingall, Ellery, Klempay, Benjamin, Pontefract, Alexandra, Fisher, Luke A., Paris, Emily R., Buessecker, Steffen, Alansson, Nikolas B., Carr, Christopher E., Doran, Peter T., Bowman, Jeff S., Schmidt, Britney E., and Stockton, Amanda M.
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PLANETARY exploration , *ANALYTICAL chemistry , *AMINO acid residues , *MICROCHIP electrophoresis , *HYDROPHILIC compounds , *SALT - Abstract
The abundance of potentially habitable hypersaline environments in our solar system compels us to understand the impacts of high-salt matrices and brine dynamics on biosignature detection efforts. We identified and quantified organic compounds in brines from South Bay Salt Works (SBSW), where evapoconcentration of ocean water enables exploration of the impact of NaCl- and MgCl2-dominated brines on the detection of potential biosignature molecules. In SBSW, organic biosignature abundance and distribution are likely influenced by evapoconcentration, osmolyte accumulation, and preservation effects. Bioluminescence assays show that adenosine triphosphate (ATP) concentrations are higher in NaCl-rich, low water activity (aw) samples (<0.85) from SBSW. This is consistent with the accumulation and preservation of ATP at low aw as described in past laboratory studies. The water-soluble small organic molecule inventory was determined by using microchip capillary electrophoresis paired with high-resolution mass spectrometry (µCE-HRMS). We analyzed the relative distribution of proteinogenic amino acids with a recently developed quantitative method using CE-separation and laser-induced fluorescence (LIF) detection of amino acids in hypersaline brines. Salinity trends for dissolved free amino acids were consistent with amino acid residue abundance determined from the proteome of the microbial community predicted from metagenomic data. This highlights a tangible connection up and down the "-omics" ladder across changing geochemical conditions. The detection of water-soluble organic compounds, specifically proteinogenic amino acids at high abundance (>7 mM) in concentrated brines, demonstrates that potential organic biomarkers accumulate at hypersaline sites and suggests the possibility of long-term preservation. The detection of such molecules in high abundance when using diverse analytical tools appropriate for spacecraft suggests that life detection within hypersaline environments, such as evaporates on Mars and the surface or subsurface brines of ocean world Europa, is plausible and argues such environments should be a high priority for future exploration. Key Words: Salts—Analytical chemistry—Amino acids—Biosignatures—Capillary electrophoresis—Preservation. Astrobiology 24, 795–812. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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8. Comprehensive Study of Total Nitrogen Content and Microfluidic Profiles in Additive-Enriched Plant-Based Drinks.
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Balogh-Hartmann, Fruzsina, Páger, Csilla, Bufa, Anita, Sipos, Zoltán, Dávidovics, Anna, Verzár, Zsófia, Marosvölgyi, Tamás, and Makszin, Lilla
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MICROCHIP electrophoresis ,MILK substitutes ,KIDNEY diseases ,MILK consumption ,MANUFACTURING industries - Abstract
The growing consumption of plant-based milk substitutes raises important questions about their composition. The various additives used by manufacturers, including those employed as flavor enhancers, protein additives, and stabilizers, may contain both protein and non-protein nitrogen components. In our study, we examined not only popular milk alternatives but also other milk substitutes made from specific plants. We present a reproducible and rapid method for the simultaneous qualitative and quantitative determination of the total nitrogen content in milk alternatives, focusing on applicability. Using the microchip gel electrophoretic method, we determined that the total nitrogen content differed from the protein content indicated on the packaging. Our results, along with statistical evaluations, supported the hypothesis that different brands of products, derived from the same plant source, resulted in different microfluidic profiles, likely due to the presence of additives. As expected, the microfluidic profiles of additive-free products differed from those of fortified products made from the same plant-based milk replacer. Total nitrogen content provides crucial information for individuals with kidney disease, as is essential to reduce the burden on the kidneys to slow deterioration, alleviate symptoms and avoid complications. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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9. A new green approach to l-histidine and β-alanine analysis in dietary supplements using rapid and simple contactless conductivity detection integrated with high-resolution glass-microchip electrophoresis.
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Pukleš, Iva, Páger, Csilla, Sakač, Nikola, Matasović, Brunislav, Kovač-Andrić, Elvira, Šarkanj, Bojan, Samardžić, Mirela, Budetić, Mateja, Molnárová, Katarína, Marković, Dean, Vesinger, Ana, and Jozanović, Marija
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DIETARY supplements , *AMINO acid analysis , *ALANINE , *HISTIDINE , *MICROCHIP electrophoresis , *ELEMENTAL diet , *ELECTROPHORESIS - Abstract
The analysis of dietary supplements is far less regulated than pharmaceuticals, leading to potential quality issues. Considering their positive effect, many athletes consume supplements containing l-histidine and β-alanine. A new microfluidic method for the determination of l-histidine and β-alanine in dietary supplement formulations has been developed. For the first time, capacitively coupled contactless conductivity detection was employed for the microchip electrophoresis of amino acids in real samples. A linear relationship between detector response and concentration was observed in the range of 10–100 µmol L–1 for l-histidine (R2 = 0.9968) and β-alanine (R2 = 0.9954), while achieved limits of detection (3 × S/N ratio) were 4.2 µmol L–1 and 5.2 µmol L–1, respectively. The accuracy of the method was confirmed using recovery experiments as well as CE-UV-VIS and HPLC-UV-VIS techniques. The developed method allows unambiguous identification of amino acids in native form without chemical derivatization and with the possibility of simultaneous analysis of amino acids with metal cations. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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10. Recent advances in microscale separation techniques for glycome analysis.
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Liu, Chenchen, Otsuka, Koji, and Kawai, Takayuki
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SEPARATION (Technology) , *MICROCHIP electrophoresis , *CAPILLARY electrophoresis , *NANOTECHNOLOGY , *GLYCANS , *LIQUID chromatography - Abstract
The glycomic analysis holds significant appeal due to the diverse roles that glycans and glycoconjugates play, acting as modulators and mediators in cellular interactions, cell/organism structure, drugs, energy sources, glyconanomaterials, and more. The glycomic analysis relies on liquid‐phase separation technologies for molecular purification, separation, and identification. As a miniaturized form of liquid‐phase separation technology, microscale separation technologies offer various advantages such as environmental friendliness, high resolution, sensitivity, fast speed, and integration capabilities. For glycan analysis, microscale separation technologies are continuously evolving to address the increasing challenges in their unique manners. This review discusses the fundamentals and applications of microscale separation technologies for glycomic analysis. It covers liquid‐phase separation technologies operating at scales generally less than 100 µm, including capillary electrophoresis, nanoflow liquid chromatography, and microchip electrophoresis. We will provide a brief overview of glycomic analysis and describe new strategies in microscale separation and their applications in glycan analysis from 2014 to 2023. [ABSTRACT FROM AUTHOR]
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- 2024
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11. Hydrodynamic injection for microchip electrophoresis: Development of an innovative passive system
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Amandine Dispas, Paul Emonts, Denis Vandormael, Damien Bernier, Fabian Dortu, Eric Ziemons, Philippe Hubert, Jacques Crommen, and Marianne Fillet
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Microchip electrophoresis ,Hydrodynamic injection ,Laser induced fluorescence ,Capillary valve ,Synthetic cathinones ,Analytical chemistry ,QD71-142 - Abstract
The world is facing challenges in terms of environmental sustainability and rising costs. In this context, miniaturized equipment such as microfluidic devices can be used to manipulate small volumes of fluids in micrometer-sized channels incorporating multiple components such as pumps, valves and mixers. Due to their high flexibility, these devices can provide sustainable alternatives to traditional platforms. The present study focuses on the design of a user-friendly and reliable microfluidic capillary electrophoresis chip for pharmaceutical applications. To meet pharmaceutical requirements in terms of quantification performance and overcome the injection variability usually observed with such microfluidic systems, a reliable and reproducible design for hydrodynamic injection using passive valves has been developed. It has been successfully used for synthetic cathinone analysis.
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- 2024
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12. Application of on-line sample preconcentration by large-volume dual preconcentration by isotachophoresis and stacking (LDIS) on straight-channel microchips
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Kitagawa, Fumihiko, Takahashi, Kazuki, Osanai, Reina, Sasaki, Ryota, and Kawai, Takayuki
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- 2024
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13. Photosensitive Hydrogel with Temperature‐Controlled Reversible Nano‐Apertures for Single‐Cell Protein Analysis.
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Xie, Haiyang, Guo, Wenke, Jiang, Hui, Zhang, Ting, Zhao, Lei, Hu, Jinjuan, Gao, Shuxin, Song, Sunfengda, Xu, Jiasu, Xu, Li, Sun, Xinyi, Ding, Yi, Jiang, Lai, and Ding, Xianting
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PROTEIN analysis , *PROTEIN fractionation , *SINGLE cell proteins , *WARBURG Effect (Oncology) , *MICROCHIP electrophoresis , *KREBS cycle - Abstract
Single cell western blot (scWB) is one of the most important methods for cellular heterogeneity profiling. However, current scWB based on conventional photoactive polyacrylamide hydrogel material suffers from the tradeoff between in‐gel probing and separation resolution. Here, a highly sensitive temperature‐controlled single‐cell western blotting (tc‐scWB) method is introduced, which is based on a thermo/photo‐dualistic‐sensitive polyacrylamide hydrogel, namely acrylic acid‐functionalized graphene oxide (AFGO) assisted, N‐isopropylacrylamide modified polyacrylamide (ANP) hydrogel. The ANP hydrogel is contracted at high‐temperature to constrain protein band diffusion during microchip electrophoretic separation, while the gel aperture is expanded under low‐temperature for better antibody penetration into the hydrogel. The tc‐scWB method enables the separation and profiling of small‐molecule‐weight proteins with highly crosslinked gel (12% T) in SDS‐PAGE. The tc‐scWB is demonstrated on three metabolic and ER stress‐specific proteins (CHOP, MDH2 and FH) in four pancreatic cell subtypes, revealing the expression of key enzymes in the Krebs cycle is upregulated with enhanced ER stress. It is found that ER stress can regulate crucial enzyme (MDH2 and FH) activities of metabolic cascade in cancer cells, boosting aerobic respiration to attenuate the Warburg effect and promote cell apoptosis. The tc‐scWB is a general toolbox for the analysis of low‐abundance small‐molecular functional proteins at the single‐cell level. [ABSTRACT FROM AUTHOR]
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- 2024
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14. Micro-extraction, pre-concentration, and microfluidic-based separation of organophosphate insecticides followed by the miniaturized electrochemical detection system.
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Aghdam, Abdollah Abdollahi, Chamanara, Mohsen, Laripour, Reza, and Ebrahimi, Mohsen
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INSECTICIDES , *METHYL parathion , *LIQUID-liquid extraction , *CHOLINESTERASE reactivators , *FENITROTHION , *MICROCHIP electrophoresis , *STANDARD hydrogen electrode , *CAPILLARY electrophoresis , *BLOOD plasma - Abstract
Introduction: A new analytical method based on the coupling of microextraction and microfluidics was developed and investigated for the pre-concentration, separation, and electrochemical detection of fenitrothion (FT) and parathion (PA) at the sub-ppm concentrations. Methods: In the first step, the microchip capillary electrophoresis technique was used to serve as a separation and detection system. Analytes were injected in the 40 mm long microchannel with 10 mm sidearms. Then, they were separated by applying a direct electrical field (+1800 V) between the buffer and detection reservoirs. 2-(n-morpholino)ethanesulfonic acid (MES) buffer (20 mM, pH 5) was used as a running buffer. The electrochemical detection was performed using three Pt microelectrodes with the width of working, counter, and reference electrodes (50, 250, and 250 µm, respectively) in the out-channel approach. Results: The system was devised to have the optimum detection potential equal to -1.2 V vs. pseudo-reference electrode. The dimensions of the SU-8 channel have 20 µm depth and 50 µm width. In the second step, an air-assisted liquid-liquid microextraction technique was used to extract and preconcentration of analytes from human blood plasma. Then, 1, 2 di-bromoethan was used as extractant solvent, the analytes were preconcentrated, and the sedimented solvent (50 µL) was evaporated in a 60 °C water bath followed by substitution of running buffer containing 10% ethanol. The optimal extraction cycles were found to be 8 with adding 1% NaCl to the aqueous phase. Analyzing time of the mentioned analytes was less than 100s, the precision range was 3.3 - 8.2 with a linear range of 0.8-100 ppm and 1.2-100 ppm for FT and PA, respectively. The extraction recoveries were about 91% and 87% for FT and PA, respectively. The detection limits for FT and PA were 240 and 360 ppb, respectively. Finally, the reliability of the method was investigated by GC-FID. Conclusion: The proposed method and device were validated and can be used as in situ and portable detection systems for detecting fenitrothion and parathion insecticides. [ABSTRACT FROM AUTHOR]
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- 2024
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15. Development and characterization of microchip electrophoresis pulsed amperometric detector-based soil pesticide analyser
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Rishi Raj, Suddhasatwa Basu, and Sandeep Kumar Jha
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Pulsed amperometry ,Microchip electrophoresis ,Soil pesticide analyser ,Portable potentiostat ,Microchip capillary electrophoresis ,Biotechnology ,TP248.13-248.65 - Abstract
The present study involved the fabrication and testing of a Microchip electrophoresis (MCE) device for pulse amperometry based detection of pesticides from their mixture. We were able to separate and then quantify three distinct types of insecticides, namely Chlorpyrifos, Imidacloprid, and Fipronil using on chip MCE followed by pulsed amperometric detection. All these results were obtained with an inhouse developed potentiostat cum controller unit with a detection time of only 15 min, employing a minimal sample size of 2 μL without any preconcentration or extraction procedure. The limit of detection (LOD) was calculated as 42.69 μM, 62.61 μM, and 71.14 μM or 14.96, 16.0 and 31.09 ppm, respectively for Chlorpyrifos, Imidacloprid, and Fipronil and their respective migration times as 536 ± 6.3 s, 484 ± 1.7 s, and 604 ± 3.5 s (n = 14). The sensitivity of detection was determined as 0.03 nA/μM for Chlorpyrifos, 0.0265 nA/μM for Imidacloprid, and 0.035 nA/μM for Fipronil. In addition, the efficacy of the produced microchip was confirmed by analysing soil extract spiked with known pesticides concentrations while the recovery percentage, representing a ratio of calculated concentration to spiked concentration multiplied by hundred was found as 84.3% (±9.4%) (n = 9). Thus, integrating microchip technology with the developed analytical instruments presents significant promise for practical field applications and the analysis of diverse analytes by way of creating a library where the migration coefficient and peak detection current are needed for any analyte which can be made cationic or anionic using a suitable buffer.
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- 2024
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16. Point-of-Care Diagnostic Test for Beta-Thalassemia.
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An, Ran, Avanaki, Alireza, Thota, Priyaleela, Nemade, Sai, Mehta, Amrish, and Gurkan, Umut A.
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FETAL hemoglobin ,POINT-of-care testing ,DIAGNOSIS methods ,MICROCHIP electrophoresis ,HIGH performance liquid chromatography ,BETA-Thalassemia - Abstract
Hemoglobin (Hb) disorders are among the most common monogenic diseases affecting nearly 7% of the world population. Among various Hb disorders, approximately 1.5% of the world population carries β-thalassemia (β-Thal), affecting 40,000 newborns every year. Early screening and a timely diagnosis are essential for β-thalassemia patients for the prevention and management of later clinical complications. However, in Africa, Southern Europe, the Middle East, and Southeast Asia, where β-thalassemia is most prevalent, the diagnosis and screening for β-thalassemia are still challenging due to the cost and logistical burden of laboratory diagnostic tests. Here, we present Gazelle, which is a paper-based microchip electrophoresis platform that enables the first point-of-care diagnostic test for β-thalassemia. We evaluated the accuracy of Gazelle for the β-Thal screening across 372 subjects in the age range of 4–63 years at Apple Diagnostics lab in Mumbai, India. Additionally, 30 blood samples were prepared to mimic β-Thal intermediate and β-Thal major samples. Gazelle-detected levels of Hb A, Hb F, and Hb A
2 demonstrated high levels of correlation with the results reported through laboratory gold standard high-performance liquid chromatography (HPLC), yielding a Pearson correlation coefficient = 0.99. This ability to obtain rapid and accurate results suggests that Gazelle may be suitable for the large-scale screening and diagnosis of β-Thal. [ABSTRACT FROM AUTHOR]- Published
- 2024
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17. Electrophoretic Determination of L-Carnosine in Health Supplements Using an Integrated Lab-on-a-Chip Platform with Contactless Conductivity Detection.
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Pukleš, Iva, Páger, Csilla, Sakač, Nikola, Šarkanj, Bojan, Matasović, Brunislav, Samardžić, Mirela, Budetić, Mateja, Marković, Dean, and Jozanović, Marija
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LABS on a chip , *RF values (Chromatography) , *ANALYTICAL chemistry , *MICROCHIP electrophoresis , *INTEGRATED circuits - Abstract
The health supplement industry is one of the fastest growing industries in the world, but there is a lack of suitable analytical methods for the determination of active compounds in health supplements such as peptides. The present work describes an implementation of contactless conductivity detection on microchip technology as a new strategy for the electrophoretic determination of L-carnosine in complex health supplement formulations without pre-concentration and derivatization steps. The best results were obtained in the case of +1.00 kV applied for 20 s for injection and +2.75 kV applied for 260 s for the separation step. Under the selected conditions, a linear detector response of 5 × 10−6 to 5 × 10−5 M was achieved. L-carnosine retention time was 61 s. The excellent reproducibility of both migration time and detector response confirmed the high precision of the method. The applicability of the method was demonstrated by the determination of L-carnosine in three different samples of health supplements. The recoveries ranged from 91 to 105%. Subsequent analysis of the samples by CE-UV-VIS and HPLC-DAD confirmed the accuracy of the obtained results. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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18. Determination of rhein and physcion in rhubarb by microchip capillary electrophoresis in mixed hydro‐organic solvent combined with laser‐induced fluorescence detection.
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Chen, ShengHao, Liang, YanLan, Li, YuanYuan, Sun, Yue, and He, Yang
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MICROCHIP electrophoresis , *CAPILLARY electrophoresis , *LASER-induced fluorescence , *RHUBARB , *DIMETHYL sulfoxide , *AMMONIUM acetate , *FORMAMIDE , *ORGANIC solvents - Abstract
Microchip capillary electrophoresis in mixed hydro‐organic solvent combined with laser‐induced fluorescence detection was developed for the separation and detection of physcion and rhein in rhubarb. In contrast to the conventional capillary electrophoresis method, ammonium acetate‐dimethyl sulfoxide was used as the basic buffer system in this method. The effects of background buffer, buffer apparent pH*, buffer concentration, water ratio, sample preparation method, and separation voltage on separation and detection were investigated. Optimized separation and detection conditions were obtained: the buffer consisted of 20 mmol/L of ammonium acetate in hydro‐organic solvent composed dimethyl sulfoxide, formamide, and water mixed at 60/20/20 (v/v/v) ratio. The separation voltage was 1.9 kV. Under these conditions, the physcion, rhein, and other components of rhubarb can be completely separated within 150 s. Under the methodological verification, good linearity (R ≥ 0.9995) for physcion and rhein, and low limits of detection (0.085 μg·mL−1 and 0.077 μg·mL−1, respectively), satisfactory peak area precisions, migration time precisions (1.74%–3.09%), and accuracy (recovery rate 97.8% and 101.4%) were achieved. It is shown that the proposed method is simple, efficient, fast, sensitive, simple instrument, consumes few samples, has low operating cost, and is linear. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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19. Recent developments and applications of capillary and microchip electrophoresis in proteomics and peptidomics (mid‐2018–2022).
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Štěpánová, Sille and Kašička, Václav
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MICROCHIP electrophoresis , *CAPILLARY electrophoresis , *CAPILLARY liquid chromatography , *CHEMICAL modification of proteins , *POST-translational modification , *PROTEOMICS , *FOOD chemistry - Abstract
This review gives a wide overview of recent advances and applications of capillary electrophoresis and microchip capillary electrophoresis methods in the fields of proteomics and peptidomics in the period from mid‐2018 up to the end of 2022. The methodological topics covering sample preparation and concentration techniques, hyphenation of capillary electrophoresis methods with mass spectrometry, and multidimensional separations by on‐line or off‐line coupled different capillary electrophoresis and liquid chromatography techniques are described and new developments in both bottom‐up and top‐down approaches in proteomics are presented. In addition, various applications of capillary electrophoresis methods in proteomic and peptidomic studies are demonstrated. They include monitoring of protein posttranslational modifications and applications in biological and biochemical research, clinical peptidomics and proteomics, and food analysis. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
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20. Microchip-Based Devices for Bioanalytical Applications
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Pinheiro, Kemilly M. P., Baldo, Thaisa A., Bressan, Lucas P., da Silva, José A. F., Coltro, Wendell K. T., Kubota, Lauro Tatsuo, editor, da Silva, José Alberto Fracassi, editor, Sena, Marcelo Martins, editor, and Alves, Wendel Andrade, editor
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- 2022
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21. On-line sample preconcentration by LVSEP-FASI with simple voltage control on Y-channel chips
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Kitagawa, Fumihiko, Yonekura, Takahiro, and Nukatsuka, Isoshi
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- 2024
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22. Microchip capillary electrophoresis-mass spectrometry for high-throughput simultaneous analysis of B-complex vitamins.
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Yang, Liu, Wang, Shuang, Li, Xiaolong, Wang, Weimin, Xu, Fuxing, and Ding, Chuan-Fan
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MICROCHIP electrophoresis , *VITAMIN B complex , *CAPILLARY electrophoresis , *INTEGRATED circuits , *SPECTROMETRY - Abstract
For the first time, the MCE-MS based on ZipChip platform was investigated and demonstrated a significant improvement over existing techniques when detecting B-complex vitamins, it presents three obvious merits. • The MCE-MS method has a linear response with excellent precision for replicate injections and LODs lower than 4 ppb. • The method is simple and fast (<3 min per sample), using a small amount of sample (∼5 nL) with low reagent consumption. • The inter/intraday reproducibility (RSD %) is less than 3 %. B-complex vitamins are essential micronutrients that maintaining health, and provide (individually/simultaneously) many important biological actions in organism. Therefore, sensitive, reliable analytical method to determine B-complex vitamins simultaneously in actual samples is significant. Conventional analytical methods for vitamins analysis are usually labor-intensive, time-consuming and mostly do not allow the simultaneous determination. Few papers have been published on capillary electrophoresis-mass spectrometry (CE-MS) analysis of individual vitamin B or B-complex vitamins. Microchip capillary electrophoresis (ME) offers less consumption of background electrolyte and reagents than CE, and fast separation as having several channels for high-throughput. ME based on ZipChip integrates sample injection, electrophoretic separation, and ESI functions into one platform, herein, for the first time, in this paper, the ME-MS based on ZipChip platform was investigated and demonstrated preliminarily a significant improvement over existing techniques. Because: the ME-MS method has a linear response with excellent precision for replicate injections and LODs lower than 4 ppb; The method is simple and fast (<3 min per sample), using a small amount of sample (∼5 nL) with low reagent consumption, making it suitable for high-throughput applications; The inter/intraday reproducibility (RSD %) is less than 3 %, which is important for clinic application. [ABSTRACT FROM AUTHOR]
- Published
- 2025
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23. The transgenic MutaMouse hepatocyte mutation assay in vitro: Mutagenicity and mutation spectra of six substances with different mutagenic mechanisms.
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Göpfert, Alina, Schuster, David M., Rülker, Claudia, Eichenlaub, Michael, Tokovenko, Bogdan, Dammann, Martina, Funk-Weyer, Dorothee, Honarvar, Naveed, and Landsiedel, Robert
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MUTAGENICITY testing , *ALKYLATING agents , *MUTAGENS , *MICROCHIP electrophoresis , *MITOMYCIN C - Abstract
Mutagenicity testing is a component of the hazard assessment of industrial chemicals, biocides, and pesticides. Mutations induced by test substances can be detected by in vitro and in vivo methods that have been adopted as OECD Test Guidelines. One of these in vivo methods is the Transgenic Rodent Assay (TGRA), OECD test guideline no. 488. An analogous in vitro TGRA has been described, but experience with this test method is limited. In this study, six in vivo TGRA positive mutagens were tested in the in vitro TGRA based on primary MutaMouse hepatocytes. In addition to the functional read-out of the lacZ reporter gene, induced mutations were analysed by next-generation sequencing (NGS). Five of the six in vivo TGRA positive mutagens (N-ethyl-N-nitrosourea (ENU), ethyl methanesulfonate (EMS), mitomycin C (MMC), benzo[ a ]pyrene (B[ a ]P), and azathioprine (AZA), but not cyproterone acetate) mutated the lacZ gene in vitro. NGS identified mutations which matched the mutagenic mechanisms described in the literature. The alkylating agent ENU induced a greater proportion of A:T to T:A transversions than did the other alkylating agent, EMS, whereas EMS increased smaller deletions (1–4 bp). G:C to T:A transversions accounted for the majority of mutations identified after treatments with MMC and B[ a ]P, both of which form monoadducts at the guanine N2 position. AZA induced mainly G:C to A:T transitions, explained by the structural similarity of one of its metabolites to guanine. An increased proportion of mid-size changes (0.3–2.5 kb) was detected only for the crosslinking mutagen MMC. The in vitro TGRA based on primary MutaMouse hepatocytes is a promising in vitro assay for the assessment of mutation induction, reflecting many aspects of the corresponding in vivo TGRA and allowing for mutation spectra analysis to evaluate the induced mutations. • MutaMouse primary hepatocytes had sufficient metabolic activity in vitro to detect the mutagenicity of the promutagens. • Next-generation sequencing of the lacZ reporter gene indicated distinct mutation spectra for each mutagen. • The identified mutation spectra in this in vitro TGRA matched the in vivo TGRA mutagenic mechanisms. • Technical amplicon sizing after microchip electrophoresis indicated clastogenicity of the test substances. • The in vitro TGRA based on MutaMouse PHs is suggested to be a suitable in vitro mutation assay to predict in vivo outcomes. [ABSTRACT FROM AUTHOR]
- Published
- 2025
- Full Text
- View/download PDF
24. Point-of-Care Diagnostic Test for Beta-Thalassemia
- Author
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Ran An, Alireza Avanaki, Priyaleela Thota, Sai Nemade, Amrish Mehta, and Umut A. Gurkan
- Subjects
hemoglobin variants ,hemoglobin disorders ,β-thalassemia ,anemia ,point-of-care screening ,microchip electrophoresis ,Biotechnology ,TP248.13-248.65 - Abstract
Hemoglobin (Hb) disorders are among the most common monogenic diseases affecting nearly 7% of the world population. Among various Hb disorders, approximately 1.5% of the world population carries β-thalassemia (β-Thal), affecting 40,000 newborns every year. Early screening and a timely diagnosis are essential for β-thalassemia patients for the prevention and management of later clinical complications. However, in Africa, Southern Europe, the Middle East, and Southeast Asia, where β-thalassemia is most prevalent, the diagnosis and screening for β-thalassemia are still challenging due to the cost and logistical burden of laboratory diagnostic tests. Here, we present Gazelle, which is a paper-based microchip electrophoresis platform that enables the first point-of-care diagnostic test for β-thalassemia. We evaluated the accuracy of Gazelle for the β-Thal screening across 372 subjects in the age range of 4–63 years at Apple Diagnostics lab in Mumbai, India. Additionally, 30 blood samples were prepared to mimic β-Thal intermediate and β-Thal major samples. Gazelle-detected levels of Hb A, Hb F, and Hb A2 demonstrated high levels of correlation with the results reported through laboratory gold standard high-performance liquid chromatography (HPLC), yielding a Pearson correlation coefficient = 0.99. This ability to obtain rapid and accurate results suggests that Gazelle may be suitable for the large-scale screening and diagnosis of β-Thal.
- Published
- 2024
- Full Text
- View/download PDF
25. Toward miniaturized analysis of chemical identity and purity of radiopharmaceuticals via microchip electrophoresis
- Author
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Ly, Jimmy, Ha, Noel S, Cheung, Shilin, and van Dam, R Michael
- Subjects
Biological Sciences ,Industrial Biotechnology ,Biomedical Imaging ,Bioengineering ,Chromatography ,High Pressure Liquid ,Electrophoresis ,Microchip ,Equipment Design ,Quality Control ,Radiopharmaceuticals ,Capillary electrophoresis ,Microchip electrophoresis ,Positron emission tomography ,Chemical purity analysis ,Microfluidics ,Quality control testing ,Chemical Sciences ,Engineering ,Analytical Chemistry ,Biological sciences ,Chemical sciences - Abstract
Miniaturized synthesis of positron emission tomography (PET) tracers is poised to offer numerous advantages including reduced tracer production costs and increased availability of diverse tracers. While many steps of the tracer production process have been miniaturized, there has been relatively little development of microscale systems for the quality control (QC) testing process that is required by regulatory agencies to ensure purity, identity, and biological safety of the radiotracer before use in human subjects. Every batch must be tested, and in contrast with ordinary pharmaceuticals, the whole set of tests of radiopharmaceuticals must be completed within a short-period of time to minimize losses due to radioactive decay. By replacing conventional techniques with microscale analytical ones, it may be possible to significantly reduce instrument cost, conserve lab space, shorten analysis times, and streamline this aspect of PET tracer production. We focus in this work on miniaturizing the subset of QC tests for chemical identity and purity. These tests generally require high-resolution chromatographic separation prior to detection to enable the approach to be applied to many different tracers (and their impurities), and have not yet, to the best of our knowledge, been tackled in microfluidic systems. Toward this end, we previously explored the feasibility of using the technique of capillary electrophoresis (CE) as a replacement for the "gold standard" approach of using high-performance liquid chromatography (HPLC) since CE offers similar separating power, flexibility, and sensitivity, but can readily be implemented in a microchip format. Using a conventional CE system, we previously demonstrated the successful separation of non-radioactive version of a clinical PET tracer, 3'-deoxy-3'-fluorothymidine (FLT), from its known by-products, and the separation of the PET tracer 1-(2'-deoxy-2'-fluoro-β-D-arabinofuranosyl)-cytosine (D-FAC) from its α-isomer, with sensitivity nearly as good as HPLC. Building on this feasibility study, in this paper, we describe the first effort to miniaturize the chemical identity and purity tests by using microchip electrophoresis (MCE). The fully automated proof-of-concept system comprises a chip for sample injection, a separation capillary, and an optical detection chip. Using the same model compound (FLT and its known by-products), we demonstrate that samples can be injected, separated, and detected, and show the potential to match the performance of HPLC. Addition of a radiation detector in the future would enable analysis of radiochemical identity and purity in the same device. We envision that eventually this MCE method could be combined with other miniaturized QC tests into a compact integrated system for automated routine QC testing of radiopharmaceuticals in the future. Graphical abstract Miniaturized quality control (QC) testing of batches of radiopharmaceuticals via microfluidic analysis. The proof-of-concept hybrid microchip electrophoresis (MCE) device demonstrated the feasibility of achieving comparable performance to conventional analytical instruments (HPLC or CE) for chemical purity testing.
- Published
- 2018
26. Direct digital sensing of protein biomarkers in solution.
- Author
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Krainer, Georg, Saar, Kadi L., Arter, William E., Welsh, Timothy J., Czekalska, Magdalena A., Jacquat, Raphaël P. B., Peter, Quentin, Traberg, Walther C., Pujari, Arvind, Jayaram, Akhila K., Challa, Pavankumar, Taylor, Christopher G., van der Linden, Lize-Mari, Franzmann, Titus, Owens, Roisin M., Alberti, Simon, Klenerman, David, and Knowles, Tuomas P. J.
- Subjects
MICROCHIP electrophoresis ,BIOMARKERS ,PROTEINS ,IMMUNOCHEMISTRY - Abstract
The detection of proteins is of central importance to biomolecular analysis and diagnostics. Typical immunosensing assays rely on surface-capture of target molecules, but this constraint can limit specificity, sensitivity, and the ability to obtain information beyond simple concentration measurements. Here we present a surface-free, single-molecule microfluidic sensing platform for direct digital protein biomarker detection in solution, termed digital immunosensor assay (DigitISA). DigitISA is based on microchip electrophoretic separation combined with single-molecule detection and enables absolute number/concentration quantification of proteins in a single, solution-phase step. Applying DigitISA to a range of targets including amyloid aggregates, exosomes, and biomolecular condensates, we demonstrate that the assay provides information beyond stoichiometric interactions, and enables characterization of immunochemistry, binding affinity, and protein biomarker abundance. Taken together, our results suggest a experimental paradigm for the sensing of protein biomarkers, which enables analyses of targets that are challenging to address using conventional immunosensing approaches. There are limitations with current protein sensing methods. Here the authors report DigitISA, a digital immunosensor assay based on microchip electrophoretic separation and single-molecule detection that enables quantitation of protein biomarkers in a single, solution-phase step. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
27. A Novel Symmetrical Peak Fitting Method Based on Improved WOA Algorithm for the Analysis of Microchip Electrophoresis Signals.
- Author
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He, Wenhe, Wang, Jianjiao, Liu, Yaping, Qin, Zhipeng, Sun, Cuimin, You, Hui, Wei, Xiangfu, and Liu, Ying
- Subjects
- *
MICROCHIP electrophoresis , *ALGORITHMS , *MATHEMATICAL optimization , *ION analysis - Abstract
The problem of overlapping peaks has been a challenge in microchip electrophoresis (ME) signal analysis. However, traditional peak fitting algorithms have difficulty analyzing overlapping peaks due to the high dependence on the starting point. In this study, we propose a symmetrical peak fitting method named the tent-mapped whale optimization algorithm and Levenberg–Marquardt (TWOALM), which combines a whale optimization algorithm (WOA) improved by one of the most commonly used chaotic maps, the tent map and the Levenberg–Marquardt (LM) algorithm. Specifically, we first derive the fitted model for the overlapping peaks, showing that it is separable nonlinear least squares, significantly reducing the number of parameters to be optimized. Second, we integrate the tent map into the WOA, which improves the convergence speed of the peak fitting algorithm. Finally, we propose an efficient peak-fitting algorithm that combines the improved WOA and LM. The advantage of the proposed algorithm is that it is significantly faster than WOA and significantly more accurate than the LM algorithm. The results of fitting the synthetic peaks and ME signals showed that the combination of the chaotic map-based WOA algorithm and the LM algorithm can significantly improve the peak fitting performance and provide an effective solution for the analysis of overlapping peaks. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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- View/download PDF
28. Separation and Detection of Tyrosine and Phenylalanine‐derived Oxidative Stress Biomarkers Using Microchip Electrophoresis with Electrochemical Detection.
- Author
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Weerasekara, Dhanushka B. and Lunte, Susan M.
- Subjects
- *
MICROCHIP electrophoresis , *MICELLAR electrokinetic chromatography , *OXIDATIVE stress , *TYROSINE , *REACTIVE nitrogen species , *OXYGEN reduction - Abstract
A method for the determination of selected aromatic amino acid biomarkers of oxidative stress using microchip electrophoresis with electrochemical detection is described. The separation of the major reaction products of phenylalanine and tyrosine with reactive nitrogen and oxygen species was accomplished using ligand exchange micellar electrokinetic chromatography with a PDMS/glass hybrid chip. Electrochemical detection was achieved using a pyrolyzed photoresist film working electrode. The system was evaluated for the analysis of the products of the Fenton reaction with tyrosine and phenylalanine, and the reaction of peroxynitrite with tyrosine. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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- View/download PDF
29. Surfactant-Based Polymer Microchip Electrophoresis of Ciprofloxacin Hydrochloride Monohydrate in Unfiltered Milk With Fluorescence Detection.
- Author
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Leclerc CA, Ty CGD, Worthington SS, Richardson MB, AlSawalhi AK, Wood L, Moomand K, and Collier CM
- Abstract
This work describes a cross-shaped PMMA ME system capable of detecting ciprofloxacin hydrochloride monohydrate (CPFH) in unfiltered milk samples. The cross-shaped PMMA ME system utilizes a BGE consisting primarily of the surface-active agent SDS to solubilize milk fat and improve the zeta potential of the PMMA microchannel surface. A theoretical lumped-element circuit model for cross-shaped ME is introduced in this work to calculate the migration time of CPFH. This manuscript improves the capabilities of PMMA-based ME for CPFH in milk using an SDS-based BGE. The presented ME system has a faster migration time, higher mean output voltage, and thinner full-width at half-maximum than previously reported dairy-based biosensor systems. Most notably, the migration time of the new system is under 10 min, being the time associated with the milking of cattle. The system is also found to be able to detect the presence of milk fat. Discussion is included of potential future integration with existing high-sensitivity methodologies to place the overall ME system's limit of detection below an established target. To the authors' knowledge, this is the first reported account of a PMMA ME system capable of detecting CPFH in unfiltered milk., (© 2025 The Author(s). Electrophoresis published by Wiley‐VCH GmbH.)
- Published
- 2025
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30. A pH-mediated field amplification sample stacking technique based on portable microchip electrophoresis heavy metal ion detection system
- Author
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Liu, Yaping, He, Wenhe, Lu, Zihao, Wang, Jianjiao, Sun, Cuimin, Su, Jian, Mo, Chengwu, and You, Hui
- Published
- 2023
- Full Text
- View/download PDF
31. Nitrite Determination in Environmental Water Samples Using Microchip Electrophoresis Coupled with Amperometric Detection.
- Author
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Lucas, Simone Bernardino, Duarte, Lucas Mattos, Rezende, Kariolanda Cristina Andrade, and Coltro, Wendell Karlos Tomazelli
- Subjects
MICROCHIP electrophoresis ,ENVIRONMENTAL sampling ,WATER sampling ,LACTIC acid ,WATER use ,NITROGEN cycle - Abstract
Nitrite is considered an important target analyte for environmental monitoring. In water resources, nitrite is the result of the nitrogen cycle and the leaching processes of pesticides based on nitrogenous compounds. A high concentration of nitrite can be associated with intoxication processes and metabolic disorders in humans. The present study describes the development of a portable analytical methodology based on microchip electrophoresis coupled with amperometric detection for the determination of nitrite in environmental water samples. Electrophoretic and detection conditions were optimized, and the best separations were achieved within 60 s by employing a mixture of 30 mmol L
−1 lactic acid and 15 mmol L−1 histidine (pH = 3.8) as a running buffer applying 0.7 V to the working electrode (versus Pt) for amperometric measurements. The developed methodology revealed a satisfactory linear behavior in the concentration range between 20 and 80 μmolL−1 (R2 = 0.999) with a limit of detection of 1.3 μmolL−1 . The nitrite concentration was determined in five water samples and the achieved values ranged from (28.7 ± 1.6) to (67.1 ± 0.5) µmol L−1 . The data showed that using the proposed methodology revealed satisfactory recovery values (83.5–103.8%) and is in good agreement with the reference technique. Due to its low sample consumption, portability potential, high analytical frequency, and instrumental simplicity, the developed methodology may be considered a promising strategy to monitor and quantitatively determine nitrite in environmental samples. [ABSTRACT FROM AUTHOR]- Published
- 2022
- Full Text
- View/download PDF
32. Rapid Microchip Electrophoretic Separation of Novel Transcriptomic Body Fluid Markers for Forensic Fluid Profiling.
- Author
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Layne, Tiffany R., Nouwairi, Renna L., Fleming, Rachel, Blair, Haley, and Landers, James P.
- Subjects
MICROCHIP electrophoresis ,BODY fluids ,MICROFLUIDIC devices ,TRANSCRIPTOMES ,CRIMINAL evidence ,SERODIAGNOSIS ,CELL separation - Abstract
Initial screening of criminal evidence often involves serological testing of stains of unknown composition and/or origin discovered at a crime scene to determine the tissue of origin. This testing is presumptive but critical for contextualizing the scene. Here, we describe a microfluidic approach for body fluid profiling via fluorescent electrophoretic separation of a published mRNA panel that provides unparalleled specificity and sensitivity. This centrifugal microfluidic approach expedites and automates the electrophoresis process by allowing for simple, rotationally driven flow and polymer loading through a 5 cm separation channel; with each disc containing three identical domains, multi-sample analysis is possible with a single disc and multi-sample detection per disc. The centrifugal platform enables a series of sequential unit operations (metering, mixing, aliquoting, heating, storage) to execute automated electrophoretic separation. Results show on-disc fluorescent detection and sizing of amplicons to perform comparably with a commercial 'gold standard' benchtop instrument and permitted sensitive, empirical discrimination between five distinct body fluids in less than 10 min. Notably, our microfluidic platform represents a faster, simpler method for separation of a transcriptomic panel to be used for forensically relevant body fluid identification. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
33. Portable Analytical Platforms Associated with Chemometrics for Rapid Screening of Whisky Adulteration.
- Author
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Rezende, Kariolanda C. A., Duarte, Lucas M., Pinheiro, Kemilly M. P., Cardoso, Thiago M. G., Nogueira, Sandro A., and Coltro, Wendell K. T.
- Abstract
Adulteration of alcoholic beverages is a worldwide concern for authorities, mainly due to risks to human health. This report describes the use of portable analytical platforms combined with chemometrics to trace the authenticity profile of whisky. Rapid analysis by miniaturized methodologies based on separation and colorimetric reactions as well as pH and conductivity measurements is proposed as a strategy for forensic screening at the point of need. Anionic profiles of whisky were obtained using a microchip electrophoresis system with integrated contactless conductivity detection. The indirect detection of caramel and the determination of alcohol content were performed by colorimetric reactions on paper-based analytical devices, which were explored in single microzones and foldable devices, respectively. These methodologies were successfully applied to a total of 50 whisky samples, 45 of which were adulterated and 5 authentic. A correlation study involving these markers and their analytical response through different techniques was then performed. A chemometric tool employing all these parameters was able to distinguish more than 90% of adulterated samples from authentic ones, demonstrating that the proposed methodology is effective for mapping whisky samples. These portable methods have great potential for use at the site of apprehension, due to the low consumption of samples and speed of analysis. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
34. Comparison of capillary electrophoresis-based methods for the analytical characterization of purity and stability of in vitro transcribed mRNA.
- Author
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Mantri, Prerana, Juneja, Bindiya, Henderson, Steven, Koufos, Evan, Moon, Youmi, Dayeh, Daniel M., Di Grandi, Deanna, Fu, Yue, Muthusamy, Kathir, Ihnat, Peter M., Palackal, Nisha, and Pyles, Erica A.
- Subjects
- *
MICROCHIP electrophoresis , *HIGH throughput screening (Drug development) , *LIQUID chromatography , *RNA , *VACCINATION - Abstract
Messenger RNA (mRNA) is rapidly growing as a therapeutic modality for vaccination and the treatment of a wide range of diseases. As a result, there is an increased demand for mRNA-based analytical methods capable of assessing purity and stability, which are considered critical quality attributes (CQAs). In recent decades capillary electrophoresis (CE) has emerged alongside liquid chromatography (LC) as an important tool for the assessment of purity and stability of mRNA therapeutics. CE offers a variety of advantages over conventional LC or gel-based analytical methods, including reduced injection volume, increased resolution, and increased separation efficiency. In this study we compared CE-based analytical methods: the Agilent RNA 6000 Nano Kit, the Revvity RNA Reagent Kit, the Sciex RNA 9000 Purity and Integrity Kit, and the Agilent HS RNA Kit. These methods were evaluated on their vendor-recommended instruments: the Bioanalyzer, LabChip GXII, PA800 Plus, and Fragment Analyzer, respectively. We assessed the ability of these methods to measure mRNA integrity, purity, and stability. Furthermore, several parameters for each method were also assessed: selectivity, precision, resolution, analysis time, and ease of use. Based on our results, all four methods are suitable for use in the characterization of in vitro transcribed (IVT) mRNA, depending on the intended application. The Sciex RNA 9000 Purity and Integrity kit method achieved the highest selectivity and resolving power compared with the other methods, making it the most suitable for high-resolution, in-depth sample characterization. In comparison, the Agilent RNA 6000 Nano Kit, Revvity RNA Reagent Kit, and Agilent HS RNA Kit achieved lower selectivity and resolution, but their faster analysis times make them more suitable for high-throughput and screening applications. • 4 CGE-based analytical methods were evaluated. • Methods were comparatively benchmarked using four IVT mRNA samples. • The PA800 Plus-based method demonstrated the highest selectivity and resolution. • The other 3 methods are more suitable for high-throughput applications. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
35. Editorial for the Special Issue on Lab-on-PCB Devices.
- Author
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Perdigones, Francisco
- Subjects
STEREOLITHOGRAPHY ,MEDICAL electronics ,ELECTRONIC equipment ,PRINTED circuits ,MICROFLUIDIC devices ,MICROCHIP electrophoresis - Abstract
Keywords: lab-on-PCB; printed circuit board; biomedical applications; electronics; sensors; biosensors; actuators; lab-on-chip; microfluidics EN lab-on-PCB printed circuit board biomedical applications electronics sensors biosensors actuators lab-on-chip microfluidics N.PAG N.PAG 4 08/03/22 20220701 NES 220701 The use of Printed Circuit Boards (PCBs) has seen a remarkable growth over the last decade, with applications in engineering, medicine, biology, chemistry, etc. The lab-on-PCB devices are an interesting improvement of lab-on-chip devices due to the inexpensive characteristic of Printed Circuit Boards, and the possibility of including microfluidic circuits, sensors, and actuators, together with electronics in the same substrate. Therefore, the achievement of a robust development of biosensor using PCB substrates is mandatory for a successful future of lab-on-PCB devices. Apart from sensors and biosensors, the lab-on-PCB devices can include actuators, such as microheaters [[4]], and devices for microfluid handling, for example, electrowetting on dielectric devices (EWOD) [[5]]. [Extracted from the article]
- Published
- 2022
- Full Text
- View/download PDF
36. 3D printed microfluidic device for automated, pressure-driven, valve-injected microchip electrophoresis of preterm birth biomarkers.
- Author
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Esene, Joule E., Boaks, Mawla, Bickham, Anna V., Nordin, Gregory P., and Woolley, Adam T.
- Subjects
- *
MICROCHIP electrophoresis , *MICROFLUIDIC devices , *PREMATURE labor , *PEPTIDES , *FLUID control , *CELL separation , *ELECTRO-osmosis - Abstract
A 3D printed, automated, pressure-driven injection microfluidic system for microchip electrophoresis (µCE) of preterm birth (PTB)-related peptides and proteins has been developed. Functional microvalves were formed, either with a membrane thickness of 5 µm and a layer exposure time of 450 ms or with a membrane thickness of 10 µm and layer exposure times of 300–350 ms. These valves allowed for control of fluid flow in device microchannels during sample injection for µCE separation. Device design and µCE conditions using fluorescently labeled amino acids were optimized. A sample injection time of 0.5 s and a separation voltage of 450 V (460 V/cm) yielded the best separation efficiency and resolution. We demonstrated the first µCE separation with pressure-driven injection in a 3D printed microfluidic device using fluorescently labeled PTB biomarkers and 532 nm laser excitation. Detection limits for two PTB biomarkers, peptide 1 and peptide 2, for an injection time of 1.5 s were 400 pM and 15 nM, respectively, and the linear detection range for peptide 2 was 50–400 nM. This 3D printed microfluidic system holds promise for future integration of on-chip sample preparation processes with µCE, offering promising possibilities for PTB risk assessment. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
37. A Novel Planar Grounded Capacitively Coupled Contactless Conductivity Detector for Microchip Electrophoresis.
- Author
-
Wang, Jianjiao, Liu, Yaping, He, Wenhe, Chen, Yuanfen, and You, Hui
- Subjects
MICROCHIP electrophoresis ,DETECTORS ,PRINTED circuits ,ENVIRONMENTAL monitoring ,GROUND cover plants - Abstract
In the microchip electrophoresis with capacitively coupled contactless conductivity detection, the stray capacitance of the detector causes high background noise, which seriously affects the sensitivity and stability of the detection system. To reduce the effect, a novel design of planar grounded capacitively coupled contactless conductivity detector (PG-C4D) based on printed circuit board (PCB) is proposed. The entire circuit plane except the sensing electrodes is covered by the ground electrode, greatly reducing the stray capacitance. The efficacy of the design has been verified by the electrical field simulation and the electrophoresis detection experiments of inorganic ions. The baseline intensity of the PG-C4D was less than 1/6 of that of the traditional C4D. The PG-C4D with the new design also demonstrated a good repeatability of migration time, peak area, and peak height (n = 5, relative standard deviation, RSD ≤ 0.3%, 3%, and 4%, respectively), and good linear coefficients within the range of 0.05–0.75 mM (R
2 ≥ 0.986). The detection sensitivity of K+ , Na+ , and Li+ reached 0.05, 0.1, and 0.1 mM respectively. Those results prove that the new design is an effective and economical approach which can improve sensitivity and repeatability of a PCB based PG-C4D, which indicate a great application potential in agricultural and environmental monitoring. [ABSTRACT FROM AUTHOR]- Published
- 2022
- Full Text
- View/download PDF
38. Rapid detection of high-risk HPV16 and HPV18 based on microchip electrophoresis
- Author
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Zhaoxuan Fan, Xiao Feng, Weifei Zhang, Xueji Zhang, and Jin-Ming Lin
- Subjects
Human papillomavirus ,DNA analysis ,Polymerase chain reaction ,Microchip electrophoresis ,Detection ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Researches on detection of human papillomavirus (HPV) high-risk samples were carried out by polymerase chain reaction (PCR) coupled with microchip electrophoresis (MCE). Herein, we introduced a simple, rapid, automated method for detecting high-risk samples HPV16 and HPV18. In this research, general primers were initially selected to obtain sufficient detectable yield by PCR to verify feasibility of MCM method for HPV detection, then type-specific primers were further used to evaluate the specificity of MCE method. The results indicated MCE method was capable of specifically detecting high-risk HPV16 and HPV18, and also enabled simultaneous detection of multiplex samples. This MCE method described here has been successfully applied to HPV detection and displayed excellent reliability demonstrating by sequencing results. The inherent capability of MCE facilitated HPV detection conducted in a small chip with automated, high throughput, massive parallelized analysis. We envision that MCE method will definitely pave a way for clinical diagnosis, and even on-site screening of cervical cancer.
- Published
- 2020
- Full Text
- View/download PDF
39. Contactless Conductivity Detection for Capillary Electrophoresis-Developments From 2020 to 2024.
- Author
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Hauser PC and Kubáň P
- Abstract
The review covering the development of capillary electrophoresis with capacitively coupled contactless conductivity detection from 2020 to 2024 is the latest in a series going back to 2004. The article considers applications employing conventional capillaries and planar lab-on-chip devices as well as fundamental and technical developments of the detector and complete electrophoresis instrumentation., (© 2024 The Author(s). Electrophoresis published by Wiley‐VCH GmbH.)
- Published
- 2024
- Full Text
- View/download PDF
40. Combination of strong anion exchange liquid chromatography with microchip capillary electrophoresis sodium dodecyl sulfate for rapid two-dimensional separations of complex protein mixtures.
- Author
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Zagst, Holger, Elgert, Christin, Behrends, Sönke, and Wätzig, Hermann
- Subjects
- *
MICROCHIP electrophoresis , *SODIUM dodecyl sulfate , *CAPILLARY liquid chromatography , *CAPILLARY electrophoresis , *PROTEIN fractionation , *CHO cell - Abstract
Two-dimensional separations provide a simple way to increase the resolution and peak capacity of complex protein separations. The feasibility of a recently developed instrumental approach for two-dimensional separations of proteins was evaluated. The approach is based on the general principle of two-dimensional gel electrophoresis. In the first dimension, semi-preparative strong anion exchange high-performance liquid chromatography is utilized and fractions are collected by means of a fraction collector. They are subsequently analyzed in the second dimension with microchip capillary electrophoresis sodium dodecyl sulfate. Microchip capillary electrophoresis provides the necessary speed (approximately 1 min/fraction) for short analysis. In this study, three different samples were investigated. Different constructs of soluble guanylyl cyclase were expressed in Sf9-cells using the baculovirus expression system. Cell lysates were analyzed and the resulting separations were compared. In our experimental setup, the soluble guanylyl cyclase was identified among hundreds of other proteins in these cell lysates, indicating its potential for screening, process control, or analysis. The results were validated by immunoblotting. Samples from Chinese hamster ovary cell culture before and after a purification step were investigated and approximately 9% less impurities could be observed. The separation patterns obtained for human plasma are closely similar to patterns obtained with two-dimensional gel electrophoresis and a total of 218 peaks could be observed. Overall, the approach was well applicable to all samples and, based on these results, further directions for improvements were identified.. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
41. 3D-printed microchip electrophoresis device containing spiral electrodes for integrated capacitively coupled contactless conductivity detection.
- Author
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Costa, Brenda M. C., Coelho, Aline G., Beauchamp, Michael J., Nielsen, Jacob B., Nordin, Gregory P., Woolley, Adam T., and da Silva, José A. F.
- Subjects
- *
MICROCHIP electrophoresis , *DIELECTROPHORESIS , *ELECTRODES , *3-D printers , *ETHYLENE glycol , *GALLIUM - Abstract
In this work, we demonstrate for the first time the design and fabrication of microchip electrophoresis devices containing cross-shaped channels and spiral electrodes around the separation channel for microchip electrophoresis and capacitively coupled contactless conductivity detection. The whole device was prepared in a digital light processing–based 3D printer in poly(ethylene glycol) diacrylate resin. Outstanding X-Y resolution of the customized 3D printer ensured the fabrication of 40-μm cross section channels. The spiral channels were filled with melted gallium to form conductive electrodes around the separation channel. We demonstrate the applicability of the device on the separation of sodium, potassium, and lithium cations by microchip electrophoresis. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
42. Zinc-Finger-Protein-Based Microfluidic Electrophoretic Mobility Reversal Assay for Quantitative Double-Stranded DNA Analysis.
- Author
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Arega, Nebiyu Getachew, Heard, Whitney N., Tran, Nguyen Anh Nhung, Jung, Sukyo, Meng, Jianyun, Chung, Minsub, Kim, Moon-Soo, and Kim, Dohyun
- Abstract
We report for the first time a microfluidic electrophoretic mobility reversal assay (MEMRA) for double-stranded DNA (dsDNA) detection using zinc-finger proteins (ZFPs) and a polyacrylamide-gel (PAG) sieving matrix. Microfluidic DNA analysis was actively studied because of its importance in biology and medicine. Most microfluidic DNA detection techniques rely on time-consuming denaturation and hybridization processes. To address this limitation, ZFP was employed as a novel affinity probe, which directly binds to a specific sequence of dsDNA without denaturation and renaturation. A mildly alkaline electrophoresis buffer (pH 8.6) was used for our MEMRA, instead of a strongly alkaline buffer (pH 10.75) for separating the ZFP–dsDNA complex from interfering species. At pH 8.6, the mobility of ZFP was reversed upon binding with dsDNA (complex pI = ~ 5.33), and unbound ZFP (pI = ~ 9.3) was excluded from loading. Therefore, the ZFP–dsDNA complex was detected without zone interferences. Furthermore, nonspecific interactions and band dispersion, observed in strongly alkaline buffer, were effectively mitigated in the MEMRA. The ZFP–dsDNA complex was fully separated (separation resolution ≥ 2.0) and detected rapidly (12–15 s at a separation distance of 160–240 μm) using on-chip photopatterned 3–16%T discontinuous PAG. The MEMRA performance was excellent, providing a detection limit of 50 pM and a detection range of 100 pM–500 nM for seb (Staphylococcus enterotoxin B) gene dsDNA oligonucleotides. We expect that our ZFP-based MEMRA will find broad utility in biology and medicine where the rapid, specific, and quantitative detection of dsDNA is of paramount importance. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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43. Electrokinetic instability due to streamwise conductivity gradients in microchip electrophoresis.
- Author
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Dubey, Kaushlendra, Sanghi, Sanjeev, Gupta, Amit, and Bahga, Supreet Singh
- Subjects
ELECTRO-osmosis ,MICROCHIP electrophoresis ,DENATURING gradient gel electrophoresis ,PROPER orthogonal decomposition ,MICROCHANNEL flow ,NON-uniform flows (Fluid dynamics) ,ELECTRIC fields - Abstract
We present an experimental and numerical investigation of electrokinetic instability (EKI) in microchannel flow with streamwise conductivity gradients, such as those observed during sample stacking in capillary electrophoresis. A plug of a low-conductivity electrolyte solution is initially sandwiched between two high-conductivity zones in a microchannel. This spatial conductivity gradient is subjected to an external electric field applied along the microchannel axis, and for sufficiently strong electric fields an instability sets in. We have explored the physics of this EKI through experiments and numerical simulations, and supplemented the results using scaling analysis. We performed EKI experiments at different electric field values and visualised the flow using a passive fluorescent tracer. The experimental data were analysed using the proper orthogonal decomposition technique to obtain a quantitative measure of the threshold electric field for the onset of instability, along with the corresponding coherent structures. To elucidate the physical mechanism underlying the instability, we performed high-resolution numerical simulations of ion transport coupled with fluid flow driven by the electric body force. Simulations reveal that the non-uniform electroosmotic flow due to axially varying conductivity field causes a recirculating flow within the low-conductivity region, and creates a new configuration wherein the local conductivity gradients are orthogonal to the applied electric field. This configuration leads to EKI above a threshold electric field. The spatial features of the instability predicted by the simulations and the threshold electric field are in good agreement with the experimental observations and provide useful insight into the underlying mechanism of instability. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
44. Point-of-care microchip electrophoresis for integrated anemia and hemoglobin variant testing.
- Author
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An, Ran, Man, Yuncheng, Iram, Shamreen, Kucukal, Erdem, Hasan, Muhammad Noman, Huang, Yuning, Goreke, Utku, Bode, Allison, Hill, Ailis, Cheng, Kevin, Sekyonda, Zoe, Ahuja, Sanjay P., Little, Jane A., Hinczewski, Michael, and Gurkan, Umut A.
- Subjects
- *
HEMOGLOBIN polymorphisms , *MICROCHIP electrophoresis , *SICKLE cell anemia , *ERYTHROPOIETIN receptors , *ANEMIA , *ARTIFICIAL neural networks , *FETAL hemoglobin - Abstract
Anemia affects over 25% of the world's population with the heaviest burden borne by women and children. Genetic hemoglobin (Hb) variants, such as sickle cell disease, are among the major causes of anemia. Anemia and Hb variant are pathologically interrelated and have an overlapping geographical distribution. We present the first point-of-care (POC) platform to perform both anemia detection and Hb variant identification, using a single paper-based electrophoresis test. Feasibility of this new integrated diagnostic approach is demonstrated via testing individuals with anemia and/or sickle cell disease. Hemoglobin level determination is performed by an artificial neural network (ANN) based machine learning algorithm, which achieves a mean absolute error of 0.55 g dL−1 and a bias of −0.10 g dL−1 against the gold standard (95% limits of agreement: 1.5 g dL−1) from Bland–Altman analysis on the test set. Resultant anemia detection is achieved with 100% sensitivity and 92.3% specificity. With the same tests, subjects with sickle cell disease were identified with 100% sensitivity and specificity. Overall, the presented platform enabled, for the first time, integrated anemia detection and hemoglobin variant identification using a single point-of-care test. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
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45. Cell-free DNA concentration and fragment size fraction correlate with FDG PET/CT-derived parameters in NSCLC patients.
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González de Aledo-Castillo, JM., Casanueva-Eliceiry, S., Soler-Perromat, A., Fuster, D., Pastor, V., Reguart, N., Viñolas, N., Reyes, R., Vollmer, I., Paredes, P., and Puig-Butillé, JA.
- Subjects
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CELL-free DNA , *COMPUTED tomography , *MICROCHIP electrophoresis , *NON-small-cell lung carcinoma , *CIRCULATING tumor DNA , *FLUORIMETRY - Abstract
Purpose: The aim of our study was to investigate the correlation between cfDNA concentration and fragment size fraction with FDG PET/CT- and CT-derived parameters in untreated NSCLC patient. Methods: Fifty-three patients diagnosed of locally advanced or metastatic NSCLC who had undergone FDG PET/CT, CT and cfDNA analysis prior to any treatment were included in this retrospective study. CfDNA concentration was measured by fluorometry and fragment size fractions were determined by microchip electrophoresis. [18F]F-FDG PET/CT was performed and standardised uptake values (SUV), metabolic tumour volume (MTV) and total lesion glycolysis (TLG) were calculated for primary, extrapulmonary and total disease. CT scans were evaluated according to RECIST 1.1 criteria. Results: CfDNA concentration showed a positive correlation with extrapulmonary MTV (r2 = 0.36, P = 0.009), and extrapulmonary TLG (r2 = 0.35, P = 0.009) and their whole-body (wb) ratios. Higher concentrations of total cfDNA were found in patients with liver lesions. Short fragments of cfDNA (100–250 bp) showed a positive correlation with extrapulmonary MTV (r2 = 0.49, P = 0.0005) and extrapulmonary TLG (r2 = 0.39, P = 0.006) and their respective wb ratios, and a negative correlation with SUVmean (r2 = −0.31, P = 0.03) and SUVmean/SUVmax ratio (r2 = −0.34, P = 0.02). A higher fraction of short cfDNA fragments was found in patients with liver and pleural lesions. Conclusions: This study supports the hypothesis that cfDNA concentration and short cfDNA fragment size fraction reflect the tumour burden as well as metabolic activity in advanced NSCLC patients. This suggests their suitability as complementary tests for a more accurate diagnosis of tumour metabolic behaviour and to allow personalised therapies. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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- View/download PDF
46. Knowing more from less: miniaturization of ligand-binding assays and electrophoresis as new paradigms for at-line monitoring and control of mammalian cell bioprocesses.
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Pinto, Inês F, Mikkonen, Saara, Josefsson, Leila, Mäkinen, Meeri E-L, Soares, Ruben RG, Russom, Aman, Emmer, Åsa, and Chotteau, Veronique
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- *
MICROCHIP electrophoresis , *ELECTROPHORESIS , *CAPILLARY electrophoresis , *BIOTECHNOLOGICAL process monitoring , *MICROFLUIDIC devices , *DIELECTROPHORESIS - Abstract
[Display omitted] • Microfluidic devices enable fully automated and integrated at-line monitoring systems. • Microchip capillary electrophoresis is a promising tool for bioprocess monitoring. • Microfluidic affinity assays can be used for detection of bioprocess target proteins. • Miniaturization enables PAT at reduced cost and without need of complex instruments. Monitoring technologies for Process Analytical Technology (PAT) in mammalian cell cultures are often focusing on the same hand full parameters although a deeper knowledge and control of a larger panel of culture components would highly benefit process optimization, control and robustness. This short review highlights key advances in microfluidic affinity assays and microchip capillary electrophoresis (MCE). Aiming at the miniaturization and integration of PAT, these can detect at-line a variety of metabolites, proteins and Critical Quality Attributes (CQA's) in a bioprocess. Furthermore, discrete analytical components, which can potentially support the translation of increasingly mature microfluidic technologies towards this novel application, are also presented as a comprehensive toolbox ranging from sample preparation to signal acquisition. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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47. High-throughput relative quantification of fatty acids by 12-plex isobaric labeling and microchip capillary electrophoresis - Mass spectrometry.
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Wang, Zicong, Li, Miyang, Xu, Shuling, Sun, Liang, and Li, Lingjun
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MICROCHIP electrophoresis , *FATTY acids , *MASS spectrometry , *DETECTION limit , *CAPILLARY electrophoresis , *CELL anatomy , *DIFFUSION tensor imaging , *FLUORESCENCE angiography - Abstract
Fatty acids (FAs) are essential cellular components and play important roles in various biological processes. Importantly, FAs produced by microorganisms from renewable sugars are considered sustainable substrates for biodiesels and oleochemicals. Their complex structures and diverse functional roles in biochemical processes necessitate the development of efficient and accurate methods for their quantitative analysis. Here, we developed a novel method for relative quantification of FAs by combining 12-plex isobaric N,N - di methyl leu cine-derivatized e thyle n ediamine (DiLeuEN) labeling and microchip capillary electrophoresis-mass spectrometry (CE-MS). This method enables simultaneous quantification of 12 samples in a single MS analysis. DiLeuEN labeling introduced tertiary amine center structure into FAs, which makes them compatible with the positive mode separation of commercial microchip CE systems and further improves the sensitivity. The CE separation parameters were optimized, and the quantification accuracy was assessed using FA standards. Microchip CE-MS detection exhibited high sensitivity with a femtomole level detection limit and a total analysis time within 8 min. Finally, the applicability of our method to complex biological samples was demonstrated by analyzing FAs produced by four industrially relevant yeast strains (Saccharomyces cerevisiae , Yarrowia lipolytica YB-432 , Yarrowia lipolytica Po1f and Rhodotorula glutinis). The analysis time for each sample is less than 1 min. This work addresses the current challenges in the field by introducing a method that combines microchip-based capillary electrophoresis separation with multiplex isobaric labeling. Our method not only offers remarkable sensitivity and rapid analysis speed but also the capability to quantify fatty acids across multiple samples simultaneously, which holds significant potential for extensive application in FA quantitative studies in diverse research areas, promising an enhanced understanding of FA functions and mechanisms. [Display omitted] • Integrated 12-plex DiLeuEN isobaric labeling with CE-MS to enable rapid and precise fatty acids (FAs) relative quantification. • Enhanced the throughput of FAs quantification with notable precision and accuracy through 12-plex DiLeuEN isobaric labeling. • Achieved fast FAs separation in 8 min with fmol level detection limits via microchip CE-MS. • Successfully applied the developed method for quantitative analysis of FAs across four different yeast strains. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
48. Quantification of multiple microRNAs by microchip electrophoresis assisted by strand displacement amplification.
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Xie, Qihui, Chen, Jingyi, Zhang, Jingzi, Chu, Zhaohui, Zhang, Fan, and Wang, Qingjiang
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MICROCHIP electrophoresis , *MICRORNA , *DETECTION limit , *LUNG cancer , *CANCER diagnosis - Abstract
• An ultrasensitive quantification method for multiple miRNAs was established. • Strand displacement amplification was developed to amplify multiple miRNAs. • Three associated miRNAs in A549 cells were successfully detected. MicroRNAs (miRNAs) are increasingly recognized as potential biomarkers for the early diagnosis of cancer. However, the concurrent detection of multiple miRNAs in biological samples presents a significant challenge due to their high homogeneity and low abundance. This study introduced a novel approach combining strand displacement amplification (SDA) with microchip electrophoresis (MCE) for the simultaneous quantitation of trace levels of three miRNAs associated with cancer: miRNA-21, miRNA-145, and miRNA-221. Specifically designed probes were utilized to selectively capture the target miRNAs, thereby initiating the SDA process in a single solution without cross-interference. Under optimized conditions, the SDA-MCE method achieved the limit of detection (LOD) as low as 0.02 fM (S/ N = 3) and the limit of quantitation (LOQ) as low as 0.1 fM across a broad linear range spanning from 0.1 fM to 1 pM. The SDA reaction was completed in approximately 1.5 h, and all target products were separated within 135 s through MCE. Application of this method for the simultaneous detection of these three miRNAs in human lung cancer cell samples yielded satisfactory results. Featuring high sensitivity, rapid analysis, minimal reagent consumption, and straightforward operation, the proposed MCE-SDA strategy holds considerable promise for multi-miRNAs detection applications. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
49. Aptamer-mediated double strand displacement amplification with microchip electrophoresis for ultrasensitive detection of Salmonella typhimurium.
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Lu, Yuqi, Xie, Qihui, Chen, Jingyi, Chu, Zhaohui, Zhang, Fan, and Wang, Qingjiang
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MICROCHIP electrophoresis , *SALMONELLA typhimurium , *SALMONELLA detection , *NUCLEIC acid separation , *BACTERIAL diseases - Abstract
Rapid and quantitative detection of foodborne bacteria is of great significance to public health. In this work, an aptamer-mediated double strand displacement amplification (SDA) strategy was first explored to couple with microchip electrophoresis (MCE) for rapid and ultrasensitive detection of Salmonella typhimurium (S. Typhimurium). In double-SDA, a bacteria-identified probe consisting of the aptamer (Apt) and trigger sequence (Tr) was ingeniously designed. The aptamer showed high affinity to the S. Typhimurium , releasing the Tr sequence from the probe. The released Tr hybridized with template C1 chain, initiating the first SDA to produce numerous output strands (OS). The second SDA process was induced with the hybridization of the liberated OS and template C2 sequence, generating a large number of reporter strands (RS), which were separated and quantified through MCE. Cascade signal amplification and rapid separation of nucleic acids could be realized by the proposed double-SDA method with MCE, achieving the limit of detection for S. typhimurium down to 6 CFU/mL under the optimal conditions. Based on the elaborate design of the probes, the double-SDA assisted MCE strategy achieved better amplification performance, showing high separation efficiency and simple operation, which has satisfactory expectation for bacterial disease diagnosis. [Display omitted] • An aptamer-mediated double SDA-MCE method was first explored for rapid and ultrasensitive detection of S. typhimurium. • The proposed method shows high sensitivity and the limit of detection for S. typhimurium down to 6 CFU/mL. • This method has satisfactory expectation for bacterial disease diagnosis. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
50. Comparison of serum cell-free DNA between postmortem and living samples.
- Author
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Fujihara, Junko, Takinami, Yoshikazu, Kawai, Yasuyuki, Kimura-Kataoka, Kaori, and Takeshita, Haruo
- Subjects
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CELL-free DNA , *CAUSES of death , *MICROCHIP electrophoresis , *AUTOPSY , *HEART diseases , *CARDIAC patients - Abstract
• Elevated cell-free DNA (cfDNA) concentrations were observed in postmortem subjects. • cfDNA level increased with postmortem intervals in subjects who died of asphyxia. • cfDNA concentration was slightly higher in subjects who died from internal cause. • A high concentration of a 150–200 bp fragment characterized postmortem samples. • A fragment larger than 10,000 bp, which originated from necrosis, was found in only two subjects. Cell-free DNA (cfDNA) originates from apoptotic and/or necrotic cells. Few reports are available that examine cfDNA from postmortem samples. Therefore, this study investigated differences between postmortem and biogenic subjects in concentration and fragment distribution of serum cfDNA. We also clarified features of serum cfDNA in postmortem subjects. The results revealed that postmortem subjects had significantly higher cfDNA concentrations than healthy controls and patients with cardiac disease. Serum cfDNA concentrations increased slightly with postmortem interval in subjects who died of asphyxia, and they were slightly higher in subjects who died from internal vs. external causes. Microchip electrophoresis of serum cfDNA revealed a fragment larger than 10,000 bp in only two postmortem subjects; we speculate that the fragment may have originated from necrotic cells. A relatively high concentration of one 150–200 bp fragment was characteristic of postmortem samples. This fragment may have been derived from apoptosis or other processes. We also observed ladder fragments in some subjects who died from external causes. Although additional research is needed for verification, serum cfDNA concentrations and fragment patterns possibly be used as a tool to estimate postmortem intervals and cause of death. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
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