104 results on '"Mohamed H. Al-Agamy"'
Search Results
2. Benzo[g]quinazolines as antifungal against candidiasis: Screening, molecular docking, and QSAR investigations
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Hatem A. Abuelizz, Ahmed H. Bakheit, Mohamed H. Al-Agamy, Harunor Rashid, Gamal A.E. Mostafa, and Rashad Al-Salahi
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Anticandidal agent ,Benzo[g]quinazolines ,Candida albicans ,CYP51 ,Molecular docking ,Quantitative structure–activity relationship ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Candida albicans, an opportunistic pathogen, is the most common type of fungus and represents a substantial source of human invasive disease (nosocomial infection). This category of fungi are part of our microbiota, and given the appropriate environmental conditions, it has the potential to cause both superficial and systemic infections. There is a soaring resistance against the available anticandidal agents. The purpose of this research is to investigate the activity of certain previously synthesized benzo[g]quinazolines against C. albicans in vitro by using the cup-plate diffusion method. There was a marked difference in the effectiveness of the target compounds 1–6 against the sample of C. albicans that was tested. Benzo[g]quinazolines 1 (inhibition zone = 20 mm) and 2 (inhibition zone = 22 mm) had good effects in comparison to fluconazole (inhibition zone = 26 mm). A docking study was conducted between benzo[g]quinazolines 1–6 and Candida spp. CYP51 to establish the binding mode compared with fluconazole and VT-1161 (oteseconazole) as reference medicines, and it was determined that binding at the active site of Candida spp. CYP51 occurred in the same manner. Quantitative structure–activity relationship (QSAR) investigation was performed to further characterize the identified anticandidal agents and recognize the major regulatory components governing such activity. In future studies, the benzo[g]quinazoline scaffold could serve as a model for the design and development of novel derivatives with antifungal potential.
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- 2023
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3. Tn7382, a novel composite transposon harboring blaNDM-1 and aphA6 in Acinetobacter baumannii
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Samira M. Hamed, Amira F.A. Hussein, Mohamed H. Al-Agamy, Hesham H. Radwan, and Mai M. Zafer
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Acinetobacter baumannii ,Whole genome sequencing ,WGS ,Transposon ,Tn7382 ,blaNDM-1 ,Microbiology ,QR1-502 - Abstract
Objectives: Co-transfer of carbapenem and amikacin resistance might contribute to the evolution of extensively drug resistant (XDR) Acinetobacter baumannii. The current study used bioinformatic tools and an in silico approach to investigate the potential mobility of a novel composite transposon co-harboring blaNDM-1 and aphA6. Methods: The transposon, named here Tn7382, was recently identified in the chromosomes of two XDR A. baumannii isolates (M02 and M11) from Egypt. The draft genomes of M02 and M11 were generated by Illumina sequencing. Nucleotide homology of Tn7382 and flanking regions was analyzed using the Basic Local Alignment Search Tool. Results: Tn7382 is derived from Tn125 and encompasses seven open reading frames [aphA6, ISAba125 transposase-coding gene, blaNDM-1, ble, iso, tat, cutA] enclosed by two direct copies of ISAba14. While described for the first time, Tn7382 was found in the chromosomes of five A. baumannii strains deposited in the NCBI database. Using the Artemis Comparison Tool, the potential mobility of Tn7382 was demonstrated in silico by comparative genomic analysis of two A. baumannii strains (TP1 and TP2) retrieved from the NCBI database. The transposon was acquired by TP2 at the same location as an ISAba14 element in the ancestral variant TP1 isolated from the same patient in the USA 11 days earlier. Conclusions: Here, we present the characteristics of Tn7382, a composite transposon flanked by ISAba14 and harboring the aphA6 and blaNDM-1 resistance genes. In silico analysis inferred the potential mobility of Tn7382, but experimental validation is still required.
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- 2022
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4. Retained colistin susceptibility in clinical Acinetobacter baumannii isolates with multiple mutations in pmrCAB and lpxACD operons
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Mai M. Zafer, Amira F. A. Hussein, Mohamed H. Al-Agamy, Hesham H. Radwan, and Samira M. Hamed
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healthcare-associated infections ,Acinetobacter baumannii ,extensive drug resistance ,colistin resistance ,whole-genome sequencing ,pmrCAB ,Microbiology ,QR1-502 - Abstract
The progressive increase in the resistance rates to first- and second-line antibiotics has forced the reuse of colistin as last-line treatment for Acinetobacter baumannii infections, but the emergence of colistin-resistant strains is not uncommon. This has been long linked to acquired chromosomal mutations in the operons pmrCAB and lpxACD. Hence, such mutations are routinely screened in colistin-resistant strains by most studies. The current study was designed to explore the possible existence of pmrCAB and lpxACD mutations in colistin-susceptible isolates. For this purpose, the whole genome sequences of eighteen multi-/extensively drug resistant A. baumannii were generated by Illumina sequencing and screened for missense mutations of the operons pmrCAB and lpxACD. Most of the isolates belonged to global clones (GCs) including GC1 (n=2), GC2 (n=7), GC7 (n=2), GC9 (n=3), and GC11 (n=1). The minimum inhibitory concentrations (MICs) of colistin were determined by the broth microdilution assay. Seventeen isolates were fully susceptible to colistin with MICs ranging from (≤0.125 to 0.5 µg/ml). Interestingly, all colistin-susceptible isolates carried missense mutations in pmrCAB and lpxACD operons with reference to A. baumannii ATCC 19606. Overall, 34 mutations were found. Most substitutions were detected in pmrC (n=20) while no mutations were found in pmrA or lpxA. Notably, the mutation pattern of the two operons was almost conserved among the isolates that belonged to the same sequence type (ST) or GC. This was also confirmed by expanding the analysis to include A. baumannii genomes deposited in public databases. Here, we demonstrated the possible existence of missense mutations in pmrCAB and lpxACD operons in colistin-susceptible isolates, shedding light on the importance of interpreting mutations with reference to colistin-susceptible isolates of the same ST/GC to avoid the misleading impact of the ST/GC-related polymorphism. In turn, this may lead to misinterpretation of mutations and, hence, overlooking the real players in colistin resistance that are yet to be identified.
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- 2023
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5. Editorial: Rekindling of a masterful precedent: bacteriophage
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Ghadir S. El-Housseiny, Mohamed H. Al-Agamy, and Khaled M. Aboshanab
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bacteriophage ,MRSA ,antimicrobial resistance ,phage therapy ,optimization ,Microbiology ,QR1-502 - Published
- 2023
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6. Statistical optimization of a podoviral anti-MRSA phage CCASU-L10 generated from an under sampled repository: Chicken rinse
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Israa M. Abd-Allah, Ghadir S. El-Housseiny, Mohamed H. Al-Agamy, Hesham H. Radwan, Khaled M. Aboshanab, and Nadia A. Hassouna
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phage ,MRSA ,optimization ,RSM ,podoviral phage ,Microbiology ,QR1-502 - Abstract
IntroductionThe insurgence of antimicrobial resistance is an imminent health danger globally. A wide range of challenging diseases are attributed to methicillin-resistant Staphylococcus aureus (MRSA) as it is weaponized with a unique array of virulence factors, and most importantly, the resistance it develops to most of the antibiotics used clinically. On that account, the present study targeted the optimization of the production of a bacteriophage active against MRSA, and evaluating some of its characters.Methods and resultsThe bacteriophage originated from a quite peculiar environmental source, raw chicken rinse and was suggested to belong to Podoviridae, order Caudovirales. It withstood a variety of extreme conditions and yield optimization was accomplished via the D-optimal design by response surface methodology (RSM). A reduced quadratic model was generated, and the ideal production conditions recommended were pH 8, glycerol 0.9% v/v, peptone 0.08% w/v, and 107 CFU/ml as the host inoculum size. These conditions led to a two-log fold increase in the phage titer (1.17x10¹² PFU/ml), as compared to the regular conditions.DiscussionTo conclude, statistical optimization successfully enhanced the output of the podoviral phage titer by two-log fold and therefore, can be regarded as a potential scale-up strategy. The produced phage was able to tolerate extreme environmental condition making it suitable for topical pharmaceutical preparations. Further preclinical and clinical studies are required to ensure its suitability for use in human.
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- 2023
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7. Synthesis of (R)-(6-Methoxyquinolin-4-yl)[(1S,2S,4S,5R)-5-vinylquinuclidin-2-yl]methanol Tetraphenylborate Ion-Pair Complex: Characterization, Antimicrobial, and Computational Study
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Tarek A. Yousef, Haitham Alrabiah, Mohamed H. Al-Agamy, Rashad Al-Salahi, Essam A. Ali, and Gamal A. E. Mostafa
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quinine ,tetraphenyl borate ,ion-pair complex ,characterization ,antibacterial activity ,computational study ,Organic chemistry ,QD241-441 - Abstract
The (R)-(6-Methoxyquinolin-4-yl)[(1S,2S,4S,5R)-5-vinylquinuclidin-2-yl]methanol (quinine)-tetraphenylborate complex was synthesized by reacting sodium tetraphenyl borate with quinine in deionized water at room temperature through an ion-pair reaction (green chemistry) at room temperature. The solid complex was characterized by several physicochemical methods. The formation of ion-pair complex between bio-active molecules and/or organic molecules is crucial to comprehending the relationships between bioactive molecules and receptor interactions. The complex under study was examined for antimicrobial activity. All theoretical calculations were carried out in vacuum and water using the B3LYP level 6–311G(d,p) levels of theory. The theoretical computation allowed for the prediction and visualization of ionic interactions, which explained the complex’s stability. The results of energy optimization showed that the Q-TPB complex is stable with a negative complexation energy. The obtained geometries showed that the boron (B−) and nitrogen (N+) in piperidine of the two molecules tetraphenylborate and quinine are close to each other, which makes it possible for ions to interact. The modest energy gap between HOMO and LUMO showed that the compound was stable. The computation of the electron transitions of the two models by density functional theory (TD-DFT) in the solvent at the theoretical level B3LYP/6–311G(d,p) allowed for the detection of three UV/visible absorption bands for both models and the discovery of a charge transfer between the host and the guest. The UV absorption, infrared, and H NMR are comparable with the experimental part.
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- 2023
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8. Correlation of CRISPR/Cas and Antimicrobial Resistance in Klebsiella pneumoniae Clinical Isolates Recovered from Patients in Egypt Compared to Global Strains
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Amany K. Alkompoz, Samira M. Hamed, Ahmed S. Abu Zaid, Thamer A. Almangour, Mohamed H. Al-Agamy, and Khaled M. Aboshanab
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antimicrobial resistance ,CRISPR/Cas ,Klebsiella pneumoniae ,I-E ,I-E* ,plasmids ,Biology (General) ,QH301-705.5 - Abstract
The CRISPR/Cas system has been long known to interfere with the acquisition of foreign genetic elements and was recommended as a tool for fighting antimicrobial resistance. The current study aimed to explore the prevalence of the CRISPR/Cas system in Klebsiella pneumoniae isolates recovered from patients in Egypt in comparison to global strains and correlate the CRISPR/Cas to susceptibility to antimicrobial agents. A total of 181 clinical isolates were PCR-screened for cas and selected antimicrobial resistance genes (ARGs). In parallel, 888 complete genome sequences were retrieved from the NCBI database for in silico analysis. CRISPR/Cas was found in 46 (25.4%) isolates, comprising 18.8% type I-E and 6.6% type I-E*. Multidrug resistance (MDR) and extensive drug resistance (XDR) were found in 73.5% and 25.4% of the isolates, respectively. More than 95% of the CRISPR/Cas-bearing isolates were MDR (65.2%) or XDR (32.6%). No significant difference was found in the susceptibility to the tested antimicrobial agents among the CRISPR/Cas-positive and -negative isolates. The same finding was obtained for the majority of the screened ARGs. Among the published genomes, 23.2% carried CRISPR/Cas, with a higher share of I-E* (12.8%). They were confined to specific sequence types (STs), most commonly ST147, ST23, ST15, and ST14. More plasmids and ARGs were carried by the CRISPR/Cas-negative group than others, but their distribution in the two groups was not significantly different. The prevalence of some ARGs, such as blaKPC, blaTEM, and rmtB, was significantly higher among the genomes of the CRISPR/Cas-negative strains. A weak, nonsignificant positive correlation was found between the number of spacers and the number of resistance plasmids and ARGs. In conclusion, the correlation between CRISPR/Cas and susceptibility to antimicrobial agents or bearing resistance plasmids and ARGs was found to be nonsignificant. Plasmid-targeting spacers might not be naturally captured by CRISPR/Cas. Spacer match analysis is recommended to provide a clearer image of the exact behavior of CRISPR/Cas towards resistance plasmids.
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- 2023
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9. Genetic Configuration of Genomic Resistance Islands in Acinetobacter baumannii Clinical Isolates From Egypt
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Samira M. Hamed, Amira F. A. Hussein, Mohamed H. Al-Agamy, Hesham H. Radwan, and Mai M. Zafer
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Acinetobacter baumannii ,whole genome sequencing ,resistance islands ,AbaR4 ,AbGRI1 ,AbGRI2 ,Microbiology ,QR1-502 - Abstract
In Acinetobacter baumannii (A. baumannii), a wide repertoire of resistance genes is often carried within genomic resistance islands (RIs), particularly in high-risk global clones (GCs). As the first in Egypt, the current study aimed at exploring the diversity and genetic configuration of RIs in the clinical isolates of A. baumannii. For this purpose, draft genomes of 18 isolates were generated by Illumina sequencing. Disk diffusion susceptibility profiling revealed multidrug resistance (MDR) and extensive drug resistance (XDR) phenotypes in 27.7 and 72.2%, respectively. The highest susceptibility was noted for tigecycline (100.0%) followed by colistin (94.4%), for which an MIC50 of 0.25 μg/ml was recorded by the broth microdilution assay. Sequence typing (ST) showed that the majority of the isolates belonged to high-risk global clones (GC1, GC2, and GC9). A novel Oxford sequence type (ST2329) that also formed a novel clonal complex was submitted to the PubMLST database. A novel blaADC variant (blaADC−258) was also identified in strain M18 (ST85Pas/1089Oxf). In addition to a wide array of resistance determinants, whole-genome sequencing (WGS) disclosed at least nine configurations of genomic RIs distributed over 16/18 isolates. GC2 isolates accumulated the largest number of RIs (three RIs/isolate) followed by those that belong to GC1 (two RIs/isolate). In addition to Tn6022 (44.4%), the comM gene was interrupted by AbaR4 (5.5%) and three variants of A. baumanniigenomic resistance island 1(AbGRI)-type RIs (44.4%), including AbaR4b (16.6%) and two novel configurations of AbGRI1-like RIs (22.2%). Three of which (AbaR4, AbaR4b, and AbGRI1-like-2) carried blaOXA−23 within Tn2006. With less abundance (38.8%), IS26-bound RIs were detected exclusively in GC2 isolates. These included a short version of AbGRI2 (AbGRI2-15) carrying the genes blaTEM−1 and aphA1 and two variants of AbGRI3 RIs carrying up to seven resistance genes [mphE-msrE-armA-sul1-aadA1-catB8-aacA4]. Confined to GC1 (22.2%), sulfonamide resistance was acquired by an ISAba1 bracketed GIsul2 RI. An additional RI (RI-PER-7) was also identified on a plasmid carried by strain M03. Among others, RI-PER-7 carried the resistance genes armA and blaPER−7. Here, we provided a closer view of the diversity and genetic organization of RIs carried by a previously unexplored population of A. baumannii.
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- 2022
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10. Synthesis of 4-Amino-N-[2 (diethylamino)Ethyl]Benzamide Tetraphenylborate Ion-Associate Complex: Characterization, Antibacterial and Computational Study
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Gamal A. E. Mostafa, Ahmed H. Bakheit, Mohamed H. Al-Agamy, Rashad Al-Salahi, Essam A. Ali, and Haitham Alrabiah
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procainamide ,tetraphenyl borate ,ion-associate complex ,characterization ,antibacterial activity ,computational study ,Organic chemistry ,QD241-441 - Abstract
The 4-amino-N-[2 (diethylamino) ethyl] benzamide (procainamide)-tetraphenylborate complex was synthesized by reacting sodium tetraphenyl borate with 4-amino-N-[2 (diethylamino) ethyl] benzamide, chloride salt, and procainamide in deionized water at room temperature through an ion-associate reaction (green chemistry) at room temperature, and characterized by several physicochemical methods. The formation of ion-associate complex between bio-active molecules and/or organic molecules is crucial to comprehending the relationships between bioactive molecules and receptor interactions. The solid complex was characterized by infrared spectra, NMR, elemental analysis, and mass spectrometry, indicating the formation of ion-associate or ion-pair complex. The complex under study was examined for antibacterial activity. The ground state electronic characteristics of the S1 and S2 complex configurations were computed using the density functional theory (DFT) approach, using B3LYP level 6-311 G(d,p) basis sets. R2 = 0.9765 and 0.9556, respectively, indicate a strong correlation between the observed and theoretical 1H-NMR, and the relative error of vibrational frequencies for both configurations was acceptable, as well. HOMO and LUMO frontier molecular orbitals and molecular electrostatics using the optimized were used to obtain a potential map of the chemical. The n → π* UV absorption peak of the UV cutoff edge was detected for both configurations of the complex. Spectroscopic methods were structures used to characterize the structure (FT-IR and 1HNMR). In the ground state, DFT/B3LYP/6-311G(d,p) basis sets were used to determine the electrical and geometric properties of the S1 and S2 configurations of the title complex. Comparing the observed and calculated values for the S1 and S2 forms, the HOMO-LUMO energy gap of compounds was 3182 and 3231 eV, respectively. The small energy gap between HOMO and LUMO indicated that the compound was stable. In addition, the MEP reveals that positive potential sites were around the PR molecule, whereas negative potential sites were surrounding the TPB site of atoms. The UV absorption of both arrangements is comparable to the experimental UV spectrum.
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- 2023
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11. Genomic Characterization of Extensively Drug-Resistant NDM-Producing Acinetobacter baumannii Clinical Isolates With the Emergence of Novel blaADC-257
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Mai M. Zafer, Amira F. A. Hussein, Mohamed H. Al-Agamy, Hesham H. Radwan, and Samira M. Hamed
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healthcare-associated infections ,Acinetobacter baumannii ,extensive drug resistance ,blaNDM ,whole-genome sequencing ,multilocus sequence typing ,Microbiology ,QR1-502 - Abstract
Acinetobacter baumannii has become a major challenge to clinicians worldwide due to its high epidemic potential and acquisition of antimicrobial resistance. This work aimed at investigating antimicrobial resistance determinants and their context in four extensively drug-resistant (XDR) NDM-producing A. baumannii clinical isolates collected between July and October 2020 from Kasr Al-Ainy Hospital, Cairo, Egypt. A total of 20 A. baumannii were collected and screened for acquired carbapenemases (blaNDM, blaVIM and blaIMP) using PCR. Four NDM producer A. baumannii isolates were identified and selected for whole-genome sequencing, in silico multilocus sequence typing, and resistome analysis. Antimicrobial susceptibility profiles were determined using disk diffusion and broth microdilution tests. All blaNDM-positive A. baumannii isolates were XDR. Three isolates belonged to high-risk international clones (IC), namely, IC2 corresponding to ST570Pas/1701Oxf (M20) and IC9 corresponding to ST85Pas/ST1089Oxf (M02 and M11). For the first time, we report blaNDM-1 gene on the chromosome of an A. baumannii strain that belongs to sequence type ST164Pas/ST1418Oxf. Together with AphA6, blaNDM-1 was bracketed by two copies of ISAba14 in ST85Pas isolates possibly facilitating co-transfer of amikacin and carbapenem resistance. A novel blaADC allele (blaADC-257) with an upstream ISAba1 element was identified in M19 (ST/CC164Pas and ST1418Oxf/CC234Oxf). blaADC genes harbored by M02 and M11 were uniquely interrupted by IS1008. Tn2006-associated blaOXA-23 was carried by M20. blaOXA-94 genes were preceded by ISAba1 element in M02 and M11. AbGRI3 was carried by M20 hosting the resistance genes aph(3`)-Ia, aac(6`)-Ib`, catB8, ant(3``)-Ia, sul1, armA, msr(E), and mph(E). Nonsynonymous mutations were identified in the quinolone resistance determining regions (gyrA and parC) of all isolates. Resistance to colistin in M19 was accompanied by missense mutations in lpxACD and pmrABC genes. The current study provided an insight into the genomic background of XDR phenotype in A. baumannii recovered from patients in Egypt. WGS revealed strong association between resistance genes and diverse mobile genetic elements with novel insertion sites and genetic organizations.
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- 2021
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12. Emergence of colistin resistance in multidrug-resistant Klebsiella pneumoniae and Escherichia coli strains isolated from cancer patients
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Mai M. Zafer, Hadir A. El-Mahallawy, Asmaa Abdulhak, Magdy A. Amin, Mohamed H. Al-Agamy, and Hesham H. Radwan
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Colistin-resistance ,mcr-1 ,mcr-2 ,mgrB ,Escherichia coli ,Klebsiella pneumoniae ,Therapeutics. Pharmacology ,RM1-950 ,Infectious and parasitic diseases ,RC109-216 ,Microbiology ,QR1-502 - Abstract
Abstract Background Colistin resistance is mainly driven by alterations in the Gram-negative outer membrane lipopolysaccharides and is caused, in most cases, by mutations in mgrB gene. However, the recent emergence of plasmid-encoded colistin resistance among Enterobacteriaceae strains represents a serious threat to global public health. In this paper we have investigated the rates of colistin resistance and the underlying mechanisms in 450 Klebsiella pneumoniae and Escherichia coli isolates obtained from cancer patients in Egypt. Methods Colistin susceptibility and minimum inhibitory concentrations were determined according to the European Committee on Antimicrobial Susceptibility Testing, by broth microdilution, and by E-test. The mcr-1, mcr-2 and mgrB genes were detected by PCR and then sequenced. Clonal diversity in colistin-resistant K. pneumoniae was evaluated by multilocus sequence typing. Results Forty (8.8%) colistin-resistant isolates, including 22 K. pneumoniae and 18 E. coli, were isolated over 18 months. Of these, 50% were carbapenem-resistant, out of which nine were bla OXA-48 and seven bla NDM-1 positive. The mechanisms of colistin resistance could be revealed only in three of the 40 resistant strains, being represented by mcr-1 in one bla NDM-1 -positive E. coli strain and in one K. pneumoniae ST11 and by mgrB mutations, detected in one K. pneumoniae isolate. None of the studied isolates harbored mcr-2. Conclusions Our results demonstrate a high frequency of colistin resistance in enterobacterial strains isolated from cancer patients, but a low prevalence of the most well known resistance mechanisms.
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- 2019
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13. Employment of Mapping Technology in Antimicrobial Resistance Reporting in Saudi Arabia
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Abdullah A. Alhifany, Abdullah F. Alqurashi, Mohamed H. Al-Agamy, Nasser Alkhushaym, Faten Alhomoud, Farah K. Alhomoud, and Thamer A. Almangour
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Antimicrobial resistance ,Geographical information system ,Enterobacteriaceae ,Pseudomonas aeruginosa ,Acinetobacter baumannii ,Saudi Arabia ,Geography (General) ,G1-922 - Abstract
Although Antimicrobial Resistance (AMR) is a worldwide threat, local AMR databases do not exist. Unlike other health disasters, developing containment strategies for AMR cannot be started without a representative, local, updated AMR data. However, Geographical Information Systems (GIS) mapping technology is capable of visualizing AMR data integrated with geographical regions. Due to the absence of AMR databases in Saudi Arabia, we searched Medline and Embase databases from inception until May 28, 2018, including literature that reported AMR data on the most prevalent gram-negative bacterial strains in Saudi Arabia. These data were extracted into Microsoft Excel file and inserted into STATA software, version 13 and ArcMap 10.6 software platform for mapping. We found particularly high levels of AMR in Makkah (Mecca), possibly due to high antibiotic consumption because of the influx of pilgrims, with Pseudomonas aeruginosa isolates showing the highest resistance rate against amikacin, aztreonam, cefepime, ceftazidime, ciprolfloxacin, gentamicin, imipenem, meropenem and pipracillin/tazobactam, and Enterobacteriaceae isolates against cefuroxime, ciprofloxacin, ampicillin, imipenem and ertapenem. The cause is, however, multifactorial since Acinetobacter baumannii isolates showed a variable resistance rate throughout the country. The employment of mapping technology in displaying AMR data extracted from published literature is a practically useful approach, and advanced GIS analyses should help stakeholders create containment strategies and allocate resources to slow down the emergence of AMR.
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- 2020
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14. Evaluation of wound healing activity of henna, pomegranate and myrrh herbal ointment blend
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Ehab M. Elzayat, Sayed H. Auda, Fars K. Alanazi, and Mohamed H. Al-Agamy
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Therapeutics. Pharmacology ,RM1-950 - Abstract
This study assessed the wound healing potential and antimicrobial activity of henna, pomegranate and myrrh extract formulations and their blend in excision, and dead space wound models in rats in comparison to a marketed ointment (gentamycin). The natural extracts were used in ointment formulations alone or in a combination of three extracts at a total concentration of 15% w/w in medications. The percent of wound contraction in case of henna, myrrh, pomegranate, the blend and gentamycin (10 mg/kg) were 85.90–98.5%, 88.35–99.52%, 93.55–100%, 97.30–100%, and 90.25–100% from days 16 to 20, respectively. The blended formulation showed the highest increase in the percent of wound contraction and decrease in the epithelisation period compared to other formulations and showed comparable results to the standard ointment. The histological studies of excision biopsy at day 24 showed healed skin structures with normal epithelisation, the restoration of adnexa and fibrosis within the dermis in all of the formulation- and gentamycin-treated groups while the control group lagged behind in the formation of the amount of ground substance in the granulation tissue. The formulations showed antimicrobial activity against Candida, Staphylococcus aureus, mucous membrane infections and E. coli topical infections. The study proved the wound healing potential and antimicrobial activity of the herbal extract. Keywords: Wound healing, Henna, Pomegranate, Myrrh, Hydrophilic ointment, Herbal extract
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- 2018
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15. Characterization of carbapenemases, ESBLs, and plasmid-mediated quinolone determinants in carbapenem-insensitive Escherichia coli and Klebsiella pneumoniae in Riyadh hospitals
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Mohamed H. Al-Agamy, Abduelah Aljallal, Hesham H. Radwan, and Atef M. Shibl
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Infectious and parasitic diseases ,RC109-216 ,Public aspects of medicine ,RA1-1270 - Abstract
The main objective of this work was to characterize carbapenemases, extended-spectrum β-lactamases (ESBLs), and plasmid-mediated quinolone resistance (PMQR) among carbapenem-insensitive Klebsiella pneumoniae and Escherichia coli clinical isolates which were isolated from three hospitals in Riyadh. Thirty-one carbapenem-insensitive isolates (21 K. pneumoniae and 10 E. coli) were recovered from March 2014 to May 2014. Susceptibility testing and phenotypic detection tests were used to characterize the classes of β-lactamases. PCR assays were performed for the detection of the genes encoding ESBL (blaCTX-M, blaTEM, blaSHV, and blaOXA-1), carbapenemase (blaKPC, blaGES, blaVIM, blaIMP, blaNDM, and blaOXA-48), and PMQR (qnrA, qnrB, qnrS, aac(6)-Ib-cr, qepA, oqxA, and oqxB) genes. All carbapenem-insensitive isolates were carbapenemase producers, with 41.9% and 58.1% being class B carbapenemases class D OXA-48, respectively. While the prevalence of ESBL producers was 80.6%. The following resistance genes were detected; OXA-48-like (58.1%), NDM-type (41.9%), CTX-M-1-like (77.4%), CTX-M-9-like (9.6%), TEM-1 (74.2%), OXA-1 (54.8%), SHV-1 (4.4%), qnrS (58.1%), qnrB (3.2%), and aac(6)-Ib-cr (51.6%). The predominant carbapenemases in the isolates that had carbapenem MIC ≤ 4 μg/ml and MIC ≥ 12 μg/ml were blaOXA-48-type and blaNDM-type respectively. CTX-M-1-like and qnrS were the dominant ESBL and PMQR genes, respectively. This is the first report in which qnrS was described in the isolates from Saudi Arabia. Keywords: OXA-48, NDM, Carbapenem resistance, Saudi Arabia
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- 2018
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16. (2E)-2-[1-(1,3-Benzodioxol-5-yl)-3-(1H-imidazol-1-yl)propylidene]-N-(2-chlorophenyl)hydrazine carboxamide: Synthesis, X-ray Structure, Hirshfeld Surface Analysis, DFT Calculations, Molecular Docking and Antifungal Profile
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Reem I. Al-Wabli, Alwah R. Al-Ghamdi, Suchindra Amma Vijayakumar Aswathy, Hazem A. Ghabbour, Mohamed H. Al-Agamy, Issac Hubert Joe, and Mohamed I. Attia
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Crystal structure ,Imidazole ,Benzodioxole ,Semicarbazone ,DFT ,Crystallography ,QD901-999 - Abstract
Life-threatening fungal infections accounts for a major global health burden especially for individuals suffering from cancer, acquired immune deficiency syndrome (AIDS), or autoimmune diseases. (2E)-2-[1-(1,3-Benzodioxol-5-yl)-3-(1H-imidazol-1-yl)propylidene]-N-(2-chlorophenyl)hydrazinecarboxamide has been synthesized and characterized using various spectroscopic tools to be evaluated as a new antifungal agent. The (E)-configuration of the imine moiety of the title molecule has been unequivocally identified with the aid of single crystal X-ray analysis. The molecular structure of compound 4 was crystallized in the monoclinic, P21/c, a = 8.7780 (6) Å, b = 20.5417 (15) Å, c = 11.0793 (9) Å, β = 100.774 (2)°, V = 1962.5 (3) Å3, and Z = 4. Density functional theory computations have thoroughly explored the electronic characteristics of the title molecule. Moreover, molecular docking studies and Hirshfeld surface analysis were also executed on the title compound 4. The in vitro antifungal potential of the target compound was examined against four different fungal strains.
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- 2019
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17. Synthesis and Spectroscopic Identification of Certain Imidazole-Semicarbazone Conjugates Bearing Benzodioxole Moieties: New Antifungal Agents
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Reem I. Al-Wabli, Alwah R. Al-Ghamdi, Hazem A. Ghabbour, Mohamed H. Al-Agamy, and Mohamed I. Attia
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crystal structure ,imidazole ,benzodioxole ,semicarbazones ,antifungal ,Organic chemistry ,QD241-441 - Abstract
During the last three decades the extent of life-threatening fungal infections has increased remarkably worldwide. Synthesis and structure elucidation of certain imidazole-semicarbazone conjugates 5a–o are reported. Single crystal X-ray analysis of compound 5e unequivocally confirmed its assigned chemical structure and the (E)-configuration of its imine double bond. Compound 5e crystallized in the triclinic system, P-1, a = 6.3561 (3) Å, b = 12.5095 (8) Å, c = 14.5411 (9) Å, α = 67.073 (4)°, β = 79.989 (4)°, γ =84.370 (4)°, V = 1048.05 (11) Å3, Z = 2. In addition, DIZ and MIC assays were used to examine the in vitro antifungal activity of the title conjugates 5a–o against four fungal strains. Compound 5e, bearing a 4-ethoxyphenyl fragment, showed the best MIC value (0.304 µmol/mL) against both C. tropicalis and C. parapsilosis species, while compounds 5c (MIC = 0.311 µmol/mL), 5k, and 5l (MIC = 0.287 µmol/mL) exhibited the best anti-C. albicans activity.
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- 2019
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18. Synthesis, Single Crystal X-ray Structure, DFT Computations, Hirshfeld Surface Analysis and Molecular Docking Simulations on ({[(1E)-1-(1,3-Benzodioxol-5-yl)-3-(1H-imidazol-1-yl)propylidene]amino}oxy)(furan-2-yl)methanone: A New Antifungal Agent
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Reem I. Al-Wabli, Alwah R. Al-Ghamdi, S. V. Aswathy, Hazem A. Ghabbour, Mohamed H. Al-Agamy, I. Hubert Joe, and Mohamed I. Attia
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crystal structure ,imidazole ,benzodioxole ,ester ,DFT ,Crystallography ,QD901-999 - Abstract
The development of drug-resistance and high morbidity rates due to life-threatening fungal infections account for a major global health problem. A new antifungal imidazole-based oximino ester 5 has been prepared and characterized with the aid of different spectroscopic tools. Single crystal X-ray analysis doubtlessly identified the (E)-configuration of the imine fragment of the title compound. Compound 5, C18H15N3O5, was crystallized in the monoclinic, P21/c, a = 10.4067 (5) Å, b = 6.8534 (3) Å, c = 23.2437 (12) Å, β = 94.627 (2)°, V = 1652.37 (14) Å3, Z = 4. Spectral and electronic features of compound 5 have been thoroughly explored with the aid of density function theory (DFT) simulations and the data were compared with the experimental results. In addition, Hirshfeld surface analysis and molecular docking simulations were executed on the target compound. Molecular docking results are fairly consistent with the experimental in vitro antifungal potential of the oximino ester 5.
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- 2019
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19. Diversity of Molecular Mechanisms Conferring Carbapenem Resistance to Pseudomonas aeruginosa Isolates from Saudi Arabia
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Mohamed H. Al-Agamy, Katy Jeannot, Taghrid S. El-Mahdy, Hassan A. Samaha, Atef M. Shibl, Patrick Plésiat, and Patrice Courvalin
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Infectious and parasitic diseases ,RC109-216 ,Microbiology ,QR1-502 - Abstract
Background. This study described various molecular and epidemiological characters determining antibiotic resistance patterns in Pseudomonas aeruginosa isolates. Methods. A total of 34 carbapenem-resistant P. aeruginosa clinical isolates were isolated from samples collected at a tertiary hospital in Riyadh, Saudi Arabia, from January to December 2011. Susceptibility testing, serotyping, molecular characterization of carbapenem resistance, and pulsed-field gel electrophoresis (PFGE) were performed. Results. All isolates were resistant to ceftazidime, and more than half were highly resistant (minimum inhibitory concentration (MIC) > 256 mg/L). Fifteen isolates had MIC values ≥64 mg/L for any of the carbapenems examined. Vietnamese extended-spectrum β-lactamase (VEB-1) (n=16/34) and oxacillinase (OXA-10) (n=14/34) were the most prevalent extended-spectrum β-lactamase and penicillinase, respectively. Verona imipenemase (VIM-1, VIM-2, VIM-4, VIM-11, and VIM-28) and imipenemase (IMP-7) variants were found in metallo-β-lactamase producers. A decrease in outer membrane porin gene (oprD) expression was seen in nine isolates, and an increase in efflux pump gene (MexAB) expression was detected in five isolates. Six serotypes (O:1, O:4, O:7, O:10, O:11, and O:15) were found among the 34 isolates. The predominant serotype was O:11 (16 isolates), followed by O:15 (nine isolates). PFGE analysis of the 34 carbapenem-resistant P. aeruginosa isolates revealed 14 different pulsotypes. Conclusions. These results revealed diverse mechanisms conferring carbapenem resistance to P. aeruginosa isolates from Saudi Arabia.
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- 2016
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20. Synthesis, Single Crystal X-ray Analysis, and Antifungal Profiling of Certain New Oximino Ethers Bearing Imidazole Nuclei
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Reem I. Al-Wabli, Alwah R. Al-Ghamdi, Hazem A. Ghabbour, Mohamed H. Al-Agamy, and Mohamed I. Attia
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imidazole ,Mannich reaction ,X-ray ,antifungal agents ,anti-Candida ,Organic chemistry ,QD241-441 - Abstract
Fungal infections threaten human health, particularly in immune-compromised patients worldwide. Although there are a large number of antifungal agents available, the desired clinical attributes for the treatment of fungal infections have not yet been achieved. Azoles are the mainstay class of the clinically used antifungal agents. In the current study, the synthesis, spectroscopic characterization, and antifungal activity of certain new oximino ethers Va–n bearing imidazole nuclei are reported. The (E)-configuration of the imine double bond of the synthesized compounds Va–n has been confirmed via single crystal X-ray analysis of compound Vi as a representative example of this class of compounds. The molecular structure of compound Vi was crystallized in the monoclinic, P21/c, a = 18.7879(14) Å, b = 5.8944(4) Å, c = 16.7621(12) Å, β = 93.063(3)°, V = 1855.5(2) Å3, Z = 4. The in vitro antifungal activity of the synthesized compounds Va–n were evaluated using diameter of the inhibition zone (DIZ) and minimum inhibitory concentration (MIC) assays against different fungal strains. Compound Ve manifested anti-Candida albicans activity with an MIC value of 0.050 µmol/mL, being almost equipotent with the reference antifungal drug fluconazole (FLC),while compounds Vi and Vn are the most active congeners against Candida parapsilosis, being equipotent and about twenty-three times more potent than FLC with an MIC value of 0.002 µmol/mL. The results of the current report might support the development of new potent and safer antifungal azoles.
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- 2017
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21. Synthesis, X-ray Single Crystal Structure, Molecular Docking and DFT Computations on N-[(1E)-1-(2H-1,3-Benzodioxol-5-yl)-3-(1H-imidazol-1-yl)propylidene]-hydroxylamine: A New Potential Antifungal Agent Precursor
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Reem I. Al-Wabli, Alwah R. Al-Ghamdi, Hazem A. Ghabbour, Mohamed H. Al-Agamy, James Clemy Monicka, Issac Hubert Joe, and Mohamed I. Attia
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crystal structure ,imidazole ,benzodioxole ,oxime ,DFT ,Organic chemistry ,QD241-441 - Abstract
Mycoses are serious health problem, especially in immunocompromised individuals. A new imidazole-bearing compound containing an oxime functionality was synthesized and characterized with different spectroscopic techniques to be used for the preparation of new antifungal agents. The stereochemistry of the oxime double bond was unequivocally determined via the single crystal X-ray technique. The title compound 4, C13H13N3O3·C3H8O, crystallizes in the monoclinic space group P21with a = 9.0963(3) Å, b = 14.7244(6) Å, c = 10.7035(4) Å, β = 94.298 (3)°, V = 1429.57(9) Å3, Z = 2. The molecules were packed in the crystal structure by eight intermolecular hydrogen bond interactions. A comprehensive spectral analysis of the title molecule 4 has been performed based on the scaled quantum mechanical (SQM) force field obtained by density-functional theory (DFT) calculations. A molecular docking study illustrated the binding mode of the title compound 4 into its target protein. The preliminary antifungal activity of the title compound 4 was determined using a broth microdilution assay.
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- 2017
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22. Synthesis of Pyrazole-Thiobarbituric Acid Derivatives: Antimicrobial Activity and Docking Studies
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Yaseen A. M. M. Elshaier, Assem Barakat, Bander M. Al-Qahtany, Abdullah Mohammed Al-Majid, and Mohamed H. Al-Agamy
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pyrazole ,thiobarbituric acid ,antimicrobial activity ,Organic chemistry ,QD241-441 - Abstract
A one-pot reaction was described that results in various pyrazole-thiobarbituric acid derivatives as new pharmacophore agents. These new heterocycles were synthesized in high yields with a broad substrate scope under mild reaction conditions in water mediated by NHEt2. The molecular structures of the synthesized compounds were assigned based on different spectroscopic techniques. The new compounds were evaluated for their antibacterial and antifungal activity. Compounds 4h and 4l were the most active compounds against C. albicans with MIC = 4 µg/L. Compound 4c exhibited the best activity against S. aureus and E. faecalis with MIC = 16 µg/L. However, compounds 4l and 4o were the most active against B. subtilis with MIC = 16 µg/L. Molecular docking studies for the final compounds and standard drugs were performed using the OpenEye program.
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- 2016
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23. Design, Synthesis, Antimicrobial Evaluation and Molecular Modeling Study of 1,2,4-Triazole-Based 4-Thiazolidinones
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Sahar Ahmed, Mohamed F. Zayed, Shahenda M. El-Messery, Mohamed H. Al-Agamy, and Hamdy M. Abdel-Rahman
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4-thiazolidinones ,1,2,4-triazoles ,antibacterial agents ,antifungal agents ,molecular docking ,Organic chemistry ,QD241-441 - Abstract
A series of 3-(2H-1,2,4-triazol-5-yl)-1,3-thiazolidin-4-one derivatives (7c–l) was designed and synthesized. Their structures have been elucidated based on analytical and spectral data. They were evaluated for their antibacterial and antifungal activities. Compound 7h showed the highest activity against all tested strains, except P. vulgaris, with MIC 8 μg/mL and 4 μg/mL against S. aureus and C. albicans, respectively. Furthermore, Compounds 7c, 7h, and 7j demonstrated moderate anti-mycobacterium activity. The binding mode of the synthesized thiazolidinones to bacterial MurB enzyme was also studied. Good interactions between the docked compounds to the MurB active site were observed primarily with Asn83, Arg310, Arg188 and Ser82 amino acid residues.
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- 2016
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24. Production and Partial Characterization of α-Amylase Enzyme from Marine Actinomycetes
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Mohamed H. Al-Agamy, Mahmoud Kelany, Moaz Hamed, and Mohammed R. ALhuzani
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Article Subject ,General Immunology and Microbiology ,Medicine ,General Medicine ,General Biochemistry, Genetics and Molecular Biology - Abstract
Amylase producing actinobacteria were isolated and characterized from terrestrial environment. There are a limited number of reports investigating the marine environment; hence, in the present study, four marine enzymes were tested for their amylase production ability. On starch agar plates, the Streptomyces rochei strain showed a higher hydrolytic zone (24 mm) than the other isolates. Growth under optimized culture conditions using Plackett-Burman’s experimental design led to a 1.7, 9.8, 7.7, and 3.12-fold increase for the isolates S. griseorubens, S. rochei, S. parvus, and Streptomyces sp., respectively, in the specific activity measurement. When applying the Box-Behnken design on S. rochei using the most significant parameters (starch, K2HPO4, pH, and temperature), there was a 12.22-fold increase in the specific activity measurement 7.37 U/mg. The α-amylase was partially purified, and its molecular weight was determined using sodium dodecyl sulfate-polyacrylamide gel electrophoresis. α-Amylase was particularly active at pH 6 and 65°C. The purified enzyme was most active at 65°C and pH 6, thermal stability of 70°C for 40 min, and salt concentration of 1 M with Km and Vmax of 6.58 mg/ml and 21.93 μmol/ml/min, respectively. The α-amylase was improved by adding Cu+2, Zn+2, and Fe+2 (152.21%, 207.24%, and 111.89%). Increased production of α-amylase enzyme by S. rochei KR108310 leads to production of significant industrial products.
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- 2021
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25. Clinical Efficacy of Single Use of Three Different Mouthrinses on the Level of Streptococcus mutans in Saliva
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Mohamed H. Al-Agamy, Sultan A Alquraishi, Ibrahim B Aldossary, Fouad S Salama, Faisal S Alsaif, and Mannaa K Aldowsari
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education.field_of_study ,Saliva ,Single use ,Miswak ,biology ,business.industry ,Chlorhexidine ,Population ,Dentistry ,biology.organism_classification ,Streptococcus mutans ,Clinical study ,Statistical significance ,medicine ,education ,business ,General Dentistry ,medicine.drug - Abstract
AIM AND OBJECTIVE The aim of this cross-sectional population-based clinical study was to assess the effect of single use of three different mouthrinses on the level of salivary Streptococcus mutans of 8 to 10-year-old Saudi children. MATERIALS AND METHODS Convenient samples of 52 Saudi children aged 8-10 years were randomly allocated into four groups of 13 each. Saliva samples were collected to assess the level of S. mutans at baseline before rinsing with the assigned mouthrinse or control. Three mouthrinses, Avalon Avohex, Listerine Miswak, and Optima Aloe Dent Mouthrinse, were randomly distributed to the children. Each participant was instructed to rinse for 2 minutes using 10 mL of the assigned mouthrinse. Saliva samples were collected after rinsing and colony forming unit (CFU) of S. mutans per mL of saliva was calculated. Statistical analysis was performed to compare S. mutans count at baselines and postintervention values of each experimental group and control using paired t-test and one-way ANOVA. All statistical analyses were set at a significance level of p 0.05) in bacterial count was seen in Avalon Avohex group. CONCLUSION A single-time rinse of chlorhexidine extract mouthrinse for 2 minutes effectively reduced the number of S. mutans of 8 to 10-year-old Saudi children. CLINICAL SIGNIFICANCE Rinsing with chlorhexidine extract mouthrinse should be considered as a potential method in prevention of dental caries in children.
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- 2021
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26. Biosynthesis of Copper Oxide Nanoparticles Using Streptomyces MHM38 and Its Biological Applications
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Sarah I. Bukhari, Mohamed H. Al-Agamy, Hanaa S. S. Gazwi, Hesham H. Radwan, Asmaa M. Youssif, and Moaz M. Hamed
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Materials science ,Article Subject ,02 engineering and technology ,medicine.disease_cause ,Enterococcus faecalis ,03 medical and health sciences ,chemistry.chemical_compound ,Biosynthesis ,Lactate dehydrogenase ,medicine ,T1-995 ,General Materials Science ,Food science ,Candida albicans ,Escherichia coli ,Technology (General) ,030304 developmental biology ,0303 health sciences ,biology ,Aspergillus niger ,021001 nanoscience & nanotechnology ,biology.organism_classification ,Antimicrobial ,chemistry ,Urea ,0210 nano-technology - Abstract
Biosynthesis methods employing microorganisms have emerged as an eco-friendly, clean, and viable alternative to chemical and physical processes. The present study reports the synthesis of copper oxide nanoparticles (CuONPs) using cell-free culture supernatant of marine Streptomyces sp. MHM38. For the optimized production of CuONPs, the influence of some parameters, such as the concentration of copper sulfate (CuSO4), reaction time, filtrate to substrate ratio, and pH, was studied. 5 mM of CuSO4 was optimal for nanoparticle (NP) production. Well-defined CuONP formation occurred after 60 min of incubation when an equal volume of filtrate (cell-free supernatant) to substrate (CuSO4 solution) was added. UV-visible spectroscopy analysis of CuONPs exhibited a peak at 550 nm, which corresponds to the surface plasmon resonance of CuONPs. Most of the particles were spherical and were 1.72–13.49 nm when measured using a transmission electron microscope. The antimicrobial activity of CuONPs was determined using a well diffusion method against Enterococcus faecalis ATCC 29212, Salmonella typhimurium ATCC 14028, Pseudomonas aeruginosa ATCC 9027, Escherichia coli ATCC 8939, fungi (Rhizoctonia solani, Fusarium solani, and Aspergillus niger), and yeast (Candida albicans ATCC 10237). The highest antimicrobial activities were recorded against Candida albicans ATCC 10237, whereas Salmonella typhimurium ATCC 14028 and Escherichia coli ATCC 8939 showed the less activity. The biochemical findings of the CuONP groups were significant ( p < 0.05 ) with diminished levels of alanine aminotransferase (ALT), aspartate aminotransferase (AST), alkaline phosphatase (ALP), lactate dehydrogenase (LDH), total and direct bilirubin, urea, and creatinine compared with the paracetamol group. Nonenzymatic and enzymatic antioxidants of the CuONP groups were significantly elevated ( p < 0.05 ) in SOD and GSH levels, and exceptionally low nitric oxide (NO) and malondialdehyde (MAD) levels were found for the paracetamol group. The histopathological examination of the CuONP groups assured the impact of improving CuONPs against paracetamol-induced liver damage.
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- 2021
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27. Genomic Characterization of Extensively Drug-Resistant NDM-Producing Acinetobacter baumannii Clinical Isolates With the Emergence of Novel blaADC-257
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Hesham H. Radwan, Mohamed H. Al-Agamy, Amira F. A. Hussein, Samira M. Hamed, and Mai M. Zafer
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Microbiology (medical) ,Genetics ,Acinetobacter baumannii ,bla NDM ,extensive drug resistance ,Context (language use) ,multilocus sequence typing ,Drug resistance ,Biology ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,Microbiology ,QR1-502 ,Resistome ,Antibiotic resistance ,healthcare-associated infections ,whole-genome sequencing ,Colistin ,medicine ,Multilocus sequence typing ,blaNDM ,Mobile genetic elements ,medicine.drug ,Original Research - Abstract
Acinetobacter baumannii has become a major challenge to clinicians worldwide due to its high epidemic potential and acquisition of antimicrobial resistance. This work aimed at investigating antimicrobial resistance determinants and their context in four extensively drug-resistant (XDR) NDM-producing A. baumannii clinical isolates collected between July and October 2020 from Kasr Al-Ainy Hospital, Cairo, Egypt. A total of 20 A. baumannii were collected and screened for acquired carbapenemases (blaNDM, blaVIM and blaIMP) using PCR. Four NDM producer A. baumannii isolates were identified and selected for whole-genome sequencing, in silico multilocus sequence typing, and resistome analysis. Antimicrobial susceptibility profiles were determined using disk diffusion and broth microdilution tests. All blaNDM-positive A. baumannii isolates were XDR. Three isolates belonged to high-risk international clones (IC), namely, IC2 corresponding to ST570Pas/1701Oxf (M20) and IC9 corresponding to ST85Pas/ST1089Oxf (M02 and M11). For the first time, we report blaNDM-1 gene on the chromosome of an A. baumannii strain that belongs to sequence type ST164Pas/ST1418Oxf. Together with AphA6, blaNDM-1 was bracketed by two copies of ISAba14 in ST85Pas isolates possibly facilitating co-transfer of amikacin and carbapenem resistance. A novel blaADC allele (blaADC-257) with an upstream ISAba1 element was identified in M19 (ST/CC164Pas and ST1418Oxf/CC234Oxf). blaADC genes harbored by M02 and M11 were uniquely interrupted by IS1008. Tn2006-associated blaOXA-23 was carried by M20. blaOXA-94 genes were preceded by ISAba1 element in M02 and M11. AbGRI3 was carried by M20 hosting the resistance genes aph(3`)-Ia, aac(6`)-Ib`, catB8, ant(3``)-Ia, sul1, armA, msr(E), and mph(E). Nonsynonymous mutations were identified in the quinolone resistance determining regions (gyrA and parC) of all isolates. Resistance to colistin in M19 was accompanied by missense mutations in lpxACD and pmrABC genes. The current study provided an insight into the genomic background of XDR phenotype in A. baumannii recovered from patients in Egypt. WGS revealed strong association between resistance genes and diverse mobile genetic elements with novel insertion sites and genetic organizations.
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- 2021
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28. Clinical Efficacy of Single Use of Three Different Mouthrinses on the Level of
- Author
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Mannaa K, Aldowsari, Fouad, Salama, Mohamed H, Al-Agamy, Sultan A, Alquraishi, Faisal S, Alsaif, and Ibrahim B, Aldossary
- Subjects
Streptococcus mutans ,Cross-Sectional Studies ,Treatment Outcome ,Humans ,Dental Caries ,Child ,Saliva - Abstract
The aim of this cross-sectional population-based clinical study was to assess the effect of single use of three different mouthrinses on the level of salivaryConvenient samples of 52 Saudi children aged 8-10 years were randomly allocated into four groups of 13 each. Saliva samples were collected to assess the level ofAll test groups showed a reduction in salivaryA single-time rinse of chlorhexidine extract mouthrinse for 2 minutes effectively reduced the number ofRinsing with chlorhexidine extract mouthrinse should be considered as a potential method in prevention of dental caries in children.
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- 2021
29. Genetic diversity of carbapenem-resistant Klebsiella Pneumoniae causing neonatal sepsis in intensive care unit, Cairo, Egypt
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Mahmoud M. Bendary, Marie Fe F. Bohol, Mohamed H. Al-Agamy, Mohammed N. Al-Ahdal, Sherif Elanwary, Ahmed A. Al-Qahtani, Doaa Ghaith, Mai M. Zafer, Halaa Mufeed Said, and Salwa Elsaban
- Subjects
0301 basic medicine ,Microbiology (medical) ,Klebsiella ,medicine.medical_specialty ,Neonatal intensive care unit ,Klebsiella pneumoniae ,030106 microbiology ,Microbial Sensitivity Tests ,Meropenem ,law.invention ,Sepsis ,03 medical and health sciences ,0302 clinical medicine ,law ,Intensive Care Units, Neonatal ,Internal medicine ,medicine ,Pulsed-field gel electrophoresis ,Humans ,Public Health Surveillance ,030212 general & internal medicine ,Neonatal sepsis ,biology ,business.industry ,Infant, Newborn ,Genetic Variation ,General Medicine ,Prognosis ,medicine.disease ,biology.organism_classification ,Intensive care unit ,Anti-Bacterial Agents ,Bacterial Typing Techniques ,Klebsiella Infections ,Carbapenem-Resistant Enterobacteriaceae ,Cross-Sectional Studies ,Treatment Outcome ,Infectious Diseases ,Egypt ,Neonatal Sepsis ,business ,medicine.drug - Abstract
Neonatal sepsis is a great challenge for clinicians and infection control practitioners, especially in facilities with limited resources. Carbapenem-resistant Klebsiella pneumoniae (CRKP) is rapidly increasing and carriages a major threat to neonates. We aimed to examine phenotypes causing neonatal late onset sepsis (NLOS) in comparison with neonatal early onset sepsis (NEOS) with further investigations of genotypes, and genetic relatedness of CRKP in neonatal late-onset sepsis. Our study included 88 neonates diagnosed with sepsis: 58 with (NLOS) and 30 with (NEOS) from November 2015 to April 2016, at neonatal intensive care unit (NICU) of Cairo University Hospital. K. pneumoniae was the most common encountered pathogen in the NLOS group (37.9%) with a mean sepsis score of 6.39 when compared to the NEOS group (p < 0.05). In Klebsiella group, C-reactive protein and interleukin-6 levels were significantly high (p ˂ 0.001) and 56.5% of the isolates were meropenem resistant. The most prevalent carbapenemase gene was OXA-48 which was identified in 14/23 (60.8%) followed by NDM-1 which was identified in 12/23 (52.2%) as detected by multiplex PCR. Coexistence of both carbapenemases was found in 52.2% (12/23). The blaKPC, blaIMP, and blaVIM genes were not harbored in the isolates. By investigating the genetic relatedness of CRKP by pulsed-field gel electrophoresis, 23 isolates of K. pneumoniae revealed various pulsed-field gel electrophoresis (PFGE) patterns, demonstrating that the isolates were non-clonal. Awareness of the existing phenotypes and genotypes is important for proper treatment and infection control practices.
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- 2019
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30. Hirshfeld Surface, Molecular Docking Study, Spectroscopic Characterization and NLO Profile of 2‐Methoxy‐4,6‐Diphenylnicotinonitrile
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Adel S. El-Azab, Gökhan Alpaslan, Mohamed H. Al-Agamy, Halil Gökce, Alaa A.-M. Abdel-Aziz, Yusuf Sert, Mohammed M. Alanazi, and Belirlenecek
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Electronic features ,Surface (mathematics) ,Molecular docking study ,Materials science ,Computational chemistry ,NLO profile ,Hirshfeld surface analysis ,Molecule ,Spectroscopic characterization ,General Chemistry ,Molecular structure ,Characterization (materials science) - Abstract
WOS: 000491263700054 The compound 2-methoxy-4,6-diphenylnicotinonitrile was characterized by using experimental FT-IR, Laser-Raman, H-1 and (CNMR)-C-13 spectra and UV-Vis. spectroscopic analysis methods. To support experimental structural, vibrational, chemical shift and electronic records, the theoretical analyses were performed at the DFT/B3LYP method with the 6-311++G(2d,2p) basis set. The pi center dot center dot center dot pi, N center dot center dot center dot pi, N center dot center dot center dot H, C center dot center dot center dot H and O center dot center dot center dot H interactions within crystal packing of the compound, which aren't taken into account within the experimental single crystal X-Ray diffraction study, were investigated in detail with Hirshfeld surface analyses and their related 2D fingerprint plots. The highest occupied molecular orbital (HOMO), the lowest unoccupied molecular orbital (LUMO) and their associated parameters were used to explain intra-molecular charge transfer and global reactivity properties of the compound with the computational level of theory. Non-linear optical (NLO) profile of the title compound including pi electron systems such as aromatic and cyano groups was determined by considering the static polarizability (alpha) and the static first-order hyperpolarizability (beta) values. Molecular docking analysis was performed to determine intermolecular interactions between a Mps1/TTK protein kinase inhibitor with the title compound. Deanship of Scientific Research at King Saud UniversityDeanship of Scientific Research at King Saud University [RGP-163] The authors extend their appreciation to the Deanship of Scientific Research at King Saud University for funding the work through the research group project No. RGP-163.
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- 2019
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31. Synthesis and characterization of a spiroindolone pyrothiazole analog via X-ray, biological, and computational studies
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Mezna Saleh Altowyan, M. Iqbal Choudhary, Mohammed Rafi Shaik, M. Ali, Mohamed H. Al-Agamy, Saied M. Soliman, Assem Barakat, Saleh Atef, and Hazem A. Ghabbour
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biology ,Chemical structure ,Isatin ,Organic Chemistry ,Biological activity ,Carbon-13 NMR ,biology.organism_classification ,Combinatorial chemistry ,Analytical Chemistry ,Inorganic Chemistry ,HeLa ,chemistry.chemical_compound ,chemistry ,Yield (chemistry) ,Spiroindolone ,Spectroscopy ,Derivative (chemistry) - Abstract
Synthetic and natural spiroxindoles are important anti-inflammatory, antibacterial, antileishmanial, and anticancer agents. In this study, we prepared a spiroxindole derivative and evaluated the preliminary results of its biological activity including anti-inflammatory, antileishmanial, and cytotoxic activity against 3T3 and Hela cell lines. By adopting the 1,3-dipolar cycloaddition reaction, we were able to successfully combine olefin, isatin, and an amino acid to form the desired spiroxindole analog 4 (yield, up to 94%). To elucidate the chemical structure of 4, the X-ray single crystal diffraction technique was employed, and the electronic and NMR spectra of 4 were calculated using the B3LYP/6-311G(d,p) method. The calculated 1H and 13C NMR chemical shifts aligned well with the experimental data. Compound 4 was then evaluated for its anti-inflammatory, antileishmanial, and cytotoxic activity against 3T3 and Hela cell lines. This spiroxindole pyrothiazole (IC50 = 65.9 ± 6.6 μM) showed weak anti-inflammatory activity compared to the test standard, ibuprofen (IC50 = 11.2 ± 1.9 μM), and moderate anticancer activity against Hela cell lines compared to doxorubicin (IC50 = 1.2 ± 0.4 μM vs IC50 = 11.2 ± 0.3 μM for 4). Compound 4 also appeared as an effective antileishmanial agent (IC50 = 39.8 ± 0.43 μM) when tested in vitro.
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- 2019
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32. Biosurfactant Production by Marine Actinomycetes Isolates Streptomyces Althioticus RG3 and Streptomyces Californicus RG8 as a Promising Source of Antimicrobial and Antifouling Effects
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Asmaa M. Youssif, Mohammad R Alhuzani, Mohamed H. Al-Agamy, and Moaz M. Hamed
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Biofouling ,Chemistry ,Streptomyces californicus ,Food science ,Antimicrobial ,Streptomyces althioticus - Abstract
Background: Because of the ability of their bioactive metabolites production, many researchers were attracted to investigate and isolating marine actinomycetes from unique location with a unique environment. Information on antimicrobial activity and antifouling agents by Streptomyces sp. from the Ras Garib area, Gulf of Suez, Egypt is limited. One of the metabolites produced by the actinomycetes was biosurfactant. This paper describes the possibility of marine actinomycetes isolates for the production of biosurfactants, In addition to the possibility of using it as antimicrobial and antifouling agents.Results: Marine actinobacterial isolates RG3 and RG8 had emulsification indexes of 76 and 68%, respectively. The two marine actinobacterial isolates were identified using 16srDNA as Streptomyces althioticus RG3 and Streptomyces californicus RG8, and submitted in the database of genetic information with accession number MW661230 and MW661234, respectively. Biosurfactants were stable at 10% NaCl, in case of Streptomyces althioticus RG3 and stable at 10%–15% NaCl in the case of Streptomyces californicus RG8. A temperature of 35℃ was suitable for the stability of biosurfactants produced by both strains. Both strains produced the most biosurfactant when exposed to alkaline conditions. We characterized the biosurfactants produced by both strains including features such as the chemical composition of the biosurfactants and FTIR analysis. The antimicrobial activity of biosurfactants extract evaluated using a well diffusion method against Vibrio alginolyticus MK170250, Escherichia coli ATCC 8739, Pseudomonas aeruginosa ATCC 4027, and Staphylococcus aureus ATTC 25923. Streptomyces althioticus RG3 biosurfactants have been shown to have better antimicrobial activity than Streptomyces californicus RG8, indicating that they may be used in pharmaceutical industries and in the manufacture of antifouling products.Conclusions: Streptomyces althioticus RG3 and Streptomyces californicus RG8, isolated from Ras Garib, Gulf of Suez, Egypt, were able to develop very stable biosurfactants under stress conditions, which could be useful in a variety of industries such as pharmaceuticals and antifouling manufacturing.
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- 2021
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33. Production optimization using Plackett-Burman and Box-Behnken designs with partial characterization of amylase from marine actinomycetes
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Mahmoud Saber Kelany, Mohammad R Al Hazani, Moaz M. Hamed, Mohamed H. Al-Agamy, and Sarah I. Bukhari
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biology ,Plackett–Burman design ,Production optimization ,biology.protein ,Amylase ,Pulp and paper industry ,Box–Behnken design ,Mathematics - Abstract
Amylase is an industrial enzyme that is used in the food and biofuel industries. We screened four actinomycetes strains for amylase biosynthesis. The Streptomyces rochei strain had a larger hydrolytic zone (24 mm) on starch agar plates, than the other isolates. Plackett-Burman’s experimental design was implemented to optimize the conditions for amylase production by the selected strains. Growth under optimized culture conditions led to 1.7, 9.8, 7.7, and 3.12 -fold increases for the isolates S. griseorubens, S. rochei, S. parvus, and Streptomyces sp., respectively, in the specific activity measurement in comparison with growth under primary conditions. When applying the Box-Behnken design on S. rochei using the most significant parameters starch, K2HPO4, pH, and temperature, there was a 12.22-fold increase in the specific activity measurement: 7.37 U/mg. The optimal fermentation medium formula was kept at 30.6°C for seven days. The amylase from S. rochei was partially purified, and its molecular weight was determined using Sodium dodecyl sulfate-polyacrylamide gel electrophoresis. The molecular weight was found to be 45, 43, and 53 kDa. Amylase was particularly active at pH 6 and 65°C. The purified enzyme was most active at 65°C and a pH of 6, thermal stability of 70°C for 40 min and salt concentration of 1 M with a Km and Vmax of 6.58 mg/ml and 21.93 mg/ml/min, respectively. The amylase improved by adding Cu + 2, Zn + 2, and Fe + 2 (152.21%, 207.24%, and 111.89%). Increased production of amylase enzyme by Streptomyces rochei KR108310 attracts the production of industrially significant products.
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- 2021
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34. Biosynthesis of Copper Oxide Nanoparticles by Marine Streptomyces MHM38 and their Preventive Efficacy Against Paracetamol-Inducing Hepatic Damage of Albino Rats
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Asmaa M. Youssif, Hanaa S. S. Gazwi, Sara I. Bukhari, Mohamed H. Al-Agamy, Hesham H. Radwan, and Moaz M. Hamed
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chemistry.chemical_compound ,biology ,Hepatic damage ,Biosynthesis ,Biochemistry ,Chemistry ,Copper oxide nanoparticles ,biology.organism_classification ,Streptomyces - Abstract
The authors have withdrawn this preprint due to author disagreement.
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- 2021
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35. Charge Transfer Complex of Neostigmine with 2,3-Dichloro-5,6-Dicyano-1,4-Benzoquinone: Synthesis, Spectroscopic Characterization, Antimicrobial Activity, and Theoretical Study
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Gamal A. E. Mostafa, Mohamed H. Al-Agamy, Essam Ezzeldin, Hatem A. Abdel-Aziz, and Tarek A. Yousef
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0301 basic medicine ,Antifungal Agents ,Magnetic Resonance Spectroscopy ,synthesis ,Spectrophotometry, Infrared ,Pharmaceutical Science ,Infrared spectroscopy ,Microbial Sensitivity Tests ,DDQ ,spectroscopic ,Gram-Positive Bacteria ,Structure-Activity Relationship ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Anti-Infective Agents ,Candida albicans ,Gram-Negative Bacteria ,Drug Discovery ,Benzoquinones ,characterization ,Spectroscopy ,Acetonitrile ,Original Research ,Pharmacology ,antimicrobial activity ,Drug Design, Development and Therapy ,Chemistry ,neostigmine ,charge transfer complex ,theoretical study ,Charge-transfer complex ,Anti-Bacterial Agents ,030104 developmental biology ,Stability constants of complexes ,030220 oncology & carcinogenesis ,2,3-Dichloro-5,6-dicyano-1,4-benzoquinone ,Physical chemistry ,Spectrophotometry, Ultraviolet ,Antibacterial activity ,Stoichiometry - Abstract
Tarek A Yousef,1,2 Essam Ezzeldin,3,4 Hatem A Abdel-Aziz,5 Mohamed H Al-Agamy,6,7 Gamal AE Mostafa3,5 1College of Science, Chemistry Department, Imam Mohammad Ibn Saud Islamic University (IMSIU), Riyadh 11623, Kingdom of Saudi Arabia; 2Department of Toxic and Narcotic Drug, Forensic Medicine, Mansoura Laboratory, Medicolegal Organization, Ministry of Justice, Mansoura, Egypt; 3Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia; 4Bioavailability Laboratory, Central Laboratory, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia; 5Applied Organic Chemistry Department, National Research Center, Cairo 12622, Egypt; 6Department of Pharmaceutics, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia; 7Department of Microbiology and Immunology, Faculty of Pharmacy, Al-Azhar University, Cairo, EgyptCorrespondence: Gamal AE Mostafa Email gmostafa@ksu.edu.saBackground: Electron donor–acceptor interactions are important molecular reactions for the activity of pharmacological compounds. The aim of the study is to develop a charge transfer (CT) complex: synthesis, characterization, antimicrobial activity, and theoretical study.Method and Results: A solid CT complex of neostigmine (NSG) with 2,3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ) was synthesized and characterized by infrared spectra, NMR, and UV–visible spectroscopy. The results confirm the formation of a CT complex. The stability of the CT complex between NSG and DDQ in acetonitrile was determined in solution via spectrophotometric measurement, ie, by calculating the formation constant, molar extinction coefficient, and different spectroscopic parameters. The stoichiometry of the formed NSG–DDQ complex was determined using Job’s method. The absorption band of the NSG–DDQ complex can be used for the quantification of NSG.Conclusion: The DFT geometry optimization of NSG, DDQ, and the CT complex and the UV comparative study of both theoretical and experimental structures are presented. The experimental results confirm the charge transfer structure. The bacterial study shows that the NSG–DDQ complex has good antibacterial activity against both Gram-positive and Gram-negative bacteria as well as antifungal activity against Candida albicans.Keywords: charge transfer complex, neostigmine, DDQ, synthesis, spectroscopic, characterization, antimicrobial activity, theoretical study
- Published
- 2020
36. Synthesis, structure elucidation, and antifungal potential of certain new benzodioxole–imidazole molecular hybrids bearing ester functionalities
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Mohamed H. Al-Agamy, Alwah R. Al-Ghamdi, Mohamed I. Attia, Reem I. Al-Wabli, and Hazem A. Ghabbour
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Pharmacology ,chemistry.chemical_classification ,Drug Design, Development and Therapy ,biology ,Stereochemistry ,Aspergillus niger ,Pharmaceutical Science ,Candida parapsilosis ,biology.organism_classification ,Candida tropicalis ,chemistry.chemical_compound ,Minimum inhibitory concentration ,chemistry ,Drug Discovery ,Moiety ,Imidazole ,Azole ,Derivative (chemistry) - Abstract
Reem I Al-Wabli,1 Alwah R Al-Ghamdi,1 Hazem A Ghabbour,2 Mohamed H Al-Agamy,3,4 Mohamed I Attia1,5 1Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia; 2Department of Medicinal Chemistry, Faculty of Pharmacy, Mansoura University, Mansoura 35516, Egypt; 3Department of Pharmaceutics, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia; 4Microbiology and Immunology Department, Faculty of Pharmacy, Al-Azhar University, Cairo 11884, Egypt; 5Medicinal and Pharmaceutical Chemistry Department, Pharmaceutical and Drug Industries Research Division, National Research Centre, Dokki, Giza 12622, Egypt Background: The incidence of fungal infections is a growing serious global health burden. There is an urgent medical demand to acquire new antifungal drug-like compounds having azole nuclei to get rid of the drawbacks of the currently available azole antifungal agents. Methods: The target compounds 5a-r were synthesized in a four-step reaction sequence using the appropriate acetophenone derivative as a starting material. The antifungal potential of the title compounds was assessed using DIZ and MIC assays according to the reported standard procedures. Results: The newly synthesized oximino esters 5a-r were identified with the aid of various spectroscopic approaches. Their assigned chemical structures were confirmed via single-crystal X-ray structure of compound 5o. The molecular structure of compound 5o was crystallized in the triclinic, P-1, a=9.898 (3) Å, b=10.433 (3) Å, c=11.677 (4) Å, α=86.886 (6)°, β=87.071 (7)°, γ=64.385 (6)°, V=1,085.2 (6) Å3, Z=2. The synthesized compounds 5a-r were in vitro evaluated for antifungal potential against four fungal strains. Compounds 5l and 5m bearing a trifluoromethylphenyl moiety showed the best anti-Candida albicans activity with minimum inhibitory concentration (MIC) value of 0.148 µmol/mL, while compound 5b displayed the best activity toward Candida tropicalis with MIC value of 0.289 µmol/mL. Compounds 5o and 5l were the most active congeners against Candida parapsilosis and Aspergillus niger, respectively. Conclusion: Single-crystal X-ray analysis of compound 5o confirmed without doubt the assigned chemical structures of the title compounds as well as confirmed the (E)-configuration of their oximino group. Compounds 5b, 5l, 5m, and 5o emerged as the most active compounds against the tested fungi and they could be considered as new antifungal lead candidates. Keywords: crystal structure, imidazole, benzodioxole, ester, antifungal
- Published
- 2019
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37. Structural, Spectroscopic, Electronic and Molecular Docking Studies on (11R ,12 S )-16-Aminotetracyclo[6.6.2.02,7 .09,14 ]hexadeca-2(7),3,5,9(14),10,12-hexaen-15-ol
- Author
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Yusuf Sert, Nuri Öztürk, Mohammed M. Alanazi, Mohamed H. Al-Agamy, Halil Gökce, Serdal Kaya, Adel S. El-Azab, Alaa A.-M. Abdel-Aziz, and Belirlenecek
- Subjects
Molecular docking study ,DFT/B3LYP computations ,Molecular geometry ,Materials science ,Spectroscopic studies ,Stereochemistry ,Hirshfeld surface analysis ,HOMO-LUMO analyses ,General Chemistry - Abstract
Alanazi, Mohammed/0000-0002-0483-8113; Gokce, Halil/0000-0003-2258-859X; , Nuri/0000-0001-8742-0160; Al-agamy, Mohamed/0000-0001-9868-0355 WOS: 000456717300009 Molecular structure analysis, vibrational and electronic spectroscopic studies and thermochemical features of (11R,12 S)-16-aminotetracyclo[6.6.2.0(2,7).0(9,14)]hexadeca-2(7),3,5,9(14),10,12-hexaen-15-ol were investigated via both theoretical and experimental techniques. Experimental investigations were made by using FT-IR, Raman, H-1 and C-13 NMR and UV-Vis. spectroscopies. To support experimental evidences, molecular electronic structure computations were obtained with the DFT/B3LYP method at the 6-311G++(3d,3p) basis set. 2D and 3D Hirshfeld surfaces studies were performed to understand non-bonding intermolecular interactions in solid phase crystal packing of the compound. MEP surface analysis was performed to investigate nucleophilic and electrophilic reactive sites of the compound. The highest occupied molecular orbitals (HOMOs) and lowest unoccupied molecular orbitals (LUMO) analyses were theoretically used for determination of electronic transitions corresponding to UV-Vis. electronic absorption wavelengths. Enzyme-ligand interactions between the compound with BACE1 (Beta-Secretase1) inhibitor were determined via molecular docking study. Deanship of Scientific Research at King Saud UniversityDeanship of Scientific Research at King Saud University [RGP-163] The authors extend their appreciation to the Deanship of Scientific Research at King Saud University for funding the work through the research group project No. RGP-163.
- Published
- 2019
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38. First reported nosocomial outbreak of Serratia marcescens harboring blaIMP-4 and blaVIM-2 in a neonatal intensive care unit in Cairo, Egypt
- Author
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Dalia Kadry Ismail, Marie Fe F. Bohol, Islam Yousif Mostafa, Doaa Ghaith, Mohammed N. Al-Ahdal, Mohamed H. Al-Agamy, Mai M. Zafer, Sherif M. Elnagdy, and Ahmed A. Al-Qahtani
- Subjects
0301 basic medicine ,Pharmacology ,Neonatal intensive care unit ,medicine.diagnostic_test ,030106 microbiology ,Outbreak ,biochemical phenomena, metabolism, and nutrition ,Biology ,bacterial infections and mycoses ,biology.organism_classification ,Intensive care unit ,Meropenem ,law.invention ,Microbiology ,03 medical and health sciences ,Infectious Diseases ,law ,Serratia marcescens ,polycyclic compounds ,medicine ,Pulsed-field gel electrophoresis ,Pharmacology (medical) ,Blood culture ,Typing ,medicine.drug - Abstract
Introduction Serratia marcescens is a significant hospital-acquired pathogen, and many outbreaks of S. marcescens infection have been reported in neonates. We report a sudden breakout of S. marcescens harboring the bla IMP-4 and bla VIM-2 metallo-β-lactamase (MBL) genes that occurred from March to August 2015 in the neonatal intensive care unit of Cairo University Hospital, Cairo, Egypt. Methods During the study period, 40 nonduplicate clinical isolates of S. marcescens were collected from blood culture samples. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry was used to identify each isolate. Then, minimum inhibitory concentrations of different antibiotics were assessed by the Vitek 2 compact system. Screening of the MBL genes bla IMP, bla VIM, bla SIM-1, bla SPM-1, and bla GIM-1 as well as the carbapenemase genes KPC, NDM, OXA-48, SME-1, and SME-2 were evaluated. Pulsed field gel electrophoresis was preformed to detect the genetic relationship of the isolates. Results Analysis showed that 37.5% of the S. marcescens clinical isolates were resistant to meropenem (minimum inhibitory concentrations ≥ 2 µg/mL), and bla IMP-4 and bla VIM-2 were the most prevalent MBL genes (42.5% and 37.5%, respectively). None of the other investigated genes were observed. Pulsed field gel electrophoresis typing revealed two discrete clones; 33/40 (82.5%) were pulsotype A and 7/40 (17.5%) were pulsotype B. Conclusion Here, we report for the first time the detection of MBL-producing S. marcescens isolates, particularly IMP-4 and VIM-2 recovered from inpatients with bacteremias from the intensive care unit at Cairo University Hospital.
- Published
- 2018
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39. (2 E )-2-[1-(1,3-Benzodioxol-5-yl)-3-(1 H -imidazol-1-yl)propylidene]- N -(4-methoxyphenyl)hydrazinecarboxamide: Synthesis, crystal structure, vibrational analysis, DFT computations, molecular docking and antifungal activity
- Author
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I.P. Primsa, Alwah R. Al-Ghamdi, I. Hubert Joe, Mohamed I. Attia, Reem I. Al-Wabli, Hazem A. Ghabbour, and Mohamed H. Al-Agamy
- Subjects
chemistry.chemical_classification ,Double bond ,010405 organic chemistry ,Stereochemistry ,Organic Chemistry ,Imine ,Crystal structure ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,Inorganic Chemistry ,chemistry.chemical_compound ,chemistry ,Imidazole ,Molecule ,HOMO/LUMO ,Spectroscopy ,Monoclinic crystal system ,Natural bond orbital - Abstract
Fungal infections are a growing health threat to mankind. The development of novel potent antifungal agents is a challenge to overcome the resistance to the available antifungal medications. The current report focuses on the synthesis and spectroscopic characterization of a new imidazole-bearing antifungal agent. The vibrational characteristics of the title compound are explored using Fourier transform infrared and Raman spectroscopy with the aid of density functional theory. Highest occupied and lowest unoccupied molecular orbital investigations and natural bond orbital analysis of the title molecule are performed to investigate the possible intermolecular delocalisation or hyper-conjugation, and the possible interactions with the target protein. Single crystal X-ray analysis confirms the assigned (E)-configuration of the imine double bond structure of the title compound. The molecular structure of the title compound is crystallised in a monoclinic space group, namely, P21/c, a = 10.7007 (4) A, b = 7.3072 (3) A, c = 24.9088 (8) A, β = 97.178 (2)°, V = 1932.41 (12) A3 and Z = 4. The antifungal potential of the title compound is in vitro assessed against four fungal strains. In addition, molecular docking of the title molecule predicts its binding orientation in the active site of the target protein.
- Published
- 2018
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40. Evaluation of wound healing activity of henna, pomegranate and myrrh herbal ointment blend
- Author
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Fars K. Alanazi, Ehab M. Elzayat, Sayed H. Auda, and Mohamed H. Al-Agamy
- Subjects
0301 basic medicine ,Myrrh ,Pharmaceutical Science ,medicine.disease_cause ,Excision biopsy ,Article ,03 medical and health sciences ,0302 clinical medicine ,Dermis ,Fibrosis ,medicine ,Pharmacology ,biology ,Traditional medicine ,business.industry ,lcsh:RM1-950 ,Granulation tissue ,biology.organism_classification ,medicine.disease ,Antimicrobial ,030104 developmental biology ,medicine.anatomical_structure ,lcsh:Therapeutics. Pharmacology ,Staphylococcus aureus ,030220 oncology & carcinogenesis ,business ,Wound healing - Abstract
This study assessed the wound healing potential and antimicrobial activity of henna, pomegranate and myrrh extract formulations and their blend in excision, and dead space wound models in rats in comparison to a marketed ointment (gentamycin). The natural extracts were used in ointment formulations alone or in a combination of three extracts at a total concentration of 15% w/w in medications. The percent of wound contraction in case of henna, myrrh, pomegranate, the blend and gentamycin (10 mg/kg) were 85.90–98.5%, 88.35–99.52%, 93.55–100%, 97.30–100%, and 90.25–100% from days 16 to 20, respectively. The blended formulation showed the highest increase in the percent of wound contraction and decrease in the epithelisation period compared to other formulations and showed comparable results to the standard ointment. The histological studies of excision biopsy at day 24 showed healed skin structures with normal epithelisation, the restoration of adnexa and fibrosis within the dermis in all of the formulation- and gentamycin-treated groups while the control group lagged behind in the formation of the amount of ground substance in the granulation tissue. The formulations showed antimicrobial activity against Candida, Staphylococcus aureus, mucous membrane infections and E. coli topical infections. The study proved the wound healing potential and antimicrobial activity of the herbal extract. Keywords: Wound healing, Henna, Pomegranate, Myrrh, Hydrophilic ointment, Herbal extract
- Published
- 2018
41. Cooccurrence of NDM-1, ESBL, RmtC, AAC(6′)-Ib, and QnrB in Clonally Related Klebsiella pneumoniae Isolates Together with Coexistence of CMY-4 and AAC(6′)-Ib in Enterobacter cloacae Isolates from Saudi Arabia
- Author
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Taghrid S. El-Mahdy, Mohamed H. Al-Agamy, Laurent Poirel, and Hesham H. Radwan
- Subjects
0301 basic medicine ,Article Subject ,Klebsiella pneumoniae ,030106 microbiology ,lcsh:Medicine ,Drug resistance ,Tigecycline ,General Biochemistry, Genetics and Molecular Biology ,Microbiology ,03 medical and health sciences ,0302 clinical medicine ,Plasmid ,medicine ,030212 general & internal medicine ,Genotyping ,General Immunology and Microbiology ,biology ,lcsh:R ,General Medicine ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,bacterial infections and mycoses ,Colistin ,Multilocus sequence typing ,Enterobacter cloacae ,medicine.drug - Abstract
The aim of this study was to investigate the mechanisms responsible for resistance to antimicrobials in a collection of enterobacterial isolates recovered from two hospitals in Saudi Arabia. A total of six strains isolated from different patients showing high resistance to carbapenems was recovered in 2015 from two different hospitals, with four being Klebsiella pneumoniae and two Enterobacter cloacae. All isolates except one K. pneumoniae were resistant to tigecycline, but only one K. pneumoniae was resistant to colistin. All produced a carbapenemase according to the Carba NP test, and all were positive for the EDTA-disk synergy test for detection of MBL. Using PCR followed by sequencing, the four K. pneumoniae isolates produced the carbapenemase NDM-1, while the two E. cloacae isolates produced the carbapenemase VIM-1. Genotyping analysis by Multilocus Sequence Typing (MLST) showed that three out of the four K. pneumoniae isolates were clonally related. They had been recovered from the same hospital and belonged to Sequence Type (ST) ST152. In contrast, the fourth K. pneumoniae isolate belonged to ST572. Noticeably, the NDM-1-producing K. pneumoniae additionally produced an extended-spectrum ß-lactamase (ESBL) of the CTX-M type, together with OXA-1 and TEM-1. Surprisingly, the three clonally related isolates produced different CTX-M variants, namely, CTX-M-3, CTX-M-57, and CTX-M-82, and coproduced QnrB, which confers quinolone resistance, and the 16S rRNA methylase RmtC, which confers high resistance to all aminoglycosides. The AAC(6′)-Ib acetyltransferase was detected in both K. pneumoniae and E. cloacae. Mating-out assays using Escherichia coli as recipient were successful for all isolates. The blaNDM-1 gene was always identified on a 70-kb plasmid, whereas the blaVIM-1 gene was located on either a 60-kb or a 150-kb plasmid the two E. cloacae isolates, respectively. To the best of our knowledge, this is the first report of the coexistence of an MBL (NDM-1), an ESBL (CTX-M), a 16S rRNA methylase (RmtC), an acetyltransferase (AAC[6′]-Ib), and a quinolone resistance enzyme (QnrB) in K. pneumoniae isolates recovered from different patients during an outbreak in a Saudi Arabian hospital.
- Published
- 2019
42. Synthesis, structure elucidation, and antifungal potential of certain new benzodioxole-imidazole molecular hybrids bearing ester functionalities
- Author
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Reem I, Al-Wabli, Alwah R, Al-Ghamdi, Hazem A, Ghabbour, Mohamed H, Al-Agamy, and Mohamed I, Attia
- Subjects
Models, Molecular ,crystal structure ,Antifungal Agents ,Molecular Structure ,Imidazoles ,Esters ,Microbial Sensitivity Tests ,imidazole ,benzodioxole ,Candida albicans ,ester ,Benzodioxoles ,antifungal ,Original Research - Abstract
Background The incidence of fungal infections is a growing serious global health burden. There is an urgent medical demand to acquire new antifungal drug-like compounds having azole nuclei to get rid of the drawbacks of the currently available azole antifungal agents. Methods The target compounds 5a-r were synthesized in a four-step reaction sequence using the appropriate acetophenone derivative as a starting material. The antifungal potential of the title compounds was assessed using DIZ and MIC assays according to the reported standard procedures. Results The newly synthesized oximino esters 5a-r were identified with the aid of various spectroscopic approaches. Their assigned chemical structures were confirmed via single-crystal X-ray structure of compound 5o. The molecular structure of compound 5o was crystallized in the triclinic, P–1, a=9.898 (3) Å, b=10.433 (3) Å, c=11.677 (4) Å, α =86.886 (6)°, β =87.071 (7)°, γ =64.385 (6)°, V=1,085.2 (6) Å3, Z=2. The synthesized compounds 5a-r were in vitro evaluated for antifungal potential against four fungal strains. Compounds 5l and 5m bearing a trifluoromethylphenyl moiety showed the best anti-Candida albicans activity with minimum inhibitory concentration (MIC) value of 0.148 μmol/mL, while compound 5b displayed the best activity toward Candida tropicalis with MIC value of 0.289 μmol/mL. Compounds 5o and 5l were the most active congeners against Candida parapsilosis and Aspergillus niger, respectively. Conclusion Single-crystal X-ray analysis of compound 5o confirmed without doubt the assigned chemical structures of the title compounds as well as confirmed the (E)-configuration of their oximino group. Compounds 5b, 5l, 5m, and 5o emerged as the most active compounds against the tested fungi and they could be considered as new antifungal lead candidates.
- Published
- 2019
43. Cooccurrence of NDM-1, ESBL, RmtC, AAC(6')-Ib, and QnrB in Clonally Related
- Author
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Mohamed H, Al-Agamy, Taghrid S, El-Mahdy, Hesham H, Radwan, and Laurent, Poirel
- Subjects
Aged, 80 and over ,Male ,Enterobacteriaceae Infections ,Saudi Arabia ,Microbial Sensitivity Tests ,Middle Aged ,bacterial infections and mycoses ,beta-Lactamases ,Anti-Bacterial Agents ,Klebsiella Infections ,Klebsiella pneumoniae ,Bacterial Proteins ,Carbapenems ,Drug Resistance, Multiple, Bacterial ,RNA, Ribosomal, 16S ,Drug Resistance, Bacterial ,Enterobacter cloacae ,Humans ,Female ,Aged ,Research Article - Abstract
The aim of this study was to investigate the mechanisms responsible for resistance to antimicrobials in a collection of enterobacterial isolates recovered from two hospitals in Saudi Arabia. A total of six strains isolated from different patients showing high resistance to carbapenems was recovered in 2015 from two different hospitals, with four being Klebsiella pneumoniae and two Enterobacter cloacae. All isolates except one K. pneumoniae were resistant to tigecycline, but only one K. pneumoniae was resistant to colistin. All produced a carbapenemase according to the Carba NP test, and all were positive for the EDTA-disk synergy test for detection of MBL. Using PCR followed by sequencing, the four K. pneumoniae isolates produced the carbapenemase NDM-1, while the two E. cloacae isolates produced the carbapenemase VIM-1. Genotyping analysis by Multilocus Sequence Typing (MLST) showed that three out of the four K. pneumoniae isolates were clonally related. They had been recovered from the same hospital and belonged to Sequence Type (ST) ST152. In contrast, the fourth K. pneumoniae isolate belonged to ST572. Noticeably, the NDM-1-producing K. pneumoniae additionally produced an extended-spectrum ß-lactamase (ESBL) of the CTX-M type, together with OXA-1 and TEM-1. Surprisingly, the three clonally related isolates produced different CTX-M variants, namely, CTX-M-3, CTX-M-57, and CTX-M-82, and coproduced QnrB, which confers quinolone resistance, and the 16S rRNA methylase RmtC, which confers high resistance to all aminoglycosides. The AAC(6′)-Ib acetyltransferase was detected in both K. pneumoniae and E. cloacae. Mating-out assays using Escherichia coli as recipient were successful for all isolates. The blaNDM-1 gene was always identified on a 70-kb plasmid, whereas the blaVIM-1 gene was located on either a 60-kb or a 150-kb plasmid the two E. cloacae isolates, respectively. To the best of our knowledge, this is the first report of the coexistence of an MBL (NDM-1), an ESBL (CTX-M), a 16S rRNA methylase (RmtC), an acetyltransferase (AAC[6′]-Ib), and a quinolone resistance enzyme (QnrB) in K. pneumoniae isolates recovered from different patients during an outbreak in a Saudi Arabian hospital.
- Published
- 2019
44. Antibiotic Effect on Planktonic and Biofilm-Producing Staphylococci
- Author
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Wafaa E. Soliman, Hassan A. M. Samaha, and Mohamed H. Al-Agamy
- Subjects
0301 basic medicine ,biology ,Chemistry ,medicine.drug_class ,Hospitalized patients ,030106 microbiology ,Broth dilution ,Antibiotics ,Biofilm ,General Medicine ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,Microbiology ,03 medical and health sciences ,Tissue culture ,Antibiotic resistance ,Antibiotic effect ,medicine ,Bacteria - Abstract
The pathogenic effect of Staphylococci is due to extra-cellular factors and properties such as adherence and biofilm production. The nature of the biofilm and the physiological properties of biofilm-producing bacteria result in an inherent antibiotic resistance and require further investigation. Two hundred and sixty Staphylococcal strains were cultured from 600 clinical specimens obtained from hospitalized patients. Among these, 155 were identified as coagulase-positive (CPS) and 105 as coagulase-negative (CNS) staphylococci. Staphylococcal strains were tested for biofilm production using the tissue culture plate (TCP) method. TCP detection showed that of the 155 CPS, 124 (80%) were biofilm producers, while 63 (60%) of the 105 CNS were biofilm producers. Biofilm-producing strains were scanned by scanning electron microscope (SEM) to confirm biofilm formation, study biofilm production, and examine antibiotic effects on biofilm formation. Disc diffusion method was used to study resistance of planktonic and biofilm-forming cells to antibiotics. Planktonic cells were less resistant to antibiotics than biofilm-forming cells. Microbroth dilution method and a new BioTimer assay were used to determine antibiotic MICs affecting planktonic and biofilm cells. Both methods showed that the MICs for planktonic cells were less than that for biofilm cells. The BioTimer assay was therefore found to be sensitive, accurate, and reliable, with results in agreement with those from the broth dilution method and SEM.
- Published
- 2017
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45. Prevalence and risk factors of early fecal carriage of Enterococcus faecalis and Staphylococcus spp and their antimicrobial resistant patterns among healthy neonates born in a hospital setting in central Saudi Arabia
- Author
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Mohammed Ali M. Marie, Talat A. El-kersh, Mohamed H. Al-Agamy, Yazeed A. Al-Sheikh, and Ahmad A. Al Bloushy
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Male ,Methicillin-Resistant Staphylococcus aureus ,0301 basic medicine ,Staphylococcus aureus ,030106 microbiology ,Saudi Arabia ,lcsh:Medicine ,Microbial Sensitivity Tests ,Drug resistance ,medicine.disease_cause ,Staphylococcal infections ,Enterococcus faecalis ,Microbiology ,03 medical and health sciences ,Antibiotic resistance ,Risk Factors ,Staphylococcus epidermidis ,Drug Resistance, Multiple, Bacterial ,Drug Resistance, Bacterial ,Prevalence ,medicine ,Birth Weight ,Humans ,Prospective Studies ,Gram-Positive Bacterial Infections ,Oxacillin ,biology ,Cesarean Section ,business.industry ,lcsh:R ,Infant, Newborn ,General Medicine ,Staphylococcal Infections ,Delivery, Obstetric ,biology.organism_classification ,medicine.disease ,Methicillin-resistant Staphylococcus aureus ,Anti-Bacterial Agents ,Carriage ,Enterococcus ,Carrier State ,Streptomycin ,Original Article ,Female ,Gentamicins ,business - Abstract
Objectives: To investigate the prevalence, antibiotic resistant profiles, and risk factors of early fecal carriage of Enterococcus faecalis (E. faecalis) and staphylococci among 150 healthy Saudi neonates born in a hospital setting in central Saudi Arabia. Methods. This prospective study was conducted in Al-Bukayriyah General Hospital, Qassim, Saudi Arabia, between June 2012 and January 2013. The E. faecalis and Staphylococcus spp. isolates were identified manually, and Vitek2 system was used for identity confirmation at the species level and minimum inhibitory concentration-susceptibility testing. Results: Enterococcus faecalis (n=73) and Staphylococcus spp. (n=18) were recovered. Unlike staphylococci, E. faecalis colonization did not significantly vary from day one up to 7 days of life, regardless of the type of feeding, but it was relatively higher among vaginally versus cesarean delivery. Both Staphylococcus epidermidis ( S. epidermidis) and Staphylococcus aureus ( S. aureus) carriage increase as the body weight increases, and this difference was significant ( p =0.025) for S. epidermidis . High-level resistance in Gentamycin among E. faecalis isolates was 25% and 11% to Streptomycin. Thirty percent of S. epidermidis were resistant to oxacillin and exhibited multidrug-resistant (MDR) patterns of 5 resistant markers, which were also observed among 2/5 (40%) of Methicillin-resistant Staphylococcus aureus isolates. Conclusion: Enterococcus faecalis did not significantly vary in relation to type of delivery, age up to 7 days, and type of feeding. The neonatal fecal carriage of MDR isolates should be considered as a crucial reservoir to the further spread of antimicrobial resistance genes among hospitals, cross infections, and the community. Saudi Med J 2016; Vol. 37 (3): 280-287 doi: 10.15537/smj.2016.3.13871 How to cite this article El-Kersh TA, Marie MA, Al-Sheikh YA, Al-Agamy MH, Al Bloushy AA. Prevalence and risk factors of early fecal carriage of Enterococcus faecalis and Staphylococcus spp and their antimicrobial resistant patterns among healthy neonates born in a hospital setting in central Saudi Arabia. Saudi Med J 2016; 37: 280-287.
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- 2016
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46. Effect of Honey and Green Tea Solutions on Streptococcus mutans
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H Ka'abi, A Alwohaibi, Mohamed H. Al-Agamy, F Abdelmegid, and Fouad S Salama
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Male ,Saliva ,Oral Hygiene Index ,Tea ,biology ,DMF Index ,Mouthwashes ,food and beverages ,Honey ,General Medicine ,Saliva sample ,Green tea ,biology.organism_classification ,Streptococcus mutans ,Bacterial Load ,Random Allocation ,Cross-Sectional Studies ,Population Surveillance ,Humans ,Food science ,Child - Abstract
Objectives: The aim of this cross-sectional in vivo study was to assess the effect of green tea and honey solutions on the level of salivary Streptococcus mutans. Study design: A convenient sample of 30 Saudi boys aged 7–10 years were randomly assigned into 2 groups of 15 each. Saliva sample was collected for analysis of level of S. mutans before rinsing. Commercial honey and green tea were prepared for use and each child was asked to rinse for two minutes using 10 mL of the prepared honey or green tea solutions according to their group. Saliva samples were collected again after rinsing. The collected saliva samples were prepared and colony forming unit (CFU) of S. mutans per mL of saliva was calculated. Results: The mean number of S. mutans before and after rinsing with honey and green tea solutions were 2.28* 108(2.622*108), 5.64 *107(1.03*108), 1.17*109(2.012*109) and 2.59*108 (3.668*108) respectively. A statistically significant reduction in the average number of S. mutans at baseline and post intervention in the children who were assigned to the honey (P=0.001) and green tea (P=0.001) groups was found. Conclusions: A single time mouth rinsing with honey and green tea solutions for two minutes effectively reduced the number of salivary S. mutans of 7–10 years old boys.
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- 2015
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47. In vitro skin penetration and antimycotic activity of itraconazole loaded niosomes: Various non-ionic surfactants
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Abdullah H. Alomrani, Mohamed M. Badran, and Mohamed H. Al-Agamy
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chemistry.chemical_classification ,Materials science ,Chromatography ,integumentary system ,Pharmaceutical Science ,Penetration (firestop) ,Permeation ,medicine.anatomical_structure ,Chemical engineering ,chemistry ,Drug delivery ,Stratum corneum ,medicine ,Niosome ,Surface charge ,Particle size ,Alkyl - Abstract
The main objective of the present study was to explore different types of surfactants for formulating itraconazole (ITZ) loaded niosomes to improve its skin penetration. These surfactants vary in number and nature of the alkyl chains. The prepared niosomes were characterized in terms of particle size, surface charge, entrapment efficiency, skin penetration and antifungal activity. Brij (BR) 35 niosomes exhibited largest size, while the smallest size was observed in case of Spans and Tweens with tri-alkyl chains. The entrapment efficiency (EE%) of niosomes made of unsaturated alkyl chain surfactants was less than that one with saturated alkyl chain. Furthermore, tri-alkyl chains of niosomes showed higher EE% compared to mono-alkyl chain. Regarding skin permeation, Spans niosomes showed enhancement permeation of ITZ compared to ITZ solution; however, it was less in magnitude than that of Tweens. The niosomes made of tri-alkyl chains tend to accumulate more in stratum corneum (SC) and stripped skin with low amount of ITZ in receptor fluid. The highest amount of ITZ reached receptor fluid was observed in Tween 80 and 60 niosomes. The antifungal activity of ITZ was not compromised when ITZ being loaded into niosomes. It could be concluded that niosomes drug delivery systems are promising carriers for cutaneous targeted delivery of ITZ.
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- 2015
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48. Spread of carbapenem resistant Enterobacteriaceae at tertiary care cancer hospital in Egypt
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Hadir A. El-Mahallawy, Mai M. Zafer, Mai M. Ragab, Mohamed H. Al-Agamy, and Magdy A. Amin
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0301 basic medicine ,Microbiology (medical) ,medicine.medical_specialty ,Klebsiella pneumoniae ,030106 microbiology ,Carbapenem-resistant enterobacteriaceae ,Microbial Sensitivity Tests ,Cancer Care Facilities ,Tertiary care ,beta-Lactamases ,03 medical and health sciences ,Enterobacteriaceae ,Internal medicine ,medicine ,General Immunology and Microbiology ,biology ,business.industry ,Tertiary Healthcare ,Enterobacteriaceae Infections ,Cancer ,General Medicine ,biology.organism_classification ,medicine.disease ,Anti-Bacterial Agents ,Infectious Diseases ,Carbapenem-Resistant Enterobacteriaceae ,Carbapenems ,Egypt ,business - Abstract
To the Editor,We read with interest a recent report in the present journal on the spread of OXA-48-producing Klebsiella pneumoniae in central Europe [1]. The spread implicates a severe threat to th...
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- 2018
49. Synthesis, antimicrobial activity, pharmacophore modeling and molecular docking studies of new pyrazole-dimedone hybrid architectures
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Mohamed S. Ali, Bander M. Al-Qahtany, Mohamed H. Al-Agamy, Abdullah Mohammed Al-Majid, Zaheer Ul-Haq, Assem Barakat, Sehrish Naz, and Mohamed Teleb
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0301 basic medicine ,Diethylamine ,010405 organic chemistry ,Dimedone ,General Chemistry ,Pyrazole ,Antimicrobial activity ,Antimicrobial ,Structure activity relationship ,01 natural sciences ,Combinatorial chemistry ,Corpus albicans ,0104 chemical sciences ,Inhibition mechanism prediction ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,chemistry ,Docking (molecular) ,Structure–activity relationship ,Antifungal activity ,Pharmacophore ,Research Article - Abstract
Background Design and synthesis of pyrazole-dimedone derivatives were described by one-pot multicomponent reaction as new antimicrobial agents. These new molecular framework were synthesized in high yields with a broad substrate scope under benign conditions mediated by diethylamine (NHEt2). The molecular structures of the synthesized compounds were assigned based on different spectroscopic techniques (1H-NMR, 13C-NMR, IR, MS, and CHN). Results The synthesized compounds were evaluated for their antibacterial and antifungal activities against S. aureus ATCC 29213, E. faecalis ATCC29212, B. subtilis ATCC 10400, and C. albicans ATCC 2091 using agar Cup plate method. Compound 4b exhibited the best activity against B. subtilis and E. faecalis with MIC = 16 µg/L. Compounds 4e and 4l exhibited the best activity against S. aureus with MIC = 16 µg/L. Compound 4k exhibited the best activity against B. subtilis with MIC = 8 µg/L. Compounds 4o was the most active compounds against C. albicans with MIC = 4 µg/L. Conclusion In-silico predictions were utilized to investigate the structure activity relationship of all the newly synthesized antimicrobial compounds. In this regard, a ligand-based pharmacophore model was developed highlighting the key features required for general antimicrobial activity. While the molecular docking was carried out to predict the most probable inhibition and binding mechanisms of these antibacterial and antifungal agents using the MOE docking suite against few reported target proteins. Electronic supplementary material The online version of this article (10.1186/s13065-018-0399-0) contains supplementary material, which is available to authorized users.
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- 2018
50. Complex Clonal Diversity of Staphylococcus aureus Nasal Colonization among Community Personnel, Healthcare Workers, and Clinical Students in the Eastern Province, Saudi Arabia
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Mohamed Emara, Assem Barakat, Taghrid S. El-Mahdy, Mohamed H. Al-Agamy, and Richard V. Goering
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0301 basic medicine ,Adult ,Male ,Methicillin-Resistant Staphylococcus aureus ,Article Subject ,Hospitalized patients ,Health Personnel ,030106 microbiology ,Strain type ,education ,Saudi Arabia ,lcsh:Medicine ,Microbial Sensitivity Tests ,Biology ,medicine.disease_cause ,General Biochemistry, Genetics and Molecular Biology ,Microbiology ,03 medical and health sciences ,Health personnel ,Cefoxitin ,Young Adult ,medicine ,Humans ,Nasal colonization ,Students ,Clonal diversity ,Cross Infection ,General Immunology and Microbiology ,lcsh:R ,General Medicine ,Sequence types ,Middle Aged ,Staphylococcal Infections ,biochemical phenomena, metabolism, and nutrition ,bacterial infections and mycoses ,Anti-Bacterial Agents ,030104 developmental biology ,Staphylococcus aureus ,Female ,Nasal Cavity ,medicine.drug ,Research Article - Abstract
Here, 210 healthy participants including community personnel (70), clinical students (68), and healthcare workers (HCWs) (72) from the eastern region of Saudi Arabia were studied. Sixty-threeStaphylococcus aureusisolates were obtained from the nares of 37% of the community personnel and 26% of the clinical students and HCWs. Methicillin-resistantS. aureus(MRSA) was found in 16% (10 isolates) of the 63 isolates; six were from HCWs. Molecular characterization revealed high clonal diversity among the isolates, with 19 differentspatypes, 12 clonal complexes (CCs), and seven sequence types (STs) detected. The most common strain type was USA900, CC15, and t084, seen in 11 methicillin-susceptibleS. aureus(MSSA) isolates. Moreover, three novelspatypes in six isolates and one novel ST in two isolates were identified, most from HCWs. Interestingly, 29 isolates weremecA positive by PCR, whereas only 10 isolates were MRSA by disk diffusion (cefoxitin resistant). Of the 19 MSSAmecA-positive isolates, 16 were PBP2a negative, leaving three unique isolates from HCWs that weremecA and PBP2a positive yet cefoxitin susceptible. Our findings highlight the importance of phenotypically and genotypically characterizingS. aureusstrains isolated from healthy communities to monitor the risk of possible cross-transmission to hospitalized patients. The identified strains showed a clonal lineage relationship with previously reportedS. aureusand MRSA strains acquired from hospital settings.
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- 2018
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