1. Genome-wide association study of VHSV-resistance trait in Paralichthys olivaceus
- Author
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D.S. Liyanage, Sukkyoung Lee, Hyerim Yang, Chaehyeon Lim, W.K.M. Omeka, W.M. Gayashani Sandamalika, H.M.V. Udayantha, Gaeun Kim, Subothini Ganeshalingam, Taehyug Jeong, Seong-Rip Oh, Seung-Hwan Won, Hyoung-Bum Koh, Mun-Kwan Kim, David B. Jones, Cecile Massault, Dean R. Jerry, and Jehee Lee
- Subjects
Novirhabdovirus ,Fish Diseases ,Hemorrhagic Septicemia, Viral ,Environmental Chemistry ,Animals ,General Medicine ,Aquaculture ,Flounder ,Aquatic Science ,Genome-Wide Association Study - Abstract
In flounder aquaculture, selective breeding plays a vital role in the development of disease-resistant traits and animals with high growth rates. Moreover, superior animals are required to achieve high profits. Unlike growth-related traits, disease-resistant experiments need to be conducted in a controlled environment, as the improper measurement of traits often leads to low genetic correlation and incorrect estimation of breeding values. In this study, viral hemorrhagic septicemia virus (VHSV) resistance was studied using a genome-wide association study (GWAS), and the genetic parameters were estimated. Genotyping was performed using a high-quality 70 K single nucleotide polymorphism (SNP) Affymetrix® Axiom® myDesign™ Genotyping Array of olive flounder. A heritability of ∼0.18 for resistance to VHSV was estimated using genomic information of the fish. According to the GWAS, significant SNPs were detected in chromosomes 21, 24, and contig AGQT02032065.1. Three SNPs showed significance at the genome-wide level (p 1 × 10
- Published
- 2021