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In this study, we propose a mathematical model based on parametric surfaces for the shell morphology of the phylum Mollusca. Since David Raup's pioneering works, many mathematical models have been proposed for different contexts to describe general shell morphology; however, there has been a gap in the practicality of models that allow the estimation of their parameter values in real specimens. Our model collects ideas from previous pioneering studies; it rests on the equation of the logarithmic spiral, uses a fixed coordinate system (coiling axis), and defines the position of the generating curve with a local moving system using the Frenet frame. However, it improves upon previous models by applying apex formation, rotations, and substantially different parameter definitions. Furthermore, the most conspicuous improvement is the development of a simple and standardized methodology to obtain the six theoretical parameters from shell images from different mollusc classes and to generate useful theoretical morphospaces. The model was applied to reproduce the shape of real mollusc-shell specimens from Gasteropoda, Cephaloda and Bivalvia, which represent important classes in geological time. We propose a specific methodology to obtain the parameters in four morphological groups: helicoidal, planispiral, conic, and valve-like shells, thereby demonstrating that the model offers an adequate representation of real shells. Finally, possible improvements to the model are discussed along with further work. Based on the above considerations, the capacity of the model to allow the construction of theoretical morphospaces, the methodology to estimate parameters and from the comparison between several existing models for shells, we believe that our model can contribute to future research on the development, diversity and evolutionary processes that generated the diversity in mollusc shells. [ABSTRACT FROM AUTHOR]

Abstract Background Although the apple snail Pila globosa is used as indicator species for human consumption locally and as fish feed, research on it in general is very scanty. It is used in food industry, in aquaculture as fish bait and used as food in many regions of India and many other countries, but research on it has been started in the 1970s. Only 40 articles are available on this organism in PubMed indicating an urgent need of basic research on it especially work on its spatiotemporal morphometry Therefore, sampling of P. globosa was done from different parts of India in different seasons (summer, winter and rainy), and different morphometric studies were performed on this organism to draw baseline information. Analysis was conducted to study morphometry, the relationship between shell length and the weight and relative condition factor of Indian apple snail Pila globosa collected from five zones (east, west, north, south and centre) of India during 2018–2019 year. Results The shell length (SL) (46.5 ± 13.33), shell width (SW) (40.22±11.5 mm), spire length (SPL) (2.99±0.15 mm), base length (BL) (12.53±2.94 mm), aperture length (AL) (21.95±4.36 mm), aperture width (AW) (2.74±0.47 mm) and shell weight (WT) (31.08±13.76 g) were observed to be varied among the individual sampled across India. Different relationships for SL/SW (Log SW=0.9889 Log SL + 0.9444), SL/SPL (Log SPL = 0.1452 Log SL+0.3815), SL/BL (Log BL=0.7789 Log SL+0.5814), SL/AL (Log AL= 0.6518 Log SL+0.9111) and SL/AW (Log AW=0.4475 Log SL+0.1422) were observed by considering shell length as basic index. The relationship between shell length and shell weight was found to be Log WT=2.0263 Log SL+0.1098. The relative condition factor revealed uninterrupted and good environmental condition observed for apple snails. A negative allometric growth pattern was observed from the length–weight relationship. Conclusion The environments of apple snail in India are not contaminated, and the results can be used as baseline data in aquaculture for model analysis and can be used as a reference for drawing relationship among different morphometric indices of P. globosa in India, as there is no such information available on it. The data can also be used for mass scale production of P. globosa for consumption by human and use in aquatic industries as fish feed.

In this study, we propose a mathematical model based on parametric surfaces for the shell morphology of the phylum Mollusca. Since David Raup’s pioneering works, many mathematical models have been proposed for different contexts to describe general shell morphology; however, there has been a gap in the practicality of models that allow the estimation of their parameter values in real specimens. Our model collects ideas from previous pioneering studies; it rests on the equation of the logarithmic spiral, uses a fixed coordinate system (coiling axis), and defines the position of the generating curve with a local moving system using the Frenet frame. However, it improves upon previous models by applying apex formation, rotations, and substantially different parameter definitions. Furthermore, the most conspicuous improvement is the development of a simple and standardized methodology to obtain the six theoretical parameters from shell images from different mollusc classes and to generate useful theoretical morphospaces. The model was applied to reproduce the shape of real mollusc-shell specimens from Gasteropoda, Cephaloda and Bivalvia, which represent important classes in geological time. We propose a specific methodology to obtain the parameters in four morphological groups: helicoidal, planispiral, conic, and valve-like shells, thereby demonstrating that the model offers an adequate representation of real shells. Finally, possible improvements to the model are discussed along with further work. Based on the above considerations, the capacity of the model to allow the construction of theoretical morphospaces, the methodology to estimate parameters and from the comparison between several existing models for shells, we believe that our model can contribute to future research on the development, diversity and evolutionary processes that generated the diversity in mollusc shells.

Background: Although the apple snail Pila globosa is used as indicator species for human consumption locally and as fish feed, research on it in general is very scanty. It is used in food industry, in aquaculture as fish bait and used as food in many regions of India and many other countries, but research on it has been started in the 1970s. Only 40 articles are available on this organism in PubMed indicating an urgent need of basic research on it especially work on its spatiotemporal morphometry Therefore, sampling of P. globosa was done from different parts of India in different seasons (summer, winter and rainy), and different morphometric studies were performed on this organism to draw baseline information. Analysis was conducted to study morphometry, the relationship between shell length and the weight and relative condition factor of Indian apple snail Pila globosa collected from five zones (east, west, north, south and centre) of India during 2018–2019 year. Results: The shell length (SL) (46.5 ± 13.33), shell width (SW) (40.22±11.5 mm), spire length (SPL) (2.99±0.15 mm), base length (BL) (12.53±2.94 mm), aperture length (AL) (21.95±4.36 mm), aperture width (AW) (2.74±0.47 mm) and shell weight (WT) (31.08±13.76 g) were observed to be varied among the individual sampled across India. Different relationships for SL/SW (Log SW=0.9889 Log SL + 0.9444), SL/SPL (Log SPL = 0.1452 Log SL+0.3815), SL/BL (Log BL=0.7789 Log SL+0.5814), SL/AL (Log AL= 0.6518 Log SL+0.9111) and SL/AW (Log AW=0.4475 Log SL+0.1422) were observed by considering shell length as basic index. The relationship between shell length and shell weight was found to be Log WT=2.0263 Log SL+0.1098. The relative condition factor revealed uninterrupted and good environmental condition observed for apple snails. A negative allometric growth pattern was observed from the length–weight relationship. Conclusion: The environments of apple snail in India are not contaminated, and the results can be used as baseline data in aquaculture for model analysis and can be used as a reference for drawing relationship among different morphometric indices of P. globosa in India, as there is no such information available on it. The data can also be used for mass scale production of P. globosa for consumption by human and use in aquatic industries as fish feed. [ABSTRACT FROM AUTHOR]

Mollusc shells are an abundant resource that have been long used to predict the structures of ancient ecological communities, examine evolutionary processes, reconstruct paleoenvironmental conditions, track and predict responses to climatic change, and explore the movement of hominids across the globe. Despite the ubiquity of mollusc shell in many environments, it remains relatively unexplored as a substrate for molecular genetic analysis. Here we undertook a series of experiments using the New Zealand endemic greenshell mussel, Perna canaliculus, to explore the utility of fresh, aged, beach-cast and cooked mollusc shell for molecular genetic analyses. We find that reasonable quantities of DNA (0.002–21.48 ng/mg shell) can be derived from aged, beach-cast and cooked mussel shell and that this can routinely provide enough material to undertake PCR analyses of mitochondrial and nuclear gene fragments. Mitochondrial PCR amplification had an average success rate of 96.5% from shell tissue extracted thirteen months after the animal’s death. A success rate of 93.75% was obtained for cooked shells. Amplification of nuclear DNA (chitin synthase gene) was less successful (80% success from fresh shells, decreasing to 10% with time, and 75% from cooked shells). Our results demonstrate the promise of mollusc shell as a substrate for genetic analyses targeting both mitochondrial and nuclear genes.

Mollusc shells are an abundant resource that have been long used to predict the structures of ancient ecological communities, examine evolutionary processes, reconstruct paleoenvironmental conditions, track and predict responses to climatic change, and explore the movement of hominids across the globe. Despite the ubiquity of mollusc shell in many environments, it remains relatively unexplored as a substrate for molecular genetic analysis. Here we undertook a series of experiments using the New Zealand endemic greenshell mussel, Perna canaliculus, to explore the utility of fresh, aged, beach-cast and cooked mollusc shell for molecular genetic analyses. We find that reasonable quantities of DNA (0.002 21.48 ng/mg shell) can be derived from aged, beach-cast and cooked mussel shell and that this can routinely provide enough material to undertake PCR analyses of mitochondrial and nuclear gene fragments. Mitochondrial PCR amplification had an average success rate of 96.5% from shell tissue extracted thirteen months after the animal's death. A success rate of 93.75% was obtained for cooked shells. Amplification of nuclear DNA (chitin synthase gene) was less successful (80% success from fresh shells, decreasing to 10% with time, and 75% from cooked shells). Our results demonstrate the promise of mollusc shell as a substrate for genetic analyses targeting both mitochondrial and nuclear genes. [ABSTRACT FROM AUTHOR]

Mollusc aquaculture is advocated as a highly sustainable food source and may play an important role in future food security globally. With production increasing worldwide, it is timely to appraise all aspects of aquaculture when considering its expanding role as a food source. In this regard, one regularly overlooked aspect of mollusc aquaculture is waste generation: namely the production of calcareous shells. Shells from the aquaculture industry are widely regarded as a nuisance waste product, yet at the same time, calcium carbonate is mined in the form of limestone and viewed as a valuable commodity. In a time of increased awareness of the need for a circular economy, the aquaculture and seafood industry should consider shells as a valuable biomaterial that can be reused for both environmental and economic benefit. This review discusses the current waste shell issue and identifies large‐scale shell applications that are already in place. Further, it highlights proposed applications that have the potential to be scaled up to address the problem of waste shell accumulations and reduce our reliance on environmentally damaging incineration and landfill disposal. Of the plethora of shell valorisation techniques proposed in the scientific literature, this review will focus only on those that can incorporate large‐scale shell utilisation, and do not require high‐energy processing, and are thus; simple, sustainable and potentially economically viable. Further, this review questions whether, in many cases, shells can provide more inherent value being returned to the marine environment rather than being used in land‐based applications. [ABSTRACT FROM AUTHOR]

A three-dimensional porous carbon skeleton with hexagonal channels was synthesized by using mollusc shell as the carbon source. The obtained mollusc shell based macroporous carbon material (MSBPC) has high conductivity and is very favorable for use in the electrolyte penetration and electron transfer, making it an excellent carbon substrate for composite electrode materials. After incorporation of MnO 2 nanosheets, the MSBPC/MnO 2 was synthesized and applied in supercapacitors, which exhibited a high specific capacitance of 386 F g −1 at 1 A g −1 with an excellent rate performance (278.7 F g −1 at 10 A g −1 ), and outstanding cycling stability, with a capacitance retention of 83% after 5000 cycles at 20 A g −1 . The good electrochemical performance indicates the high potential of the prepared MSBPC/MnO 2 as a novel supercapacitor electrode material with a high power density, excellent long life cycling, and environmental friendliness. [ABSTRACT FROM AUTHOR]

Mollusc shells, beyond the treasure of information inherently conveyed through their morphology and chemical composition also have the capacity to preserve DNA sequences over the long term in their inner structure. This has been clearly demonstrated for the first time in the study published in this issue of Molecular Ecology Resources by Der Sarkissian et al. (). With a methodology specifically dedicated to ancient DNA and solid matrices, the authors were able to successfully extract and amplify DNA from marine shells spanning the last 7,000 years. Furthermore, using metagenomic analyses, they could identify important factors affecting DNA recovery. Using reference genomes and sequences in a targeted approach to assign high-throughput sequencing reads, the authors revealed both the presence of endogenous mollusc DNA and a potent pathogen of Manilla clam. Collectively, the results presented in this study open extremely promising research avenues, from palaeogenomics and evolutionary biology to ecological genomics at population and community levels, as well as the opportunity to fine-tune diagnostic tools for conservation and aquaculture purposes. Last but not least, this study also offers exciting perspectives in epigenomics and the evolution of regulatory processes in the context of adaptation to global change. It can be easily expected that the approach developed by Der Sarkissian et al. () will be pursued and extensively investigated in the near future by the scientific community interested in these issues. [ABSTRACT FROM AUTHOR]

We here present the nucleation and growth of calcium carbonate under the influence of synthetic peptides on topographically patterned poly(dimethylsiloxane) (PDMS) substrates, which have a controlled density of defects between the wrinkles. Experiments with two lysine-rich peptides derived from the extracellular conserved domain E22 of the mollusc chitin synthase Ar-CS1, AKKKKKAS (AS8) and EEKKKKKES (ES9) on these substrates showed their influence on the calcium carbonate morphology. A transition from polycrystalline composites to single crystalline phases was achieved with the peptide AS8 by changing the pH of the buffer solution. We analyzed three different pH values as previous experiments showed that E22 interacts with aragonite biominerals more strongly at pH 7.75 than at pH 9.0. At any given pH, crystals appeared in characteristic morphologies only on wrinkled substrates, and did not occur on the flat, wrinkle-free PDMS substrate. These results suggest that these wrinkled substrates could be useful for controlling the morphologies of other mineral/peptide and mineral/protein composites. In nature, these templates are formed enzymatically by glycosyltransferases containing pH-sensitive epitopes, similar to the peptides investigated here. Our in vitro test systems may be useful to gain understanding of the formation of distinct 3D morphologies in mollusc shells in response to local pH shifts during the mineralization of organic templates.

Raised atmospheric emissions of carbon dioxide (CO 2 ) result in an increased ocean p CO 2 level and decreased carbonate saturation state. Ocean acidification potentially represents a major threat to calcifying organisms, specifically mollusks. The present study focuses on the impact of elevated p CO 2 on shell microstructural and mechanical properties of the bivalve Cerastoderma edule. The mollusks were collected from the Baltic Sea and kept in flow-through systems at six different p CO 2 levels from 900 μatm (control) to 24,400 μatm. Extreme p CO 2 levels were used to determine the effects of potential leaks from the carbon capture and sequestration sites where CO 2 is stored in sub-seabed geological formations. Two approaches were combined to determine the effects of the acidified conditions: (1) Shell microstructures and dissolution damage were analyzed using scanning electron microscopy (SEM) and (2) shell hardness was tested using nanoindentation. Microstructures of specimens reared at different p CO 2 levels do not show significant changes in their size and shape. Likewise, the increase of p CO 2 does not affect shell hardness. However, dissolution of ontogenetically younger portions of the shell becomes more severe with the increase of p CO 2 . Irrespective of p CO 2 , strong negative correlations exist between microstructure size and shell mechanics. An additional sample from the North Sea revealed the same microstructural-mechanical interdependency as the shells from the Baltic Sea. Our findings suggest that the skeletal structure of C. edule is not intensely influenced by p CO 2 variations. Furthermore, our study indicates that naturally occurring shell mechanical property depends on the shell architecture at μm-scale. [ABSTRACT FROM AUTHOR]

The adductor muscle scar (AMS) is the fixation point of adductor muscle to the shell. It is an important organicinorganic interface and stress distribution area. Despite recent advances, our understanding of the structure and composition of the AMS remain limited. Here, we report study on the AMS of three bivalves: Mytilus coruscus, Chlamys farreri and Ruditapes philippinarum. Results showed that there were significant differences among their AMS structures. Both M. coruscus and C. farreri were found to have a columnar layer above the nacreous platelet shell structure at the AMS and this layer was more organized in M. coruscus. There was no distinguishable twolayer structure in R. philippinarum. Atomic force microscopy (AFM) and Fourier transform infrared spectroscopy (FT-IR) results showed that the AMS was much smoother than the nacreous inner shell in all the three species and the AMS had minor different compositions from the nacreous shell layer. SDS-PAGE (sodium dodecyl-sulfate polyacrylamide gel electophoresis) study of the proteins isolated from the interface indicated that there was a 70 kDa protein which seemed to be specifically located to the highly organized columnar AMS structure in Mytilus coruscus. Further analysis of this protein showed it contained high level of Asx (Asp+Asn), Glx (Glu+Gln) and Gly. The special structure and composition of the AMS might play important roles in the stability, adhesion and function at this stress distribution site. [ABSTRACT FROM AUTHOR]

Climate change and ocean acidification are likely to have a profound effect on marine molluscs, which are of great ecological and economic importance. One process particularly sensitive to climate change is the formation of biominerals in mollusc shells. Fundamental research is broadening our understanding of the biomineralization process, as well as providing more informed predictions on the effects of climate change on marine molluscs. Such studies are important in their own right, but their value also extends to applied sciences. Biominerals, organic/inorganic hybrid materials with many remarkable physical and chemical properties, have been studied for decades, and the possibilities for future improved use of such materials for society are widely recognised. This article highlights the potential use of our understanding of the shell biomineralization process in novel bio-inspired and biomimetic applications. It also highlights the potential for the valorisation of shells produced as a by-product of the aquaculture industry. Studying shells and the formation of biominerals will inspire novel functional hybrid materials. It may also provide sustainable, ecologically- and economically-viable solutions to some of the problems created by current human resource exploitation. [ABSTRACT FROM AUTHOR]

The nuclear energy industry produces radioactive waste at various stages of the fuel cycle. In the United Kingdom, spent fuel is reprocessed at the Sellafield facility in Cumbria on the North West coast of England. Waste generated at the site comprises a wide range of radionuclides including radiocarbon ( 14 C) which is disposed of in various forms including highly soluble inorganic carbon within the low level liquid radioactive effluent, via pipelines into the Irish Sea. This 14 C is rapidly incorporated into the dissolved inorganic carbon (DIC) reservoir and marine calcifying organisms, e.g. molluscs, readily utilise DIC for shell formation. This study investigated a number of sites located in Irish Sea and West of Scotland intertidal zones. Results indicate 14 C enrichment above ambient background levels in shell material at least as far as Port Appin, 265 km north of Sellafield. Of the commonly found species (blue mussel ( Mytilus edulis ), common cockle ( Cerastoderma edule ) and common periwinkle ( Littorina littorea )), mussels were found to be the most highly enriched in 14 C due to the surface environment they inhabit and their feeding behaviour. Whole mussel shell activities appear to have been decreasing in response to reduced discharge activities since the early 2000s but in contrast, there is evidence of continuing enrichment of the carbonate sediment component due to in-situ shell erosion, as well as indications of particle transport of fine 14 C-enriched material close to Sellafield. [ABSTRACT FROM AUTHOR]

Electron spin resonance (ESR) spectroscopy was used to determine the geological formation age of fossil mollusc shells taken from marine terrace deposits (İkizlerçeşme-Çanakkale) in northwestern part of Turkey. This work reports the first results obtained by the ESR technique on shells collected from this region. In the ESR spectra of the natural and γ-irradiated shell samples, two different signals attributed to orthorombic ( g xx =2.0030, g zz =2.0015, g yy =1.9980) and isotropic ( g =2.0006) CO 2 − ion radicals were overlaped (Signal C). Annealing and kinetic experiments suggest the possibility of using the ESR signal at g =2.0015 (C signal) for the estimation of accumulated geological doses. The ESR signal growth curve on additional gamma irradiation has been best fitted by a combination of two single exponential saturation functions. This may support the existence of at least two components of the g =2.0015 ESR dating signal. Based on this model, the accumulated dose of the samples was determined as 110±11 Gy. Also the isothermal decay curves of the ESR dating signal could be best described by the combination of two first order decay functions. Activation energy and meanlifetime values at 15 °C of the two components were calculated as E 1 =1.4±0.1 eV, E 2 =1.1±0.1 eV, τ 1 =7.2×10 6 years and τ 2 =3.3×10 3 years, respectively. Uranium content of the studied shells was found to be high according to their chemical analysis. This may point out that the marine shell has received uranium from outside particularly in carbonate sediment. Therefore, the ESR age of the samples was also calculated using Early Uptake (EU), Linear Uptake (LU) and Combined Uptake (CU) models and results were discussed. [ABSTRACT FROM AUTHOR]

The wide diversity of biogenic minerals that is found in nature, each with its own morphology, mechanical properties and composition, is remarkable. In order to produce minerals that are optimally adapted for their function, biomineralisation usually occurs under strict cellular control. This control is exerted by specialised proteins and polysaccharides that assemble into a 3-dimensional organic matrix framework, forming a microenvironment where mineral deposition takes place. Molluscs are unique in that they use a striking variety of structural motifs to build their shells, each made of crystals with different morphologies and different calcium carbonate polymorphs. Much of want is known about mollusc shell formation comes from studies on the nacreous layer, or mother-of-pearl. In this review, we discuss two existing models on the nucleation of aragonite crystals during nacre formation: heteroepitaxial nucleation and mineral bridges. The heteroepitaxial nucleation model is based on the identification of chemical functional groups and aragonite-nucleating proteins at the centre of crystal imprints. It proposes that during nacre formation, each aragonite tablet nucleates independently on a nucleation site that is formed by acidic proteins and/or glycoproteins adsorbed on the chitin scaffold. The mineral bridges model is based on the identification of physical connections between the crystals in a stack, which results in a large number of crystals across several layers sharing the same crystallographic orientation. These observations suggest that there is one nucleation event per stack of tablets. Once the first crystal nucleates and reaches the top interlamellar matrix, it continues growing through pores, giving rise to the next layer of nacre, subsequently propagating into a stack. We compare both models and propose that they work in concert to control crystal nucleation in nacre. De novo crystal nucleation has to occur at least once per stack of aligned crystals, and is induced by nucleation sites. We suggest that further growth is controlled both by mineral bridges and nucleation sites. Finally, we discuss the role of amorphous calcium carbonate precursor in nacre formation. [ABSTRACT FROM AUTHOR]