8,941 results on '"Molecular analysis"'
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2. Updated taxonomy and new insights into the evolutionary relationships of the genus Sporonchulus Cobb, 1917 (Nematoda, Mononchida) after the study of two Vietnamese species
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Vu, Tam T.T., Nguyen, Duc-Anh, Linh, Le Thi Mai, Peña-Santiago, Reyes, and Pensoft Publishers
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18S ,28S-rDNA ,Description ,molecular analysis ,Morphology ,Phylogeny - Published
- 2024
3. Catalogue of fungi in China 2. <italic>Ramaria</italic> from northern China.
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Li, Ying, Mao, Ning, Zhang, Yu-Xing, Fu, Hao-Yu, and Fan, Li
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NUCLEAR DNA , *ADENOSINE triphosphatase , *SPECIES , *RIBOSOMAL DNA , *MITOCHONDRIA , *TAXONOMY - Abstract
The species of
Ramaria are coralloid-fungi with intricately branched and vividly coloured basidiomata. There are many studies on the genusRamaria in China, but molecular phylogenetic analysis is rarely employed. In this study, we performed a multigene phylogenetic analysis to identifyRamaria species in Shanxi Province of northern China. Phylogenetic analyses based on four loci, the internal transcribed spacer region of nuclear ribosomal DNA (ITS), the nuclear large subunit ribosomal DNA (nrLSU), ATPase subunit 6 (atp6 ), and mitochondrial small subunit ribosomal DNA (mtSSU), revealed 13Ramaria species from our collections. Combined with morphological examinations, 12 of them were identified as new species, plus a new report to China. The thirteen species were described and illustrated in this paper. [ABSTRACT FROM AUTHOR]- Published
- 2024
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4. Diversity of lice and flea‐ and lice‐borne pathogens in free‐ranging dogs in Uzbekistan.
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Panait, Luciana Cătălina, Safarov, Alisher, Deak, Georgiana, Ionică, Angela Monica, and Mihalca, Andrei Daniel
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FLEAS , *LICE , *CANIS , *BARTONELLA , *ANIMAL health , *NEOSPORA caninum , *ECTOPARASITES - Abstract
Vector‐borne diseases pose a significant threat to human and animal health worldwide, with arthropods, including fleas and lice, acting as key vectors for transmitting various pathogens. In Uzbekistan, where millions of domestic dogs coexist with humans, the diversity of vector‐borne pathogens carried by ectoparasites remains largely unexplored. This study aimed to investigate the diversity and prevalence of lice and pathogens carried by fleas and lice collected from domestic dogs in Uzbekistan. Ectoparasites were collected from 77 dogs across five regions and subjected to morphological identification and molecular analysis. The 47 lice collected were identified as Trichodectes canis Fabricius, 1780 (Psocodea: Trichodectidae), Linognathus africanus Kellogg and Paine, 1911 (Psocodea: Linognathidae) and Bovicola bovis Linnaeus, 1758 (Phthiraptera: Trichodectidae), alongside with 197 fleas. Notably, L. africanus was detected for the first time on dogs worldwide. Molecular screening detected Rickettsia spp. in 27.9% fleas and 44.7% lice, Dipylidium caninum Linnaeus, 1758 (Cyclophyllidea: Dipylidiidae) in 1.5% of fleas and Bartonella spp. in 0.5% of fleas. Sequencing confirmed Rickettsia asembonensisMaina et al., 2016 (Rickettsiales: Rickettsiaceae), Rickettsia helvetica Beati et al., 1993 (Rickettsiales: Rickettsiaceae), Rickettsia monacensis Simser et al., 2019 (Rickettsiales: Rickettsiaceae), D. caninum and Bartonella clarridgeiae Lawson and Collins, 1996 (Hyphomicrobiales: Bartonellaceae). These findings highlight the potential role of dogs as reservoirs for vector‐borne pathogens and emphasises the need for further research to inform effective disease control strategies. [ABSTRACT FROM AUTHOR]
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- 2024
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5. Pleomorphic Parotid Adenoma in a Child Affected with Cri du Chat Syndrome: Clinical, Cytogenetic, and Molecular Analysis.
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Danesino, Cesare, Biglioli, Federico, Moneghini, Laura, Valli, Roberto, Olivieri, Carla, Testa, Barbara, Baldo, Chiara, Malacarne, Michela, and Guala, Andrea
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PLEOMORPHIC adenoma , *EPITHELIAL tumors , *PANCREATIC duct , *BENIGN tumors , *SALIVARY glands - Abstract
Salivary gland pleomorphic adenoma (SGPA) is the most common type of benign epithelial tumor; it is observed more commonly in females (with a female-to-male ratio of 1.43:1), and the age at diagnosis ranges between 40 and 59 years, with only 2% of cases diagnosed before age 18. Cri du Chat (CdC) is a rare syndrome caused by deletions of various sizes in the short arm of chromosome 5. Tumors in CdC patients are extremely rare: in Danish, Spanish, Australian, and Japanese groups of cases, no tumors have been reported, while a few cases have been described among 321 CdC patients collected in Italy and Germany. These cases all involve tumors that appear at a young age. We here report the case of a parotid pleomorphic adenoma in an 8-year-old boy with CdC. Exome analysis did not identify variants certainly significant for the development of SGPA. A CGH array, analyzed both in peripheral blood and tumor samples, failed to recognize anomalies previously associated with SGPA but identified a de novo duplication in 7p15.2, which contains part of a gene, SKAP2, in which the increased copy number is associated with the development of a different type of tumor such as pancreatic duct adenocarcinoma. The assumption that the duplication in 7p15.2 is relevant for the development of SGPA in our patient implies that CGH array studies must be included early in life in routine work-ups of CdC to identify CNVs with possible pathogenic roles for tumor development. This is particularly also relevant in relation to the severely impaired possibility for patients with CdC to report discomfort or pain related to tumor development. Constitutional CNVs in addition to the deletion in 5p should also be extensively studied to verify if their presence in some patients could explain why, in these cases, tumors develop at an age younger than expected. [ABSTRACT FROM AUTHOR]
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- 2024
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6. Enhancing guided bone regeneration with cross‐linked collagen‐conjugated xenogeneic bone blocks and membrane fixation: A preclinical in vivo study.
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An, Yin‐Zhe, Song, Young Woo, Thoma, Daniel S., Strauss, Franz J., and Lee, Jung‐Seok
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GUIDED bone regeneration , *VASCULAR endothelial growth factors , *CALCITONIN receptors , *OSTEOCALCIN , *CALVARIA - Abstract
Objective: To determine whether combining cross‐linked (CL) collagen‐integrated xenogeneic bone blocks stabilized with the fixation of resorbable collagen membranes (CM) can enhance guided bone regeneration (GBR) in the overaugmented calvarial defect model. Materials and Methods: Four circular defects with a diameter of 8 mm were prepared in the calvarium of 13 rabbits. Defects were randomly assigned to receive one of the following treatments: (i) non‐cross‐linked (NCL) porcine‐derived collagen‐embedded bone block covered by a CM without fixation (NCL + unfix group); (ii) NCL bone block covered by CM with fixation using bone‐tack (NCL + fix group); (iii) cross‐linked (CL) porcine‐derived collagen‐embedded bone block covered by CM without fixation (CL + unfix group); and (iv) CL bone block covered by CM with fixation using bone‐tack fixation (CL + fix group). The efficacy of GBR was assessed through histological and molecular analyses after 2 and 8 weeks. Results: At 2 weeks, there were no significant differences in histologically measured areas of newly formed bone among the groups. At 8 weeks, however, the CL + fix group exhibited a larger area of new bone (5.08 ± 1.09 mm2, mean ± standard deviation) compared to the NCL + unfix (1.62 ± 0.42 mm2; p <.0083), NCL + fix (3.97 ± 1.39 mm2) and CL + unfix (2.55 ± 1.04 mm2) groups. Additionally, the expression levels of tumour necrosis factor‐alpha, fibroblast growth factor‐2, vascular endothelial growth factor, osteocalcin and calcitonin receptor were significantly higher in the CL + fix group compared to the other three groups (p <.0083). Conclusion: Cross‐linked bone blocks stabilized with collagen membrane fixation can significantly enhance GBR. [ABSTRACT FROM AUTHOR]
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- 2024
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7. Molecular analysis of 31 cases with fetal skeletal dysplasia.
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Taşdemir, Ümit, Eyisoy, Ömer Gökhan, Gezer, Murad, Karaman, Ali, and Demirci, Oya
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BONE diseases , *FETAL ultrasonic imaging , *RETROSPECTIVE studies , *TERTIARY care , *MUSCULOSKELETAL system abnormalities , *GENETIC counseling , *CHROMOSOME abnormalities , *GENETIC variation , *CHEST diseases , *MEDICAL records , *ACQUISITION of data , *GESTATIONAL age , *MOLECULAR biology , *GENETIC mutation , *CASE studies , *SEQUENCE analysis , *FETUS - Abstract
The aim of this study was to describe the prenatal ultrasound findings of fetuses with skeletal dysplasia and to evaluate the genetic variations by molecular genetic analysis. Between August 1, 2018 and March 1, 2023, we conducted a retrospective case series at a tertiary referral center involving patients with fetal skeletal abnormalities. For cases referred for a possible diagnosis of fetal skeletal dysplasia, an ultrasound database and prenatal genetic counseling records were first searched. Terminated cases diagnosed with skeletal dysplasia by pathologic and radiologic findings and cases with skeletal dysplasia proven by postnatal clinical findings were included in the study. Between 2018 and 2023, a total of 64 cases were diagnosed as skeletal dysplasia based on radiologic findings, pathologic findings, and clinical features. The median week of the first ultrasound performed on patients is 19 0/7 weeks, while the median week of the ultrasound in which skeletal dysplasia is suspected is 21 3/7 weeks. Although micromelia was evaluated as a common feature in all cases, the most common concomitant anomaly was thoracic hypoplasia. Exome sequencing analysis was achieved in 31 (48 %) of cases. In 31 cases, in total of 35 pathogenic single gene mutations and 5 VUS (variants of uncertain significance) variants composing of 23 autosomal dominant, 10 autosomal recessive and 2 X linked recessive mutations were determined. Prenatal ultrasound findings can lead us to specific diagnoses, and with the appropriate molecular analysis method, a definitive diagnosis can be made without wasting time and money. [ABSTRACT FROM AUTHOR]
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- 2024
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8. Redescription of <italic>Rhabditis maupasi</italic> Seurat <italic>in</italic> Maupas, 1919 (Rhabditida: Rhabditidae) from northwest Iran.
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Vazifeh, Nasir, Niknam, Gholamreza, Abolafia, Joaquín, and Shokoohi, Ebrahim
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BAYESIAN field theory , *RHABDITIDAE , *RHABDITIDA , *VULVA , *MORPHOLOGY , *RIBOSOMAL DNA - Abstract
Rhabditis maupasi is re-described and reviewed based on morphological, morphometric, and molecular (D2-D3 expansion segment of the rDNA 28S) analysis collected from northwest Iran. The species is characterised by having a 1.1-1.9 mm long body, lateral fields with three incisures, the lip region offset by a depression, 12-15μ m wide, with six globular lips, the stoma rhabditoid, 14-20μ m long, with distinct cheilo-, gymno- and stegostom; cheilostom slightly cuticularised, gymno-promesostegostom a short tube with well-cuticularised walls, metastegostom with glottoid apparatus bearing small teeth, stomatal or pharyngeal collar covering 40-60% of stoma; pharynx well developed, the pharyngeal corpus consisting of a more or less cylindrical procorpus and swollen metacorpus (median bulb), basal bulb ovoid to pyriform, with grinder and narrow haustrulum, excretory pore at basal bulb level; vulva a transverse slit with protruding lips, the female tail conical-elongated (65-75μ m, c = 16-26, c′ = 2.0-2.5), the male tail conoid, ventrally arcuate (29-34μ m, c = 22-41, c′ = 0.7-1.0); spicules free, with pointed end and dagger-shaped, 61-72μ m long, bursa pseudopeloderan, and with eight pairs of genital papillae plus the phasmid, and gubernaculum 34-36μ m long. Furthermore, its relationship with four closely related species of the genus is discussed. A molecular phylogenetic study using a partial sequence of large subunit ribosomal DNA fragments revealed thatR. maupasi forms a clade withR. terricola , recorded previously from Iran. [ABSTRACT FROM AUTHOR]- Published
- 2024
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9. Molecular detection and characterization of Trichomonas gallinae isolated from ornamental birds in Tehran, Iran.
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Ahmadabad, Aida Ebrahimi, Shemshadi, Bahar, Momeni, Zohreh, and Nasrabadi, Nadia Taeifi
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GALLIFORMES , *RIBOSOMAL RNA , *GENETIC markers , *GENETIC variation , *BUDGERIGAR - Abstract
Trichomonas gallinae is a widespread protozoan parasite that primarily affects birds, causing a disease known as avian trichomonosis. The present study aimed to investigate the prevalence and genetic diversity of T. gallinae, a parasite causing avian trichomoniasis in feral pigeons, budgerigars, and finches in Tehran, Iran. The 5.8S ribosomal RNA locus, along with the internal transcribed spacer 2 (ITS2) region, has been extensively utilized for genotype identification and for determining inter- and intra-specific diversity. More recently, the Fe-hydrogenase (Fe-Hyd) gene has been suggested as an additional genetic marker to enhance the accuracy of strain subtyping discrimination. In the present study, a total of 12% (12/100) birds examined were infected with T. gallinae using microscopy and PCR methods. Infection was found in seven of 30 (23.3%) feral pigeons, three of 40 (7.5%) budgerigars, and two of 30 (6.66%) finches. Analysis of the ITS2 region of T. gallinae isolates revealed two highly similar sequences. The first sequence (GenBank: OQ689964-OQ689970) was found in five feral pigeons and two budgerigars, whereas the second sequence (GenBank: OQ689971-OQ689975) was identified in two feral pigeons, one budgerigar, and two finches. Phylogenetic analysis confirmed the presence of two distinct clusters (cluster I and cluster II) within the trichomonads based on the ITS2 region. However, further analysis using Fe-Hyd revealed greater diversity, with three subtypes identified (A1, A2, and C1). One isolate identified in the present study (GenBank accession number: OQ694508.1) belonged to subtype A1. Combining ITS2 and Fe-Hyd markers holds promise for a more comprehensive understanding of the population structure of T. gallinae and the potential role of ITS2 in host adaptation. [ABSTRACT FROM AUTHOR]
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- 2024
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10. Identification of Pathogenic Fungi Causing Postharvest Disease of Banana Fruit (Musa acuminata Cavendish Subgroup) in Ho Chi Minh City, Vietnam.
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Nguyen, Quoc‐Duy, Dang, Duy Hung, Nguyen Ngoc, Thanh Tuyen, Pham, Quoc Dang, Nguyen, Vinh Lam, and Do, Anh Duy
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POSTHARVEST diseases , *BOTRYODIPLODIA theobromae , *IDENTIFICATION of fungi , *FRUIT rots , *PATHOGENIC fungi , *BANANAS - Abstract
Banana (Musa acuminata Cavendish Subgroup) cultivation plays a pivotal role in Vietnam's economy. However, the presence of postharvest diseases poses significant challenges as they adversely affect the quality and market value of the crop. The objective of this study was to identify the microbial strains responsible for these diseases through phylogenetic analysis and morphological characterisation. Four fungal isolates including Colletotrichum musae, C. gloeosporioides, Fusarium musae and Lasiodiplodia theobromae were identified as the primary causal agents of fruit rot in postharvest bananas. Re‐infection tests, which were conducted following Koch's postulates on banana samples, confirmed the isolates' significant pathogenicity, leading to weight loss, colour alteration, firmness reduction and acidity changes in the fungal‐infected bananas. These findings hold profound implications for enhancing our understanding of banana diseases in the postharvest stage, which can contribute to the development of effective control measures and mitigation strategies in the future. [ABSTRACT FROM AUTHOR]
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- 2024
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11. Gammarus sezgini sp. nov. (Arthropoda, Amphipoda, Gammaridae), a new amphipod species from the Eastern Black Sea region of Türkiye.
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Baytaşoğlu, Hazel, Aksu, İsmail, and Özbek, Murat
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GENETIC distance , *ANTENNAS (Electronics) , *GAMMARUS , *SETAE , *AMPHIPODA - Abstract
A new amphipod species belonging to the genus Gammarus was identified in the rivers of the Eastern Black Sea Region of Türkiye: G. sezgini sp. nov. The authors described the new species using a taxonomic approach that combines morphological and molecular data. The newly identified species belongs to the G. komareki species complex because of the setation of antenna 2, pereopods 3 and 4, and the uropod 3. Some of its characteristic features are as follows: A medium-large species (holotype male, 9.8 mm). The body is yellowish; no dorsal keel or hump; eyes well developed, kidney-shaped; extremities not elongated; the second antenna bears numerous groups of long setae on the peduncle and flagellar segments; antennal gland cone long, not curved; the posterior margin of pereopod 3 is densely setose; the setae on the posterior edge of pereopod 4 are shorter and fewer in number; the anterior margins of pereopods 5 to 7 bear spines in the male; epimeral plates are not pointed. The newly identified species looks similar to G. komareki but differs from it by having a longer antennal gland cone, having fewer D-setae (33) in the third segment of the mandible palp, having shorter setae on the ventral part of the peduncular segment of the antenna 2, and having longer antenna 1, having fewer setae along the posterior margins of pereopods 3 and 4, and the absence of setae along the anterior margins of merus and carpus of pereopod 7. The new species is distinct from its relatives by high genetic distance (COI : 17.10% and 28S: 0.88%) and was resolved from them as an independent lineage with high support (ML : 78%, NJ : 70%, and BI : 1.0) in all phylogenetic results, based on the concatenated dataset (28S+ COI). Additionally, species delimitation analyses (ASAP and PTP) based on the COI gene supported the conclusion that the new species constitutes an independent lineage. Detailed descriptions and drawings of the male holotype and the female allotype are given, and the morphology of the newly identified species is compared with that of its relatives. [ABSTRACT FROM AUTHOR]
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- 2024
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12. Morphological and Molecular Analysis Describing Two New Species of Myxobolus (Cnidaria, Myxosporea) in Mugil curema (Mugilidae) from Brazil †.
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Vieira, Diego Henrique Mirandola Dias, Osaki-Pereira, Melissa Miyuki, Abdallah, Vanessa Doro, Oliveira, Sarah Letícia Paiva, Duarte, Aline Gabriely Torres, da Silva, Reinaldo José, and de Azevedo, Rodney Kozlowiski
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RIBOSOMAL DNA , *MOLECULAR phylogeny , *GRAY mullets , *CNIDARIA , *LAGOONS , *CLADISTIC analysis - Abstract
We present descriptions of two newly discovered species of Myxobolus (Myxobolidae) that infect Mugil curema: Myxobolus mundauensis n. sp. found in gills and Myxobolus patriciae n. sp. found in intestines. These descriptions are based on the morphology of myxospores, histological analysis, and sequencing of the small subunit ribosomal DNA (ssrDNA). The myxospores of both species differ in the width and length of their spore bodies, and their ssrDNA sequences showed a 10.6% difference. These findings support the identification of these parasites as distinct and previously unknown species. Phylogenetic analysis revealed a subclade consisting of species that parasitize Mugiliformes, with Myxobolus mundauensis n. sp. being closely related to Myxobolus maceioensis, and Myxobolus patriciae n. sp. being closely related to Myxobolus curemae. Our analysis aligns with previous research suggesting a strong correlation between host orders and phylogenetic patterns within the Myxobolidae family. [ABSTRACT FROM AUTHOR]
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- 2024
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13. A 13-Year-Old Girl Affected by Melanocytic Tumors of the Central Nervous System—The Case.
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Nowosławska, Emilia, Zakrzewska, Magdalena, Sikorska, Beata, Zakrzewski, Jakub, and Polis, Bartosz
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OPTIC disc edema , *MELANOMA , *INTRACRANIAL tumors , *BRAIN tumors , *SPINAL cord - Abstract
Primary intracranial melanoma is a very rare brain tumor, especially when accompanied by benign intramedullary melanocytoma. Distinguishing between a primary central nervous system (CNS) lesion and metastatic melanoma is extremely difficult, especially when the primary cutaneous lesion is not visible. Here we report a 13-year-old girl admitted to the Neurosurgery Department of the Institute of Polish Mother's Health Centre in Lodz due to upper limb paresis. An intramedullary tumor of the cervical C3–C4 and an accompanying syringomyelic cavity C1–C7 were revealed. The child underwent partial removal of the tumor due to the risk of damage to spinal cord motor centers. The removed part of the tumor was diagnosed as melanocytoma. Eight months later, a neurological examination revealed paresis of the right sixth cranial nerve, accompanied by bilateral optic disc edema. Diagnostic imaging revealed a brain tumor. The girl underwent resection of both detected the tumors and an additional satellite lesion revealed during the surgery. The removed tumors were diagnosed as malignant melanomas in pathomorphological examination. Molecular analysis revealed NRASQ61K mutation in both the intracranial and the intramedullary tumor. It should be noted that in cases where available evidence is inconclusive, an integrative diagnostic process is essential to reach a definitive diagnosis. [ABSTRACT FROM AUTHOR]
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- 2024
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14. Characterisation of four species of the genus Acrobeloides Cobb, 1924 (Rhabditida, Cephalobidae) from xeric areas in Spain, with revision of the genus and restoration of Paracephalobus Akhtar, 1962.
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Abolafia, Joaquín, Robles, María-Cristina, and Ruiz-Cuenca, Alba N.
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New material of four Acrobeloides species (Acrobeloides arenicola , Acrobeloides bodenheimeri , Acrobeloides nanus and Acrobeloides tricornis) are redescribed from xeric areas in Spain. This species are morphological (based on light microscopy and scanning electron microscopy study) and morphometrically differentiated in two groups. One of them, including A. arenicola , A. nanus and A. tricornis (belonging to the buetschli -group), are characterised by having smaller body, lip region with labial probolae having rectangular base, pharynx with long isthmus, female genital system scarcely developed with vulva midventral, and usually males absent, these with small spicules. Other species group, including A. bodenheimeri (belonging to the maximus -group), is characterised by having longer body, lip region with triangular base, pharynx with very short isthmus, female genital system well developed with vulva usually located ventrolateral, and males frequent with large and robust spicules. This division is corroborate with molecular analyses based on 18S and 28S rDNA. According to this, the separation of the genus Acrobeloides in two different genera is proposed. As Paracephalobus litoralis is morphologically similar to the species of the maximus -group, the genus Paracephalobus is restored to name the species included in the maximus -group. An updated list of species for the genera Acrobeloides and Paracephalobus is included. In addition, Acrobeloides insignis , A. sexlineatus , A. thornei and A. varius are proposed new junior synonyms of A. tricornis. [ABSTRACT FROM AUTHOR]
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- 2024
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15. Antifungal Potential of Selected Plant Extracts on Pathogenic Post-Harvest Fungi Causing Tuber Rot in Ipomoea batatas (L.) Lam. (Sweet Potato).
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Ewekeye, Tolulope S., Fashina, Esther A., Muhammed, Sikiru M., Adebayo, Abdulrazak O., Fagbohunlu, Omobosola B., Esan, Oyekunle O., and Oke, Oyedamola A.
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PLANT extracts ,ANTIOXIDANTS ,MEDICINAL plants ,OXIDATIVE stress ,HISTOPATHOLOGY - Abstract
Post-harvest deterioration limits the effective processing and utilization of Ipomoea batatas L. (sweet potato). This study identified the fungi associated with post-harvest tuber rot of I. batatas from selected markets in Lagos, Nigeria, and the antifungal efficacy of selected plant extracts in treating this disease. Sweet potato tubers collected from local markets in Iyana-Iba and Okokomaiko were observed for rot diseases. Isolation, identification, and characterization of fungi and pathogenicity tests were carried out on the specimens collected from the markets. Five fungi were isolated from the diseased tuber, they were identified as Aspergillus aculeatus, Aspergillus flavus, Fusarium sp., Lasiodiplodia theobromae and Penicillium oxalicum. The pathogenicity test revealed that only A. aculeatus and P. oxalicum induced rot in healthy sweet potato tubers 14 days after inoculation, with P. oxalicum being the most virulent. The molecular analysis confirmed the identity of the two virulent isolates as Penicillium oxalicum and Aspergillus aculeatus. The extracts of Parkia biglobosa, Pseudocedrela kotschyi, and Mezoneuron benthamianum exhibited antifungal potency on the fungi isolates. P. kotschyi against A. aculeatus at 20mg/ml had the highest inhibitory zone of 18.17±0.76 for n-hexane extract while against P. oxalicum at the same concentration, the highest inhibitory zone of 25.00±1.00 was recorded. Hence, the recommendation of the use of these plant extracts product as a substitute to synthetic antifungal agents for controlling the growth of fungi causing post-harvest tuber rot of I batatas. [ABSTRACT FROM AUTHOR]
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- 2024
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16. Correlation of sperm motility, acrosome integrity, protamine deficiency, and DNA fragmentation in proven and unproven Friesian Holstein bulls.
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Handarini, Ristika, Baharun, Abdullah, Rahmi, Annisa, Sudrajat, Deden, Anggraeni, Anggraeni, Nurcholis, Nurcholis, Iskandar, Hikmayani, Maulana, Tulus, Kaiin, Ekayanti Mulyawati, Anwar, Saiful, and Said, Syahruddin
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SEMEN analysis ,SPERM motility ,FLUORESCEIN isothiocyanate ,ARTIFICIAL insemination ,CELL membranes ,FROZEN semen ,ACRIDINE orange - Abstract
Objective: The evaluation of frozen semen quality is an essential aspect in determining male fertility for artificial insemination programs. This study aims to evaluate the characteristics of Friesian Holstein (FH) bull-frozen semen in different classes (proven and unproven) based on protein profiling and molecular evaluation. Materials and Methods: This study used frozen semen straws from FH bulls selected according to criteria for proven (6 individuals) and unproven (6 individuals) bulls produced by the Singosari AI Center (AIC). Sperm motility parameters were assessed using Computer Assisted Semen Analysis (CASA Supervision®, Germany), while sperm viability and abnormality were evaluated through eosin-nigrosin staining under a microscope at 400' magnifications. The integrity of the sperm plasma membrane was determined using the hypoosmotic swelling test, and acrosome integrity was analyzed using the fluorescein isothiocyanate PNA-propidium iodide staining method. Protamine deficiency was quantified using Chromomycin A3 fluorescence staining, while DNA fragmentation was assessed using the acridine orange technique. Results: The findings demonstrated that there were no statistically significant differences (p > 0.05) in the assessed parameters of frozen semen quality between FH-proven and unproven bulls. Furthermore, in FH-proven bulls, a negative correlation was observed between protamine deficiency and acrosome integrity (r = -0.528) and between protamine deficiency and sperm DNA fragmentation (r = -0.467). The parameters of protamine deficiency in unproven bulls exhibited a positive correlation with sperm progressive motility. Conclusion: The frozen semen quality of FH bulls in different classes (proven and unproven) was found to be equally good. Molecular-based analysis allows for a more accurate determination of semen quality. These findings are significant for bull breeding stations when comprehensively evaluating semen quality. [ABSTRACT FROM AUTHOR]
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- 2024
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17. Catalogue of fungi in China 2. Ramaria from northern China
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Ying Li, Ning Mao, Yu-Xing Zhang, Hao-Yu Fu, and Li Fan
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Coralloid-fungi ,Gomphales ,molecular analysis ,taxonomy ,Biology (General) ,QH301-705.5 ,Microbiology ,QR1-502 - Abstract
The species of Ramaria are coralloid-fungi with intricately branched and vividly coloured basidiomata. There are many studies on the genus Ramaria in China, but molecular phylogenetic analysis is rarely employed. In this study, we performed a multigene phylogenetic analysis to identify Ramaria species in Shanxi Province of northern China. Phylogenetic analyses based on four loci, the internal transcribed spacer region of nuclear ribosomal DNA (ITS), the nuclear large subunit ribosomal DNA (nrLSU), ATPase subunit 6 (atp6), and mitochondrial small subunit ribosomal DNA (mtSSU), revealed 13 Ramaria species from our collections. Combined with morphological examinations, 12 of them were identified as new species, plus a new report to China. The thirteen species were described and illustrated in this paper.
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- 2024
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18. A survey of the prevalence and genotypes of Cryptosporidium spp. and Giardia duodenalis in shelter dogs in Batman, Turkey
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B. Aslan Çelik, R. Yılmaz, T. Çiftçi, Ö. Y. Çelik, A. Ayan, Ö. Orunç Kılınç, G. Akyıldız, K. Ercan, and Ö. Oktay Ayan
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assemblage ,batman (turkey) ,cryptosporidium spp. ,giardia duodenalis ,molecular analysis ,Veterinary medicine ,SF600-1100 - Abstract
Cryptosporidium spp. and Giardia duodenalis are opportunistic zoonotic protozoan parasites related to diarrhea in humans and many mammals. This study aimed to determine the prevalence and geno-types of Cryptosporidium spp. and Giardia duodenalis in shelter dogs in Batman province. The ani-mal material of the study consisted of 100 dogs of different breeds and sexes. Fresh fecal samples taken from the dogs were examined under the microscope by Kinyoun Acid Fast staining for Crypto-sporidium spp. and by the native-Lugol method for Giardia. DNA extraction, nested PCR analysis, and sequence analysis were then performed. As a result of the analyses, all samples were negative for Cryptosporidium spp., while Giardia duodenalis was positive in 2% (2/100) of two female dogs less than one-year-old. Sequence analyses of PCR-positive samples showed that the samples overlapped with assemblage C and D samples. Although these results show that shelter dogs in Batman province do not carry a risk for humans in terms of Cryptosporidium spp. and Giardia duodenalis, it is rec-ommended that repeated faecal examinations should be carried out as much as possible to determine the possible role of these parasites in human transmission.
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- 2024
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19. A SURVEY OF THE PREVALENCE AND GENOTYPES OF CRYPTOSPORIDIUM SPP. AND GIARDIA DUODENALIS IN SHELTER DOGS IN BATMAN, TURKEY.
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ÇELIK, B. ASLAN, YILMAZ, R., ÇIFTÇI, T., ÇELIK, Ö. Y., AYAN, A., KILINÇ, Ö. ORUNÇ, AKYILDIZ, G., ERCAN, K., and AYAN, Ö. OKTAY
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FEMALE dogs , *CRYPTOSPORIDIUM , *SEQUENCE analysis , *GIARDIA , *PROTOZOA , *PARASITES - Abstract
Cryptosporidium spp. and Giardia duodenalis are opportunistic zoonotic protozoan parasites related to diarrhea in humans and many mammals. This study aimed to determine the prevalence and genotypes of Cryptosporidium spp. and Giardia duodenalis in shelter dogs in Batman province. The animal material of the study consisted of 100 dogs of different breeds and sexes. Fresh fecal samples taken from the dogs were examined under the microscope by Kinyoun Acid Fast staining for Cryptosporidium spp. and by the native-Lugol method for Giardia. DNA extraction, nested PCR analysis, and sequence analysis were then performed. As a result of the analyses, all samples were negative for Cryptosporidium spp., while Giardia duodenalis was positive in 2% (2/100) of two female dogs less than one-year-old. Sequence analyses of PCR-positive samples showed that the samples overlapped with assemblage C and D samples. Although these results show that shelter dogs in Batman province do not carry a risk for humans in terms of Cryptosporidium spp. and Giardia duodenalis, it is recommended that repeated faecal examinations should be carried out as much as possible to determine the possible role of these parasites in human transmission. [ABSTRACT FROM AUTHOR]
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- 2024
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20. Be bold, start cold! cold formalin fixation of colorectal cancer specimens granted superior DNA and RNA quality for downstream molecular analysis.
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Nano, Ennio, Gambella, Alessandro, Paudice, Michele, Garuti, Anna, Pigozzi, Simona, Valle, Luca, Grillo, Federica, and Mastracci, Luca
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NUCLEIC acids , *GENE expression , *POLYMERASE chain reaction , *COLORECTAL cancer , *FORMALDEHYDE - Abstract
The use of cold formalin fixation (CFF; i.e., fixating tissue samples with 4 °C precooled formalin) recently attracted further attention owing to its putative improved ability to preserve nucleic acid compared with standard room temperature formalin (SFF). In this study, we aimed to assess the effect of four formalin-based fixation protocols (SFF, CFF, delayed formalin fixation-DFF, and cold formalin hyperfixation; CFH) on both DNA and RNA quality. We collected 97 colorectal cancer (CRC) and analyzed 23 metrics of nucleic acid quantity and quality yield using a multiplatform approach by combining spectrophotometric, fluorimetric, electrophoretic, and polymerase chain reaction (PCR) assays. Following confirmation of fixation-protocol-related different effects via clustering analysis, CFF presented best metrics compared with all protocols, specifically positive coefficients of DV1000-60000, DV2/DV1, DNA λ ratio 260/230, and ABL gene expression absolute copies, and negative coefficient of DV150-1000. The SFF subgroup presented a positive coefficient of DV150-1000 and negative coefficients for DV1000-60000, DV2/DV1, RNA λ ratio 260/230, RNA QuBit concentration, DV100/200, RNA electrophoresis concentration and absolute quantity, and ABL copies. Overall, we confirmed the superior yield performances of CFF preservation for both DNA and RNA compared with the other protocols in our series of CRC samples. Pending further validations and clarification of the specific mechanisms behind these findings, our study supports the implementation of CFF in the pathology unit routine specimen management for tumor tissue molecular profiling. [ABSTRACT FROM AUTHOR]
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- 2024
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21. Anti-Cancer Efficacy of Niosomal Encapsulated Withania somnifera on Breast Cancer Cells: An in Vitro Study.
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Dawoud, Areej, Abidallah Aljaafreh, Baraah Suleiman, Elrotob, Abubaker, Alawadhi, Salah Ali, and Alorafi, Ehab y Ibrahim
- Abstract
Molecular analysis of breast cancer cells by niosomal encapsulated Withania somnifera (WS) extract is the focus of this investigation. Characterization of ASH-loaded niosomes produced by a thin film technique showed that they have an appropriate zeta potential, small particle size, and low polydispersity index. The concentration-dependent suppression of cell proliferation was seen in MCF-7 breast cancer cells treated with ASH-NIO, with an IC50 of 24.13 µM, and olaparib at values of 10.45 µM. Molecular investigation showed that ASH-NIO treated cells had lower levels of B-cell lymphoma 2 (Bcl2) mRNA expression compared to untreated cells, and upregulated levels of Tumor protein 53 (P53), Bcl-2-associated X protein (Bax), caspase-9, and caspase-3. These results provide more evidence that ASH-NIO has potential anti-cancer effects and may be useful as an adjunctive treatment for breast cancer. [ABSTRACT FROM AUTHOR]
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- 2024
22. Infection of Egyptian domestic rabbits, Oryctolagus cuniculus, with Cysticercus pisiformis (Cestoda: Taeniidae): morphological, molecular, and histopathological diagnostic tools.
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Rabie, Soheir A. H., Abuelwafa, Wafaa A., Eldin, Mouchira M. Mohi, and Hussein, Nermean M.
- Abstract
Cysticercosis raises the alarm for domestic rabbits since it has a significant impact on their health, productivity, and nutritional value. In this study, several white creamy- colored cysts were detected in the mesentery of the stomach and intestine, as well as embedded in the liver of domestic rabbits collected from Qena Governorate, Egypt. Based on both morphological and molecular assessments, revealed cysts could be identified as Cysticercus pisiformis, the larval stage of Taenia pisiformis. Gross and histopathological investigations of infected organs were documented. To our knowledge, this is the first geographical report on Cysticercus pisiformis in domestic rabbits in Qena Governorate, using current morphological, molecular, and histopathological methodologies that provide critical data for developing diagnostic targets for C. pisiformis. [ABSTRACT FROM AUTHOR]
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- 2024
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23. Tubenose goby Proterorhinus semipellucidus continues its spread in the Baltic Sea basin: first record from the temperate salmonid stream (Estonia)
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Imre Taal, Roland Svirgsden, Martin Kesler, Lauri Saks, Jürgen Karvak, Markus Vetemaa, and Andro Truuverk
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biological invasions ,molecular analysis ,pontocaspian gobies ,proterorhinus nasalis ,invasive species ,gulf of finland. ,Science - Abstract
The capture of the nonÂ-indigenous tubenose goby Proterorhinus semipellucidus in the Pada River (Baltic Sea basin) is reported. Previous records about the occurrence of this species in this region are restricted to the brackish coastal surfÂ-zone area. The finding implies that in the Baltic Sea region P. semipellucidus has started to invade from brackish coastal waters to freshwater tributaries of the Gulf of Finland.
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- 2024
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24. Morphological and Molecular Analysis Describing Two New Species of Myxobolus (Cnidaria, Myxosporea) in Mugil curema (Mugilidae) from Brazil
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Diego Henrique Mirandola Dias Vieira, Melissa Miyuki Osaki-Pereira, Vanessa Doro Abdallah, Sarah Letícia Paiva Oliveira, Aline Gabriely Torres Duarte, Reinaldo José da Silva, and Rodney Kozlowiski de Azevedo
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Myxobolus patriciae n. sp. ,Myxobolus mundauensis n. sp. ,phylogeny ,taxonomy ,Mundaú Lagoon ,molecular analysis ,Biology (General) ,QH301-705.5 - Abstract
We present descriptions of two newly discovered species of Myxobolus (Myxobolidae) that infect Mugil curema: Myxobolus mundauensis n. sp. found in gills and Myxobolus patriciae n. sp. found in intestines. These descriptions are based on the morphology of myxospores, histological analysis, and sequencing of the small subunit ribosomal DNA (ssrDNA). The myxospores of both species differ in the width and length of their spore bodies, and their ssrDNA sequences showed a 10.6% difference. These findings support the identification of these parasites as distinct and previously unknown species. Phylogenetic analysis revealed a subclade consisting of species that parasitize Mugiliformes, with Myxobolus mundauensis n. sp. being closely related to Myxobolus maceioensis, and Myxobolus patriciae n. sp. being closely related to Myxobolus curemae. Our analysis aligns with previous research suggesting a strong correlation between host orders and phylogenetic patterns within the Myxobolidae family.
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- 2024
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25. Long-read next-generation sequencing for molecular diagnosis of pediatric endocrine disorders
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Yoko Kuroki, Atsushi Hattori, Keiko Matsubara, and Maki Fukami
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gene ,molecular analysis ,mutation ,nanopore ,pacbio ,sequencer ,Pediatrics ,RJ1-570 - Abstract
Recent advances in long-read next-generation sequencing (NGS) have enabled researchers to identify several pathogenic variants overlooked by short-read NGS, array-based comparative genomic hybridization, and other conventional methods. Long-read NGS is particularly useful in the detection of structural variants and repeat expansions. Furthermore, it can be used for mutation screening in difficult-to-sequence regions, as well as for DNA-methylation analyses and haplotype phasing. This mini-review introduces the usefulness of long-read NGS in the molecular diagnosis of pediatric endocrine disorders.
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- 2024
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26. Integrative taxonomy reveals inflated biodiversity in the European Temnothorax unifasciatus complex (Hymenoptera: Formicidae)
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Csősz, Sándor, Alicata, Antonio, Báthori, Ferenc, Galkowski, Christophe, Schifani, Enrico, Yusupov, Zalimkhan, Herczeg, Gábor, and Prebus, Matthew M.
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- *
BIOLOGICAL classification , *GENETIC variation , *MOLECULAR phylogeny , *MULTIVARIATE analysis , *ANTS - Abstract
Temnothorax unifasciatus (Latreille, 1798) is a widely distributed pan‐European species from the Iberian Peninsula to the Caucasus. This taxon's relatively high morphological variability prompts the taxonomists of earlier times and today to mention the morphologically different elements at specific or subspecific ranks. This paper aims to understand the population structure and genetic diversity within this lineage via integrative taxonomy, incorporating molecular phylogenetics, species delimitation analyses and multivariate analyses of continuous morphometric data from across the geographic range of the T. unifasciatus complex. Phylogenetic analyses yielded incongruent trees. The genealogical diversity index (gdi) and the confirmatory analyses on morphological data found only weak, ambiguous delimitations within the unifasciatus complex. The most highly supported scenario splits T. brackoi from the remaining unifasciatus complex with ambiguous support (gdi = 0.56). This scenario is supported by multivariate morphometry with 100% accuracy in classification success. Instead, our results suggest complex morphological and genetic population structuring within the broad range of T. unifasciatus. Therefore, we confirm the validity of two species, T. brackoi Salata & Borowiec, 2019 and T. unifasciatus (Latreille, 1798), and propose five new junior synonymies, T. cordieri (Bondroit, 1918) syn. nov., T. tauricus (Ruzsky, 1902) syn. nov., T. berlandi (Bondroit, 1918) syn. nov., T. unifasciatus staegeri (Bondroit, 1918) syn. nov., T. tuberum ciscaucasicus (Arnol'di, 1977) syn. nov. with the latter. To achieve maximal taxonomic stability, we designated a lectotype for Temnothorax unifasciatus (Latreille, 1798). [ABSTRACT FROM AUTHOR]
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- 2024
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27. Primary Rectal Tumor With Extensive Choriocarcinoma Differentiation in a Woman With Lung, Liver and Disseminated Peritoneal Disease: A Primary Rectal Adenocarcinoma With Extensive Choriocarcinoma Differentiation or Primary Rectal Choriocarcinoma?
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Machado, Isidro, Martínez La Piedra, María del Carmen, Martínez de Juan, Fernando, de Alcántara, Fernanda-Maia, Claramunt, Reyes, López-Guerrero, José Antonio, Marhuenda, Ana, and Melian, Marcos
- Abstract
Primary rectal adenocarcinoma with extensive choriocarcinomatous differentiation is a rare neoplasm, with only sporadic cases reported worldwide. The prognosis is typically poor, and no standard therapy has been established for this tumor. We report a case of a 63-year-old woman who presented with lower abdominal and pelvic discomfort, as well as rectal bleeding. Endoscopy revealed a rectal tumor. She was diagnosed with primary rectal adenocarcinoma with extensive choriocarcinomatous differentiation, accompanied by liver metastasis and peritoneal carcinomatosis. The immunohistochemical profile demonstrated strong and diffuse positivity for keratin (AE1/AE3), beta-human chorionic gonadotropin (β-HCG), p53, MYC, p16, and Ki-67. Molecular analysis indicated mutations in KRAS, TP53, and PI3KCA. Despite the tumor's profile, the serum β-HCG level was not elevated. A chemotherapy regimen for metastatic colorectal adenocarcinoma was initiated, but there was a poor response, with rapid tumor progression. The patient survived for only 5 months postdiagnosis. We discuss the histopathological, immunohistochemical, and molecular findings, emphasizing their relevance to the differential diagnosis of neoplasms with choriocarcinomatous differentiation. [ABSTRACT FROM AUTHOR]
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- 2024
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28. A gastric invasive tubular adenocarcinomatous lesion arising from foveolar-type neoplasia: molecular histogenesis.
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Sugai, Tamotsu, Uesugi, Noriyuki, Hamada, Koichi, Nagahashi, Takayuki, Horikawa, Yoshinori, Suzuki, Masamichi, Sugimoto, Ryo, and Yanagawa, Naoki
- Abstract
Here, we report a rare case of a depressed lesion exhibiting both tubular differentiated adenocarcinomatous (TDA) and intraepithelial foveolar neoplasia (IFN) components (with the histological appearance of foveolar hyperplasia due to low-grade atypia). Histologically, the TDA surrounded the IFN, suggesting that the TDA may have originated from the IFN. Therefore, we examined molecular alterations in the TDA and IFN components separately. MUC5AC and MUC6 expression was observed immunohistochemically in both components. p53 expression was wild type in both components, suggesting no mutation of TP53. We investigated allelic imbalances at multiple loci (1p, 3p, 4p, 5q, 8q, 9p, 13q, TP53, 18q, and 22q), mutations (KRAS, BRAF, and GNAS), and DNA methylation and microsatellite status in both components using PCR-based analyses. Although multiple allelic imbalances were common to both components, allelic imbalances at 3p and TP53 were found only in the TDA component. No mutations were found, and DNA methylation status was low epigenotype for both components. Ultimately, this tumor was considered microsatellite stable. Considering the origin of TDA, which is frequently encountered in routine practice, IFN may develop into TDA. [ABSTRACT FROM AUTHOR]
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- 2024
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29. Phylogeny and historical biogeography of the southern African lacewing genus Afroptera (Neuroptera: Nemopteridae: Nemopterinae)
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Abdalla, Ishtiag H., Mansell, Mervyn W., Sole, Catherine L., and Daniel, Gimo M.
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BIOLOGICAL classification , *BIOGEOGRAPHY , *NEUROPTERA , *LACEWINGS , *AFRICAN diaspora , *PHYLOGENY , *RIBOSOMAL proteins - Abstract
The lacewing genus Afroptera Abdalla & Mansell (Neuroptera: Nemopteridae: Nemopterinae) is endemic to southern Africa, predominantly found in the Fynbos and Succulent Karoo biomes. The taxonomy of the genus has been recently resolved. However, the monophyly and evolutionary history of the genus has never been addressed. This study employs an integrative phylogenetic approach, by incorporating three ribosomal genes (16S, 28S and 18S) and two protein‐coding genes (cytochrome oxidase subunit I and carbamoyl‐phosphate synthetase‐aspartate transcarbamoylase‐dihydroorotase), and morphological data to examine the monophyly and historical biogeography of Afroptera. We use Bayesian, parsimony and maximum likelihood phylogenetic methods to assess the monophyly and relatedness of Afroptera within the Nemopterinae. We also use ancestral range reconstruction and diversification analysis to infer the historical biogeography of the genus. Our analyses reveal the genus as a monophyletic lineage. The genus Afroptera originated during the Pliocene (5.24–3.13 Mya) in a desert environment, experiencing rapid speciation during the Pleistocene, primarily within the Fynbos and Succulent biomes; and secondarily dispersed into the Nama Karoo and Savannah (Kalahari) biomes. The current distribution patterns of Afroptera species likely stem from intensified aridification in the southwest during the Plio‐Pleistocene, consistent with the dry‐adapted nature of Afroptera's ancestors. Therefore, our findings suggest a climatically driven diversification model for the genus Afroptera. [ABSTRACT FROM AUTHOR]
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- 2024
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30. Effect of dietary chitosan on the growth performance, intestinal histology and growth‐related gene expression in stellate sturgeon (Acipenser stellatus) juveniles.
- Author
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Zakeri, Donya, Pazooki, Jamileh, Mohseni, Mahmoud, and Jamshidi, Shirin
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- *
GENE expression , *NUTRITIONAL requirements , *REGRESSION analysis , *CHITOSAN , *SOMATOTROPIN - Abstract
As sturgeon breeding has proliferated, there has been a heightened demand for growth stimulators in their diets. This study aimed to determine the impact of dietary chitosan on growth performance, whole‐body proximate composition, growth‐related gene expression, and intestinal histology in juvenile Acipenser stellatus. A total of 180 A. stellatus juveniles with an average weight of 31.90 ± 0.73 g were fed with diets containing 0 (control), 1.5, 3.0, 4.5, and 6.0 g chitosan.kg−1 basic diet for eight weeks. The findings revealed a significant enhancement in growth performance with rising chitosan concentrations. Furthermore, chitosan supplementation upregulated the expression of the growth hormone gene in both brain and liver tissues. In liver samples, the most pronounced expression of the insulin‐like growth factor‐1 gene was noted at 6.0 g chitosan.kg−1, while in brain samples, peak expressions were observed in both the 4.5 and 6.0 g chitosan.kg−1 treatments. While the whole‐body proximate composition remained relatively stable, there was a notable decrease in whole‐body lipids with the escalation of chitosan dosage. Intestinal villi dimensions, both height and width, were amplified in the chitosan‐supplemented groups compared to controls. In summation, chitosan supplementation showed promise in bolstering growth performance, refining intestinal morphology, and enhancing growth‐related gene expression. Analysis of the polynomial regression of weight gain and specific growth rate revealed that the optimum dietary chitosan requirements in A. stellatus were 5.32 and 5.21 g chitosan.kg−1, respectively. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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31. Asymmetric Polarization in a Rough Multilayer: Towards the Discrimination of Enantiomer Pairs.
- Author
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Simone, Giuseppina
- Subjects
- *
ACOUSTIC vibrations , *ROUGH surfaces , *OPTICAL spectra , *MANUFACTURING processes , *PHOTON flux - Abstract
Chirality plays a significant part in many vital processes, and to further our level of understanding, there is a steadily growing interest in enhancing the yield of enantioselective processes. Here, a multilayer with etched grooves is activated in a Kretschmann geometry and consists of alternating platinum Pt, silica SiO2, and silicon Si, as well as a silver Ag layer. Due to the production process, the groove surface exhibits a micrometric roughness, characterized by a typical vibrational mode at ω = 96 MHz. The mode is attributed to a localized acoustic vibration and has been detected as a transmitted signal. The outcomes of the inquiry include plasmonic amplification of the transmitted signal and its wavevector-less nature; in addition, it is shown that the signal is depolarized in reference to the incident beam because of the rough surface. When the Kretschmann scheme is combined with the depolarization brought on by the roughness, a built-in asymmetry results in a higher optical flux of spectrum photons in the depolarized plane than the co-polarized plane, resulting in distinct, enantioselective, and solely polarization-dependent spectral contrast. In conclusion, enantioselectivity is demonstrated for the D,L-penicillamine. [ABSTRACT FROM AUTHOR]
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- 2024
- Full Text
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32. Tubenose goby Proterorhinus semipellucidus continues its spread in the Baltic Sea basin: first record from the temperate salmonid stream (Estonia).
- Author
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Taal, Imre, Svirgsden, Roland, Kesler, Martin, Saks, Lauri, Karvak, Jürgen, Vetemaa, Markus, and Truuverk, Andro
- Subjects
- *
BIOLOGICAL invasions , *BRACKISH waters , *TERRITORIAL waters , *INTRODUCED species , *GOBIIDAE - Abstract
The capture of the nonindigenous tubenose goby Proterorhinus semipellucidus in the Pada River (Baltic Sea basin) is reported. Previous records about the occurrence of this species in this region are restricted to the brackish coastal surfzone area. The finding implies that in the Baltic Sea region P. semipellucidus has started to invade from brackish coastal waters to freshwater tributaries of the Gulf of Finland. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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33. Skrjabinomermis pirnaimi sp. n. (Nematoda: Mermithidae) from Iran: A morphological and molecular phylogenetic study.
- Author
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Abootalebi, Faegheh, Niknam, Gholamreza, Vazifeh, Nasir, Camino, Nora B., and Shaaf Gorashi, Saideh
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BIOLOGICAL classification , *VULVA , *VAGINA , *RIBOSOMAL RNA , *CUTICLE - Abstract
Summary: A new species of the genus Skrjabinomermis , collected from two locations in north and northwest of Iran, is described and illustrated, including morphological data and D2-D3 rRNA LSU sequences. Skrjabinomermis pirnaimi sp. n. is characterised by its six cephalic papillae, two hypodermal pegs in the area of the cephalic papillae, adult's cuticle with very fine cross fibres, head rounded, mouth central, amphids cup-shaped, six hypodermal cords, vulva a transverse slit, located post-equatorially, cuticular protruding and vulval lips well developed, vagina pear- or barrel-shaped, with slightly bent lumen, tail similar in both sexes, bluntly rounded, spicules paired, medium sized, slightly curved, fused posteriorly for about 68-73% of their length, with pointed tip, male genital papillae arranged in three rows: the median ventral row having two pre- and two post-anal papillae, and the lateroventral rows with five papillae each. Molecular analyses using the D2-D3 expansion regions of the 28S rRNA gene sequences placed the genus Skrjabinomermis as a sister genus to Romanomermis with 93% Bayesian posterior probability based upon currently available data. [ABSTRACT FROM AUTHOR]
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- 2024
- Full Text
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34. A new species of Discostella guiyangensis sp. nov. (Bacillariophyta, Stephanodiscales) from Guiyang, China: morphology and phylogeny.
- Author
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Xiang, Yandan, Nan, Fangru, Liu, Xudong, Xie, Shulian, Kociolek, John Patrick, and Liu, Qi
- Subjects
- *
DIATOMS , *PHYLOGENY , *RECOMBINANT DNA , *ESTIMATION theory - Abstract
We describe a new species of Discostella from Guiyang based on light and scanning electron microscopic observations, as well as molecular analysis. This species is morphologically distinguished from other species by a relatively smooth and slightly recessed central area with marginal striae of unequal lengths forked near the margin. Marginal fultoportulae and a single rimoportula are situated between every two costae or on the costae. Both morphological characters and the concatenated data of rbcL and SSU rDNA indicate that Discostella guiyangensis is a unique and new species. According to divergence time estimation analysis, Discostella guiyangensis is the oldest species among the Discostella species sequenced currently. In addition, we complement molecular data of Discostella asterocostata and Discostella stelligera. [ABSTRACT FROM AUTHOR]
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- 2024
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35. Molecular analysis using SalvGlandDx improves risk of malignancy estimation and diagnosis of salivary gland cytopathology: An exploratory multicenter study.
- Author
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Freiberger, Sandra N., Ikenberg, Kristian, van Egmond, Demi, Claerhout, Sofie, van Wezel, Tom, Bempt, Isabelle Vanden, van Rossem, Jeroen N., Mueller, Simon A., Clement, Paul M, Poorten, Vincent Vander, Cohen, Danielle, Hauben, Esther, and Rupp, Niels J.
- Abstract
Background: Diagnosis of salivary gland neoplasms is challenging, especially on cytological specimens acquired by fine‐needle aspiration. The recently implemented standardized Milan system for reporting salivary gland cytopathology provides an estimated risk of malignancy (ROM); yet, for two of the categories, the diagnosis of the lesion remains unclear. However, a precise diagnosis is desirable for optimal patient management, including planning of surgery and imaging procedures. Methods: Cytological specimens (n = 106) were subjected to molecular analysis using the SalvGlandDx panel. The risk of malignancy was calculated for each detected alteration based on the diagnosis of the resection specimen. By taking into account the molecular alterations, their associated ROM, the clinical and cytological features, and the current literature, the Milan category was evaluated. Results: Of n = 63 technically valid cases, 76% revealed a molecular alteration. A total of 94% of these molecularly altered cases could be assigned to a different Milan category when additionally taking molecular results into account. In only 2% of the salivary gland neoplasms of uncertain malignant potential, in which a molecular alteration was detected, the classification remained salivary gland neoplasms of uncertain malignant potential. Conclusion: Molecular analysis of cytological specimens provides a benefit in classifying salivary gland neoplasms on fine‐needle aspiration. It can improve the ROM estimation and thus help to assign cases of formerly unknown malignant potential to clearly benign or malignant categories. Molecular analysis of cytological specimens provides a benefit in classifying salivary gland neoplasms on fine‐needle aspiration. It can improve the ROM estimation and thus help to assign cases of formerly unknown malignant potential to clearly benign or malignant categories. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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36. MOLECULAR CHARACTERIZATION OF THE SUGARCANE CULTIVAR GMP3 MUTANTS INDUCED THROUGH COLCHICINE USING PCR-RAPD MARKERS.
- Author
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MAHFUT, KENDARI, P., SUSIYANTI, E., AHYAR, A. N., and BANGSAWAN, R.
- Subjects
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SUGARCANE , *GENETIC distance , *GENETIC markers , *CLUSTER analysis (Statistics) , *GENETIC polymorphisms - Abstract
Plant breeding‘s rewarding polyploidy analysis can happen by observing molecular characteristics. Previously obtained 21 sugarcane mutants had used colchicine induction on the GMP3 cultivar at the PT Gunung Madu Plantations, Lampung, Indonesia. However, little information emerged related to the informative molecular markers and analysis of molecular characteristics in sugarcane mutants. The presented research complements previous studies regarding the characterization of superior sugarcane mutants based on agronomic and anatomical attributes. The said research ran through PCR-RAPD amplification using five primers. The DNA band pattern diversity analysis ensued using MVSP program version 3.2. The cluster analysis through UPGMA also estimated the genetic distance. Polymorphic band assessment employing the polymorphism information content (PIC) also helps determine the informative level of the used primers. The PCR-RAPD markers’ screening results showed that four informative primers (OPN-07, OPB-19, OPA-04, and OPA-07) have PIC values ranging from 0.30 to 0.39. The molecular characterization showed that 21 GMP3 mutants had 35-60 DNA bands with 28 polymorphic bands and a similarity index of 0.47-1.00. The promising results would help increase sugar production and improve quality by inducing mutation in the sugarcane cultivar GMP3. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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37. Lavender (Lavandula angustifolia L.) cultivated in a hydroponic system in Ethiopia was found infected with Meloidogyne javanica.
- Author
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Meressa, Beira Hailu and Heuer, Holger
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LAVENDERS , *JAVANESE root-knot nematode , *NADH dehydrogenase , *ROOT-knot nematodes , *POTTING soils , *RIBOSOMAL RNA , *HYDROPONICS - Abstract
Plants grown without soil are believed to be less affected by soilborne diseases. However, in a commercial greenhouse in Ethiopia's Rift valley, Lavender plants grown in hydroponic showed signs of severe stunting and galled roots. To identify the cause of the problem, root samples were taken. From these samples, single egg masses were obtained and used as inoculum for tomato cv. Moneymaker seedlings. The resulting seedlings were grown to produce a pure culture. DNA was extracted from second-stage juveniles (J2) from sixteen isolates derived from pure cultures and amplified the 28S rRNA and NADH dehydrogenase subunit 5 (Nad5) region of the mtDNA. The 28S rRNA and Nad5 were sequenced for two and five randomly selected isolates. A BLAST search of 28S rRNA sequences at NCBI showed a 98.34% sequence homology with known sequences of Meloidogyne javanica isolates. Moreover, Nad5 gene analysis, female perennial pattern, and the phylogenetic trees further confirmed the correct identification of this species. This is the first report of a nematode infecting plants growing in a hydroponic greenhouse in Ethiopia. Therefore, isolating any potential contaminants of the potting media for future lavender production are important. [ABSTRACT FROM AUTHOR]
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- 2024
- Full Text
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38. Esophageal and gastric pythiosis in a dog.
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Sousa da Silva, Emanoelly Machado, Fernandes Martins, Kamila Peruchi, Barbosa Pereira, Asheley Henrique, Hentz Gris, Anderson, Harumi Maruyama, Fernanda, Nakazato, Luciano, Moleta Colodel, Edson, Schneider de Oliveira, Luiz Gustavo, and Marques Boabaid, Fabiana
- Subjects
- *
GASTROINTESTINAL system , *ESOPHAGEAL fistula , *DOGS , *DOG diseases , *GASTROINTESTINAL diseases , *GRANULATION tissue , *AUTOPSY - Abstract
Pythiosis is the disease caused by aquatic oomycetes of the genus Pythium. In dogs the typical course of the disease involves the gastrointestinal tract, characterized by transmural thickening of the stomach or intestines. However, infection by Pythium spp. has only rarely been recognized as a cause of esophagitis in dogs. Thus, the present reports a case of esophageal and gastric pythiosis in an eight-month-old female pit bull dog. The dog was attended at the hospital after two months presenting regurgitation and dyspnea. It was reported that the dog lived in an urban area and had no previous sanitary issues. At clinical examination it was noted that the dog presented crackling sounds at pulmonary auscultation. A support therapy accompanied by antibiotics has been employed; however, 22 days after hospitalization the clinical condition worsened, and the dog died. At necropsy, the wall of the distal segment of the esophagus and the cardia and part of the fundus of the stomach were expanded by a focal extensive irregular intramural annular mass. Additionally, there was a transmural esophageal fistula. At histology, the walls of the esophagus and stomach were extensively expanded by multifocal extensive areas of necrosis, associated with a pyogranulomatous infiltrate and abundant granulation tissue containing multiple negative images of hyphae that were highlighted by silver impregnation (Grocott). Furthermore, immunohistochemistry and PCR for P. insidiosum were both positive in samples of paraffin-embedded esophageal tissue. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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39. Taxonomy of the two nominal species of the deep-sea clawed lobsters Nephropsis serrata Macpherson, 1993 and N. hamadai Watabe & Ikeda, 1994 (Decapoda: Astacidea: Nephropidae).
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Chan, Tin-Yam, Wakabayashi, Kaori, Chen, Chien-Lin, Kato, Mikio, and Chang, Su-Ching
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DECAPODA ,TAXONOMY ,SPECIES ,SYNONYMS ,CRUSTACEA ,DEEP-sea fishes ,LOBSTERS - Abstract
The deep-sea clawed lobster Nephropsis hamadai Watabe & Ikeda, 1994 , described from Japan, has been suspected to be a synonym of Nephropsis serrata Macpherson, 1993 , recorded from Australia (type locality) to Taiwan. The availability of recently collected material from Japan referred to N. hamadai allowed detailed morphological and molecular comparisons of topotypic specimens of N. serrata and N. hamadai. Re-examination of the holotype of N. serrata revealed that the major difference proposed for separating N. hamadai from N. serrata was based on an error in the original description of the latter species. As there are very low genetic divergences and no morphological differences between the Australian and Japanese materials referable to N. serrata and N. hamadai , these two names are now confirmed to be synonyms. [ABSTRACT FROM AUTHOR]
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- 2024
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40. Optimization of DNA Extraction and RAPD Protocols for Dry Capsicum Seeds
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Enrico Diniz Rodrigues Batista, Mônica Rosa Bertão, Darío Abel Palmieri, Camila Baptistão Zaniboni, and Milena Cristina Moraes
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DNA isolation ,Molecular analysis ,PCR ,Primer ,Pepper ,Biotechnology ,TP248.13-248.65 - Abstract
Abstract Genetic analyses through molecular markers always depend on efficient protocols for DNA extraction and standardized PCR conditions. Random Amplified Polymorphic DNA (RAPD) is an inexpensive protocol that can provide information about the genetic diversity among Capsicum accessions within a germplasm bank, but it is highly sensitive to reaction conditions and manipulation. This work presents an optimized protocol for DNA isolation from dry Capsicum seeds, and a standardization of five conditions for PCR using RAPD primers. The RAPD protocol was optimized for the following parameters: 50 ng of DNA template per mix, 2.5 mM MgCl2, 200 µM dNTP's, 25 ng of primer per mix, and 45 thermal cycles, resulting in reproducible and clear amplified fragments. Good quality products were presented in the extractions and amplifications carried out; therefore, the optimized protocols are sufficient to be used in future work with RAPD.
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- 2024
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41. Apoptosis and platelet biogenesis: A new piece of information on a debated topic.
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Zaninetti, Carlo and Greinacher, Andreas
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ORGANELLE formation , *BLOOD platelets , *CYTOCHROME c , *GENETIC variation , *GENETIC mutation - Abstract
Thrombocytopenia 4 (THC4) is an extremely rare form of inherited thrombocytopenia caused by mutations in the gene encoding cytochrome c (CYCS). The mechanism leading to reduced blood platelets remains unclear, although an unrestrained megakaryocyte apoptosis as a consequence of CYCS alterations has been proposed. The report of a TCH4 family with a novel CYCS variant unravels clues on the pathogenesis of this disorder and spotlights back on the still‐discussed role of apoptosis in human platelet and megakaryocyte physiology.Commentary on: Štika et al. A novel thrombocytopenia‐4‐causing CYCS gene variant decreases caspase activity: Three‐generation study. Br J Haematol 2024 (Online ahead of print). doi: 10.1111/bjh.19694. [ABSTRACT FROM AUTHOR]
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- 2024
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42. Morpho-molecular delineation of rice germplasm for leaf blast resistance under intermediate hill ecology of UT of J&K India
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Saini, Rahul, Kumar, Bupesh, Sharma, Manmohan, Sharma, Vikas, Singh, V. B., Sudan, R. S., and Gill, Komaljeet
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- 2024
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43. Tectal glioma: clinical, radiological, and pathological features, and the importance of molecular analysis
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Imoto, Ryoji, Otani, Yoshihiro, Fujii, Kentaro, Ishida, Joji, Hirano, Shuichiro, Kemmotsu, Naoya, Suruga, Yasuki, Mizuta, Ryo, Kegoya, Yasuhito, Inoue, Yohei, Umeda, Tsuyoshi, Hokama, Madoka, Washio, Kana, Yanai, Hiroyuki, Tanaka, Shota, Satomi, Kaishi, Ichimura, Koichi, and Date, Isao
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- 2024
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44. Microcotyle Tazeroutii n. sp. (Monogenea: Microcotylidae) from the Gills of the Boarfish Capros aper Linnaeus, 1758 (Teleostei: Caproidae) off the Algerian Coast, Western Mediterranean
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Rebah, Amira Meriem, Gey, Delphine, and Ayadi, Zouhour El Mouna
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- 2024
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45. Population genetic structure and range limits of Prostanthera cineolifera (Lamiaceae), a vulnerable shrub with a patchy distribution
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Palsson, Ruth L., Telford, Ian R. H., Bruhl, Jeremy J., and Andrew, Rose L.
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- 2024
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46. Molecular and SEM studies on Thaparocleidus vistulensis (Siwak, 1932) (Monopisthocotyla, Ancylodiscoididae)
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Wan Muhammad Hazim Wan Sajiri, Csaba Székely, Kálmán Molnár, Sebastian Kjeldgaard-Nintemann, Per Walter Kania, Kurt Buchmann, and Boglárka Sellyei
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Thaparocleidus vistulensis ,Silurus glanis ,Sclerotized structure ,Male copulatory organ ,Molecular analysis ,rDNA ,Medicine ,Science - Abstract
Abstract Presenting new molecular and scanning electron microscope (SEM) features, this study gives additional data to the better knowledge of Thaparocleidus vistulensis (Siwak, 1932) (Monopisthocotyla, Ancylodiscoididae), a parasite of the European catfish Silurus glanis Linnaeus, 1758 (Siluriformes, Siluridae) cultured in a commercial fish farm in Hungary. In addition, notes on the early development of sclerotized anchors are also provided. The main morphological difference of T. vistulensis compared to other congeneric species is associated with the male copulatory organ, which exhibits 5–7 loops in the middle of the penis length and a long open V-shaped sclerotized accessory piece, dividing terminally into two parts, securing the terminal part of the penis tube. The present study provides for the first time molecular characterization data based on the 2694 bp long nucleotide sequence of rDNA (ITS1, 5.8S, ITS2, and flanked with partial 18S and partial 28S) submitted in GenBank with the accession number OR916383. A phylogenetic tree based on ITS1 sequences supports a well-defined clade including T. vistulensis, forming a sister group with T. siluri, a species-specific monopisthocotylan parasite to S. glanis. The morphological characterization of T. vistulensis, especially for the male copulatory organ, together with the molecular data in the present study, extends knowledge about this monopisthocotylan species and provides new information for future phylogeny studies.
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- 2024
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47. Correlation of sperm motility, acrosome integrity, protamine deficiency, and DNA fragmentation in proven and unproven Friesian Holstein bulls
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Ristika Handarini, Abdullah Baharun, Annisa Rahmi, Deden Sudrajat, Anggraeni Anggraeni, Nurcholis Nurcholis, Hikmayani Iskandar, Tulus Maulana, Ekayanti Mulyawati Kaiin, Saiful Anwar, and Syahruddin Said
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dairy bull ,frozen semen ,molecular analysis ,sperm quality ,Veterinary medicine ,SF600-1100 - Abstract
Objective: The evaluation of frozen semen quality is an essential aspect in determining male fertility for artificial insemination programs. This study aims to evaluate the characteristics of Friesian Holstein (FH) bull-frozen semen in different classes (proven and unproven) based on protein profiling and molecular evaluation. Materials and Methods: This study used frozen semen straws from FH bulls selected according to criteria for proven (6 individuals) and unproven (6 individuals) bulls produced by the Singosari AI Center (AIC). Sperm motility parameters were assessed using Computer Assisted Semen Analysis (CASA Supervision®, Germany), while sperm viability and abnormality were evaluated through eosin-nigrosin staining under a microscope at 400´ magnifications. The integrity of the sperm plasma membrane was determined using the hypoosmotic swelling test, and acrosome integrity was analyzed using the fluorescein isothiocyanate PNA-propidium iodide staining method. Protamine deficiency was quantified using Chromomycin A3 fluorescence staining, while DNA fragmentation was assessed using the acridine orange technique. Results: The findings demonstrated that there were no statistically significant differences (p > 0.05) in the assessed parameters of frozen semen quality between FH-proven and unproven bulls. Furthermore, in FH-proven bulls, a negative correlation was observed between protamine deficiency and acrosome integrity (r = −0.528) and between protamine deficiency and sperm DNA fragmentation (r = −0.467). The parameters of protamine deficiency in unproven bulls exhibited a positive correlation with sperm progressive motility. Conclusion: The frozen semen quality of FH bulls in different classes (proven and unproven) was found to be equally good. Molecular-based analysis allows for a more accurate determination of semen quality. These findings are significant for bull breeding stations when comprehensively evaluating semen quality. [J Adv Vet Anim Res 2024; 11(3.000): 796-802]
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- 2024
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48. Kevinilla, a new velvet ant genus in the Sphaeropthalminae (Hymenoptera: Mutillidae)
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Pedro R. BARTHOLOMAY, Roberto A. CAMBRA, Carlos W. RAMOS, Estibali WILKIE, and Yostin J. AÑINO
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taxonomy ,pseudomethocini ,molecular analysis ,seasonal flight activity ,neotropical ,panama ,Zoology ,QL1-991 - Abstract
The new genus Kevinilla Bartholomay & Cambra includes the following four Neotropical species: Kevinilla ludovica (Cameron, 1895) comb. n. (the type species), K. bicarinata (Cambra & Quintero, 2008) comb. n., K. bimaculata (Cambra & Quintero, 2008) comb. n., and K. hansoni (Cambra & Quintero, 2008) comb. n., all transferred from Pseudomethoca. A neighbour joining tree clustered IST1 sequences of Kevinilla in a subclade of the main clade, which includes species of Pseudomethoca and Dasymutilla. Therefore, here Kevinilla is considered to be a member of the subfamily Sphaeropthalminae, tribe Pseudomethocini. A key for both sexes of the known species of Kevinilla is given, as well as an account of seasonal flight activity of males recorded over six years using Malaise traps on Barro Colorado Island, Panama.
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- 2024
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49. Tissue Elasticity as a Diagnostic Marker of Molecular Mutations in Morphologically Heterogeneous Colorectal Cancer.
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Plekhanov, Anton A., Kozlov, Dmitry S., Shepeleva, Anastasia A., Kiseleva, Elena B., Shimolina, Liubov E., Druzhkova, Irina N., Plekhanova, Maria A., Karabut, Maria M., Gubarkova, Ekaterina V., Gavrina, Alena I., Krylov, Dmitry P., Sovetsky, Alexander A., Gamayunov, Sergey V., Kuznetsova, Daria S., Zaitsev, Vladimir Y., Sirotkina, Marina A., and Gladkova, Natalia D.
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COLORECTAL cancer , *GENETIC testing , *COHERENCE (Optics) , *ELASTICITY , *RAS oncogenes , *PLASMA diagnostics - Abstract
The presence of molecular mutations in colorectal cancer (CRC) is a decisive factor in selecting the most effective first-line therapy. However, molecular analysis is routinely performed only in a limited number of patients with remote metastases. We propose to use tissue stiffness as a marker of the presence of molecular mutations in CRC samples. For this purpose, we applied compression optical coherence elastography (C-OCE) to calculate stiffness values in regions corresponding to specific CRC morphological patterns (n = 54). In parallel to estimating stiffness, molecular analysis from the same zones was performed to establish their relationships. As a result, a high correlation between the presence of KRAS/NRAS/BRAF driver mutations and high stiffness values was revealed regardless of CRC morphological pattern type. Further, we proposed threshold stiffness values for label-free targeted detection of molecular alterations in CRC tissues: for KRAS, NRAS, or BRAF driver mutation—above 803 kPa (sensitivity—91%; specificity—80%; diagnostic accuracy—85%), and only for KRAS driver mutation—above 850 kPa (sensitivity—90%; specificity—88%; diagnostic accuracy—89%). To conclude, C-OCE estimation of tissue stiffness can be used as a clinical diagnostic tool for preliminary screening of genetic burden in CRC tissues. [ABSTRACT FROM AUTHOR]
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- 2024
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50. Taxonomic identification and life cycle comparison of two populations of the monostromatic green algae Monostroma nitidum.
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Liao, Jiawei, Wang, Sipan, Lin, Kun, Huang, Yongjian, Chen, Xinyi, Xin, Rong, Guo, Youyou, and Xie, Enyi
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GREEN algae , *GENETIC distance , *LIFE cycles (Biology) , *SEQUENCE analysis , *PHOTOTAXIS , *RESEARCH personnel - Abstract
Monostroma nitidum, a monostromatic green algae (MGA) with high economic value, is distributed worldwide. Life cycle often serves as a fundamental criterion for taxonomic classification. Most researchers consider the life cycle of M. nitidum to involve dimorphic alternation of generations, although the possibility of a monomorphic asexual life cycle remains unclear. In this study, tufA and 18S rDNA sequences were employed as molecular markers, complemented by morphological analysis, to classify and identify MGA in two distinct habitats: Hailing Island reefs (YJ) and Naozhou Island reefs (ZJ). The results of tufA and 18S rDNA sequence analysis revealed that all samples from YJ and ZJ clustered to the same branch (M. nitidum clade) with high bootstrap support and genetic distances of less than 0.000 and 0.005, respectively. However, morphological observations indicated significant differences in the external morphology of the YJ and ZJ samples, although both initially exhibited a filament‐blade form during early development. The life cycle of the ZJ samples exhibited typical dimorphic alternation of generations, whereas the YJ samples only produced biflagellate asexual gametes with negative phototaxis. Gametes of the YJ samples directly developed into new gametophytes without undergoing the sporophyte stage. Consequently, the YJ and ZJ samples were classified as monomorphic asexual and dimorphic sexual M. nitidum, respectively. These findings provide evidence supporting the monomorphic asexual life cycle of M. nitidum for the classification of MGA. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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