93,636 results on '"Mirza, A"'
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2. Book Entitled: 'Barr-e-Sagheer Hind mein Muslim Khawateen ki Haisiyat (The Status of Muslim Women in the Indian Subcontinent)' edited by Prof. Farida Siddiqui and Sheikh Abdul Taha, MANUU, Hyderabad, 2023; ISBN: 978-93-95203-62-3
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Fatmi, Syed Nadeem and Mirza, Amna
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- 2024
3. Post harvest applications of cold plasma technology: A review
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Mani, Arghya, Krishna, K. Rama, and Mirza, Anis
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- 2023
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4. Of Chimeras, Harmony, and Kintsugi: Towards a Historicist Epistemology of Paleontological Reconstruction, Theory-Change, and Exploring Heuristics
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Mirza, Ali
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- 2022
5. Mitigating covariate shift in non-colocated data with learned parameter priors
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Khan, Behraj, Mirza, Behroz, Durrani, Nouman, and Syed, Tahir
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Computer Science - Machine Learning ,Computer Science - Computer Vision and Pattern Recognition - Abstract
When training data are distributed across{ time or space,} covariate shift across fragments of training data biases cross-validation, compromising model selection and assessment. We present \textit{Fragmentation-Induced covariate-shift Remediation} ($FIcsR$), which minimizes an $f$-divergence between a fragment's covariate distribution and that of the standard cross-validation baseline. We s{how} an equivalence with popular importance-weighting methods. {The method}'s numerical solution poses a computational challenge owing to the overparametrized nature of a neural network, and we derive a Fisher Information approximation. When accumulated over fragments, this provides a global estimate of the amount of shift remediation thus far needed, and we incorporate that as a prior via the minimization objective. In the paper, we run extensive classification experiments on multiple data classes, over $40$ datasets, and with data batched over multiple sequence lengths. We extend the study to the $k$-fold cross-validation setting through a similar set of experiments. An ablation study exposes the method to varying amounts of shift and demonstrates slower degradation with $FIcsR$ in place. The results are promising under all these conditions; with improved accuracy against batch and fold state-of-the-art by more than $5\%$ and $10\%$, respectively.
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- 2024
6. LiveXiv -- A Multi-Modal Live Benchmark Based on Arxiv Papers Content
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Shabtay, Nimrod, Polo, Felipe Maia, Doveh, Sivan, Lin, Wei, Mirza, M. Jehanzeb, Chosen, Leshem, Yurochkin, Mikhail, Sun, Yuekai, Arbelle, Assaf, Karlinsky, Leonid, and Giryes, Raja
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Computer Science - Computer Vision and Pattern Recognition - Abstract
The large-scale training of multi-modal models on data scraped from the web has shown outstanding utility in infusing these models with the required world knowledge to perform effectively on multiple downstream tasks. However, one downside of scraping data from the web can be the potential sacrifice of the benchmarks on which the abilities of these models are often evaluated. To safeguard against test data contamination and to truly test the abilities of these foundation models we propose LiveXiv: A scalable evolving live benchmark based on scientific ArXiv papers. LiveXiv accesses domain-specific manuscripts at any given timestamp and proposes to automatically generate visual question-answer pairs (VQA). This is done without any human-in-the-loop, using the multi-modal content in the manuscripts, like graphs, charts, and tables. Moreover, we introduce an efficient evaluation approach that estimates the performance of all models on the evolving benchmark using evaluations of only a subset of models. This significantly reduces the overall evaluation cost. We benchmark multiple open and proprietary Large Multi-modal Models (LMMs) on the first version of our benchmark, showing its challenging nature and exposing the models true abilities, avoiding contamination. Lastly, in our commitment to high quality, we have collected and evaluated a manually verified subset. By comparing its overall results to our automatic annotations, we have found that the performance variance is indeed minimal (<2.5%). Our dataset is available online on HuggingFace, and our code will be available here.
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- 2024
7. GLOV: Guided Large Language Models as Implicit Optimizers for Vision Language Models
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Mirza, M. Jehanzeb, Zhao, Mengjie, Mao, Zhuoyuan, Doveh, Sivan, Lin, Wei, Gavrikov, Paul, Dorkenwald, Michael, Yang, Shiqi, Jha, Saurav, Wakaki, Hiromi, Mitsufuji, Yuki, Possegger, Horst, Feris, Rogerio, Karlinsky, Leonid, and Glass, James
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Computer Science - Computer Vision and Pattern Recognition - Abstract
In this work, we propose a novel method (GLOV) enabling Large Language Models (LLMs) to act as implicit Optimizers for Vision-Langugage Models (VLMs) to enhance downstream vision tasks. Our GLOV meta-prompts an LLM with the downstream task description, querying it for suitable VLM prompts (e.g., for zero-shot classification with CLIP). These prompts are ranked according to a purity measure obtained through a fitness function. In each respective optimization step, the ranked prompts are fed as in-context examples (with their accuracies) to equip the LLM with the knowledge of the type of text prompts preferred by the downstream VLM. Furthermore, we also explicitly steer the LLM generation process in each optimization step by specifically adding an offset difference vector of the embeddings from the positive and negative solutions found by the LLM, in previous optimization steps, to the intermediate layer of the network for the next generation step. This offset vector steers the LLM generation toward the type of language preferred by the downstream VLM, resulting in enhanced performance on the downstream vision tasks. We comprehensively evaluate our GLOV on 16 diverse datasets using two families of VLMs, i.e., dual-encoder (e.g., CLIP) and encoder-decoder (e.g., LLaVa) models -- showing that the discovered solutions can enhance the recognition performance by up to 15.0% and 57.5% (3.8% and 21.6% on average) for these models., Comment: Code: https://github.com/jmiemirza/GLOV
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- 2024
8. Mining Your Own Secrets: Diffusion Classifier Scores for Continual Personalization of Text-to-Image Diffusion Models
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Jha, Saurav, Yang, Shiqi, Ishii, Masato, Zhao, Mengjie, Simon, Christian, Mirza, Muhammad Jehanzeb, Gong, Dong, Yao, Lina, Takahashi, Shusuke, and Mitsufuji, Yuki
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence - Abstract
Personalized text-to-image diffusion models have grown popular for their ability to efficiently acquire a new concept from user-defined text descriptions and a few images. However, in the real world, a user may wish to personalize a model on multiple concepts but one at a time, with no access to the data from previous concepts due to storage/privacy concerns. When faced with this continual learning (CL) setup, most personalization methods fail to find a balance between acquiring new concepts and retaining previous ones -- a challenge that continual personalization (CP) aims to solve. Inspired by the successful CL methods that rely on class-specific information for regularization, we resort to the inherent class-conditioned density estimates, also known as diffusion classifier (DC) scores, for continual personalization of text-to-image diffusion models. Namely, we propose using DC scores for regularizing the parameter-space and function-space of text-to-image diffusion models, to achieve continual personalization. Using several diverse evaluation setups, datasets, and metrics, we show that our proposed regularization-based CP methods outperform the state-of-the-art C-LoRA, and other baselines. Finally, by operating in the replay-free CL setup and on low-rank adapters, our method incurs zero storage and parameter overhead, respectively, over the state-of-the-art., Comment: Work under review, 26 pages of manuscript
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- 2024
9. AI-assisted Gaze Detection for Proctoring Online Exams
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Shih, Yong-Siang, Zhao, Zach, Niu, Chenhao, Iberg, Bruce, Sharpnack, James, and Baig, Mirza Basim
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Computer Science - Artificial Intelligence ,Computer Science - Human-Computer Interaction - Abstract
For high-stakes online exams, it is important to detect potential rule violations to ensure the security of the test. In this study, we investigate the task of detecting whether test takers are looking away from the screen, as such behavior could be an indication that the test taker is consulting external resources. For asynchronous proctoring, the exam videos are recorded and reviewed by the proctors. However, when the length of the exam is long, it could be tedious for proctors to watch entire exam videos to determine the exact moments when test takers look away. We present an AI-assisted gaze detection system, which allows proctors to navigate between different video frames and discover video frames where the test taker is looking in similar directions. The system enables proctors to work more effectively to identify suspicious moments in videos. An evaluation framework is proposed to evaluate the system against human-only and ML-only proctoring, and a user study is conducted to gather feedback from proctors, aiming to demonstrate the effectiveness of the system., Comment: Accepted to HCOMP-24 Works-in-Progress and Demonstration track
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- 2024
10. Advancing Depression Detection on Social Media Platforms Through Fine-Tuned Large Language Models
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Shah, Shahid Munir, Gillani, Syeda Anshrah, Baig, Mirza Samad Ahmed, Saleem, Muhammad Aamer, and Siddiqui, Muhammad Hamzah
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Computer Science - Computer Vision and Pattern Recognition ,14J60 (Primary) 14F05, 14J26 (Secondary) ,F.2.2 ,I.2.7 - Abstract
This study investigates the use of Large Language Models (LLMs) for improved depression detection from users social media data. Through the use of fine-tuned GPT 3.5 Turbo 1106 and LLaMA2-7B models and a sizable dataset from earlier studies, we were able to identify depressed content in social media posts with a high accuracy of nearly 96.0 percent. The comparative analysis of the obtained results with the relevant studies in the literature shows that the proposed fine-tuned LLMs achieved enhanced performance compared to existing state of the-art systems. This demonstrates the robustness of LLM-based fine-tuned systems to be used as potential depression detection systems. The study describes the approach in depth, including the parameters used and the fine-tuning procedure, and it addresses the important implications of our results for the early diagnosis of depression on several social media platforms., Comment: 16 pages
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- 2024
11. Evaluating Gender, Racial, and Age Biases in Large Language Models: A Comparative Analysis of Occupational and Crime Scenarios
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Mirza, Vishal, Kulkarni, Rahul, and Jadhav, Aakanksha
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Computer Science - Artificial Intelligence - Abstract
Recent advancements in Large Language Models(LLMs) have been notable, yet widespread enterprise adoption remains limited due to various constraints. This paper examines bias in LLMs-a crucial issue affecting their usability, reliability, and fairness. Researchers are developing strategies to mitigate bias, including debiasing layers, specialized reference datasets like Winogender and Winobias, and reinforcement learning with human feedback (RLHF). These techniques have been integrated into the latest LLMs. Our study evaluates gender bias in occupational scenarios and gender, age, and racial bias in crime scenarios across four leading LLMs released in 2024: Gemini 1.5 Pro, Llama 3 70B, Claude 3 Opus, and GPT-4o. Findings reveal that LLMs often depict female characters more frequently than male ones in various occupations, showing a 37% deviation from US BLS data. In crime scenarios, deviations from US FBI data are 54% for gender, 28% for race, and 17% for age. We observe that efforts to reduce gender and racial bias often lead to outcomes that may over-index one sub-class, potentially exacerbating the issue. These results highlight the limitations of current bias mitigation techniques and underscore the need for more effective approaches., Comment: 11 pages, 17 figures
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- 2024
12. The effect of non-selective measurement on the parameter estimation within spin-spin model
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Mirza, Ali Raza and Al-Khalili, Jim
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Quantum Physics - Abstract
We investigate the role of non-selective measurement on the estimation of system-environment parameters. Projective measurement is the popular method of initial state preparation which always prepares a pure state. However, in various physical situations of physical interest, this selective measurement becomes unrealistic. In this paper, we compare the estimation results obtained via projective measurement with the results obtained via unitary operation. We argue that in typical situations, parameters can be estimated with higher accuracy if the initial state is prepared with the unitary operator (a pulse). We consider the spin-spin model where a central two-level system (probe) interacts with the collections of two-level systems (bath). A probe interacts with a bath and attains a thermal equilibrium state, then via unitary operation, the initial state is prepared which evolves unitarily. The properties of the bath are imprinted on the reduced dynamics. Due to the initial probe-bath correlations present in the thermal equilibrium state, an additional factor arises in the dynamics which has a phenomenal role in the parameter estimation. In this paper, we study the estimation of bath temperature and probe-bath coupling strength which is quantified by the quantum Fisher information. Our results are promising as one can improve the precision of the estimates by orders of magnitude via non-selective measurement and by incorporating the effect of initial correlations., Comment: 10 Pages, 7 figures
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- 2024
13. Fine-Grained Complexity of Multiple Domination and Dominating Patterns in Sparse Graphs
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Künnemann, Marvin and Redzic, Mirza
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Computer Science - Data Structures and Algorithms ,F.2 - Abstract
The study of domination in graphs has led to a variety of domination problems studied in the literature. Most of these follow the following general framework: Given a graph $G$ and an integer $k$, decide if there is a set $S$ of $k$ vertices such that (1) some inner property $\phi(S)$ (e.g., connectedness) is satisfied, and (2) each vertex $v$ satisfies some domination property $\rho(S, v)$ (e.g., there is an $s\in S$ that is adjacent to $v$). Since many real-world graphs are sparse, we seek to determine the optimal running time of such problems in both the number $n$ of vertices and the number $m$ of edges in $G$. While the classic dominating set problem admits a rather limited improvement in sparse graphs (Fischer, K\"unnemann, Redzic SODA'24), we show that natural variants studied in the literature admit much larger speed-ups, with a diverse set of possible running times. Specifically, we obtain conditionally optimal algorithms for: 1) $r$-Multiple $k$-Dominating Set (each vertex must be adjacent to at least $r$ vertices in $S$): If $r\le k-2$, we obtain a running time of $(m/n)^{r} n^{k-r+o(1)}$ that is conditionally optimal assuming the 3-uniform hyperclique hypothesis. In sparse graphs, this fully interpolates between $n^{k-1\pm o(1)}$ and $n^{2\pm o(1)}$, depending on $r$. Curiously, when $r=k-1$, we obtain a randomized algorithm beating $(m/n)^{k-1} n^{1+o(1)}$ and we show that this algorithm is close to optimal under the $k$-clique hypothesis. 2) $H$-Dominating Set ($S$ must induce a pattern $H$). We conditionally settle the complexity of three such problems: (a) Dominating Clique ($H$ is a $k$-clique), (b) Maximal Independent Set of size $k$ ($H$ is an independent set on $k$ vertices), (c) Dominating Induced Matching ($H$ is a perfect matching on $k$ vertices).
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- 2024
14. Automated Body Composition Analysis Using DAFS Express on 2D MRI Slices at L3 Vertebral Level
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Akella, Varun, Bagherinasab, Razeyeh, Li, Jia Ming, Nguyen, Long, Chow, Vincent Tze Yang, Lee, Hyunwoo, Popuri, Karteek, and Beg, Mirza Faisal
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Body composition analysis is vital in assessing health conditions such as obesity, sarcopenia, and metabolic syndromes. MRI provides detailed images of skeletal muscle (SKM), visceral adipose tissue (VAT), and subcutaneous adipose tissue (SAT), but their manual segmentation is labor-intensive and limits clinical applicability. This study validates an automated tool for MRI-based 2D body composition analysis- (Data Analysis Facilitation Suite (DAFS) Express), comparing its automated measurements with expert manual segmentations using UK Biobank data. A cohort of 399 participants from the UK Biobank dataset was selected, yielding 423 single L3 slices for analysis. DAFS Express performed automated segmentations of SKM, VAT, and SAT, which were then manually corrected by expert raters for validation. Evaluation metrics included Jaccard coefficients, Dice scores, Intraclass Correlation Coefficients (ICCs), and Bland-Altman Plots to assess segmentation agreement and reliability. High agreements were observed between automated and manual segmentations with mean Jaccard scores: SKM 99.03%, VAT 95.25%, and SAT 99.57%; and mean Dice scores: SKM 99.51%, VAT 97.41%, and SAT 99.78%. Cross-sectional area comparisons showed consistent measurements with automated methods closely matching manual measurements for SKM and SAT, and slightly higher values for VAT (SKM: Auto 132.51 cm^2, Manual 132.36 cm^2; VAT: Auto 137.07 cm^2, Manual 134.46 cm^2; SAT: Auto 203.39 cm^2, Manual 202.85 cm^2). ICCs confirmed strong reliability (SKM: 0.998, VAT: 0.994, SAT: 0.994). Bland-Altman plots revealed minimal biases, and boxplots illustrated distribution similarities across SKM, VAT, and SAT areas. On average DAFS Express took 18 seconds per DICOM. This underscores its potential to streamline image analysis processes in research and clinical settings, enhancing diagnostic accuracy and efficiency.
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- 2024
15. Sparse learning enabled by constraints on connectivity and function
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Baig, Mirza M. Junaid and Stepanyants, Armen
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Condensed Matter - Disordered Systems and Neural Networks ,Quantitative Biology - Neurons and Cognition - Abstract
Sparse connectivity is a hallmark of the brain and a desired property of artificial neural networks. It promotes energy efficiency, simplifies training, and enhances the robustness of network function. Thus, a detailed understanding of how to achieve sparsity without jeopardizing network performance is beneficial for neuroscience, deep learning, and neuromorphic computing applications. We used an exactly solvable model of associative learning to evaluate the effects of various sparsity-inducing constraints on connectivity and function. We determine the optimal level of sparsity achieved by the $l_0$ norm constraint and find that nearly the same efficiency can be obtained by eliminating weak connections. We show that this method of achieving sparsity can be implemented online, making it compatible with neuroscience and machine learning applications.
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- 2024
16. Retrieval of Thermally-Resolved Water Vapor Distributions in Disks Observed with JWST-MIRI
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Romero-Mirza, Carlos E., Banzatti, Andrea, Öberg, Karin I., Pontoppidan, Klaus M., Salyk, Colette, Najita, Joan, Blake, Geoffrey A., Krijt, Sebastiaan, Arulanantham, Nicole, Pinilla, Paola, Long, Feng, Rosotti, Giovanni, Andrews, Sean M., Wilner, David J., Calahan, Jenny, and Collaboration, The JDISCS
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Astrophysics - Earth and Planetary Astrophysics - Abstract
The mid-infrared water vapor emission spectrum provides a novel way to characterize the delivery of icy pebbles towards the innermost ($<5$ au) regions of planet-forming disks. Recently, JWST MIRI-MRS showed that compact disks exhibit an excess of low-energy water vapor emission relative to extended multi-gapped disks, suggesting that icy pebble drift is more efficient in the former. We carry out detailed emission line modeling to retrieve the excitation conditions of rotational water vapor emission in a sample of four compact and three extended disks within the JDISC Survey. We present two-temperature H$_2$O slab model retrievals and, for the first time, constrain the spatial distribution of water vapor by fitting parametric radial temperature and column density profiles. Such models statistically outperform the two-temperature slab fits. We find a correlation between the observable hot water vapor mass and stellar mass accretion rate, as well as an anti-correlation between cold water vapor mass and sub-mm dust disk radius, confirming previously reported water line flux trends. We find that the mid-IR spectrum traces H$_2$O with temperatures down to 180-300 K, but the coldest 150-170 K gas remains undetected. Furthermore the H$_2$O temperature profiles are generally steeper and cooler than the expected `super-heated' dust temperature in passive irradiated disks. The column density profiles are used to estimate icy pebble mass fluxes, which suggest that compact and extended disks may produce markedly distinct inner-disk exoplanet populations if local feeding mechanisms dominate their assembly., Comment: Accepted for publication in ApJ
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- 2024
17. Method development and estimation of phenylenediamine in gastric contents, blood and urine
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Jamil, Muhammad Adnan, Aslam, Muhammad Shahzad, Sadiq, Muhammad Abbas, Wasim, Muhammad, Santiago, Cecilia Diaz, Javed, Osama, and Mirza, Ahmed Shahid
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- 2021
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18. Linguistic Technopreneurship in Business Success Digitalization for Small Medium Enterprises in West Java: Implication for Language Education
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Yogi Suprayogi, Senny Luckyardi, Dede Kurnia, and Mirza Abdi Khairusy
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The increase in borderless digital-based business competition shows how language education is impacted by neoliberalism in this global era. We explore how linguistic technopreneurship (LT) roles is increasingly constructed as a form of linguistic entrepreneurship to exploit language-related resources to enhance one's socioeconomic value strategically. This research aims to critically examine the influence of LT toward business success digitalization for Small Medium Enterprises in West Java and it's implication for Language Education. The research also focusing on the creation of novelty, namely linguistic technopreneurship (LT), which is a refinement of entrepreneurial linguistics (EL). LT is expected to be able to explain how linguistic entrepreneurship can be indexed from two different aspects, namely how to package language education and digital business success. We then discuss under what conditions the notion of linguistic technopreneurship can be applied to digital platform-based business settings and what kind of contradictions this gives rise to. The method used is quantitative, and it involves carrying out SEM analysis. A non-probability sampling technique was used to obtain a minimum of 250 Micro, Small and Medium Enterprises and Industry owners who run their businesses through digital platforms in West Java province, which is the province with the most significant number of Micro, Small and Medium Enterprises and Industries in Indonesia. The research results show that LT significantly influences the success of business success and impact the language education practice. It can be concluded that language education is an added value for a person and influences socioeconomic success.
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- 2024
19. Missing Values in Longitudinal Proteome Dynamics Studies: Making a Case for Data Multiple Imputation.
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Yan, Yu, Sankar, Baradwaj, Mirza, Bilal, Ng, Dominic, Pelletier, Alexander, Huang, Sarah, Wang, Wei, Watson, Karol, Wang, Ding, and Ping, Peipei
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data imputation ,longitudinal data ,multiple imputation ,protein turnover rate ,Humans ,Proteome ,Proteomics ,Animals ,Mice ,Longitudinal Studies ,Data Interpretation ,Statistical - Abstract
Temporal proteomics data sets are often confounded by the challenges of missing values. These missing data points, in a time-series context, can lead to fluctuations in measurements or the omission of critical events, thus hindering the ability to fully comprehend the underlying biomedical processes. We introduce a Data Multiple Imputation (DMI) pipeline designed to address this challenge in temporal data set turnover rate quantifications, enabling robust downstream analysis to gain novel discoveries. To demonstrate its utility and generalizability, we applied this pipeline to two use cases: a murine cardiac temporal proteomics data set and a human plasma temporal proteomics data set, both aimed at examining protein turnover rates. This DMI pipeline significantly enhanced the detection of protein turnover rate in both data sets, and furthermore, the imputed data sets captured new representation of proteins, leading to an augmented view of biological pathways, protein complex dynamics, as well as biomarker-disease associations. Importantly, DMI exhibited superior performance in benchmark data sets compared to single imputation methods (DSI). In summary, we have demonstrated that this DMI pipeline is effective at overcoming challenges introduced by missing values in temporal proteome dynamics studies.
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- 2024
20. Time Series Anomaly Detection with CNN for Environmental Sensors in Healthcare-IoT
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Khatun, Mirza Akhi, Bhattacharya, Mangolika, Eising, Ciarán, and Dhirani, Lubna Luxmi
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Computer Science - Machine Learning ,Computer Science - Cryptography and Security ,Computer Science - Computer Vision and Pattern Recognition - Abstract
This research develops a new method to detect anomalies in time series data using Convolutional Neural Networks (CNNs) in healthcare-IoT. The proposed method creates a Distributed Denial of Service (DDoS) attack using an IoT network simulator, Cooja, which emulates environmental sensors such as temperature and humidity. CNNs detect anomalies in time series data, resulting in a 92\% accuracy in identifying possible attacks.
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- 2024
21. Efficiency of Higher Dimensional Black Holes as Particle Accelerators
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Behdadkia, Fatemeh, Mirza, Behrouz, and Tavakoli, Masoumeh
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High Energy Physics - Theory - Abstract
The center-of-mass energy of two colliding particles could be arbitrarily high in the vicinity of event horizons of the extremal Myers-Perry black holes if the angular momentum of colliding particles is fine-tuned to the critical values. We investigate the maximum efficiency of two colliding particles in four and six dimensions. The efficiency of collision for two particles near the four-dimensional Kerr black holes is 130 %. We show that the efficiency increases to 145 % for collision in six dimensions. We also show that the region for the polar angle in which the particle can reach the high energy is larger when the dimension of space-time increases.
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- 2024
- Full Text
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22. ALLaM: Large Language Models for Arabic and English
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Bari, M Saiful, Alnumay, Yazeed, Alzahrani, Norah A., Alotaibi, Nouf M., Alyahya, Hisham A., AlRashed, Sultan, Mirza, Faisal A., Alsubaie, Shaykhah Z., Alahmed, Hassan A., Alabduljabbar, Ghadah, Alkhathran, Raghad, Almushayqih, Yousef, Alnajim, Raneem, Alsubaihi, Salman, Mansour, Maryam Al, Alrubaian, Majed, Alammari, Ali, Alawami, Zaki, Al-Thubaity, Abdulmohsen, Abdelali, Ahmed, Kuriakose, Jeril, Abujabal, Abdalghani, Al-Twairesh, Nora, Alowisheq, Areeb, and Khan, Haidar
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Computer Science - Computation and Language ,Computer Science - Artificial Intelligence - Abstract
We present ALLaM: Arabic Large Language Model, a series of large language models to support the ecosystem of Arabic Language Technologies (ALT). ALLaM is carefully trained considering the values of language alignment and knowledge transfer at scale. Our autoregressive decoder-only architecture models demonstrate how second-language acquisition via vocabulary expansion and pretraining on a mixture of Arabic and English text can steer a model towards a new language (Arabic) without any catastrophic forgetting in the original language (English). Furthermore, we highlight the effectiveness of using parallel/translated data to aid the process of knowledge alignment between languages. Finally, we show that extensive alignment with human preferences can significantly enhance the performance of a language model compared to models of a larger scale with lower quality alignment. ALLaM achieves state-of-the-art performance in various Arabic benchmarks, including MMLU Arabic, ACVA, and Arabic Exams. Our aligned models improve both in Arabic and English from their base aligned models.
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- 2024
23. CellularLint: A Systematic Approach to Identify Inconsistent Behavior in Cellular Network Specifications
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Rahman, Mirza Masfiqur, Karim, Imtiaz, and Bertino, Elisa
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Computer Science - Cryptography and Security ,Computer Science - Artificial Intelligence ,Computer Science - Information Retrieval - Abstract
In recent years, there has been a growing focus on scrutinizing the security of cellular networks, often attributing security vulnerabilities to issues in the underlying protocol design descriptions. These protocol design specifications, typically extensive documents that are thousands of pages long, can harbor inaccuracies, underspecifications, implicit assumptions, and internal inconsistencies. In light of the evolving landscape, we introduce CellularLint--a semi-automatic framework for inconsistency detection within the standards of 4G and 5G, capitalizing on a suite of natural language processing techniques. Our proposed method uses a revamped few-shot learning mechanism on domain-adapted large language models. Pre-trained on a vast corpus of cellular network protocols, this method enables CellularLint to simultaneously detect inconsistencies at various levels of semantics and practical use cases. In doing so, CellularLint significantly advances the automated analysis of protocol specifications in a scalable fashion. In our investigation, we focused on the Non-Access Stratum (NAS) and the security specifications of 4G and 5G networks, ultimately uncovering 157 inconsistencies with 82.67% accuracy. After verification of these inconsistencies on open-source implementations and 17 commercial devices, we confirm that they indeed have a substantial impact on design decisions, potentially leading to concerns related to privacy, integrity, availability, and interoperability., Comment: Accepted at USENIX Security 24
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- 2024
24. Estimates on the stability constant for the truncated Fourier transform
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Karamehmedović, Mirza, Carøe, Martin Sæbye, and Triki, Faouzi
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Mathematics - Numerical Analysis ,Mathematics - Analysis of PDEs ,45Q05, 43A50 - Abstract
In this paper we are interested in the inverse problem of recovering a compact supported function from its truncated Fourier transform. We derive new Lipschitz stability estimates for the inversion in terms of the truncation parameter. The obtained results show that the Lipschitz constant is of order one when the truncation parameter is larger than the spatial frequency of the function, and it grows exponentially when the truncation parameter tends to zero. Finally, we present some numerical examples of reconstruction of a compactly supported function from its noisy truncated Fourier transform. The numerical illustrations validate our theoretical results.
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- 2024
25. SocialEyes: Scaling mobile eye-tracking to multi-person social settings
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Saxena, Shreshth, Visram, Areez, Lobo, Neil, Mirza, Zahid, Khan, Mehak Rafi, Pirabaharan, Biranugan, Nguyen, Alexander, and Fink, Lauren K.
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Computer Science - Human-Computer Interaction ,Computer Science - Computational Engineering, Finance, and Science ,Computer Science - Computers and Society ,Computer Science - Emerging Technologies ,I.4.8 ,J.4 ,J.5 ,C.4 ,D.2.10 - Abstract
Eye movements provide a window into human behaviour, attention, and interaction dynamics. Challenges in real-world, multi-person environments have, however, restrained eye-tracking research predominantly to single-person, in-lab settings. We developed a system to stream, record, and analyse synchronised data from multiple mobile eye-tracking devices during collective viewing experiences (e.g., concerts, films, lectures). We implemented lightweight operator interfaces for real-time-monitoring, remote-troubleshooting, and gaze-projection from individual egocentric perspectives to a common coordinate space for shared gaze analysis. We tested the system in a live concert and a film screening with 30 simultaneous viewers during each of two public events (N=60). We observe precise time-synchronisation between devices measured through recorded clock-offsets, and accurate gaze-projection in challenging dynamic scenes. Our novel analysis metrics and visualizations illustrate the potential of collective eye-tracking data for understanding collaborative behaviour and social interaction. This advancement promotes ecological validity in eye-tracking research and paves the way for innovative interactive tools., Comment: Please refer to the supplementary video illustrating the proposed approach in this paper here: https://tinyurl.com/multipersonET
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- 2024
26. Shedding More Light on Robust Classifiers under the lens of Energy-based Models
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Mirza, Mujtaba Hussain, Briglia, Maria Rosaria, Beadini, Senad, and Masi, Iacopo
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Machine Learning - Abstract
By reinterpreting a robust discriminative classifier as Energy-based Model (EBM), we offer a new take on the dynamics of adversarial training (AT). Our analysis of the energy landscape during AT reveals that untargeted attacks generate adversarial images much more in-distribution (lower energy) than the original data from the point of view of the model. Conversely, we observe the opposite for targeted attacks. On the ground of our thorough analysis, we present new theoretical and practical results that show how interpreting AT energy dynamics unlocks a better understanding: (1) AT dynamic is governed by three phases and robust overfitting occurs in the third phase with a drastic divergence between natural and adversarial energies (2) by rewriting the loss of TRadeoff-inspired Adversarial DEfense via Surrogate-loss minimization (TRADES) in terms of energies, we show that TRADES implicitly alleviates overfitting by means of aligning the natural energy with the adversarial one (3) we empirically show that all recent state-of-the-art robust classifiers are smoothing the energy landscape and we reconcile a variety of studies about understanding AT and weighting the loss function under the umbrella of EBMs. Motivated by rigorous evidence, we propose Weighted Energy Adversarial Training (WEAT), a novel sample weighting scheme that yields robust accuracy matching the state-of-the-art on multiple benchmarks such as CIFAR-10 and SVHN and going beyond in CIFAR-100 and Tiny-ImageNet. We further show that robust classifiers vary in the intensity and quality of their generative capabilities, and offer a simple method to push this capability, reaching a remarkable Inception Score (IS) and FID using a robust classifier without training for generative modeling. The code to reproduce our results is available at http://github.com/OmnAI-Lab/Robust-Classifiers-under-the-lens-of-EBM/ ., Comment: Accepted at European Conference on Computer Vision (ECCV) 2024
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- 2024
27. Code Hallucination
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Rahman, Mirza Masfiqur and Kundu, Ashish
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Computer Science - Artificial Intelligence ,Computer Science - Software Engineering - Abstract
Generative models such as large language models are extensively used as code copilots and for whole program generation. However, the programs they generate often have questionable correctness, authenticity and reliability in terms of integration as they might not follow the user requirements, provide incorrect and/or nonsensical outputs, or even contain semantic/syntactic errors - overall known as LLM hallucination. In this work, we present several types of code hallucination. We have generated such hallucinated code manually using large language models. We also present a technique - HallTrigger, in order to demonstrate efficient ways of generating arbitrary code hallucination. Our method leverages 3 different dynamic attributes of LLMs to craft prompts that can successfully trigger hallucinations from models without the need to access model architecture or parameters. Results from popular blackbox models suggest that HallTrigger is indeed effective and the pervasive LLM hallucination have sheer impact on software development.
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- 2024
28. The role of initial system-environment correlations in the accuracies of parameters within spin-spin model
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Mirza, Ali Raza and Al-Khalili, Jim
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Quantum Physics - Abstract
We investigate the effect of initial system-environment correlations to improve the estimation of environment parameters. By employing various physical situations of interest, we present results for the environment temperature and system-environment coupling strength. We consider the spin-spin model whereby a probe (a small controllable quantum system) interacts with a bath of quantum spins and attains a thermal equilibrium state. A projective measurement is then performed to prepare the initial state and allow it to evolve unitarily. The properties of the environment are imprinted upon the dynamics of the probe. The reduced density matrix of the probe state contains a modified decoherence factor and dissipation. This additional factor acts in such a way to improve the estimation of the environment parameters, as quantified by the quantum Fisher information (QFI). In the temperature estimation case, our results are promising as one can improve the precision of the estimates by orders of magnitude by incorporating the effect of initial correlations. The precision increases in the strong coupling regime even if the nearest neighbours' interaction is taken into account. In the case of coupling strength, interestingly the accuracy was found to be continuously increasing in both with and without correlations cases. More importantly, one can see the noticeable role of correlations in improving precision, especially at low temperatures., Comment: Comments Welcome. arXiv admin note: text overlap with arXiv:1808.04988 by other authors
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- 2024
29. Geophysical Observations of the 24 September 2023 OSIRIS-REx Sample Return Capsule Re-Entry
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Silber, Elizabeth A., Bowman, Daniel C., Carr, Chris G., Eisenberg, David P., Elbing, Brian R., Fernando, Benjamin, Garcés, Milton A., Haaser, Robert, Krishnamoorthy, Siddharth, Langston, Charles A., Nishikawa, Yasuhiro, Webster, Jeremy, Anderson, Jacob F., Arrowsmith, Stephen, Bazargan, Sonia, Beardslee, Luke, Beck, Brant, Bishop, Jordan W., Blom, Philip, Bracht, Grant, Chichester, David L., Christe, Anthony, Clarke, Jacob, Cummins, Kenneth, Cutts, James, Danielson, Lisa, Donahue, Carly, Eack, Kenneth, Fleigle, Michael, Fox, Douglas, Goel, Ashish, Green, David, Hasumi, Yuta, Hayward, Chris, Hicks, Dan, Hix, Jay, Horton, Stephen, Hough, Emalee, Huber, David P., Hunt, Madeline A., Inman, Jennifer, Islam, S. M. Ariful, Izraelevitz, Jacob, Jacob, Jamey D., Johnson, James, KC, Real J., Komjathy, Attila, Lam, Eric, LaPierre, Justin, Lewis, Kevin, Lewis, Richard D., Liu, Patrick, Martire, Léo, McCleary, Meaghan, McGhee, Elisa A., Mitra, Ipsita, Nag, Amitabh, Giraldo, Luis Ocampo, Pearson, Karen, Plaisir, Mathieu, Popenhagen, Sarah K., Rassoul, Hamid, Giannone, Miro Ronac, Samnani, Mirza, Schmerr, Nicholas, Spillman, Kate, Srinivas, Girish, Takazawa, Samuel K., Tempert, Alex, Turley, Reagan, Van Beek, Cory, Viens, Loïc, Walsh, Owen A., Weinstein, Nathan, White, Robert, Williams, Brian, Wilson, Trevor C., Wyckoff, Shirin, Yamamoto, Masa-yuki, Yap, Zachary, Yoshiyama, Tyler, and Zeiler, Cleat
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Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics ,Physics - Geophysics - Abstract
Sample Return Capsules (SRCs) entering Earth's atmosphere at hypervelocity from interplanetary space are a valuable resource for studying meteor phenomena. The 24 September 2023 arrival of the OSIRIS-REx (Origins, Spectral Interpretation, Resource Identification, and Security-Regolith Explorer) SRC provided an unprecedented chance for geophysical observations of a well-characterized source with known parameters, including timing and trajectory. A collaborative effort involving researchers from 16 institutions executed a carefully planned geophysical observational campaign at strategically chosen locations, deploying over 400 ground-based sensors encompassing infrasound, seismic, distributed acoustic sensing (DAS), and GPS technologies. Additionally, balloons equipped with infrasound sensors were launched to capture signals at higher altitudes. This campaign (the largest of its kind so far) yielded a wealth of invaluable data anticipated to fuel scientific inquiry for years to come. The success of the observational campaign is evidenced by the near-universal detection of signals across instruments, both proximal and distal. This paper presents a comprehensive overview of the collective scientific effort, field deployment, and preliminary findings. The early findings have the potential to inform future space missions and terrestrial campaigns, contributing to our understanding of meteoroid interactions with planetary atmospheres. Furthermore, the dataset collected during this campaign will improve entry and propagation models as well as augment the study of atmospheric dynamics and shock phenomena generated by meteoroids and similar sources., Comment: 87 pages, 14 figures
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- 2024
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30. Photon routing in disordered chiral waveguide QED ladders: Interplay between photonic localization and collective atomic effects
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Amgain, Nishan and Mirza, Imran M.
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Quantum Physics - Abstract
In recent years, photon routing has garnered considerable research activity due to its key applications in quantum networking and optical communications. This paper studies the single photon routing scheme in many-emitter disordered chiral waveguide quantum electrodynamics (wQED) ladders. The wQED ladder consists of two one-dimensional lossless waveguides simultaneously and chirally coupled with a chain of dipole-dipole interacting two-level quantum emitters (QEs) or atoms. In particular, we analyze how a departure from the periodic placement of the QEs due to temperature-induced position disorder can impact the routing probability. This involves analyzing how the interplay between the collective atomic effects originating from the dipole-dipole interaction and disorder in the atomic location leading to single-photon localization can change the routing probabilities. As for some key results, we find that the routing probability exhibits a considerable improvement (more than $90\%$ value) for periodic and disordered wQED ladders when considering lattices consisting of twenty QEs. This robustness of collective effects against spontaneous emission loss and weak disorders is further confirmed by examining the routing efficiency and localization length for up to twenty QE chains. These results may find applications in quantum networking and distributed quantum computing under the realistic conditions of imperfect emitter trappings., Comment: 10 pages, 6 figures
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- 2024
31. Using graph neural networks to reconstruct charged pion showers in the CMS High Granularity Calorimeter
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Aamir, M., Acar, B., Adamov, G., Adams, T., Adloff, C., Afanasiev, S., Agrawal, C., Ahmad, A., Ahmed, H. A., Akbar, S., Akchurin, N., Akgul, B., Akgun, B., Akpinar, R. O., Aktas, E., AlKadhim, A., Alexakhin, V., Alimena, J., Alison, J., Alpana, A., Alshehri, W., Dominguez, P. Alvarez, Alyari, M., Amendola, C., Amir, R. B., Andersen, S. B., Andreev, Y., Antoszczuk, P. D., Aras, U., Ardila, L., Aspell, P., Avila, M., Awad, I., Aydilek, O., Azimi, Z., Pretel, A. Aznar, Bach, O. A., Bainbridge, R., Bakshi, A., Bam, B., Banerjee, S., Barney, D., Bayraktar, O., Beaudette, F., Beaujean, F., Becheva, E., Behera, P. K., Belloni, A., Bergauer, T., Besancon, M., Bylund, O. Bessidskaia, Bhatt, L., Bhowmil, D., Blekman, F., Blinov, P., Bloch, P., Bodek, A., Boger, a., Bonnemaison, A., Bouyjou, F., Brennan, L., Brondolin, E., Brusamolino, A., Bubanja, I., Perraguin, A. Buchot, Bunin, P., Misura, A. Burazin, Butler-nalin, A., Cakir, A., Callier, S., Campbell, S., Canderan, K., Cankocak, K., Cappati, A., Caregari, S., Carron, S., Carty, C., Cauchois, A., Ceard, L., Cerci, S., Chang, P. J., Chatterjee, R. M., Chatterjee, S., Chattopadhyay, P., Chatzistavrou, T., Chaudhary, M. S., Chauhan, A., Chen, J. A., Chen, J., Chen, Y., Cheng, K., Cheung, H., Chhikara, J., Chiron, A., Chiusi, M., Chokheli, D., Chudasama, R., Clement, E., Mendez, S. Coco, Coko, D., Coskun, K., Couderc, F., Crossman, B., Cui, Z., Cuisset, T., Cummings, G., Curtis, E. M., D'Alfonso, M., D-hler-ball, J., Dadazhanova, O., Damgov, J., Das, I., DasGupta, S., Dauncey, P., Mendes, A. David Tinoco, Davies, G., Davignon, O., DeLa, P. deBarbaroC., DeSilva, M., DeWit, A., Debbins, P., Defranchis, M. M., Delagnes, E., Devouge, P., Dewangan, C., DiGuglielmo, G., Diehl, L., Dilsiz, K., Dincer, G. G., Dittmann, J., Dragicevic, M., Du, D., Dubinchik, B., Dugad, S., Dulucq, F., Dumanoglu, I., Duran, B., Dutta, S., Dutta, V., Dychkant, A., Dünser, M., Edberg, T., Ehle, I. T., Berni, A. El, Elias, F., Eno, S. C., Erdogan, E. N., Erkmen, B., Ershov, Y., Ertorer, E. Y., Extier, S., Eychenne, L., Fedar, Y. E., Fedi, G., De Almeida, J. P. Figueiredo De De Sá Sousa, Alves, B. A. Fontana Santos Santos, Frahm, E., Francis, K., Freeman, J., French, T., Gaede, F., Gandhi, P. K., Ganjour, S., Garcia-Bellido, A., Gastaldi, F., Gazi, L., Gecse, Z., Gerwig, H., Gevin, O., Ghosh, S., Gill, K., Gleyzer, S., Godinovic, N., Goek, M., Goettlicher, P., Goff, R., Golunov, A., Gonultas, B., Martínez, J. D. González, Gorbounov, N., Gouskos, L., Gray, A., Gray, L., Grieco, C., Groenroos, S., Groner, D., Gruber, A., Grummer, A., Grönroos, S., Guilloux, F., Guler, Y., Gungordu, A. D., Guo, J., Guo, K., Guler, E. Gurpinar, Gutti, H. K., Guvenli, A. A., Gülmez, E., Hacisahinoglu, B., Halkin, Y., Machado, G. Hamilton Ilha, Hare, H. S., Hatakeyama, K., Heering, A. H., Hegde, V., Heintz, U., Hinton, N., Hinzmann, A., Hirschauer, J., Hitlin, D., Hos, İ., Hou, B., Hou, X., Howard, A., Howe, C., Hsieh, H., Hsu, T., Hua, H., Hummer, F., Imran, M., Incandela, J., Iren, E., Isildak, B., Jackson, P. S., Jackson, W. J., Jain, S., Jana, P., Jaroslavceva, J., Jena, S., Jige, A., Jordano, P. P., Joshi, U., Kaadze, K., Kafizov, A., Kalipoliti, L., Tharayil, A. Kallil, Kaluzinska, O., Kamble, S., Kaminskiy, A., Kanemura, M., Kanso, H., Kao, Y., Kapic, A., Kapsiak, C., Karjavine, V., Karmakar, S., Karneyeu, A., Kaya, M., Topaksu, A. Kayis, Kaynak, B., Kazhykarim, Y., Khan, F. A., Khudiakov, A., Kieseler, J., Kim, R. S., Klijnsma, T., Kloiber, E. G., Klute, M., Kocak, Z., Kodali, K. R., Koetz, K., Kolberg, T., Kolcu, O. B., Komaragiri, J. R., Komm, M., Kopsalis, I., Krause, H. A., Krawczyk, M. A., Vinayakam, T. R. Krishnaswamy, Kristiansen, K., Kristic, A., Krohn, M., Kronheim, B., Krüger, K., Kudtarkar, C., Kulis, S., Kumar, M., Kumar, N., Kumar, S., Verma, R. Kumar, Kunori, S., Kunts, A., Kuo, C., Kurenkov, A., Kuryatkov, V., Kyre, S., Ladenson, J., Lamichhane, K., Landsberg, G., Langford, J., Laudrain, A., Laughlin, R., Lawhorn, J., Dortz, O. Le, Lee, S. W., Lektauers, A., Lelas, D., Leon, M., Levchuk, L., Li, A. J., Li, J., Li, Y., Liang, Z., Liao, H., Lin, K., Lin, W., Lin, Z., Lincoln, D., Linssen, L., Litomin, A., Liu, G., Liu, Y., Lobanov, A., Lohezic, V., Loiseau, T., Lu, C., Lu, R., Lu, S. Y., Lukens, P., Mackenzie, M., Magnan, A., Magniette, F., Mahjoub, A., Mahon, D., Majumder, G., Makarenko, V., Malakhov, A., Malgeri, L., Mallios, S., Mandloi, C., Mankel, A., Mannelli, M., Mans, J., Mantilla, C., Martinez, G., Massa, C., Masterson, P., Matthewman, M., Matveev, V., Mayekar, S., Mazlov, I., Mehta, A., Mestvirishvili, A., Miao, Y., Milella, G., Mirza, I. R., Mitra, P., Moccia, S., Mohanty, G. B., Monti, F., Moortgat, F., Murthy, S., Music, J., Musienko, Y., Nabili, S., Nayak, S., Nelson, J. W., Nema, A., Neutelings, I., Niedziela, J., Nikitenko, A., Noonan, D., Noy, M., Nurdan, K., Obraztsov, S., Ochando, C., Ogul, H., Olsson, J., Onel, Y., Ozkorucuklu, S., Paganis, E., Palit, P., Pan, R., Pandey, S., Pantaleo, F., Papageorgakis, C., Paramesvaran, S., Paranjpe, M. M., Parolia, S., Parsons, A. G., Parygin, P., Paulini, M., Paus, C., Peñaló, K., Pedro, K., Pekic, V., Peltola, T., Peng, B., Perego, A., Perini, D., Petrilli, A., Pham, H., Pierre-Emile, T., Podem, S. K., Popov, V., Portales, L., Potok, O., Pradeep, P. B., Pramanik, R., Prosper, H., Prvan, M., Qasim, S. R., Qu, H., Quast, T., Trivino, A. Quiroga, Rabour, L., Raicevic, N., Rajpoot, H., Rao, M. A., Rapacz, K., Redjeb, W., Reinecke, M., Revering, M., Roberts, A., Rohlf, J., Rosado, P., Rose, A., Rothman, S., Rout, P. K., Rovere, M., Rumerio, P., Rusack, R., Rygaard, L., Ryjov, V., Sadivnycha, S., Sahin, M. Ö., Sakarya, U., Salerno, R., Saradhy, R., Saraf, M., Sarbandi, K., Sarkisla, M. A., Satyshev, I., Saud, N., Sauvan, J., Schindler, G., Schmidt, A., Schmidt, I., Schmitt, M. H., Sculac, A., Sculac, T., Sedelnikov, A., Seez, C., Sefkow, F., Selivanova, D., Selvaggi, M., Sergeychik, V., Sert, H., Shahid, M., Sharma, P., Sharma, R., Sharma, S., Shelake, M., Shenai, A., Shih, C. W., Shinde, R., Shmygol, D., Shukla, R., Sicking, E., Silva, P., Simsek, C., Simsek, E., Sirasva, B. K., Sirois, Y., Song, S., Song, Y., Soudais, G., Sriram, S., StJacques, R. R., StahlLeiton, A. G., Steen, A., Stein, J., Strait, J., Strobbe, N., Su, X., Sukhov, E., Suleiman, A., Cerci, D. Sunar, Suryadevara, P., Swain, K., Syal, C., Tali, B., Tanay, K., Tang, W., Tanvir, A., Tao, J., Tarabini, A., Tatli, T., Taylor, R., Taysi, Z. C., Teafoe, G., Tee, C. Z., Terrill, W., Thienpont, D., Thomas, R., Titov, M., Todd, C., Todd, E., Toms, M., Tosun, A., Troska, J., Tsai, L., Tsamalaidze, Z., Tsionou, D., Tsipolitis, G., Tsirigoti, M., Tu, R., Polat, S. N. Tural, Undleeb, S., Usai, E., Uslan, E., Ustinov, V., Vernazza, E., Viahin, O., Viazlo, O., Vichoudis, P., Vijay, A., Virdee, T., Voirin, E., Vojinovic, M., Voytishin, N., Vámi, T. Á., Wade, A., Walter, D., Wang, C., Wang, F., Wang, J., Wang, K., Wang, X., Wang, Y., Wang, Z., Wanlin, E., Wayne, M., Wetzel, J., Whitbeck, A., Wickwire, R., Wilmot, D., Wilson, J., Wu, H., Xiao, M., Yang, J., Yazici, B., Ye, Y., Yetkin, T., Yi, R., Yohay, R., Yu, T., Yuan, C., Yuan, X., Yuksel, O., YushmanoV, I., Yusuff, I., Zabi, A., Zareckis, D., Zarubin, A., Zehetner, P., Zghiche, A., Zhang, C., Zhang, D., Zhang, H., Zhang, J., Zhang, Z., Zhao, X., Zhong, J., Zhou, Y., and Zorbilmez, Ç.
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Physics - Instrumentation and Detectors ,High Energy Physics - Experiment ,Physics - Data Analysis, Statistics and Probability - Abstract
A novel method to reconstruct the energy of hadronic showers in the CMS High Granularity Calorimeter (HGCAL) is presented. The HGCAL is a sampling calorimeter with very fine transverse and longitudinal granularity. The active media are silicon sensors and scintillator tiles readout by SiPMs and the absorbers are a combination of lead and Cu/CuW in the electromagnetic section, and steel in the hadronic section. The shower reconstruction method is based on graph neural networks and it makes use of a dynamic reduction network architecture. It is shown that the algorithm is able to capture and mitigate the main effects that normally hinder the reconstruction of hadronic showers using classical reconstruction methods, by compensating for fluctuations in the multiplicity, energy, and spatial distributions of the shower's constituents. The performance of the algorithm is evaluated using test beam data collected in 2018 prototype of the CMS HGCAL accompanied by a section of the CALICE AHCAL prototype. The capability of the method to mitigate the impact of energy leakage from the calorimeter is also demonstrated., Comment: Prepared for submission to JINST
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- 2024
32. Comparison Visual Instruction Tuning
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Lin, Wei, Mirza, Muhammad Jehanzeb, Doveh, Sivan, Feris, Rogerio, Giryes, Raja, Hochreiter, Sepp, and Karlinsky, Leonid
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Comparing two images in terms of Commonalities and Differences (CaD) is a fundamental human capability that forms the basis of advanced visual reasoning and interpretation. It is essential for the generation of detailed and contextually relevant descriptions, performing comparative analysis, novelty detection, and making informed decisions based on visual data. However, surprisingly, little attention has been given to these fundamental concepts in the best current mimic of human visual intelligence - Large Multimodal Models (LMMs). We develop and contribute a new two-phase approach CaD-VI for collecting synthetic visual instructions, together with an instruction-following dataset CaD-Inst containing 349K image pairs with CaD instructions collected using CaD-VI. Our approach significantly improves the CaD spotting capabilities in LMMs, advancing the SOTA on a diverse set of related tasks by up to 17.5%. It is also complementary to existing difference-only instruction datasets, allowing automatic targeted refinement of those resources increasing their effectiveness for CaD tuning by up to 10%. Additionally, we propose an evaluation benchmark with 7.5K open-ended QAs to assess the CaD understanding abilities of LMMs., Comment: Project page: https://wlin-at.github.io/cad_vi ; Huggingface dataset repo: https://huggingface.co/datasets/wlin21at/CaD-Inst
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- 2024
33. Data-driven Thermal Modeling for Electrically Excited Synchronous Motors -- A Supervised Machine Learning Approach
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Tatari, Farzaneh, Trapp, Davis, Schneider, Jason, and Aligoudarzi, Mohsen Mirza
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Electrical Engineering and Systems Science - Systems and Control - Abstract
This paper proposes a data-driven supervised machine learning (ML) for online thermal modeling of electrically excited synchronous motors (EESMs). EESMs are desired for EVs due to their high performance, efficiency, and durability at a relatively low cost. Therefore, obtaining precise EESM temperature estimations are significantly important, because online accurate temperature estimation can lead to EESM performance improvement and guaranteeing its safety and reliability. In this study, in addition to the default inputs' data, EESM losses data is leveraged to improve the performance of the proposed ML approach for thermal modeling. Exponentially weighted moving averages and standard deviations of the inputs are also incorporated in the learning process to consider the memory effect for modeling a dynamical thermal model. Using the experimental data of an EESM prototype, the performance of ordinary least squares (OLS) method is evaluated through a complete training, testing and cross-validation process. Finally, simulation results will provide the key performance metrics of OLS for EESM thermal modeling.
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- 2024
34. ConMe: Rethinking Evaluation of Compositional Reasoning for Modern VLMs
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Huang, Irene, Lin, Wei, Mirza, M. Jehanzeb, Hansen, Jacob A., Doveh, Sivan, Butoi, Victor Ion, Herzig, Roei, Arbelle, Assaf, Kuehne, Hilde, Darrell, Trevor, Gan, Chuang, Oliva, Aude, Feris, Rogerio, and Karlinsky, Leonid
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Compositional Reasoning (CR) entails grasping the significance of attributes, relations, and word order. Recent Vision-Language Models (VLMs), comprising a visual encoder and a Large Language Model (LLM) decoder, have demonstrated remarkable proficiency in such reasoning tasks. This prompts a crucial question: have VLMs effectively tackled the CR challenge? We conjecture that existing CR benchmarks may not adequately push the boundaries of modern VLMs due to the reliance on an LLM-only negative text generation pipeline. Consequently, the negatives produced either appear as outliers from the natural language distribution learned by VLMs' LLM decoders or as improbable within the corresponding image context. To address these limitations, we introduce ConMe -- a compositional reasoning benchmark and a novel data generation pipeline leveraging VLMs to produce `hard CR Q&A'. Through a new concept of VLMs conversing with each other to collaboratively expose their weaknesses, our pipeline autonomously generates, evaluates, and selects challenging compositional reasoning questions, establishing a robust CR benchmark, also subsequently validated manually. Our benchmark provokes a noteworthy, up to 33%, decrease in CR performance compared to preceding benchmarks, reinstating the CR challenge even for state-of-the-art VLMs., Comment: NeurIPS 2024 Camera Ready
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- 2024
35. Particle Multi-Axis Transformer for Jet Tagging
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Usman, Muhammad, Shahid, M Husnain, Ejaz, Maheen, Hani, Ummay, Fatima, Nayab, Khan, Abdul Rehman, Khan, Asifullah, and Mirza, Nasir Majid
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High Energy Physics - Phenomenology ,Computer Science - Machine Learning - Abstract
Jet tagging is an essential categorization problem in high energy physics. In recent times, Deep Learning has not only risen to the challenge of jet tagging but also significantly improved its performance. In this article, we proposed an idea of a new architecture, Particle Multi-Axis transformer (ParMAT) which is a modified version of Particle transformer (ParT). ParMAT contains local and global spatial interactions within a single unit which improves its ability to handle various input lengths. We trained our model on JETCLASS, a publicly available large dataset that contains 100M jets of 10 different classes of particles. By integrating a parallel attention mechanism and pairwise interactions of particles in the attention mechanism, ParMAT achieves robustness and higher accuracy over the ParT and ParticleNet. The scalability of the model to huge datasets and its ability to automatically extract essential features demonstrate its potential for enhancing jet tagging.
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- 2024
36. A class of Taub-NUT metrics in the presence of a scalar field
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Derekeh, Ali, Mirza, Behrouz, Heidari, Pouya, Sadeghi, Fatemeh, and Bahani, Reza
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General Relativity and Quantum Cosmology - Abstract
We derive a class of Taub-NUT metrics in the presence of a scalar field (TNS) by applying the Ehlers transformation on the exact solutions that was recently introduced in arXiv: 2307.09328 and arXiv: 2307.13588. Furthermore, we investigate the effective potential, geodesics, topological charge, and quasinormal modes (QNMs) for the obtained TNS metrics. We also use conformal transformations to generate a new class of exact solutions of the Einstein-conformal-scalar theory by using the obtained TNS solutions as seed metrics. Finally we compare QNMs of the class of exact solutions.
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- 2024
37. Fairness-Optimized Synthetic EHR Generation for Arbitrary Downstream Predictive Tasks
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Tarek, Mirza Farhan Bin, Poulain, Raphael, and Beheshti, Rahmatollah
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Computer Science - Machine Learning - Abstract
Among various aspects of ensuring the responsible design of AI tools for healthcare applications, addressing fairness concerns has been a key focus area. Specifically, given the wide spread of electronic health record (EHR) data and their huge potential to inform a wide range of clinical decision support tasks, improving fairness in this category of health AI tools is of key importance. While such a broad problem (mitigating fairness in EHR-based AI models) has been tackled using various methods, task- and model-agnostic methods are noticeably rare. In this study, we aimed to target this gap by presenting a new pipeline that generates synthetic EHR data, which is not only consistent with (faithful to) the real EHR data but also can reduce the fairness concerns (defined by the end-user) in the downstream tasks, when combined with the real data. We demonstrate the effectiveness of our proposed pipeline across various downstream tasks and two different EHR datasets. Our proposed pipeline can add a widely applicable and complementary tool to the existing toolbox of methods to address fairness in health AI applications, such as those modifying the design of a downstream model. The codebase for our project is available at https://github.com/healthylaife/FairSynth
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- 2024
38. GAGGED Media; violation of free speech in India under the garb of protecting state interest
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Mirza, Areena Zainub and Johri, S.M.
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- 2019
39. Response of organic practices, mulching and plant growth regulators on growth, yield and quality of papaya (Carica papaya L) cv. Taiwan Red Lady
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Mirza, Anis, Jakhar, Rahul, and Singh, Jatinder
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- 2019
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40. Interventions for Health Promotion and Obesity Prevention for Children and Adolescents with Developmental Disabilities: A Systematic Review
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Mansha Mirza, Jasmine P. Brown-Hollie, Yolanda Suarez-Balcazar, Deborah Parra-Medina, Sarah Camillone, Weiwen Zeng, Estefania Garcia-Gomez, Nazanin Heydarian, and Sandy Magaña
- Abstract
This systematic review evaluated interventions and relevant outcomes for health promotion and obesity prevention among children and adolescents with developmental disabilities (DD). Twenty-one studies including randomized control trials (n= 9) and quasi-experimental studies (n=12) published between 2010 and 2021 met inclusion criteria related to participant characteristics, intervention type, and child obesity-related outcomes. Five types of intervention programs were identified: aerobic and strength training, sport-based physical activity, aquatic exercise, active video gaming, and diet and lifestyle. Whereas analysis of intervention outcomes, efficacy, and study rigor showed mixed results and weak evidence of effective interventions, this review identified gaps in the literature, promising strategies for addressing obesity in children with DD, and implications for practice and future research.
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- 2024
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41. Burden of Chronic Conditions among Patients from Free Clinics: A Retrospective Chart Review of 2015
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Rahman, Shams, Mirza, Abu-Sayeef, Stenback, Jennifer, Green, Shikerria, Mayers, Yeshuwa, Iranmanesh, Elhaam, Pribish, Abby, Islam, Saneeya, and Woodard, Laurie
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- 2018
- Full Text
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42. PIGMENT ANALYSIS OF RHODOBACTER SPHAEROIDES IN PHOTOBIOMODULATION
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Mirza, Sanaz
- Abstract
Photobiomodulation (PBM), commonly known as red-light therapy, involves theexposure of light onto tissues for increased cellular activity. Examples of PBM include light-induced stimulation of damaged tissue, reduced inflammation, and increased metabolic activity(De Freitas, F.L, Hamblin, R.M. 2017). Past research proposes that light stimulation ofmitochondria yields increased ATP production when supplemented with photosynthetic pigmentsand light. Other studies have suggested the uptake of photosynthetic pigments into mammaliantissues as a mechanism for increased light harvesting. While PBM therapy is still underinvestigation, similarities between energy harvesting in photobiomodulation and photosynthesisare proposed explanations for increased metabolic activity. Photosynthetic bacteria andeukaryotic mitochondria potentially have similar energy-harvesting mechanisms (Alberts, B. et.al. 2002.), thus supplementing a eukaryotic organism, such as yeast, with bacterial pigmentscould provide insights to improved cell repair in humans. This project focuses on isolatingbacterial pigments under various wavelengths and intensities of light to enhance yeast growth.Bacterial pigments were grown under white light and subsequently implemented into a culture ofyeast. The yeast were grown in front of a supercontinuum light source to observe light absorptionas a function of wavelength. The overarching hypothesis of this work is that supplementation ofyeast with bacterial pigments could expedite yeast growth rate through stimulation of theelectron transport chain and increased ATP production. The results could offer a greaterunderstanding of PBM therapy for possible noninvasive medical applications, improvements inhealing, and supplementation of photobiomodulation with bacterial pigments as a promisingavenue of medical research.
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- 2024
43. Safety of the PCSK9 inhibitor alirocumab: insights from 47 296 patient-years of observation
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Goodman, Shaun G, Steg, Philippe Gabriel, Szarek, Michael, Bhatt, Deepak L, Bittner, Vera A, Diaz, Rafael, Harrington, Robert A, Jukema, J Wouter, White, Harvey D, Zeiher, Andreas M, Manvelian, Garen, Pordy, Robert, Poulouin, Yann, Stipek, Wanda, Garon, Genevieve, Schwartz, Gregory G, Steg, Ph Gabriel, Tricoci, Pierluigi, Roe, Matthew T, Mahaffey, Kenneth W, Edelberg, Jay M, Hanotin, Corinne, Lecorps, Guillaume, Moryusef, Angèle, Sasiela, William J, Tamby, Jean-François, Aylward, Philip E, Drexel, Heinz, Sinnaeve, Peter, Dilic, Mirza, Lopes, Renato D, Gotcheva, Nina N, Prieto, Juan-Carlos, Yong, Huo, López-Jaramillo, Patricio, Pećin, Ivan, Reiner, Zeljko, Ostadal, Petr, Poulsen, Steen Hvitfeldt, Viigimaa, Margus, Nieminen, Markku S, Danchin, Nicolas, Chumburidze, Vakhtang, Marx, Nikolaus, Liberopoulos, Evangelos, Valdovinos, Pablo Carlos Montenegro, Tse, Hung-Fat, Kiss, Robert Gabor, Xavier, Denis, Zahger, Doron, Valgimigli, Marco, Kimura, Takeshi, Kim, Hyo Soo, Kim, Sang-Hyun, Erglis, Andrejs, Laucevicius, Aleksandras, Kedev, Sasko, Yusoff, Khalid, López, Gabriel Arturo Ramos, Alings, Marco, Halvorsen, Sigrun, Flores, Roger M Correa, Sy, Rody G, Budaj, Andrzej, Morais, Joao, Dorobantu, Maria, Karpov, Yuri, Ristic, Arsen D, Chua, Terrance, Murin, Jan, Fras, Zlatko, Dalby, Anthony J, Tuñón, José, de Silva, H Asita, Hagström, Emil, Landmesser, Ulf, Chiang, Chern-En, Sritara, Piyamitr, Guneri, Sema, Parkhomenko, Alexander, Ray, Kausik K, Moriarty, Patrick M, Chaitman, Bernard, Kelsey, Sheryl F, Olsson, Anders G, and Rouleau, Jean-Lucien
- Subjects
Biomedical and Clinical Sciences ,Clinical Sciences ,Clinical Trials and Supportive Activities ,Patient Safety ,Clinical Research ,6.1 Pharmaceuticals ,Good Health and Well Being ,Humans ,Antibodies ,Monoclonal ,Humanized ,Anticholesteremic Agents ,Biomarkers ,Cardiovascular Diseases ,Cholesterol ,LDL ,Dyslipidemias ,PCSK9 Inhibitors ,Proprotein Convertase 9 ,Randomized Controlled Trials as Topic ,Serine Proteinase Inhibitors ,Time Factors ,Treatment Outcome ,ODYSSEY OUTCOMES Investigators ,Alirocumab ,Cholesterol ,PCSK9 ,Safety ,Cardiorespiratory Medicine and Haematology ,Pharmacology and Pharmaceutical Sciences ,Cardiovascular medicine and haematology ,Pharmacology and pharmaceutical sciences - Abstract
The ODYSSEY OUTCOMES trial, comprising over 47 000 patient-years of placebo-controlled observation, demonstrated important reductions in the risk of recurrent ischaemic cardiovascular events with the monoclonal antibody to proprotein convertase subtilisin/kexin type 9 alirocumab, as well as lower all-cause death. These benefits were observed in the context of substantial and persistent lowering of low-density lipoprotein cholesterol with alirocumab compared with that achieved with placebo. The safety profile of alirocumab was indistinguishable from matching placebo except for a ∼1.7% absolute increase in local injection site reactions. Further, the safety of alirocumab compared with placebo was evident in vulnerable groups identified before randomization, such as the elderly and those with diabetes mellitus, previous ischaemic stroke, or chronic kidney disease. The frequency of adverse events and laboratory-based abnormalities was generally similar to that in placebo-treated patients. Thus, alirocumab appears to be a safe and effective lipid-modifying treatment over a duration of at least 5 years.
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- 2024
44. Cascaded Group Testing
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Mirza, Waqar, Karamchandani, Nikhil, and Balachandran, Niranjan
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Computer Science - Information Theory - Abstract
In this paper, we introduce a variation of the group testing problem where each test is specified by an ordered subset of items and returns the first defective item in the specified order or returns null if there are no defectives. We refer to this as cascaded group testing and the goal is to identify a small set of $K$ defective items amongst a collection of size $N$, using as few tests as possible for perfect recovery. For the adaptive testing regime, we show that a simple scheme can find all defective items in at most $K$ tests, which is optimal. For the non-adaptive setting, we first come up with a necessary and sufficient condition for any collection of tests to be feasible for recovering all the defectives. Using this, we show that any feasible non-adaptive strategy requires at least $\Omega(K^2)$ tests. In terms of achievability, it is easy to show the existence of a feasible collection of $O(K^2 \log (N/K))$ tests. We show via carefully constructed explicit designs that one can do significantly better for constant $K$. While the cases $K = 1, 2$ are straightforward, the case $K=3$ is already non-trivial and we come up with an iterative design that is asymptotically optimal and requires $\Theta(\log \log N)$ tests. Note that this is in contrast to standard binary group testing, where at least $\Omega(\log N)$ tests are required. For constant $K \ge 3$, our iterative design requires only poly$(\log \log N)$ tests.
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- 2024
45. Charge Transport and Defects in Sulfur-Deficient Chalcogenide Perovskite BaZrS$_3$
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Aggarwal, Garima, Mirza, Adeem Saeed, Riva, Stefania, Comparotto, Corrado, Frost, Robert J. W., Mukherjee, Soham, Morales-Masis, Monica, Rensmo, Håkan, and Scragg, Jonathan Staaf
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Condensed Matter - Materials Science - Abstract
Exploring the conduction mechanism in the chalcogenide perovskite BaZrS$_3$ is of significant interest due to its potential suitability as a top absorber layer in silicon-based tandem solar cells and other optoelectronic applications. Theoretical and experimental studies anticipate native ambipolar doping in BaZrS$_3$, although experimental validation remains limited. This study reveals a transition from highly insulating behavior to n-type conductivity in BaZrS$_3$ through annealing in an S-poor environment. BaZrS$_3$ thin films are synthesized $\textit{via}$ a two step process: co-sputtering of Ba-Zr followed by sulfurization at 600 $^{\circ}$C, and subsequent annealing in high vacuum. UV-Vis measurement reveal a red-shift in the absorption edge concurrent with sample color darkening after annealing. The increase in defect density with vacuum annealing, coupled with low activation energy and n-type character of defects, strongly suggests that sulfur vacancies (V$_{\mathrm{S}}$) are responsible, in agreement with theoretical predictions. The shift of the Fermi level towards conduction band minimum, quantified by Hard X-ray Photoelectron Spectroscopy (Ga K$\alpha$, 9.25 keV), further corroborates the induced n-type of conductivity in annealed samples. Our findings indicate that vacuum annealing induces V$_{\mathrm{S}}$ defects that dominate the charge transport, thereby making BaZrS$_3$ an n-type semiconductor under S-poor conditions. This study offers crucial insights into understanding the defect properties of BaZrS$_3$, facilitating further improvements for its use in solar cell applications., Comment: 19 pages (single column), 6 figures in main manuscript and 8 figures in supplementary information
- Published
- 2024
46. Nonperturbative thermodynamic extrinsic curvature of the anyon gas
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Kachi, Mahnaz Tavakoli, Mirza, Behrouz, and Hashemi, Fatemeh Sadat
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Condensed Matter - Statistical Mechanics - Abstract
Thermodynamic extrinsic curvature is a new mathematical tool in thermodynamic geometry. By using the thermodynamic extrinsic curvature, one may obtain a more complete geometric representation of the critical phenomena and thermodynamics. We introduce nonperturbative thermodynamic extrinsic curvature of an ideal two dimensional gas of anyons. Using extrinsic curvature, we find new fixed points in nonperturbative thermodynamics of the anyon gas that particles behave as semions. Here, we investigate the critical behavior of thermodynamic extrinsic curvature of two-dimensional Kagome Ising model near the critical point $ \beta_{c} =({{k_{B} T_{c}}})^{-1}$ in a constant magnetic field and show that it behaves as $ \left| {\beta- \beta_{c} } \right|^{\alpha} $ with $ \alpha=0 $, where $ \alpha $ denotes the critical exponent of the specific heat. Then, we consider the three dimensional spherical model and show that the scaling behavior is $ \left| {\beta- \beta_{c} } \right|^{\alpha} $ , where $ \alpha =-1 $. Finally, using a general argument, we show that extrinsic curvature $ K $ have two different scaling behaviors for positive and negative $ \alpha $. For $\alpha> 0$, our results indicate that $ K \sim \left|{\beta- \beta_{c} } \right|^{{\frac{1}{2}} (\alpha-2)} $. However, for $ \alpha <0$, we found a different scaling behavior, where $ K\sim \left| {\beta- \beta_{c} } \right|^{\alpha} $., Comment: 27 pages, 10 figures
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- 2024
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47. EvaNet: Elevation-Guided Flood Extent Mapping on Earth Imagery (Extended Version)
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Sami, Mirza Tanzim, Yan, Da, Adhikari, Saugat, Yuan, Lyuheng, Han, Jiao, Jiang, Zhe, Khalil, Jalal, and Zhou, Yang
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Computer Science - Computer Vision and Pattern Recognition ,Electrical Engineering and Systems Science - Image and Video Processing - Abstract
Accurate and timely mapping of flood extent from high-resolution satellite imagery plays a crucial role in disaster management such as damage assessment and relief activities. However, current state-of-the-art solutions are based on U-Net, which can-not segment the flood pixels accurately due to the ambiguous pixels (e.g., tree canopies, clouds) that prevent a direct judgement from only the spectral features. Thanks to the digital elevation model (DEM) data readily available from sources such as United States Geological Survey (USGS), this work explores the use of an elevation map to improve flood extent mapping. We propose, EvaNet, an elevation-guided segmentation model based on the encoder-decoder architecture with two novel techniques: (1) a loss function encoding the physical law of gravity that if a location is flooded (resp. dry), then its adjacent locations with a lower (resp. higher) elevation must also be flooded (resp. dry); (2) a new (de)convolution operation that integrates the elevation map by a location sensitive gating mechanism to regulate how much spectral features flow through adjacent layers. Extensive experiments show that EvaNet significantly outperforms the U-Net baselines, and works as a perfect drop-in replacement for U-Net in existing solutions to flood extent mapping., Comment: Published at the International Joint Conference on Artificial Intelligence (IJCAI, 2024)
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- 2024
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48. Stability estimates for the inverse source problem with passive measurements
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Triki, Faouzi, Linder-Steinlein, Kristoffer, and Karamehmedovic, Mirza
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Mathematics - Analysis of PDEs - Abstract
We consider the multi-frequency inverse source problem in the presence of a non-homogeneous medium using passive measurements. Precisely, we derive stability estimates for determining the source from the knowledge of only the imaginary part of the radiated field on the boundary for multiple frequencies. The proof combines a spectral decomposition with a quantification of the unique continuation of the resolvent as a holomorphic function of the frequency. The obtained results show that the inverse problem is well posed when the frequency band is larger than the spatial frequency of the source.
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- 2024
49. Into the Fog: Evaluating Robustness of Multiple Object Tracking
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Kirillova, Nadezda, Mirza, M. Jehanzeb, Bischof, Horst, and Possegger, Horst
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence - Abstract
State-of-the-art Multiple Object Tracking (MOT) approaches have shown remarkable performance when trained and evaluated on current benchmarks. However, these benchmarks primarily consist of clear weather scenarios, overlooking adverse atmospheric conditions such as fog, haze, smoke and dust. As a result, the robustness of trackers against these challenging conditions remains underexplored. To address this gap, we introduce physics-based volumetric fog simulation method for arbitrary MOT datasets, utilizing frame-by-frame monocular depth estimation and a fog formation optical model. We enhance our simulation by rendering both homogeneous and heterogeneous fog and propose to use the dark channel prior method to estimate atmospheric light, showing promising results even in night and indoor scenes. We present the leading benchmark MOTChallenge (third release) augmented with fog (smoke for indoor scenes) of various intensities and conduct a comprehensive evaluation of MOT methods, revealing their limitations under fog and fog-like challenges.
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- 2024
50. A Bayesian factor analysis model for high-dimensional microbiome count data
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Ba, Ismaïla, Turgeon, Maxime, Veniamin, Simona, Joel, Juan, Miller, Richard, Graham, Morag, Bonner, Christine, Bernstein, Charles N., Arnold, Douglas L., Bar-Or, Amit, Marrie, Ruth Ann, O'Mahony, Julia, Yeh, E. Ann, Banwell, Brenda, Waubant, Emmanuelle, Knox, Natalie, Van Domselaar, Gary, Mirza, Ali I., Armstrong, Heather, Muthukumarana, Saman, and McGregor, Kevin
- Subjects
Statistics - Methodology - Abstract
Dimension reduction techniques are among the most essential analytical tools in the analysis of high-dimensional data. Generalized principal component analysis (PCA) is an extension to standard PCA that has been widely used to identify low-dimensional features in high-dimensional discrete data, such as binary, multi-category and count data. For microbiome count data in particular, the multinomial PCA is a natural counterpart of the standard PCA. However, this technique fails to account for the excessive number of zero values, which is frequently observed in microbiome count data. To allow for sparsity, zero-inflated multivariate distributions can be used. We propose a zero-inflated probabilistic PCA model for latent factor analysis. The proposed model is a fully Bayesian factor analysis technique that is appropriate for microbiome count data analysis. In addition, we use the mean-field-type variational family to approximate the marginal likelihood and develop a classification variational approximation algorithm to fit the model. We demonstrate the efficiency of our procedure for predictions based on the latent factors and the model parameters through simulation experiments, showcasing its superiority over competing methods. This efficiency is further illustrated with two real microbiome count datasets. The method is implemented in R., Comment: 2 figures, 3 tables
- Published
- 2024
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