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In the printing industry quality is key, this is because a product is printed for a better appearance or to convey information. If the packaging for a product looks bad customers will get a bad first impression of the product. The quality of the print can be affected by many different factors. The material properties of the paperboard such as stiffness, surface roughness, and thickness. It could also be affected by the coating of the paperboard, the properties of the ink, the material properties of the printing form, etc. In this thesis, the effect of the contact time and the maximum pressure in the nip of a flexographic printing press was studied. To separate these variables six different desirable pressure pulses were decided upon. Three of them where the contact time remains constant while the maximum pressure changes, and three other pulses where the maximum pressure is constant while the contact time changes. The printing was done in an IGT F1 laboratory printing press. The different pressure pulses were achieved by using three different printing forms and varying the force settings in the printing press. The mottle results from the mottle analysis do not show a clear reliance on the contact time or maximum pressure. Instead, the stiffness of the printing forms influences the results to such an extent that it overshadows any effect that the contact time or maximum pressure has. In the case of dot gain, it can be determined that a larger impression leads to more dot gain. However here the stiffness of the printing plays a large role, and no clear conclusions can be drawn when strictly comparing contact time or maximum pressure. Inom den grafiska industrin är kvalitet avgörande, detta eftersom en produkt trycks för att se bra ut eller för att förmedla ett budskap. Om förpackningen för en produkt ser dålig ut så får kunderna ett dåligt första intryck av produkten. Kvaliteten på trycket kan påverkas av många olika faktorer. Kartongens materialegenskaper såsom styvhet, ytjämnhet och tjocklek. Det kan också påverkas av kartongens beläggning, bläckets egenskaper, tryckplåtens materialegenskaper etcetera. I denna uppsats undersöktes effekten av kontakttiden och det maximala trycket i trycknypet i en flexografisk tryckpress. För att separera dessa variabler bestämdes sex olika önskvärda tryckpulser. Tre av dem var pulser med konstant kontakttid medan det maximala trycket justeras, och tre andra pulser där det maximala trycket hölls konstant medan kontakttiden justerades. Experimenten genomfördes i en IGT F1 laboratorietryckpress. De olika tryckpulserna uppnåddes genom att använda tre olika tryckplåtar och variera kraftinställningarna i tryckpressen. Analysen av provens flammighet visar inte ett tydligt beroende av kontakttiden eller maximalt tryck. Det är i stället tryckplåtarnas styvhet som påverkar resultaten mest, de påverkar resultaten i en sådan stor utsträckning att det inte går att dra några slutsatser om kontakttiden och det maximala tryckets påverkan på resultatet. Från resultaten av punktförstoring kan slutsatsen dras att högre intryckning ger mer punktförstoring. Men även i detta fall så spelar styvheten för tryckplåtarna väldigt stor roll och inga slutsatser kan dras för vare sig kontakttid eller maximalt tryck.

Since the early 1990s, squash production in Costa Rica has been affected by a whitefly-transmitted disease characterized by stunting and yellow mottling of leaves. The squash yellow mottle disease (SYMoD) was shown to be associated with a bipartite begomovirus, originally named squash yellow mild mottle virus (SYMMoV). It was subsequently established that SYMMoV is a strain of melon chlorotic leaf curl virus (MCLCuV), a bipartite begomovirus that causes a chlorotic leaf curl disease of melons in Guatemala. In the present study, the complete sequences of the DNA-A and DNA-B components of a new isolate of the strain MCLCuV-Costa Rica (MCLCuV-CR) were determined. Comparisons of full-length DNA-A sequences revealed 97% identity with a previously characterized isolate of MCLCuV-CR and identities of 90 to 91% with those of isolates of the strain MCLCuV-Guatemala (MCLCuV-GT), which is below or at the current begomovirus species demarcation threshold of 91%. A more extensive analysis of the MCLCuV-CR and -GT sequences revealed substantial divergence in both components and different histories of recombination for the DNA-A components. The cloned full-length DNA-A and DNA-B components of this new MCLCuV-CR isolate were infectious and induced SYMoD in a range of squashes and in pumpkin, thereby fulfilling Koch’s postulates for this disease. However, in contrast to MCLCuV-GT, MCLCuV-CR induced mild symptoms in watermelon and no symptoms in melon and cucumber. Taken together, our results indicate that MCLCuV-CR and -GT have substantially diverged, genetically and biologically, and have evolved to cause distinct diseases of different cucurbit crops. Taxonomically, these viruses are at the strain/species boundary, but retain the designation as strains of Melon chlorotic leaf curl virus under current International Committee on Taxonomy guidelines.

During a survey in a tomato field in Luziânia (Goiás State, Brazil), a plant showing mottling, chlorotic spots, and leaf distortion was found. A new bipartite begomovirus was found by Nanopore sequencing, and the full DNA-A sequence was confirmed by Sanger sequencing. The highest nucleotide identity match of this DNA-A genome (2596 bases) was 81.65% with tomato golden leaf deformation virus (HM357456). Due to the current species demarcation criterion of 91% of nucleotide identity (DNA-A), we propose it as a new member of the genus Begomovirus, named Tomato mottle leaf distortion virus.

Passionfruit plantings in Vietnam increased to 10,000 ha in 2019. However, outbreaks of passionfruit woodiness disease (PWD) have become a serious threat to production. In this study, five virus isolates (DN1, DN4, NA1, GL1, and GL2) were collected from different areas of Vietnam. Their causal roles in PWD were verified by back-inoculation to passionfruit. Analyses of coat protein (CP) and genomic sequences revealed that the GL1 isolate is closely related to East Asia Passiflora virus (EAPV) AO strain of Japan (polyprotein nt and aa identities of 98.1 and 98.2%, respectively), and the GL2 isolate is related to Telosma mosaic virus (TelMV) isolate PasFru, China (polyprotein nt and aa identities of 87.1 and 90.9%, respectively). CP comparison, host range, and cytological characterization indicated that DN1, DN4, and NA1 are potyviruses but are different from EAPV and TelMV. Phylogenic analyses of their CP and genome sequences indicated that these three isolates and the passionfruit severe mottle-associated virus Fujian isolate of China belong to a distinct clade, which does not meet the threshold (76% nt identity of polyprotein) to be regarded as any of potyviral species. Thus, a new species name, Passiflora mottle virus, (PaMoV), has been proposed by the International Committee on Taxonomy of Viruses. A rabbit antiserum was produced against the CP of DN1, and it can distinguish PaMoV from TelMV and EAPV in western blotting and enzyme-linked immunosorbent assay (ELISA) without cross-reactions. Field surveys of 240 samples by ELISA and reverse transcription PCR found that PWD in Vietnam is caused mainly by PaMoV, followed by EAPV, mixed infection of PaMoV and EAPV, and rare cases of TelMV.

Golden trumpet (Allamanda cathartica) plants were observed to exhibit mottling and distortion symptoms on leaves. The genome of an associated begomovirus (Al-K1) was amplified by rolling-circle amplification, cloned, and sequenced. The viral genome consisted of two circular ssDNA molecules, and the organization of the ORFs was similar to those of DNA-A and DNA-B components of bipartite begomoviruses. The size of DNA-A (KC202818) and DNA-B (MG969497) of the begomovirus was 2772 and 2690 nucleotides, respectively. Sequence analysis revealed that the DNA-A and DNA-B components shared the highest sequence identity with duranta leaf curl virus (MN537564, 87.8%) and cotton leaf curl Alabad virus (MH760452, 81.0%), respectively. Interestingly, the Al-K1 isolate shared significantly less nucleotide sequence identity with allamanda leaf curl virus (EF602306, 71.6%), the only monopartite begomovirus reported previously in golden trumpet from China. Al-K1 shared less than 91% sequence identity with other begomoviruses, and hence, according to the latest ICTV guidelines for species demarcation of begomoviruses, Al-K1 is proposed to be a member of a new species, and we propose the name "allamanda leaf mottle distortion virus" (AllLMoDV-[IN-Al_K1-12]) for this virus. AllLMoDV was detected in various golden trumpet samples from different locations by PCR with specific primers based on the genome sequence determined in this study. Our study provides evidence of the occurrence of a new bipartite begomovirus in a perennial ornamental plant in India.

Print mottle is a serious and common uneven printing defect that occurs when printing coated paper by the offset multicolor printing process. It is characterized by a non-uniform appearance in terms of brightness, gloss, or color density that appears mostly in solid printed areas. Back-trap print mottle and water-interference print mottle occur when the quality of the paper substrate, especially the coating layer quality, is not satisfactory. To cope with this quality problem of coated papers, the understanding of the offset printing process, the requirements of coated-paper quality, and the reasons for this problem should be addressed. In this review, the basic process of offset printing and the mechanisms of print mottles were explored, the importance of coating uniformity in both the coating structure and process was reviewed, and the approaches to cope with print mottle were introduced.

Viola mottle virus (VMoV) was discovered in Viola odorata showing symptoms of reduced growth, leaf mottling, and whitish stripes on flowers in northern Italy in 1977. This virus has been provisionally classified as a member of the genus Potexvirus based on its morphological, serological, and biological characteristics. However, since genetic information of VMoV has never been reported, the taxonomic status of this virus is unclear. Here, we report the first complete genome sequence of VMoV to clarify its taxonomic position. Its genomic RNA is 6,052 nucleotides long, excluding the 3'-terminal poly(A) tail, and has five open reading frames (ORFs) typical of potexviruses. Among potexviruses, VMoV showed the most similarity to tulip virus X (TVX) with 81.1-81.2% nucleotide and 90.4-90.7% amino acid sequence identity in ORF1 and 82.9-83.5% nucleotide and 93.2-95.2% amino acid sequence identity in ORF5. These values are much higher than the species demarcation threshold for the genus. Phylogenetic analysis also indicated that VMoV is nested within the clade of TVX isolates. These data demonstrate that VMoV and TVX are members of the same species.

Molecular identification of Pepper yellow leaf curl Indonesia virus on chili pepper in Nusa Penida Island. Pepper yellow leaf curl Indonesia virus (PYLCV) has been reported as caused yellow leaf curl disease in Bali Island since early 2012. Dominant symptoms of PYLCV infection in chili pepper were yellowing, leaf curl, yellow mosaic, and mottle. Bemisia tabaci, has been known to vector on the case yellow leaf curl disease. Observations on the Nusa Penida Island in 2020 showed symptoms such as yellow leaf curl disease, however, identification of PYLCV in Nusa Penida Island has not been studied. Molecular identification was conducted using polymerase chain reaction and sequence analysis. Data collected in this study was disease symptoms and disease incidence. The results showed that dominant disease symptoms caused by virus from Nusa Penida were yellow mosaic, yellowing, and mottle. Universal DNA fragments of 912 bp were successfully amplified from 50 leaf samples using Begomovirus degenerate primers SPG 1 (5’-CCCCKGTGCGWRAATCCAT-3’) and SPG 2 (5’ATCCVAA YWTYCAGGGAGCT-3’). Sequence analysis showed that the isolate from Nusa Penida was a Pepper yellow leaf curl Indonesia virus with a 98–100% homology with several reference isolates.

Piper yellow mottle virus (PYMoV) is the most frequently occurring virus causing mottle disease in black pepper plants in Sukabumi, West Java. As a pararetrovirus, PYMoV occurs in the plant as endogenous (inactive) and episomal (active, infectious) forms. Research was carried out to detect and identify PYMoV from leaf and berry samples by polymerase chain reaction (PCR) and reverse transcription-PCR (RT-PCR) followed by sequencing and nucleotide sequence analysis. Both endogenous and episomal forms of PYMoV were successfully detected from leaf and berry samples, although the endogenous form was more numerous than the episomal form. Results from black pepper berries proved the existence of both forms within single plants. It was further confirmed that endogenous and episomal PYMoV from the leaves and berries of the same plant had identical sequences, indicating the same isolates. This study is the first report of an endogenous and episomal form of PYMoV in a single plant.

A multiplex reverse-transcription polymerase chain reaction (RT-PCR) system was modified and evaluated for the simultaneous detection of multiple viruses in coinfected lily plants. Four major lily viruses, namely, lily symptomless, cucumber mosaic, lily mottle, and plantago asiatica mosaic viruses, were targeted by simultaneous detection. Analysis of PCR products confirmed the amplification of virus-specific DNA fragments of the expected sizes and nucleotide sequences from the target viruses. The cDNAs from singly infected plant samples were used as positive controls, and multiple infected samples were used to develop the multiplex RT-PCR system, which was then applied to leaf samples from diverse lily species and hybrids. The modified multiplex RT-PCR was successfully validated on the simultaneous detection of these viruses.

Seed coat colour is an important quality trait, domestication trait and morphological marker, and is closely associated with flavonoid and anthocyanin metabolism pathways. The seed coat colour of adzuki bean, an important legume crop, influences the processing quality of its paste, the commodity and its nutritional quality. In this study, the genetic relationships of seed coat colour were analysed using 12 hybridized combinations of F2 individuals and four F3 families derived from hybridized combinations between the accessions of eight seed coat colours. The loci of the colour traits were analysed based on phenotypes and using the chi-square test. Ivory colour is recessive to red and is controlled by a single R locus. Black, black mottle on grey, black mottle on red, light brown, golden and brown are all dominant to red. The phenotypes of black mottle on red, light brown, golden and brown are all controlled by a single genetic locus. Black mottle on grey is controlled by two loci. Black is controlled with two loci, and the black locus shows dominant epistasis to another locus. A genetic model of these seed coat colours was predicted. Our results will be important for gene mapping and cloning of seed coat colour characters and for providing further insight into the regulatory network of seed coat colour.

A potyvirus infecting chili pepper (Capsicum spp) crops has been characterized. The complete coat protein (CP) gene was obtained. Pairwise comparisons showed that the CP shares 82.8% nucleotide sequence identity and 83.5% amino acid identity with pepper severe mottle virus - PepSMoV (KT896752), a putative potyvirus previously found in pepper crops in Venezuela. These results suggest that this isolate found infecting chili crops in Colombia belongs to Pepper severe mottle virus (PepSMoV) species. To confirm the presence of PepSMoV in three varieties of chili pepper leaf samples collected in Colombia, specific primers were designed. Mechanical inoculation assays were successful and PepSMoV was transmitted to chili pepper plants, which developed severe mosaic symptoms and leaf deformation. To our knowledge this is the first report of the molecular and biological characterization PepSMoV which affects pepper crops in Colombia.

Low-dose computed tomography (LDCT) image often contains mottle noise and streak artefacts, which seriously interfere with clinical diagnosis. In this study, the separation-based (SEPB) method is proposed for mottle noise and streak artefacts suppression and structure preservation. In it, the LDCT image is decomposed into the structural image with residual mottle noise and the streak artefacts image with residual structural details by the image decomposition structural-preserving image smoothing method. The structural image is filtered by the K-singular value decomposition algorithm to remove the residual mottle noise, and the structural details in the streak artefacts image are extracted by the morphological component analysis theory. The extracted structural details are added to the filtered structural image to get the LDCT result image. Meanwhile, in the process of extracting the structural details, the streak artefacts dictionary learned from the streak artefacts image is corrected by the local intuitional fuzzy entropy to remove its structural atoms. The experiments are conducted on the modified Shepp–Logan phantom, the pelvis phantom and the clinical abdominal data to evaluate the proposed SEPB method. Compared to several comparative denoising methods, the experimental results show that the SEPB method has better performance in subjective visual effect and objective indicators.

In Mexico, okra (Abelmoschus esculentus L.) is grown mainly for export, but its production is affected by various pests and diseases. Plants with mosaic and chlorotic mottling symptoms were collected in Iguala, Mexico. The transmission tests revealed that the disease was not transmitted neither by seed nor by mechanical means. However, it was transmitted by grafting and by insect vectors. The entire nucleotide sequences of the DNA-A component of three isolates were obtained by PCR and sequencing; all of them were bipartite begomoviruses. The composition of the DNA-A component consists of five open reading frames (ORFs), one in the sense orientation (AV1) and four in antisense orientation (AC1, AC2, AC3 and AC4), in addition to the common region (CR). Sequence comparison and demarcation analyses revealed the presence of a new strain of Okra yellow mosaic Mexico virus—[Mexico:Isolate 13–14:2010], and a new species not previously reported and tentatively named Okra mottle Mexico virus, OMoMV—[Mexico:2005]. The phylogenetic analysis placed the new species in the clade that contains Chino del tomate virus. Recombination analyses suggest that this virus has a putative recombinant event of 93 bases, which may have originated across the exchange of genomic segments in the ORF AV1 + CR region from Chino del tomate virus, Okra yellow mosaic Mexico virus and Corchorus yellow spot virus.

Rice is an important staple food in Nigeria, affected by several diseases especially viruses. This study was carried out to evaluate the incidence and severity of two important viruses on rice plants and to identify associated insects in the Federal Capital Territory (F.C.T), Abuja in 2019. Field experiment was carried out from June to October, 2019 at the Teaching and Research Farm of the Faculty of Agriculture, University of Abuja, Nigeria, where ten rice varieties were assessed for incidence and severity. The seed and leaf samples were collected for serological indexing. Data collected was subjected to statistical analysis using SPSS and mean separation was done with Duncan Multiple Range Test. Of the 210 leaf samples collected, FARO 61 and 44 had the lowest incidence (19%), while FARO 65 recorded the highest (25.3%). FARO 52 recorded the highest severity (46%) while FARO 61 and FARO 60 had the lowest severity (30.1%) for rice yellow mottle sobemo-virus (RYMV) and maize streak geminivirus (MSV). Insects such as Spittle bug (Locris rubens and Poophilus costalis), Ladybird beetle (Cheilomenes sulphurea) and Groundhopper (Paratettix sp) were trapped on the field. All rice seed and leaf samples collected did not test positive to RYMV and MSV using Enzyme-Linked immunosorbent assay (ELISA). This study provides the first research work on rice viruses in the FCT and further studies are recommended. Key words: Nigeria, rice, rice yellow mottle sobemo-virus (RYMV), maize streak geminivirus (MSV), incidence, severity, virus symptoms, enzyme linked immuno sorbent assay (ELISA).

In this study, the effect of a Kenyan strain of Sweetpotato leaf curl virus (SPLCV) and its interactions with Sweetpotato feathery mottle virus (SPFMV) and Sweetpotato chlorotic stunt virus (SPCSV) on root yield was determined. Trials were performed during two seasons using varieties Kakamega and Ejumula and contrasting in their resistance to sweetpotato virus disease in a randomized complete block design with 16 treatments replicated three times. The treatments included plants graft inoculated with SPLCV, SPFMV, and SPCSV alone and in possible dual or triple combinations. Yield and yield-related parameters were evaluated at harvest. The results showed marked differences in the effect of SPLCV infection on the two varieties. Ejumula, which is highly susceptible to SPFMV and SPCSV, suffered no significant yield loss from SPLCV infection, whereas Kakamega, which is moderately resistant to SPFMV and SPCSV, suffered an average of 47% yield loss from SPLCV, despite only mild symptoms occurring in both varieties. These results highlight the variability in yield response to SPLCV between sweetpotato cultivars as well as a lack of correlation of SPLCV-related symptoms with yield reduction. In addition, they underline the lack of correlation between resistance to the RNA viruses SPCSV and SPFMV and the DNA virus SPLCV.[Formula: see text] Copyright © 2020 The Author(s). This is an open access article distributed under the CC BY 4.0 International license .

Chilli pepper (Capsicum annuum L.) is one of the most important crops in Yunnan Province, China. An orthotospovirus isolate 14YV855 was isolated from a diseased chilli pepper plant exhibiting yellow ringspots and necrosis on leaves in Shiping County, Honghe Hani and Yi Autonomous Prefecture, Yunnan Province in 2014. The complete genome sequence of 14YV855 was determined. The small, medium, and large RNAs are 3,428, 4,781, and 8,917 nucleotides long, respectively. The complete nucleocapsid (N) protein of 14YV855 shares a high amino acid identity of 84.8 to 89.9% to that of Capsicum chlorosis virus (CaCV), Groundnut bud necrosis virus (GBNV), Watermelon bud necrosis virus (WBNV), and Watermelon silver mottle virus (WSMoV), which is slightly less than the 90% identity threshold for the demarcation of new Orthotospovirus sp. Phylogenetic analyses revealed that the N protein and RNA-dependent RNA polymerase of 14YV855 are the most related to WSMoV, while the NSs, NSm, and Gn/Gc proteins are similar to those of GBNV. As expected, 14YV855 is serologically related to CaCV, GBNV, WBNV, and WSMoV when the monoclonal antibody against the N protein of WSMoV was used; however, 14YV855 can be distinguished from other orthotospoviruses by reverse-transcription PCR using the specific primers. Our results indicate that 14YV855 is a new Orthotospovirus sp. belonging to the WSMoV serogroup and is provisionally named Chilli yellow ringspot virus.

Chilli is an economically important crop throughout the world. Chillies are grown extensively in India leading to highest productivity in world. Viruses are reported as important constraints in hot pepper production, which lowers yield and result in poor fruit quality. Pepper mottle virus (PepMoV) disease was recorded on hot pepper in various district of Punjab during the year 2014–2015. Round the year survey of Punjab revealed various symptoms on hot pepper on different cultivars such as vein-banding, mosaic, puckering and mottling during early crop season (March–June). Whereas, leaf curl type symptoms started appearing from mid-season (June–July). Plants showing symptoms viz., mottling and greening of leaf veins, blistering were found to be associated with PepMoV infection. Among the surveyed districts, maximum incidence of mottle disease of hot pepper was recorded in Patiala (21%) followed by Sangrur (19%) and SAS nagar (15%). Universal primers specific to potyviruses were used to characterize the virus associated with the disease.

Herbaspirillum rubrisubalbicans is the causal agent of red stripe disease (RSD) and mottle stripe disease of sorghum and sugarcane, respectively. In all, 63 genotypes of Sorghum bicolor were inoculated with H. rubrisubalbicans, with 59 showing RSD symptoms. Quantitative trait loci (QTL) analysis in a recombinant inbred line (RIL) population identified several QTL associated with variation in resistance to RSD. RNA sequencing analysis identified a number of genes whose transcript levels were differentially regulated during H. rubrisubalbicans infection. Among those genes that responded to H. rubrisubalbicans inoculation were many involved in plant–pathogen interactions such as leucine-rich repeat receptors, mitogen-activated protein kinase 1, calcium-binding proteins, transcriptional factors (ethylene-responsive element binding factor), and callose synthase. Pretreatment of sorghum leaves with the pathogen-associated molecular pattern (PAMP) molecules flg22 and chitooctaose provided protection against subsequent challenge with the pathogen, suggesting that PAMP-triggered immunity plays an important role in the sorghum immunity response. These data present baseline information for the use of the genetically tractable H. rubrisubalbicans–sorghum pathosystem for the study of innate immunity and disease resistance in this important grain and bioenergy crop. Information gained from the use of this system is likely to be informative for other monocots, including those more intractable for experimental study (e.g., sugarcane).

Chinese jujube (Ziziphus jujuba Mill.) is a native fruit crop in China. Leaf mottle and dapple fruit disease is prevalent in cultivated jujube plants grown at Aksu in Xinjiang Uygur Autonomous Region of China. Jujube yellow mottle-associated virus (JYMaV), a tentative member in the genus Emaravirus, was recently identified from mottle-diseased jujube plants grown in Liaoning Province in China, but its incidence and genetic diversity in China is unknown. In this study, the genome sequences of three JYMaV isolates from two jujube cultivars and one jujube variant were determined by high-throughput sequencing (HTS) for small RNA and rRNA-depleted RNA coupled with RT-PCR assays. Comparison of these sequences together with sequences of the viral RNA segments derived by primer set 3C/5H-based RT-PCR revealed that genetic diversity was present in the virus populations and high sequence variation occurred at the non-translational regions of each of the viral genomic segments. Field investigation confirmed the close association of the virus with leaf mottle symptoms of jujube plants. Furthermore, this study revealed that P5 encoded in the viral RNA5 displayed a nuclear localization feature differing from the plasmodesma (PD) subcellular localization of the virus movement protein (P4), and the two proteins could interact with each other in the BiFC assays. Our study provides a snapshot of JYMaV genetic diversity in its natural hosts.

Screening of capsicum hybrids were conducted under protected cultivation during kharif 2018 and rabi 2018-19. The results indicated that out of fourteen hybrids screened, none of them were found to be highly resistant, resistant and moderately resistant during both the seasons. During kharif 2018 out of fourteen hybrids screened, six hybrids were found to be moderately susceptible viz., Maxibell, Shristika, SV1865PB, Asha, Arka Gaurav and Arka Basanti for leaf curl disease. For mild mottle disease, hybrids Arka Gaurav and Arka Basanti recorded moderately resistant reaction. However, during rabi 2018-19 eight hybrids viz., Maxibell, Shristika, SV1865PB, Asha, Indra, Arka Gaurav, Arka Basanti and Rithal showed susceptible reaction for leaf curl disease. Whereas, eight hybrids viz., Shristika, SV1865PB, Asha, Indra, Arka Gaurav, Arka Basanti, 35-160-R2 and NSX 8 recorded moderately susceptible for mosaic disease. The symptoms observed during screening included mosaic and mottling, yellow discoloration, vein clearing, leaf deformation and narrowing, stunted plant growth, reduced fruit setting and light green colour mottling symptoms on fruits.

A tobamovirus was isolated from leaves of Scopolia japonica that had mild yellowing. Back-inoculation of healthy Scopolia japonica with the isolated virus induced mild mottle on upper leaves. Phylogenetic analysis of the coat protein and replicase protein revealed that the newly isolated tobamovirus is related to yellow tailflower mild mottle virus. The highest identity of the 6350-nucleotide sequence of the whole genome shared with that of other tobamoviruses was 71%. According to species demarcation criterion for the genus Tobamovirus, our result suggests that scopolia mild mottle tobamovirus is a new species within the genus Tobamovirus.

Texture softening of pickled cucumbers does not meet consumers’ quality expectations and leads to economic losses. The factor(s) triggering this phenomenon is still unknown. We investigated the importance of plant viruses such as Cucumber green mottle mosaic tobamovirus (CGMMV) and Zucchini yellow mosaic potyvirus (ZYMV) in the context of softening of pickles. Cucumber plants (Cucumis sativus) were infected by mechanical inoculation, grown under greenhouse conditions and tested positive for the viral infection by ELISA. The severity of virus infection was reflected in yield and symptom expression. Histological and morphological alterations were observed. All fruits were pasteurized, separately stored in jars and subjected to texture measurements after four, six and 12 months. CGMMV-infections were asymptomatic or caused mild symptoms on leaves and fruit, and texture quality was comparable to control. At the same time, fruits of ZYMV-infected plants showed severe symptoms like deformations and discoloration, as well as a reduction in firmness and crunchiness after pasteurization. In addition, histological alterations were detected in such fruits, possibly causing textural changes. We conclude that plant viruses could have a considerable influence on the firmness and crunchiness of pickled cucumbers after pasteurization. It is possible that the severity of symptom expression has an influence on texture properties. European Agricultural Fund for Rural Development

Mottling within print-through and show-through is caused by the variability of the local optical properties of the sheet. This mottling is visually disturbing and a mark of poor paper quality. The ability to predict print-through mottle of printed paper by measuring show-through mottle on the unprinted sheet would be a valuable asset for paper machine control. We examined the relationship between print-through mottle and show-through mottle. We worked with nine samples of 60 lb. uncoated fine paper (90 g/m2), from various North American paper companies, that were printed on an offset press, 400K (400% Black), on both sides. A show-through mottle instrumental determination technique was developed using an existing Fast Fourier Transform-based algorithm. The nine samples examined were ranked similarly by the visual evaluation of print-through mottle and by the instrumental determination of show-through mottle. We thus established that show-through on the unprinted sheet can be used as a reliable predictor of print-through, therefore saving time and money for papermakers. We also found a significant two-sidedness in show-through for some of the samples.

Leaf mottle and wilt (LM) of sunflower caused by Verticillium dahliae is the most important disease in Argentina. LM is a monocyclic disease where microsclerotia in the soil are the primary inoculu...

This study proposes a nondestructive sorting method based on the short-wave infrared hyperspectral imaging technique (SWIR-HIT) to detect and classify watermelon seeds infected with the cucumber green mosaic mottle virus (CGMMV). Virus-infected watermelon seeds were collected from virus-infected watermelon plants. Five plates each with 81 seeds were scanned. A total of 304 mean reflectance spectra were used to develop and evaluate virus-infected seed classification models with multivariate analysis methods such as partial least squares discriminant analysis (PLS-DA), support vector machine (SVM), and least squares support vector machine (LS-SVM). To determine the optimal preprocessing method, three preprocessing methods were employed: multivariate scatter correct (MSC) as well as first- and second-derivative preprocessing with the Savitzky–Golay algorithm. Among these methods, second-derivative preprocessing with the LS-SVM method showed an approximately 75% accuracy with a 0.57 kappa coefficient for all three classification classes (infected, infection suspected, and sound seeds). Binary classification between infected and sound seeds by LS-SVM with second-derivative preprocessing showed an approximately 92% accuracy with a 0.75 kappa coefficient. To improve the classification accuracy, the genetic algorithm was implemented, and 9 bands were selected. The selected wavelengths were applied to develop and compare classification models with full wavelengths. The three-class classification with the selected bands showed an approximately 80% accuracy, whereas binary classification in infected and sound seeds showed a more than 93% accuracy with a 0.78 kappa coefficient. These results indicate that SWIR-HIT is a valuable nondestructive tool for rapidly classifying CGMMV-infected watermelon seeds using LS-SVM with raw spectra.

Highlights • Four sweetpotato viruses were confirmed to infect sweetpotato plants in northern Uganda. • Sweetpotato feathery mottle virus had the highest prevalence compared to other viruses detected. • Kitgum district had the highest number of infected sweetpotato plants compared to Gulu and Lamwo districts., The purpose of the study was to identify different viruses infecting sweetpotato and the level of co-infection and spatial distribution of the viruses within the Acholi sub-region of northern Uganda. Multiplex PCR was used to screen and determine level of co-infection in 380 sweetpotato plants. The PCR scores were computed to give overall frequency of occurrence of different viruses. The spatial distribution of viruses was represented on an ArcGIS map. Of all screened samples, 24% (92/380) were infected with at least one virus. Sweetpotato feathery mottle virus (65/92), sweetpotato chlorotic fleck virus (17/92) and sweetpotato mild mottle virus (8/92) were the most frequent viruses detected. Of sampled fields, 74% (28/38) had at least one virus-infected sweetpotato plant. The four viruses detected are the major viruses causing significant yield losses in major sweetpotato growing regions of Uganda and East Africa. The findings of limited distribution and low prevalence of the viruses in the region indicate it causes less burden to sweetpotato production in the sub-region compared with other parts of Uganda.

Pepper (Capsicum annuum) and Tomato (Solanum lycopersicum) plants showing virus-like disease symptoms were collected in 2017, 2019, and 2020, in different parts of Slovenia (Supplementary Figure 1). Total RNA was extracted from leaf tissue of individual samples using RNeasy Plant Mini kit (Qiagen) and pooled in four composite samples as follows: 2 pepper plants from 2017 (D2017), 5 pepper and 4 tomato plants from 2019 (D2019_P1), 7 tomato plants (D2020_P1), and 2 pepper and 4 tomato plants (D2020_P3) from 2020. The pooled RNA samples were sequenced using Illumina platforms, details of the sequencing experiments are in Supplementary Table 1. Reads were analyzed using CLC Genomics Workbench (v. 20.0, Qiagen) following the pipelines for plant virus discovery (Pecman et al., 2017). Reads and contigs mapping to Ranunculus white mottle ophiovirus (RWMV, GenBank accession no. AY542957 or NC_043389) were detected in all pools. The longest contig (1,255 bp) was obtained from the 2019 composite sample, mapping to the coat protein-coding RNA 3 segment of the RWMV genome (accession no. AY542957). Details of mapping, genome coverage, and other viruses detected in the pools are summarized in the Supplementary Table 1. To identify individual RWMV-infected plants from the pools, primers were designed for detection by reverse transcription-polymerase chain reaction (RT-PCR) targeting the coat protein gene (see Supplementary Table 2). Two pepper samples from two different farms, collected in 2017 and 2019 in southwest Slovenia, and four tomato samples from two different farms, collected in 2020 in central Slovenia tested positive for RWMV in RT-PCR assays. To assess the diversity of RWMV isolates, amplicons were purified using QIAquick PCR purification kit (Qiagen) and sent for Sanger sequencing. Based on maximum likelihood phylogenetic analysis, RWMV Italian and Slovenian isolates form a monophyletic clade within the genus (see Supplementary Figure 2). Pairwise nucleotide identities of the Slovenian isolates (accession no. MZ507604-MZ507609), relative to the original Italian isolate coat protein (accession no. AY542957) range from 92-97%, indicating a moderate level of diversity among isolates (see Supplementary Figure 2). Since only RWMV, bell pepper alphaendornavirus (BPEV), and pepper cryptic virus 2 (PepCV2), were present in a pepper sample from 2017, and BPEV and PepCV2 infection in pepper are not known to be associated with any of the disease symptoms (Okada et al., 2011; Saritha et al., 2016), the symptoms observed on this plant might be associated with RWMV infection. We observed mottling with interveinal chlorosis or yellowing, slight to full curling of leaves from lamina inward, as well as necrotic and aborted flowers on this plant (see Supplementary Figure 1). We cannot easily associate observed symptoms with RWMV in RWMV-positive tomatoes, since several viruses were detected in the pools containing these samples. Nevertheless, the prominent symptoms in tomato were mottling with interveinal chlorosis and leaf curling, similar to those observed in pepper. RWMV was discovered and characterized in buttercup (Ranunculus asiaticus), and detected in anemone (Anemone coronaria), from Italy (Vaira et al., 1996, 1997, 2000, 2003). It was recently detected in pepper from Australia showing veinal yellowing (Gambley et al., 2019). Here, we detected RWMV for the first time in Slovenia, and reported its first detection in tomato and pepper from Europe. These findings call for further studies on the effects of RWMV infection on tomato and pepper production, and its monitoring in neighboring European countries. Acknowledgment This study received funding from the Administration of the Republic of Slovenia for Food Safety, Veterinary Sector and Plant Protection, Slovenian Research Agency (ARRS) core financing (P4-0165), and the Horizon 2020 Marie Sklodowska-Curie Actions Innovative Training Network (H2020 MSCA-ITN) project "INEXTVIR" (GA 813542), under the management of the European Commission-Research Executive Agency. References Gambley, C., et al. 2019. New Dis. Rep. 40:13. doi:10.5197/j.2044-0588.2019.040.013. Okada, R., et al. 2011. J. Gen. Virol. 92:2664-2673. doi:10.1099/vir.0.034686-0. Pecman, A., et al. 2017. Front. Microbiol. 8:1-10. doi:10.3389/fmicb.2017.01998. Saritha, R. K., et al. 2016. VirusDisease 27:327-328. doi:10.1007/s13337-016-0327-7. Vaira, A. M., et al. 2003. Arch. Virol. 148:1037-1050. doi:10.1007/s00705-003-0016-x. Vaira, A. M., et al. 1996. Acta Hortic., 432:36-43. doi:10.17660/ActaHortic.1996.432.3. Vaira, A. M., et al. 1997. Arch. Virol. 142:2131-2146. doi:10.1007/s007050050231. Vaira, A. M., et al. 2000. Plant Dis. 84:1046-1046. doi:10.1094/PDIS.2000.84.9.1046B.

Chilli pepper is an important economic crop and virus diseases are constraints on its production. In 2018, disease surveys were conducted at a 15-ha chilli pepper plantation in Dehong, southwest of Yunnan Province, China. Throughout the chilli pepper growing season from March to September, pepper plants developed three different virus-like symptoms on leaves, including mosaic, yellow mottle and shrinkage (Fig. S1). Based on observation of virus-like symptomatic phenotypes, the field surveys indicated that the disease incidence ranged from 30% in March to a peak 100% in July, resulting in a significant loss of pepper fruit from 30 to 100% depending on plot of the field. Potyvirus-like filamentous particles, around 11*760 nm, were observed under electron microscopy in the sap of symptomatic leaves (Fig. S1). To further determine the viral species in these samples, total RNA was extracted from three symptomatic samples using a Trans ZolUp Plus RNA Kit (Trans Gene, Beijing, China). Complementary DNA (cDNA) was synthesized using oligo (dT) and M-MLV reverse transcriptase (Promega, Madison, Wisconsin, USA) according to the manufacturer's instructions, and the polymerase chain reaction (PCR) was performed using degenerate primers specific to genus Potyvirus targeting HC-Pro region (HPFor: 5-TGYGAYAAYCARYTIGAYIIIAAYG-3; HPRev: 5-GAICCRWAIGARTCIAIIACRTG-3) (Ha et al. 2008) under the following conditions: an initial denaturation at 94°C for 4min, 30 cycles of denaturation at 94°C for 30 s, annealing at 56°C for 30 s, extension at 72°C for 30s, and a 10min final extension at 72°C. An expected 683-bp DNA fragment was amplified and cloned into the pMD 18-T Vector (Takara, Japan) for sequencing. Sequence analysis using BLAST revealed that the amplicons of phenotype I (Fig. S1a) shared highest nucleotide identity (85.6%) with wild tomato mosaic virus (WTMV) isolate from Vietnam (GenBank no. DQ851495) while the amplicons of phenotype III (Fig. S1c) showed the highest nucleotide identity (93%) with chilli veinal mottle virus (ChiVMV) isolate from Sichuan, China. (GenBank no. MK405594). Amplicons of phenotype II included both sequence of above WTMV and ChiVMV, indicating co-infection of phenotype II (Fig. S1b). Phenotype I sample was used for mechanical inoculation on chilli pepper as described previously (Yang et al.2013). After ten days, virus-like symptoms similar to phenotype I were observed on leaves, and WTMV infection, but not ChiVMV infection, was confirmed by RT-PCR tests on inoculated pepper plants (Fig. S1 e, f). To further ascertain the incidence of these two viruses in the field, primers WT-F: 5'-GTTGTTGAATGTGGTTTAGTT-3' and WT-R: 5'-AGATGTGCTTTGGAAGCGACC-3' were designed based on the WTMV sequence (GenBank no. DQ851495) to amplify a 476 bp product, and primers Ch-F/Ch-R (Ch-F: 5'-AAAGAAGAACAAGCGACAGAA-3', Ch-R: 5'-CATCACGCAAATATTCAAAGC-3') were designed based on ChiVMV sequence (GenBank no. MK405594.1) to amplify a 332 bp product. RT-PCR was conducted on 31 field-collected samples, and amplicons of expected sizes, 476bp and 332bp, corresponding to WTMV and ChiVMV, respectively, were obtained and sequenced to verify their identity. The results (Fig. S2) showed that 71% (22/31) of the samples tested positive for WTMV, 90% (28/31) tested positive for ChiVMV, and 65% (20/31) were co-infected with the two viruses. The WTMV was first reported infecting wild tomatoes in Vietnam in 2008 (Ha et al. 2008), and later reported in China in Nicotiana tabacum (Sun et al. 2015), Solanum nigrum (Zhang et al. 2019), and wild eggplant (Zhang et al. 2014). To our knowledge, this is the first report of WTMV infection on chilli pepper under natural conditions. Our study revealed that the chilli pepper disease in Dehong was caused by single or co-infection of WTMV and ChiVMV. It is necessary to find effective methods to control these two viruses.

Tobamoviruses are often referred to as the most notorious viral pathogens of pepper crops. These viruses are not transmitted by invertebrate vectors, but rather by physical contact and seeds. In this study, pepper plants displaying mild mottle and mosaic symptoms were sampled in four different regions of Peru. Upon double-antibody sandwich enzyme-linked immunosorbent assay (DAS-ELISA) tests, seven samples cross-reacted weakly with antibodies against pepper mild mottle virus (PMMoV), suggesting the presence of tobamoviruses. When employing RT-PCR, conserved primers amplified cDNA fragments of viruses from two putative new tobamovirus species in the samples. The complete genome of two representative isolates were, therefore, sequenced and analysed in silico. These viruses, which were tentatively named yellow pepper mild mottle virus (YPMMoV) and chilli pepper mild mottle virus (CPMMoV), shared highest nucleotide genome sequence identities of 83 and 85 % with bell pepper mottle virus (BpeMV), respectively. Mechanical inoculation of indicator plants with YPMMoV and CPMMoV isolates did not show any obvious differences in host ranges. These viruses were also inoculated mechanically on pepper plants harbouring different resistance L alleles to determine their pathotypes. Pepper plants carrying unfunctional L alleles (L 0) to tobamoviruses were infected by all isolates and presented differential symptomatology for YPMMoV and CPMMoV. On the other hand, pepper plants carrying L 1, L 2, L 3 and L 4 alleles were resistant to all isolates, indicating that these viruses belong to pathotype P0.

Sunflower Verticillium Wilt and Leaf Mottle (SVW), caused by Verticillium dahliae (Kleb.; Vd), is a soil-borne disease affecting sunflower worldwide. A single dominant locus, known as V1, was formerly effective in controlling North-American Vd races, whereas races from Argentina, Europe and an emerging race from USA overcome its resistance. This emphasizes the need for identifying broad-spectrum genetic resistance (BSR) sources. Here we characterize two sunflower Mapping Populations (MPs) for SVW resistance: a biparental MP and the association MP from the National Institute of Agricultural Technology (INTA), under field growing conditions. Nine field-trials (FTs) were conducted in highly infested fields in the most SVW-affected region of Argentina. Several disease descriptors (DDs), including incidence and severity, were scored across four phenological stages. Generalized linear models were fitted according to the nature of each variable, adjusting mean phenotypes for inbred lines (IL) across and within FTs. Comparison of these responses allowed the identification of novel BSR sources. Furthermore, we present the first report of SVW resistance heritability, with estimates ranging from 35% to 45% for DDs related to disease incidence and severity, respectively. This study constitutes the largest SVW resistance characterization reported to date in sunflower, identifying valuable genetic resources for BSR-breeding to cope with a pathogen of increasing importance worldwide.

Background: Tomato mosaic virus (ToMV) is the most common and important pathogen of tomato crop. The infected plants show mosaic, mottle, wrinkling, reduced leaf size and uneven ripening of fruits. ToMV is transmitted mechanically, by cultural operations, farm implements and also through seed. Methods: The present study was planned to evaluate environment friendly strategies for the management of ToMV disease. Different non-chemical means viz., Elephant Ear plant extract, Eucalyptus extract, Zinc and Boron solution, NPK solution, Milk and Urea were used on four tomato varieties (Tanja, Chico, Manik and Sahil). All the treatments were used at three different concentrations (1%, 2% and 3%) and replicated three times. Result: The maximum disease reduction was recorded in plants treated with NPK solution (16.35%) and minimum in plants treated with Elephant Ear plant extract (29.65%). The maximum mean disease severity was recorded at 1 percent concentration of all the treatments (32.46%) which was statistically significant from that of 2 and 3% (24.74% and 19.23%), respectively. Among the varieties, minimum disease severity was recorded in Manik (24.64%) variety and maximum in Chico (31.27%) variety. All the treatments contributed towards reduction in disease severity of which NPK solution being most efficient.

In Vietnam, the giant mottle eel Anguilla marmorata is the most widely distributed species and being exploited for seed in aquaculture as well as for human consumption. This study aims to investigate the basic nutritional components of the fish. The eels were collected from six locations of Thua Thien Hue province, with weights from 5 to 3200 g. In addition, the content of lipid in skin and tissue was also examined. The results show that eel flesh has a relatively high nutritional value. The water, protein, lipid, and total sugar content of the fish meat is 60.4 ± 0.94%, 19.54 ± 4.31%, 18.2 ± 1.02%, and 1.34 ± 0.34 (mg/g), respectively. The nutritional components of the eel have a good correlation with the weight according to the equation: Y = a × ln (W) + b (where W is the weight of eels; Y is the content of nutritional components; a is the correlation coefficient b is a constant) with r > 0.9. The lipid content of the fish skin is higher than that of muscle and meat.

Cherry rusty mottle-associated virus (CRMaV), which belongs the genus Robigovirus of the family Betaflexiviridae, is strongly associated with cherry rusty mottle disease of sweet cherry, Prunus avium. Here, we report on the successful development of an Agrobacterium-based inoculation system for a cloned CRMaV cDNA construct. Agro-inoculation of virus-free cherry rootstock 'Krymsk6' [P. cerasus x (P. cerasus x P. maackii)] resulted in the development of chlorotic yellow mottle symptoms on systemic leaves beginning at 50 days post inoculation. The presence of CRMaV in 'Krymsk6' agro-inoculated plants was confirmed by RT-PCR and ELISA. Subsequently, CRMaV from agro-inoculated 'Krymsk6' was graft-transmissible onto virus-free sweet cherry rootstock P. avium 'Mazzard' as evidenced by the production of typical cherry rusty mottle symptoms beginning at 35 days post grafting, and further confirmed by western blotting and RT-PCR. These results showed conclusively that CRMaV is the causal agent of cherry rusty mottle disease in sweet cherry. The reverse genetic system presented in this study can be used as a tool to investigate the molecular biology of CRMaV and also a template for infectious clone development for other viruses in the genus Robigovirus.

Background Physostegia chlorotic mottle virus (PhCMoV; genus: Alphanucleorhabdovirus, family: Rhabdoviridae) and tomato brown rugose fruit virus (ToBRFV; genus: Tobamovirus, family: Virgaviridae) are newly emerging plant viruses that have a dramatic effect on tomato production. Among various known virus-control strategies, RNAi-mediated defence has shown the potential to protect plants against various pathogens including viral infections. Micro(mi)RNAs play a major role in RNAi-mediated defence. Methods Using in silico analyses, we investigated the possibility of tomato-encoded miRNAs (TomiRNA) to target PhCMoV and ToBRFV genomes using five different algorithms, i.e., miRanda, RNAhybrid, RNA22, Tapirhybrid and psRNATarget. Results The results revealed that 14 loci on PhCMoV and 10 loci on ToBRFV can be targeted by the TomiRNAs based on the prediction of at least three algorithms. Interestingly, one TomiRNA, miR6026, can target open reading frames from both viruses, i.e., the phosphoprotein encoding gene of PhCMoV, and the two replicase components of ToBRFV. There are currently no commercially available PhCMoV- or ToBRFV-resistant tomato varieties, therefore the predicted data provide useful information for the development of PhCMoV- and ToBFRV-resistant tomato plants.