38 results on '"N. Kelleher"'
Search Results
2. COVID-19 Vaccine Provider Access and Vaccination Coverage Among Children Aged 5–11 Years — United States, November 2021–January 2022
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Christine Kim, Randy Yee, Roma Bhatkoti, David Carranza, Danielle Henderson, Sachiko A. Kuwabara, James Phillip Trinidad, Sandra Radesky, Allen Cohen, Tara M. Vogt, Zachary Smith, Chris Duggar, Kevin Chatham-Stephens, Christina Ottis, Krista Rand, Travis Lim, Alice F. Jackson, Donald Richardson, Aaron Jaffe, Rachael Lubitz, Ryan Hayes, Aran Zouela, Deborah L. Kotulich, Patrick N. Kelleher, Angela Guo, Satish K. Pillai, and Anita Patel
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Health (social science) ,Health Information Management ,Epidemiology ,Health, Toxicology and Mutagenesis ,General Medicine - Published
- 2022
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3. TESTICULAR DIFFUSE LARGE B‐CELL LYMPHOMA: CLINICO‐BIOLOGICAL CHARACTERIZATION, EVALUATION OF TREATMENT RESPONSE AND SURVIVAL
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J. Bosch, Pablo Mozas, T. Gustavo, Neus Villamor, G. Frigola, N. Kelleher, Ferran Nadeu, Silvia Martín, Laura Magnano, Alfredo Rivas-Delgado, Armando López-Guillermo, Tycho Baumann, Olga Balagué, Sílvia Beà, M. Grau, A. Muntañola, C. Barcena, A. Martín García-Sancho, Miguel Alcoceba, E. Campo, Cristina López, Fina Climent, Juan-Manuel Sancho, Eva González-Barca, Eva Giné, L. Luizaga, and Andrea Rivero
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Cancer Research ,Treatment response ,Pathology ,medicine.medical_specialty ,Oncology ,business.industry ,medicine ,Hematology ,General Medicine ,medicine.disease ,business ,Diffuse large B-cell lymphoma - Published
- 2021
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4. DOUBLE‐HIT (DHL) AND TRIPLE‐HIT LYMPHOMAS (THL): REAL LIFE EXPERIENCE OF 46 CONSECUTIVE PATIENTS FROM A SINGLE INSTITUTION IN SPAIN
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Ana Oliveira, Anna Sureda, Lourdes Escoda, E. González Barca, Juan-Manuel Sancho, M. Kara, Jordina Rovira, E. Domingo Domenech, N. Kelleher, José-María Ribera, and Maite Encuentra
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Cancer Research ,Double hit ,Pediatrics ,medicine.medical_specialty ,Oncology ,business.industry ,Medicine ,Hematology ,General Medicine ,Single institution ,business - Published
- 2021
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5. BRENTUXIMAB VEDOTIN PLUS CHP AS FIRST‐LINE TREATMENT IN CD30 + PERIPHERAL T‐CELL LYMPHOMAS: REAL LIFE EXPERIENCE FROM A SINGLE INSTITUTION IN SPAIN
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M. Rodriguez‐Luaces, S. Verdesoto, José-María Ribera, Anna Sureda, Jordina Rovira, J. M. Sancho Cia, Ana Oliveira, Lourdes Escoda, E. Domingo Domenech, Maite Encuentra, N. Kelleher, E. González Barca, and D. Blazevic
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Oncology ,Cancer Research ,medicine.medical_specialty ,CD30 ,business.industry ,T cell ,Hematology ,General Medicine ,Peripheral ,First line treatment ,medicine.anatomical_structure ,Internal medicine ,medicine ,Single institution ,Brentuximab vedotin ,business ,medicine.drug - Published
- 2021
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6. R‐GDP SCHEDULE IN PATIENTS WITH REFRACTORY OR RELAPSED B‐CELL NON‐HODGKIN LYMPHOMA (B‐NHL)
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Eva González-Barca, Silvia Martín, Juan-Manuel Sancho, J Villarroel, Rocío Parody, José-María Ribera, Lourdes Escoda, A Vicent, Jordina Rovira, C de la Fuente, Anna Sureda, N. Kelleher, Miguel A. Rodríguez, and L Fox
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Oncology ,Cancer Research ,Schedule ,medicine.medical_specialty ,business.industry ,Hematology ,General Medicine ,Refractory ,Internal medicine ,medicine ,B-Cell Non-Hodgkin Lymphoma ,In patient ,business - Published
- 2021
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7. Assessing the effect of telephone support on patients with myeloma multiple (MM) in the Catalan oncology institut in Girona
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C.L. Puigmarti, G. Osca, N. Kelleher, Y. Gonzalez, and M. Sole
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medicine.medical_specialty ,Oncology ,business.industry ,Family medicine ,language ,Medicine ,Catalan ,Hematology ,business ,language.human_language - Published
- 2018
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8. Addition of epinephrine to epidural ropivacaine during labour – effects on onset and duration of action, efficacy, and systemic absorption of ropivacaine
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George D. Shorten, N. Kelleher, R. Flynn, and S.A. Leonard
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Random allocation ,Ropivacaine ,business.industry ,Initial dose ,Obstetrics and Gynecology ,Systemic absorption ,Venous Plasma ,Motor block ,Epidural catheter ,Anesthesiology and Pain Medicine ,Epinephrine ,Anesthesia ,medicine ,business ,medicine.drug - Abstract
Addition of epinephrine to epidural anaesthetic solutions may enhance efficacy and duration of analgesia. We postulated that addition of epinephrine 5 μ g · mL −1 to epidural ropivacaine would improve efficacy, decrease systemic absorption and reduce neonatal effects. Twenty-one multiparous women were studied. An initial dose of ropivacaine 30 mg followed by an infusion of ropivacaine 10 mg·h −1 was given via a lumbar epidural catheter. According to random allocation, epinephrine 5 μ g · mL −1 was added to ropivacaine. Ropivacaine concentrations were measured in maternal venous plasma after one hour of infusion and in both umbilical venous and maternal plasma at delivery. Neonatal neurologic and adaptive capacity score (NACS) tests were performed at 2 and 24 h postpartum. All women delivered vaginally. The groups had similar ropivacaine dose requirements, epidural-delivery intervals and satisfaction scores. Bromage scores for motor block were greater in the epinephrine group (2; range: 1–3) than controls (1; range: 0–2). Mean plasma ropivacaine concentrations (±SD) were less in the epinephrine group (0.17 ± 0.05 mg·L −1 , n = 10) than controls (0.31 ± 0.14 mg·L −1 , n = 11; P ≤ 0.05) after one h of infusion but not at delivery. UV ropivacaine concentrations and NACS scores were similar in the two groups. The addition of epinephrine to ropivacaine decreases maternal plasma concentrations after one h of epidural infusion but also increases motor block.
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- 2002
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9. Fungal atopy in adult cystic fibrosis
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N. Kelleher, J L Kiely, Michael Henry, C.P. Bredin, and Deirdre Bennett
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Adult ,Hypersensitivity, Immediate ,Male ,Pulmonary and Respiratory Medicine ,Allergy ,Adolescent ,Population ,Aspergillosis ,Cystic fibrosis ,Diagnosis, Differential ,cystic fibrosis ,Atopy ,fungal atopy ,skin prick test (SPT) ,medicine ,Humans ,Risk factor ,allergic bronchopulmonary mycosis (ABPM) ,education ,Antibodies, Fungal ,Mycosis ,Skin Tests ,education.field_of_study ,business.industry ,Aspergillosis, Allergic Bronchopulmonary ,Immunoglobulin E ,medicine.disease ,Cross-Sectional Studies ,specific serum IgE (RAST) ,Immunology ,Female ,Allergic bronchopulmonary aspergillosis ,business ,Biomarkers - Abstract
This study set out to estimate the prevalence of atopy to a variety of common ubiquitous fungi, including A. fumigatus, in cystic fibrosis (CF), and to evaluate the investigations by which the diagnosis was made. Particular attention was paid to the usefulness of skin testing and immunoassays in detecting which patients had simple fungal atopy, and which patients were at high risk of developing allergic bronchopulmonary mycoses. This cross-sectional study included 21 adult CF patients and 20 matched controls. Serum samples were taken for the measurement of total serum IgE and specific serum IgE to nine common fungi. Immediate hypersensitivity skin prick testing to each of the fungi was also performed. Simple fungal atopy was described in subjects fulfilling the following criteria: total serum IgE100 KU l(-1) with specific radioimmunoassayor = grade 1 to at least one fungus and a positive skin prick test (SPT)or = 3 mm to the same fungus. 'High risk' for developing allergic bronchopulmonary mycosis (ABPM) was described in subjects fulfilling the following criteria: total serum IgE200 KU l(-1) with specific radioimmunoassayor = grade 2 to at least one fungus and a positive skin prick test (SPT)or = 6 mm to the same fungus. The adult CF group had a significantly higher total SPT score (P=0.005) and mean total serum IgE (P0.05) than controls. Forty-three percent of CF patients fulfilled the criteria for fungal atopy to at least a single fungus. Over half this group had an atopic tendency to more than one fungus. Nineteen percent of the CF group were at least 'high risk' of developing ABPM. Skin prick testing is a better marker of fungal atopy and a better predictor of those adult CF patients at higher risk of developing ABPM than specific radioimmunoassay serum testing. There is a high prevalence of fungal atopy in the adult CF population. Total serum IgE and skin prick testing are good predictors of fungal atopy and help predict those at risk of developing ABPM in CF.
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- 2000
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10. Chest radiographic staging in allergic bronchopulmonary aspergillosis: relationship with immunological findings
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J L Kiely, C.P. Bredin, L Spense, Michael Henry, N. Kelleher, and M F Hurley
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Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Pathology ,Allergy ,Aspergillosis ,Gastroenterology ,Leukocyte Count ,Radiologic sign ,Internal medicine ,medicine ,Humans ,Stage (cooking) ,Lung ,Antibodies, Fungal ,Skin Tests ,Asthma ,business.industry ,Aspergillus fumigatus ,Aspergillosis, Allergic Bronchopulmonary ,Immunoglobulin E ,Middle Aged ,Eosinophil ,medicine.disease ,Eosinophils ,Radiography ,medicine.anatomical_structure ,Allergic bronchopulmonary aspergillosis ,business - Abstract
The question of whether a chest radiographic severity staging system could be correlated with standard blood/serum diagnostic indices in allergic bronchopulmonary aspergillosis (ABPA) was addressed in 41 patients. Asthma and positive Aspergillus fumigatus (AF) serology were considered essential diagnostic inclusion criteria. Eosinophil count, serum immunoglobulin (Ig)E and immediate skin hypersensitivity were also tested to grade patients as "definite" or "likely" ABPA. Definite cases had all five of these factors present, whereas likely cases had three or more. Chest radiographs were examined by experienced radiologists blinded to the clinical data. The six-stage radiographic score (0-5) was based on the severity and duration of changes seen: stage 0: normal; stage 1: transient hyperinflation; stage 2: transient minor changes; stage 3: transient major changes; stage 4: permanent minor changes; and stage 5: permanent major changes. Significant positive correlations (p
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- 1998
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11. Epidural ropivacaine hydrochloride during labour: protein binding, placental transfer and neonatal outcome
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J M, Porter, N, Kelleher, R, Flynn, and G D, Shorten
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Adult ,Neurologic Examination ,Infant, Newborn ,Fetal Blood ,Amides ,Analgesia, Epidural ,Pregnancy ,Apgar Score ,Linear Models ,Analgesia, Obstetrical ,Humans ,Female ,Ropivacaine ,Prospective Studies ,Anesthetics, Local ,Maternal-Fetal Exchange ,Glycoproteins ,Protein Binding - Abstract
This study was undertaken: (i) to quantify the effects of labour and epidural analgesia on plasma alpha1-acid glycoprotein concentration, (ii) to examine the effects of changes in plasma alpha1-acid glycoprotein concentration on plasma protein binding and placental transfer of ropivacaine, and (iii) to examine the association between umbilical venous ropivacaine concentration and neurobehavioural function in the neonate. Multiparous patients undergoing induction of labour received a continuous epidural infusion of 0.1% ropivacaine following an epidural bolus. A significant association was demonstrated between maternal plasma alpha1-acid glycoprotein concentration and 1/free fraction of ropivacaine 60 min after starting ropivacaine administration (r(2) = 0.77) but not at delivery. No significant correlation was demonstrable between maternal unbound ropivacaine concentration and either neonatal (cord) ropivacaine concentration or UV/MV (a measure of placental transfer). Thirty minutes after delivery, 9/10 neonates had neurological and adaptive capacity scores35, whereas only three infants had scores35 at 2 h. All scores exceeded 35 16 h after delivery. No association between mean (SD) umbilical venous ropivacaine concentration [0.09 (0.08) mg x l(-1)] and neurological and adaptive capacity scores was demonstrated.
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- 2001
12. Irish Thoracic Society: Proceeds of Annual Scientific Meeting held Friday & Saturday 8th & 9th November, 1996
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R. Coakley, S. O’Neill, P. Glynn, G. A. Finlay, K. J. Russell, K. McMahon, E. M. D’Arcy, J. B. Masterson, M. X. Fitzgerald, C. M. O’Connor, L. R. O’Driscoll, L. P. A. McGarvey, P. Forsythe, L. G. Heaney, J. MacMahon, M. Ennis, C. Leonard, V. Tormey, C. M. Burke, L. W. Poulter, V. M. Keatings, M. X. FitzGerald, P. J. Barnes, H. R. Harty, D. R. Corfield, L. Adams, R. M. Schwartzstein, J. F. Kiely, A. Buckley, P. Shiels, P. C. Deegan, B. Maurer, W. T. McNicholas, K. A. Dunlop, B. Martin, M. Riley, M. D. Shields, I. Kilgallen, N. G. McElvaney, D. Cervantes-Laurean, N. Wehr, K. Gabriele, W. Robinson, J. Moss, R. L. Levine, V. Urbach, D. Walsh, B. Harvey, M. C. McElroy, J-F. Pittet, L. Allen, J. Wiener-Kroonish, L. G. Dobbs, D. M. O’Donnell, K. J. McMahon, C. O’Connor, P. McGuirk, B. Mahon, F. Griffin, K. H. G. Mills, R. Murphy, F. Brijker, E. Mulloy, J. W. Cohen Tervaert, J. Walshe, R. C. Lowry, D. R. T. Shepherd, L. A. Gamble, C. Carton, R. Memon, D. Winter, A. Chan, T. Aherne, P. O’Reilly, J. A. Harbison, S. O’Callaghan, M. Keane, M. McKenna, S. Woods, A. Lamon, J. Faul, M. Murphy, J. Porszasz, M. P. K. J. Engelen, B. Brundage, K. Wasserman, M. Sweeney, R. G. O’Regan, P. McLoughlin, V. Honner, B. Sinnott, D. S. McGrath, J. Kiely, B. Cryan, C. P. Bredin, C. Shortt, M. Stack, N. Kelleher, J. McRedmond, N. Mulkerji, V. Keatings, G. M. Boylan, L. J. M. Cross, S. Davern, T. J. McDonnell, J. L. Kiely, G. Lawless, S. Cunningham, J. Lordan, L. Clancy, P. Manning, P. Plunkett, D. Donaghy, F. Ben Musbah, B. G. Loftus, R. Rutherford, S. N. E. Watson, J. J. Gilmartin, M. Henry, G. Mullins, and N. Brennan
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medicine.medical_specialty ,Irish ,business.industry ,Ophthalmology ,language ,ComputingMethodologies_DOCUMENTANDTEXTPROCESSING ,Library science ,Medicine ,General Medicine ,business ,language.human_language - Abstract
The abstract is included in the text.
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- 1998
13. E029 Losartan (LOS) and uric acid (UA) in chronic renal failure and end-stage renal disease (ESRD)
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Domenic A. Sica, Todd W.B. Gehr, N. Kelleher, and Itaf Fakhry
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medicine.medical_specialty ,chemistry.chemical_compound ,Losartan ,chemistry ,business.industry ,Internal Medicine ,Urology ,medicine ,Chronic renal failure ,Uric acid ,business ,End stage renal disease ,medicine.drug - Published
- 1998
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14. C008 Cholesterol (CHOL) exacerbates hypertension in puromycin (P) induced focal glomerulosclerosis (FGS)
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Domenic A. Sica, N. Kelleher, Shobha Ghosh, C. Sica, Itaf Fakhry, Todd W.B. Gehr, W. Irving, and Siddhartha S. Ghosh
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chemistry.chemical_compound ,medicine.medical_specialty ,Endocrinology ,chemistry ,Focal glomerulosclerosis ,Biochemistry ,Cholesterol ,business.industry ,Puromycin ,Internal medicine ,Internal Medicine ,medicine ,business - Published
- 1998
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15. Temporal regulation of gene expression through integration of p53 dynamics and modifications.
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Lu D, Faizi M, Drown B, Simerzin A, François J, Bradshaw G, Kelleher N, Jambhekar A, Gunawardena J, and Lahav G
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- Humans, Acetylation, DNA Repair, DNA Breaks, Double-Stranded, DNA Damage, Cell Line, Tumor, Tumor Suppressor Protein p53 metabolism, Tumor Suppressor Protein p53 genetics, Protein Processing, Post-Translational, Gene Expression Regulation
- Abstract
The master regulator of the DNA damage response, the transcription factor p53, orchestrates multiple downstream responses and coordinates repair processes. In response to double-strand DNA breaks, p53 exhibits pulses of expression, but how it achieves temporal coordination of downstream responses remains unclear. Here, we show that p53's posttranslational modification state is altered between its first and second pulses of expression. We show that acetylations at two sites, K373 and K382, were reduced in the second pulse, and these acetylations differentially affected p53 target genes, resulting in changes in gene expression programs over time. This interplay between dynamics and modification may offer a strategy for cellular hubs like p53 to temporally organize multiple processes in individual cells.
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- 2024
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16. Testicular large B-cell lymphoma is genetically similar to PCNSL and distinct from nodal DLBCL.
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Rivas-Delgado A, López C, Clot G, Nadeu F, Grau M, Frigola G, Bosch-Schips J, Radke J, Ishaque N, Alcoceba M, Tapia G, Luizaga L, Barcena C, Kelleher N, Villamor N, Baumann T, Muntañola A, Sancho-Cia JM, García-Sancho AM, Gonzalez-Barca E, Matutes E, Brito JA, Karube K, Salaverria I, Enjuanes A, Wiemann S, Heppner FL, Siebert R, Climent F, Campo E, Giné E, López-Guillermo A, and Beà S
- Abstract
Testicular large B-cell lymphoma (TLBCL) is an infrequent and aggressive lymphoma arising in an immune-privileged site and has recently been recognized as a distinct entity from diffuse large B-cell lymphoma (DLBCL). We describe the genetic features of TLBCL and compare them with published series of nodal DLBCL and primary large B-cell lymphomas of the CNS (PCNSL). We collected 61 patients with TLBCL. We performed targeted next-generation sequencing, copy number arrays, and fluorescent in situ hybridization to assess chromosomal rearrangements in 40 cases with available material. Seventy percent of the cases showed localized stages. BCL6 rearrangements were detected in 36% of cases, and no concomitant BCL2 and MYC rearrangements were found. TLBCL had fewer copy number alterations ( p < 0.04) but more somatic variants ( p < 0.02) than nodal DLBCL and had more frequent 18q21.32-q23 ( BCL2 ) gains and 6q and 9p21.3 ( CDKN2A/B ) deletions. PIM1 , MYD88
L265P , CD79B , TBL1XR1 , MEF2B , CIITA , EP300, and ETV6 mutations were more frequent in TLBCL, and BCL10 mutations in nodal DLBCL. There were no major genetic differences between TLBCL and PCNSL. Localized or disseminated TLBCL displayed similar genomic profiles. Using LymphGen, the majority of cases were classified as MCD. However, we observed a subgroup of patients classified as BN2, both in localized and disseminated TLBCL, suggesting a degree of genetic heterogeneity in the TLBCL genetic profile. TLBCL has a distinctive genetic profile similar to PCNSL, supporting its recognition as a separate entity from DLBCL and might provide information to devise targeted therapeutic approaches., Competing Interests: Ferran Nadeu has received honoraria from Janssen, AbbVie, AstraZeneca, and SOPHiA GENETICS for speaking at educational activities; has received research support from Gilead; and has licensed the use of the protected IgCaller algorithm to Diagnóstica Longwood. Tycho Baumann has received consulting fees or honoraria from Janssen, Roche, Novartis, Merck, Gilead/Kite, Incyte, Lilly, Abbvie, AstraZeneca, and BeiGene. Alejandro Martin García‐Sancho has received consulting fees or honoraria from Janssen, Roche, BMS/Celgene, Kyowa Kirin, Clinigen, EUSAPharma, Novartis, Gilead/Kite, Incyte, Lilly, Takeda, ADC Therapeutics America, Miltenyi, Ideogen, Abbvie, and BeiGene. Elías Campo has been a consultant for GenMab, and Takeda; has received research support from AstraZeneca; received honoraria from Janssen, EUSPharma, Takeda, and Roche for speaking at educational activities; and is an inventor on a Lymphoma and Leukemia Molecular Profiling Project patent “Method for subtyping lymphoma subtypes by means of expression profiling” (PCT/US2014/64161) and a bioinformatic tool (IgCaller) licensed to Diagnostic Longwood. Eva Giné has received honoraria or consulting fees from Gilead, Kite Pharma, Janssen, Genmab, Miltenyi, and Lilly; has received research support from Janssen and travel expenses from Gilead and Kite Pharma. Armando López Guillermo served on the advisory board of Roche, Celgene, Novartis, and Gilead/Kite, received grants from Celgene and Gilead/Kite, and travel expenses from Kite/Gilead. The remaining authors declare no competing interests., (© 2024 The Author(s). HemaSphere published by John Wiley & Sons Ltd on behalf of European Hematology Association.)- Published
- 2024
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17. Histone oxidation as a new mechanism of metabolic control over gene expression.
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Gantner BN, Palma FR, Kayzuka C, Lacchini R, Foltz DR, Backman V, Kelleher N, Shilatifard A, and Bonini MG
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- Humans, Animals, Chromatin Assembly and Disassembly genetics, Chromatin genetics, Chromatin metabolism, Histones metabolism, Histones genetics, Oxidation-Reduction, Protein Processing, Post-Translational genetics, Gene Expression Regulation genetics, Reactive Oxygen Species metabolism
- Abstract
The emergence of aerobic respiration created unprecedented bioenergetic advantages, while imposing the need to protect critical genetic information from reactive byproducts of oxidative metabolism (i.e., reactive oxygen species, ROS). The evolution of histone proteins fulfilled the need to shield DNA from these potentially damaging toxins, while providing the means to compact and structure massive eukaryotic genomes. To date, several metabolism-linked histone post-translational modifications (PTMs) have been shown to regulate chromatin structure and gene expression. However, whether and how PTMs enacted by metabolically produced ROS regulate adaptive chromatin remodeling remain relatively unexplored. Here, we review novel mechanistic insights into the interactions of ROS with histones and their consequences for the control of gene expression regulation, cellular plasticity, and behavior., Competing Interests: Declaration of interests N.K. is a consultant for Thermo Fisher Scientific on proteomics and biological mass spectrometry applications., (Copyright © 2024 Elsevier Ltd. All rights reserved.)
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- 2024
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18. Top-down mass spectrometry of native proteoforms and their complexes: A community study.
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Lermyte F, Habeck T, Brown K, Des Soye B, Lantz C, Zhou M, Alam N, Hossain MA, Jung W, Keener J, Volny M, Wilson J, Ying Y, Agar J, Danis P, Ge Y, Kelleher N, Li H, Loo J, Marty M, Pasa-Tolic L, and Sandoval W
- Abstract
The combination of native electrospray ionisation with top-down fragmentation in mass spectrometry allows simultaneous determination of the stoichiometry of noncovalent complexes and identification of their component proteoforms and co-factors. While this approach is powerful, both native mass spectrometry and top-down mass spectrometry are not yet well standardised, and only a limited number of laboratories regularly carry out this type of research. To address this challenge, the Consortium for Top-Down Proteomics (CTDP) initiated a study to develop and test protocols for native mass spectrometry combined with top-down fragmentation of proteins and protein complexes across eleven instruments in nine laboratories. The outcomes are summarised in this report to provide robust benchmarks and a valuable entry point for the scientific community., Competing Interests: Competing interests N.L.K. is involved in entrepreneurial activities in top-down proteomics and consults for Thermo Fisher Scientific. P.O.D. is the founder and principal of Eastwoods Consulting, providing business advisory services to life science companies.
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- 2023
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19. Native top-down proteomics reveals EGFR-ERα signaling crosstalk in breast cancer cells dissociates NUTF2 dimers to modulate ERα signaling and cell growth.
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Yates J 3rd, Gomes F, Durbin K, Schauer K, Nwachukwu J, Russo R, Njeri J, Saviola A, McClatchy D, Diedrich J, Garrett P, Papa A, Ciolacu I, Kelleher N, and Nettles K
- Abstract
Oligomerization of proteins and their modified forms (proteoforms) produces functional protein complexes
1,2 . Complexoforms are complexes that consist of the same set of proteins with different proteoforms3 . The ability to characterize these assemblies within cells is critical to understanding the molecular mechanisms involved in disease and to designing effective drugs. An outstanding biological question is how proteoforms drive function and oligomerization of complexoforms. However, tools to define endogenous proteoform-proteoform/ligand interactions are scarce4 . Here, we present a native top-down proteomics (nTDP) strategy that combines size-exclusion chromatography, nano liquid-chromatography in direct infusion mode, field asymmetric ion mobility spectrometry, and multistage mass spectrometry to identify protein assemblies (≤70 kDa) in breast cancer cells and in cells that overexpress EGFR, a resistance model of estrogen receptor-α (ER-α) targeted therapies. By identifying ~104 complexoforms from 17 protein complexes, our nTDP approach revealed several molecular features of the breast cancer proteome, including EGFR-induced dissociation of nuclear transport factor 2 (NUTF2) assemblies that modulate ER activity. Our findings show that the K4 and K55 posttranslational modification sites discovered with nTDP differentially impact the effects of NUTF2 on the inhibition of the ER signaling pathway. By characterizing endogenous proteoform-proteoform/ligand interactions, we reveal the molecular diversity of complexoforms, which allows us to propose a model for ER drug discovery in the context of designing effective inhibitors to selectively bind and disrupt the actions of targeted ER complexoforms., Competing Interests: Competing Interests: KRD and NLK are involved in the commercialization of top-down proteomics software including ProSight Native. The other authors have no competing interests to disclose.- Published
- 2023
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20. Impact of pre- and/or post-autologous stem cell transplantation exposure to brentuximab vedotin on survival outcomes in patients with high-risk Hodgkin lymphoma.
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Martínez C, de Haro ME, Romero S, Gutiérrez A, Domingo-Domènech E, González-Rodríguez AP, Zeberio I, Martínez-Badas MP, Rodríguez-Izquierdo A, Carpio C, Bastos-Oreiro M, Hernández-Rivas JÁ, Vallansot R, Kelleher N, Díaz-Gálvez FJ, Torrado T, Pereira A, and García-Sanz R
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- Humans, Brentuximab Vedotin therapeutic use, Transplantation, Autologous, Neoplasm Recurrence, Local drug therapy, Antineoplastic Combined Chemotherapy Protocols therapeutic use, Stem Cell Transplantation, Hodgkin Disease drug therapy, Hodgkin Disease pathology, Hematopoietic Stem Cell Transplantation, Immunoconjugates
- Abstract
The AETHERA trial demonstrated that brentuximab vedotin (BV) consolidation after autologous stem cell transplantation (ASCT) in patients with Hodgkin lymphoma (HL) at high risk of relapse/progression increases progression-free survival (PFS). Patients previously exposed to BV were excluded from that trial. However, BV alone or in combination with chemotherapy is frequently used as front-line treatment and/or pre-ASCT salvage therapy. We analyzed data from 156 patients with high-risk HL who underwent ASCT with (BV-CON, n = 62) or without (non-BV, n = 94) BV consolidation. Fifty-seven patients received BV-based salvage regimens before ASCT. The 3-year overall survival and PFS for all patients were 91.6% and 70.0%, respectively. Multivariate analysis showed that BV-CON was associated with better PFS (HR 0.39, p = 0.01), whereas positive PET at transplant leaded to worse PFS (HR 2.71, p = 0.001). BV-CON improved PFS in PET-positive patients (72.2% vs. 43.0%, p = 0.05), with a beneficial trend observed in PET negative (88.8% vs. 75.2%, p = 0.09). BV-CON patients with or without BV exposure pre-ASCT had a significantly better PFS than non-BV with or without BV pretransplant treatment (HR 0.36, p = 0.004). The efficacy of real-life BV consolidation therapy was similar to that in the AETHERA trial. This therapeutic strategy improves survival independently of BV exposure prior to ASCT., (© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)
- Published
- 2023
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21. Chromatin occupancy and epigenetic analysis reveal new insights into the function of the GATA1 N terminus in erythropoiesis.
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Ling T, Birger Y, Stankiewicz MJ, Ben-Haim N, Kalisky T, Rein A, Kugler E, Chen W, Fu C, Zhang K, Patel H, Sikora JW, Goo YA, Kelleher N, Zou L, Izraeli S, and Crispino JD
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- Anemia, Diamond-Blackfan genetics, Anemia, Diamond-Blackfan physiopathology, Animals, Chromatin genetics, Epigenesis, Genetic genetics, Mice, Mice, Mutant Strains, Protein Isoforms, Erythropoiesis genetics, GATA1 Transcription Factor genetics
- Abstract
Mutations in GATA1, which lead to expression of the GATA1s isoform that lacks the GATA1 N terminus, are seen in patients with Diamond-Blackfan anemia (DBA). In our efforts to better understand the connection between GATA1s and DBA, we comprehensively studied erythropoiesis in Gata1s mice. Defects in yolks sac and fetal liver hematopoiesis included impaired terminal maturation and reduced numbers of erythroid progenitors. RNA-sequencing revealed that both erythroid and megakaryocytic gene expression patterns were altered by the loss of the N terminus, including aberrant upregulation of Gata2 and Runx1. Dysregulation of global H3K27 methylation was found in the erythroid progenitors upon loss of N terminus of GATA1. Chromatin-binding assays revealed that, despite similar occupancy of GATA1 and GATA1s, there was a striking reduction of H3K27me3 at regulatory elements of the Gata2 and Runx1 genes. Consistent with the observation that overexpression of GATA2 has been reported to impair erythropoiesis, we found that haploinsufficiency of Gata2 rescued the erythroid defects of Gata1s fetuses. Together, our integrated genomic analysis of transcriptomic and epigenetic signatures reveals that, Gata1 mice provide novel insights into the role of the N terminus of GATA1 in transcriptional regulation and red blood cell maturation which may potentially be useful for DBA patients., (© 2019 by The American Society of Hematology.)
- Published
- 2019
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22. Mo-, V-, and Fe-Nitrogenases Use a Universal Eight-Electron Reductive-Elimination Mechanism To Achieve N 2 Reduction.
- Author
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Harris DF, Lukoyanov DA, Kallas H, Trncik C, Yang ZY, Compton P, Kelleher N, Einsle O, Dean DR, Hoffman BM, and Seefeldt LC
- Subjects
- Azotobacter vinelandii enzymology, Electrons, Iron chemistry, Molybdenum chemistry, Nitrogen chemistry, Nitrogenase chemistry, Oxidation-Reduction, Iron metabolism, Molybdenum metabolism, Nitrogen metabolism, Nitrogenase metabolism
- Abstract
Three genetically distinct, but structurally similar, isozymes of nitrogenase catalyze biological N
2 reduction to 2NH3 : Mo-, V-, and Fe-nitrogenase, named respectively for the metal ( M ) in their active site metallocofactors (metal-ion composition, M Fe7 ). Studies of the Mo-enzyme have revealed key aspects of its mechanism for N2 binding and reduction. Central to this mechanism is accumulation of four electrons and protons on its active site metallocofactor, called FeMo-co, as metal bound hydrides to generate the key E4 (4H) ("Janus") state. N2 binding/reduction in this state is coupled to reductive elimination ( re ) of the two hydrides as H2 , the forward direction of a reductive-elimination/oxidative-addition ( re/oa ) equilibrium. A recent study demonstrated that Fe-nitrogenase follows the same re/oa mechanism, as particularly evidenced by HD formation during turnover under N2 /D2 . Kinetic analysis revealed that Mo- and Fe-nitrogenases show similar rate constants for hydrogenase-like H2 formation by hydride protonolysis ( kHP with N2 re ). We now report that V-nitrogenase also exhibits HD formation during N2 binding/reduction ( kre inhibition of N2 /D2 equilibrium as a universal mechanism for N2 inhibition of N2 reduction), thereby establishing the re/oa equilibrium as a universal mechanism for N2 binding and activation among the three nitrogenases. Kinetic analysis further reveals that differences in catalytic efficiencies do not stem from significant differences in the rate constant ( kHP coupled to N2 production by the hydrogenase-like side reaction but directly arise from the differences in the rate constant ( kre ) for the re of H2 coupled to N2 binding/reduction, which decreases in the order Mo > V > Fe.- Published
- 2019
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23. Population-based incidence of lymphoid neoplasms: Twenty years of epidemiological data in the Girona province, Spain.
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Solans M, Fàbrega A, Morea D, Auñon-Sanz C, Granada I, Roncero JM, Blanco A, Kelleher N, Buch J, Saez M, and Marcos-Gragera R
- Subjects
- Adolescent, Adult, Aged, Female, Humans, Incidence, Male, Middle Aged, Spain epidemiology, Young Adult, Lymphoma epidemiology, Registries
- Abstract
Background: The aim of this study was to describe incidence patterns of lymphoid neoplasms in the Girona province (Spain) (1996-2015), and to predict the number of cases in Spain during 2020., Methods: Data were extracted from the Girona cancer registry. Incident cases were classified using the ICD-O-3, third revision, and grouped according to the WHO 2008 classification scheme. Age-adjusted incidence rates to the European standard population (ASRE) were estimated and incidence trends were modeled using Joinpoint., Results: 4367 lymphoid neoplasms were diagnosed in the Girona province. The ASRE for overall lymphoma was 37.1 (95% CI: 36.0; 38.2), with a marked male predominance in almost all subtypes. During 1996-2015, incidence trends remained stable for broader lymphoma categories. According to our predictions, 17,950 new cases of LNs will be diagnosed in Spain in 2020., Conclusions: This 'real-world' data will provide valuable information to better inform etiological hypotheses and plan future health-care services., (Copyright © 2018 Elsevier Ltd. All rights reserved.)
- Published
- 2019
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24. Mechanism of N 2 Reduction Catalyzed by Fe-Nitrogenase Involves Reductive Elimination of H 2 .
- Author
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Harris DF, Lukoyanov DA, Shaw S, Compton P, Tokmina-Lukaszewska M, Bothner B, Kelleher N, Dean DR, Hoffman BM, and Seefeldt LC
- Subjects
- Adenosine Triphosphate metabolism, Catalysis, Coenzymes metabolism, Iron analysis, Models, Chemical, Molybdenum analysis, Oxidation-Reduction, Protein Subunits, Recombinant Proteins metabolism, Vanadium analysis, Azotobacter vinelandii enzymology, Bacterial Proteins metabolism, Hydrogen metabolism, Nitrogen metabolism, Oxidoreductases metabolism
- Abstract
Of the three forms of nitrogenase (Mo-nitrogenase, V-nitrogenase, and Fe-nitrogenase), Fe-nitrogenase has the poorest ratio of N
2 reduction relative to H2 evolution. Recent work on the Mo-nitrogenase has revealed that reductive elimination of two bridging Fe-H-Fe hydrides on the active site FeMo-cofactor to yield H2 is a key feature in the N2 reduction mechanism. The N2 reduction mechanism for the Fe-nitrogenase active site FeFe-cofactor was unknown. Here, we have purified both component proteins of the Fe-nitrogenase system, the electron-delivery Fe protein (AnfH) plus the catalytic FeFe protein (AnfDGK), and established its mechanism of N2 reduction. Inductively coupled plasma optical emission spectroscopy and mass spectrometry show that the FeFe protein component does not contain significant amounts of Mo or V, thus ruling out a requirement of these metals for N2 reduction. The fully functioning Fe-nitrogenase system was found to have specific activities for N2 reduction (1 atm) of 181 ± 5 nmol NH3 min-1 mg-1 FeFe protein, for proton reduction (in the absence of N2 ) of 1085 ± 41 nmol H2 min-1 mg-1 FeFe protein, and for acetylene reduction (0.3 atm) of 306 ± 3 nmol C2 H4 min-1 mg-1 FeFe protein. Under turnover conditions, N2 reduction is inhibited by H2 and the enzyme catalyzes the formation of HD when presented with N2 and D2 . These observations are explained by the accumulation of four reducing equivalents as two metal-bound hydrides and two protons at the FeFe-cofactor, with activation for N2 reduction occurring by reductive elimination of H2 .- Published
- 2018
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25. UTX/KDM6A Loss Enhances the Malignant Phenotype of Multiple Myeloma and Sensitizes Cells to EZH2 inhibition.
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Ezponda T, Dupéré-Richer D, Will CM, Small EC, Varghese N, Patel T, Nabet B, Popovic R, Oyer J, Bulic M, Zheng Y, Huang X, Shah MY, Maji S, Riva A, Occhionorelli M, Tonon G, Kelleher N, Keats J, and Licht JD
- Subjects
- Animals, Carcinogenesis drug effects, Carcinogenesis genetics, Carcinogenesis pathology, Cell Adhesion drug effects, Cell Adhesion genetics, Cell Dedifferentiation drug effects, Cell Dedifferentiation genetics, Cell Line, Tumor, Cell Proliferation drug effects, Cell Proliferation genetics, Cell Survival drug effects, Cell Survival genetics, Clone Cells, Enhancer of Zeste Homolog 2 Protein metabolism, Gene Expression Profiling, Gene Expression Regulation, Neoplastic drug effects, Histone Demethylases metabolism, Histones metabolism, Indazoles pharmacology, Interferon Regulatory Factors metabolism, Lysine metabolism, Methylation, Mice, Mice, Inbred NOD, Mice, SCID, Multiple Myeloma genetics, Mutation genetics, Nuclear Proteins metabolism, Phenotype, Pyridones pharmacology, Transcription, Genetic drug effects, Enhancer of Zeste Homolog 2 Protein antagonists & inhibitors, Histone Demethylases deficiency, Multiple Myeloma pathology, Nuclear Proteins deficiency
- Abstract
Loss or inactivation of the histone H3K27 demethylase UTX occurs in several malignancies, including multiple myeloma (MM). Using an isogenic cell system, we found that loss of UTX leads to deactivation of gene expression ultimately promoting the proliferation, clonogenicity, adhesion, and tumorigenicity of MM cells. Moreover, UTX mutant cells showed increased in vitro and in vivo sensitivity to inhibition of EZH2, a histone methyltransferase that generates H3K27me3. Such sensitivity was related to a decrease in the levels of IRF4 and c-MYC and an activation of repressors of IRF4 characteristic of germinal center B cells such as BCL6 and IRF1. Rebalance of H3K27me3 levels at specific genes through EZH2 inhibitors may be a therapeutic strategy in MM cases harboring UTX mutations., (Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2017
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26. Chromatographic efficiency and selectivity in top-down proteomics of histones.
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Zhou Y, Zhang X, Fornelli L, Compton PD, Kelleher N, and Wirth MJ
- Subjects
- Animals, Cattle, Mass Spectrometry, Porosity, Ultraviolet Rays, Chromatography, Reverse-Phase methods, Histones analysis, Histones chemistry, Proteomics methods
- Abstract
Histones are involved in epigenetic control of a wide variety of cellular processes through their multiple post-translational modifications. Their strongly cationic nature makes them challenging to separate with reversed-phase liquid chromatography coupled to mass spectrometry (RPLC-MS), where trifluoroacetic acid is avoided due to adduct formation. Columns with higher resolution are needed. In this work, RPLC-MS is performed on a histone sample using difluoroacetic acid and a 20-min gradient. Columns with C18 surfaces are compared for two different types of particle morphologies: 1) fully porous particles of 5μm in diameter, 2) superficially porous particles of 3μm in diameter with a shell of 0.2μm. The resolution for the histone separation is better for the latter column, but only when the modifier is trifluoroacetic acid, which is used with UV absorbance detection. When difluoroacetic acid is used for LCMS, the peaks broaden enough to erase the advantage in efficiency for the superficially porous particles. The fully porous and superficially porous cases show similar performance in RPLC-MS, with slightly higher resolution for the fully porous particles. The expected advantage of the shorter diffusion distances for the superficially porous particles is shown to be outweighed by the lower selectivity of its bonded phase., (Copyright © 2017 Elsevier B.V. All rights reserved.)
- Published
- 2017
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27. Incidence, clinical and biological characteristics and outcome of secondary acute lymphoblastic leukemia after solid organ or hematologic malignancy.
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Kelleher N, Gallardo D, González-Campos J, Hernández-Rivas JM, Montesinos P, Sarrá J, Gil C, Barba P, Guàrdia R, Brunet S, Bernal T, Martínez MP, Abella E, Bermúdez A, Sánchez-Delgado M, Antònia C, Gayoso J, Calbacho M, and Ribera JM
- Subjects
- Adolescent, Adult, Aged, Biomarkers, Chromosome Aberrations, Female, Humans, Incidence, Male, Middle Aged, Neoplasms, Second Primary genetics, Neoplasms, Second Primary mortality, Precursor Cell Lymphoblastic Leukemia-Lymphoma genetics, Precursor Cell Lymphoblastic Leukemia-Lymphoma mortality, Prognosis, Recurrence, Young Adult, Hematologic Neoplasms epidemiology, Neoplasms epidemiology, Neoplasms, Second Primary diagnosis, Neoplasms, Second Primary epidemiology, Precursor Cell Lymphoblastic Leukemia-Lymphoma diagnosis, Precursor Cell Lymphoblastic Leukemia-Lymphoma epidemiology
- Abstract
Acute lymphoblastic leukemia (ALL) following solid organ or hematologic malignancy (secondary ALL, s-ALL) is not well characterized. We analyzed the characteristics and outcome of patients with s-ALL and compared them with those of patients with de novo- ALL. Of 448 patients, 24 (5%) had previous neoplasia. Sixteen patients had received previous cytotoxic therapy (therapy-associated ALL, t-ALL), and eight had not (antecedent-malignancy ALL, am-ALL). Except for more advanced age in patients with s-ALL, no statistically significant differences were observed in WBC count, CNS involvement, immunophenotype or cytogenetics between the groups, nor in complete remission (t-ALL: 94%; am-ALL: 75%; de novo-ALL: 85%), 3-year remission duration (58%; 50%; 72%), overall survival (71%; 38%; 60%) or event-free survival (53%, 38%; 53%). Our study did not show poor clinical or cytogenetic features or inferior outcome in ALL patients with antecedent neoplastic disease, irrespective of the type of treatment received for the neoplasia.
- Published
- 2016
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28. Kinetics of the CTLA-4 isoforms expression after T-lymphocyte activation and role of the promoter polymorphisms on CTLA-4 gene transcription.
- Author
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Pérez-García A, Osca G, Bosch-Vizcaya A, Kelleher N, Santos NY, Rodríguez R, González Y, Roncero JM, Coll R, Serrando M, Lloveras N, Tuset E, and Gallardo D
- Subjects
- CTLA-4 Antigen immunology, Cells, Cultured, Cloning, Molecular, Enzyme-Linked Immunosorbent Assay, Gene Expression Regulation genetics, Genotype, Humans, Lymphocyte Activation, Polymorphism, Genetic, Promoter Regions, Genetic genetics, Protein Isoforms immunology, Spain, Transgenes genetics, CTLA-4 Antigen metabolism, Protein Isoforms metabolism, T-Lymphocytes immunology
- Abstract
Cytotoxic T lymphocyte antigen 4 (CTLA-4) plays a key inhibitory role during T lymphocyte activation. The CTLA4 gene is translated into two proteic isoforms: a full-length protein (flCTLA-4) and a soluble counterpart. We explored the expression of both isoforms on healthy subjects. Whereas in non-stimulated cells the flCTLA-4 isoform is predominant, after stimulation the expression of the soluble form rapidly increases, reaching its maximum 24h after and falling again to the basal levels 72 h after stimulation. In contrast, the flCTLA-4 mRNA levels increase is slower, reaching the maximum level 72 h after stimulation. The presence of the T allele in the promoter positions -1722 and -318 is associated with an increased transcriptional activity and this effect seems to be synergic. We conclude that the kinetics of CTLA-4 isoform expression are sequential, and that the promoter polymorphisms -1722(C/T) and -318(C/T) are involved in the control of the CTLA4 transcription., (Copyright © 2013 American Society for Histocompatibility and Immunogenetics. Published by Elsevier Inc. All rights reserved.)
- Published
- 2013
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29. EZH2 is required for germinal center formation and somatic EZH2 mutations promote lymphoid transformation.
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Béguelin W, Popovic R, Teater M, Jiang Y, Bunting KL, Rosen M, Shen H, Yang SN, Wang L, Ezponda T, Martinez-Garcia E, Zhang H, Zheng Y, Verma SK, McCabe MT, Ott HM, Van Aller GS, Kruger RG, Liu Y, McHugh CF, Scott DW, Chung YR, Kelleher N, Shaknovich R, Creasy CL, Gascoyne RD, Wong KK, Cerchietti L, Levine RL, Abdel-Wahab O, Licht JD, Elemento O, and Melnick AM
- Subjects
- Animals, Cell Differentiation, Cell Proliferation, Enhancer of Zeste Homolog 2 Protein, Gene Deletion, Gene Expression Regulation, Neoplastic, Germinal Center drug effects, Histones metabolism, Methylation, Mice, Polycomb Repressive Complex 2 genetics, Polycomb Repressive Complex 2 metabolism, Promoter Regions, Genetic, Proto-Oncogene Proteins c-bcl-2 metabolism, Proto-Oncogene Proteins c-bcl-2 physiology, B-Lymphocytes metabolism, Cell Transformation, Neoplastic genetics, Germinal Center metabolism, Mutation, Polycomb Repressive Complex 2 physiology
- Abstract
The EZH2 histone methyltransferase is highly expressed in germinal center (GC) B cells and targeted by somatic mutations in B cell lymphomas. Here, we find that EZH2 deletion or pharmacologic inhibition suppresses GC formation and functions. EZH2 represses proliferation checkpoint genes and helps establish bivalent chromatin domains at key regulatory loci to transiently suppress GC B cell differentiation. Somatic mutations reinforce these physiological effects through enhanced silencing of EZH2 targets. Conditional expression of mutant EZH2 in mice induces GC hyperplasia and accelerated lymphomagenesis in cooperation with BCL2. GC B cell (GCB)-type diffuse large B cell lymphomas (DLBCLs) are mostly addicted to EZH2 but not the more differentiated activated B cell (ABC)-type DLBCLs, thus clarifying the therapeutic scope of EZH2 targeting., (Copyright © 2013 Elsevier Inc. All rights reserved.)
- Published
- 2013
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30. Nuclear localization of the Saccharomyces cerevisiae ribonucleotide reductase small subunit requires a karyopherin and a WD40 repeat protein.
- Author
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Zhang Z, An X, Yang K, Perlstein DL, Hicks L, Kelleher N, Stubbe J, and Huang M
- Subjects
- Catalysis, Cell Nucleus metabolism, Chromatin Immunoprecipitation, Cytoplasm metabolism, DNA Damage, DNA Replication, Dimerization, Electrophoresis, Polyacrylamide Gel, Fungal Proteins chemistry, Gene Deletion, Gene Expression Regulation, Fungal, Genes, Fungal, Green Fluorescent Proteins chemistry, Karyopherins metabolism, Models, Biological, Mutation, Plasmids metabolism, Protein Binding, Recombinant Fusion Proteins chemistry, Repressor Proteins chemistry, Ribonucleotide Reductases chemistry, Saccharomyces cerevisiae Proteins chemistry, Saccharomyces cerevisiae Proteins metabolism, Transcription Factors chemistry, beta Karyopherins metabolism, Cell Nucleus enzymology, Karyopherins physiology, Repressor Proteins physiology, Ribonucleotide Reductases biosynthesis, Saccharomyces cerevisiae enzymology, Saccharomyces cerevisiae Proteins physiology, Transcription Factors physiology, beta Karyopherins physiology
- Abstract
Ribonucleotide reductase (RNR) catalyzes the reduction of ribonucleotides to the corresponding deoxyribonucleotides and is an essential enzyme for DNA replication and repair. Cells have evolved intricate mechanisms to regulate RNR activity to ensure high fidelity of DNA replication during normal cell-cycle progression and of DNA repair upon genotoxic stress. The RNR holoenzyme is composed of a large subunit R1 (alpha, oligomeric state unknown) and a small subunit R2 (beta(2)). R1 binds substrates and allosteric effectors; R2 contains a diferric-tyrosyl radical [(Fe)(2)-Y.] cofactor that is required for catalysis. In Saccharomyces cerevisiae, R1 is predominantly localized in the cytoplasm, whereas R2, which is a heterodimer (betabeta'), is predominantly in the nucleus. When cells encounter DNA damage or stress during replication, betabeta' is redistributed from the nucleus to the cytoplasm in a checkpoint-dependent manner, resulting in the colocalization of R1 and R2. We have identified two proteins that have an important role in betabeta' nuclear localization: the importin beta homolog Kap122 and the WD40 repeat protein Wtm1. Deletion of either WTM1 or KAP122 leads to loss of betabeta' nuclear localization. Wtm1 and its paralog Wtm2 are both nuclear proteins that are in the same protein complex with betabeta'. Wtm1 also interacts with Kap122 in vivo and requires Kap122 for its nuclear localization. Our results suggest that Wtm1 acts either as an adaptor to facilitate nuclear import of betabeta' by Kap122 or as an anchor to retain betabeta' in the nucleus.
- Published
- 2006
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31. Waldenstrom's disease and cardiopulmonary bypass: a case report.
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Sweeting CA, Kelleher N, Mahmood N, Unsworth-White J, Weatherall M, and Webb G
- Subjects
- Hemofiltration, Humans, Male, Middle Aged, Blood Viscosity, Cardiopulmonary Bypass, Waldenstrom Macroglobulinemia complications
- Abstract
Waldenstrom's Macroglobulinaemia (WM) is a rare haematological lymphoma that causes numerous haemostatic complications due to the elevated levels of immunoglobulin M (IgM) circulating in the blood. These complications, such as hyperviscosity syndrome, may be exacerbated by the physiological effects of cardiopulmonary bypass (CPB). In this case study, a 45-year-old male suffering from WM underwent an emergency aortic valve replacement, closure of an atrio-ventricular fistula and mitral valve repair. He was found to have an elevated blood viscosity, anaemia and hypervolaemia prior to surgery. These complications remained a problem during CPB, leading to a large circulating volume, but a low haemoglobin, requiring haemofiltration and blood transfusions whilst limiting any further rise in blood viscosity. The situation was further compounded by the presence of electrolyte disturbances. It was concluded that a careful balance between blood conservation techniques and temperature management was required to reduce hyperviscosity and anaemia, but maintain organ protection. In future, given more time, modern plasmapheresis techniques could be used for acute management of WM during CPB.
- Published
- 2004
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32. Facile synthesis of site-specifically acetylated and methylated histone proteins: reagents for evaluation of the histone code hypothesis.
- Author
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He S, Bauman D, Davis JS, Loyola A, Nishioka K, Gronlund JL, Reinberg D, Meng F, Kelleher N, and McCafferty DG
- Subjects
- Acetylation, Amino Acid Sequence, Animals, Binding Sites, Chromatin metabolism, Histones chemistry, Humans, In Vitro Techniques, Indicators and Reagents, Methylation, Models, Biological, Molecular Sequence Data, Molecular Structure, Protein Structure, Quaternary, Recombinant Fusion Proteins biosynthesis, Recombinant Fusion Proteins chemistry, Recombinant Fusion Proteins genetics, Xenopus laevis, Histones biosynthesis, Histones genetics
- Abstract
The functional capacity of genetically encoded histone proteins can be powerfully expanded by posttranslational modification. A growing body of biochemical and genetic evidence clearly links the unique combinatorial patterning of side chain acetylation, methylation, and phosphorylation mainly within the highly conserved N termini of histones H2A, H2B, H3, and H4 with the regulation of gene expression and chromatin assembly and remodeling, in effect constituting a "histone code" for epigenetic signaling. Deconvoluting this code has proved challenging given the inherent posttranslational heterogeneity of histone proteins isolated from biological sources. Here we describe the application of native chemical ligation to the preparation of full-length histone proteins containing site-specific acetylation and methylation modifications. Peptide thioesters corresponding to histone N termini were prepared by solid phase peptide synthesis using an acid labile Boc/HF assembly strategy, then subsequently ligated to recombinantly produced histone C-terminal globular domains containing an engineered N-terminal cysteine residue. The ligation site is then rendered traceless by hydrogenolytic desulfurization, generating a native histone protein sequence. Synthetic histones generated by this method are fully functional, as evidenced by their self-assembly into a higher order H3/H4 heterotetramer, their deposition into nucleosomes by human ISWI-containing (Imitation of Switch) factor RSF (Remodeling and Spacing Factor), and by enzymatic modification by human Sirt1 deacetylase and G9a methyltransferase. Site-specifically modified histone proteins generated by this method will prove invaluable as novel reagents for the evaluation of the histone code hypothesis and analysis of epigenetic signaling mechanisms.
- Published
- 2003
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33. Addition of epinephrine to epidural ropivacaine during labour--effects on onset and duration of action, efficacy, and systemic absorption of ropivacaine.
- Author
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Leonard SA, Flynn R, Kelleher N, and Shorten GD
- Abstract
Addition of epinephrine to epidural anaesthetic solutions may enhance efficacy and duration of analgesia. We postulated that addition of epinephrine 5 microg.mL(-1) to epidural ropivacaine would improve efficacy, decrease systemic absorption and reduce neonatal effects. Twenty-one multiparous women were studied. An initial dose of ropivacaine 30 mg followed by an infusion of ropivacaine 10 mg.h(-1) was given via a lumbar epidural catheter. According to random allocation, epinephrine 5 microg.mL(-1) was added to ropivacaine. Ropivacaine concentrations were measured in maternal venous plasma after one hour of infusion and in both umbilical venous and maternal plasma at delivery. Neonatal neurologic and adaptive capacity score (NACS) tests were performed at 2 and 24 h postpartum. All women delivered vaginally. The groups had similar ropivacaine dose requirements, epidural-delivery intervals and satisfaction scores. Bromage scores for motor block were greater in the epinephrine group (2; range: 1-3) than controls (1; range: 0-2). Mean plasma ropivacaine concentrations (+/-SD) were less in the epinephrine group (0.17 +/- 0.05 mg.L(-1), n = 10) than controls (0.31 +/- 0.14 mg.L(-1), n = 11; P < 0.05) after one h of infusion but not at delivery. UV ropivacaine concentrations and NACS scores were similar in the two groups. The addition of epinephrine to ropivacaine decreases maternal plasma concentrations after one h of epidural infusion but also increases motor block.
- Published
- 2002
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34. Mannitol in cardioplegia as an oxygen free radical scavenger measured by malondialdehyde.
- Author
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Larsen M, Webb G, Kennington S, Kelleher N, Sheppard J, Kuo J, and Unsworth-White J
- Subjects
- Adult, Aged, Aged, 80 and over, Biomarkers blood, Coronary Artery Bypass, Double-Blind Method, Free Radical Scavengers pharmacology, Humans, Mannitol pharmacology, Middle Aged, Reactive Oxygen Species metabolism, Free Radical Scavengers administration & dosage, Heart Arrest, Induced methods, Malondialdehyde blood, Mannitol administration & dosage
- Abstract
Oxygen free radicals (OFRs) are associated with ischaemia-reperfusion injury involving many organs, including the heart, which can lead to depressed cardiac function and abnormalities in the cardiac ultrastructure. This is seen upon the release of the aortic crossclamp when the ischaemic myocardium is reperfused in patients undergoing cardiopulmonary bypass (CPB). Various studies have shown that by adding OFR scavenging agents or antioxidants to the CPB prime or cardioplegia, cardiac performance improves. Mannitol is an osmotic diuretic with free radical scavenging properties, which has been shown to reduce the extent of ischaemic injury and improve the function of the myocardium. This study evaluated how effective mannitol is as an OFR scavenger by administering different concentrations of cardioplegia antegrade into the aortic root, thus maximising its effects directly upon the myocardium rather than being diluted in the CPB prime. Thirty-three patients undergoing primary coronary artery bypass grafting (CABG) were, by double blind random selection, allocated into one of three groups: group 1, a control group (consisting of 11 patients) receiving no mannitol; group 2 (11 patients), receiving a concentration of 4 g/l; and group 3 (11 patients), receiving 8 g/l. Three blood samples were taken directly from the coronary sinus during bypass: the first sample at the start of bypass, just prior to the crossclamp being applied; the second sample just after removal of the crossclamp; and the third sample just prior to termination of bypass. All samples were then centrifuged and the plasma analysed for malondialdehyde (MDA) using high-performance liquid chromatography (HPLC). MDA, an endproduct of lipid peroxidation, causes cellular damage and disruption of cell membranes when tissue antioxidants are exhausted. The more MDA produced, the greater the depletion of tissue antioxidants secondary to OR formation during reperfusion when the aortic crossclamp is removed. HPLC is a useful biochemical study; however, it is not a direct indicator of depressed myocardial function, such as an invasive test would be, and this should be borne in mind. Statistically, the results do not show a significant difference among the three groups or among the three samples. However, a trend can be seen, which shows lower levels of MDA in the two groups receiving mannitol and there is an indication of a rise in MDA levels upon the start of reperfusion in the two groups receiving mannitol, but not the control group. It is concluded that further samples would be needed to find a significant difference in MDA concentrations.
- Published
- 2002
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35. Epidural ropivacaine hydrochloride during labour: protein binding, placental transfer and neonatal outcome.
- Author
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Porter JM, Kelleher N, Flynn R, and Shorten GD
- Subjects
- Adult, Amides administration & dosage, Anesthetics, Local administration & dosage, Apgar Score, Female, Fetal Blood chemistry, Glycoproteins metabolism, Humans, Infant, Newborn, Linear Models, Neurologic Examination, Pregnancy, Prospective Studies, Protein Binding, Ropivacaine, Amides metabolism, Analgesia, Epidural methods, Analgesia, Obstetrical methods, Anesthetics, Local metabolism, Maternal-Fetal Exchange physiology
- Abstract
This study was undertaken: (i) to quantify the effects of labour and epidural analgesia on plasma alpha1-acid glycoprotein concentration, (ii) to examine the effects of changes in plasma alpha1-acid glycoprotein concentration on plasma protein binding and placental transfer of ropivacaine, and (iii) to examine the association between umbilical venous ropivacaine concentration and neurobehavioural function in the neonate. Multiparous patients undergoing induction of labour received a continuous epidural infusion of 0.1% ropivacaine following an epidural bolus. A significant association was demonstrated between maternal plasma alpha1-acid glycoprotein concentration and 1/free fraction of ropivacaine 60 min after starting ropivacaine administration (r(2) = 0.77) but not at delivery. No significant correlation was demonstrable between maternal unbound ropivacaine concentration and either neonatal (cord) ropivacaine concentration or UV/MV (a measure of placental transfer). Thirty minutes after delivery, 9/10 neonates had neurological and adaptive capacity scores < 35, whereas only three infants had scores < 35 at 2 h. All scores exceeded 35 16 h after delivery. No association between mean (SD) umbilical venous ropivacaine concentration [0.09 (0.08) mg x l(-1)] and neurological and adaptive capacity scores was demonstrated.
- Published
- 2001
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36. Fungal atopy in adult cystic fibrosis.
- Author
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Henry M, Bennett DM, Kiely J, Kelleher N, and Bredin CP
- Subjects
- Adolescent, Adult, Aspergillosis, Allergic Bronchopulmonary etiology, Biomarkers, Cross-Sectional Studies, Cystic Fibrosis microbiology, Diagnosis, Differential, Female, Humans, Male, Skin Tests, Antibodies, Fungal analysis, Aspergillosis, Allergic Bronchopulmonary diagnosis, Cystic Fibrosis immunology, Hypersensitivity, Immediate diagnosis, Immunoglobulin E analysis
- Abstract
This study set out to estimate the prevalence of atopy to a variety of common ubiquitous fungi, including A. fumigatus, in cystic fibrosis (CF), and to evaluate the investigations by which the diagnosis was made. Particular attention was paid to the usefulness of skin testing and immunoassays in detecting which patients had simple fungal atopy, and which patients were at high risk of developing allergic bronchopulmonary mycoses. This cross-sectional study included 21 adult CF patients and 20 matched controls. Serum samples were taken for the measurement of total serum IgE and specific serum IgE to nine common fungi. Immediate hypersensitivity skin prick testing to each of the fungi was also performed. Simple fungal atopy was described in subjects fulfilling the following criteria: total serum IgE > 100 KU l(-1) with specific radioimmunoassay > or = grade 1 to at least one fungus and a positive skin prick test (SPT) > or = 3 mm to the same fungus. 'High risk' for developing allergic bronchopulmonary mycosis (ABPM) was described in subjects fulfilling the following criteria: total serum IgE > 200 KU l(-1) with specific radioimmunoassay > or = grade 2 to at least one fungus and a positive skin prick test (SPT) > or = 6 mm to the same fungus. The adult CF group had a significantly higher total SPT score (P=0.005) and mean total serum IgE (P<0.05) than controls. Forty-three percent of CF patients fulfilled the criteria for fungal atopy to at least a single fungus. Over half this group had an atopic tendency to more than one fungus. Nineteen percent of the CF group were at least 'high risk' of developing ABPM. Skin prick testing is a better marker of fungal atopy and a better predictor of those adult CF patients at higher risk of developing ABPM than specific radioimmunoassay serum testing. There is a high prevalence of fungal atopy in the adult CF population. Total serum IgE and skin prick testing are good predictors of fungal atopy and help predict those at risk of developing ABPM in CF.
- Published
- 2000
- Full Text
- View/download PDF
37. Chest radiographic staging in allergic bronchopulmonary aspergillosis: relationship with immunological findings.
- Author
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Kiely JL, Spense L, Henry M, Hurley MF, Kelleher N, and Bredin CP
- Subjects
- Antibodies, Fungal blood, Aspergillus fumigatus immunology, Aspergillus fumigatus isolation & purification, Eosinophils, Humans, Immunoglobulin E blood, Leukocyte Count, Middle Aged, Radiography, Skin Tests, Aspergillosis, Allergic Bronchopulmonary diagnostic imaging, Aspergillosis, Allergic Bronchopulmonary immunology, Lung diagnostic imaging
- Abstract
The question of whether a chest radiographic severity staging system could be correlated with standard blood/serum diagnostic indices in allergic bronchopulmonary aspergillosis (ABPA) was addressed in 41 patients. Asthma and positive Aspergillus fumigatus (AF) serology were considered essential diagnostic inclusion criteria. Eosinophil count, serum immunoglobulin (Ig)E and immediate skin hypersensitivity were also tested to grade patients as "definite" or "likely" ABPA. Definite cases had all five of these factors present, whereas likely cases had three or more. Chest radiographs were examined by experienced radiologists blinded to the clinical data. The six-stage radiographic score (0-5) was based on the severity and duration of changes seen: stage 0: normal; stage 1: transient hyperinflation; stage 2: transient minor changes; stage 3: transient major changes; stage 4: permanent minor changes; and stage 5: permanent major changes. Significant positive correlations (p<0.05) were observed between peak AF titres (expressed as an index), peak eosinophil count and radiographic severity stage. When considered as subgroups, these correlations approached, but did not reach, significance for the group with "likely" ABPA (n=28), but in the group with definite ABPA (n=13), there was a high correlation between radiographic score and peak AF index (r=0.59), as well as peak eosinophil count (r=0.62). This study suggests that the peak Aspergillus fumigatus index and eosinophil counts correlate best with the severity of radiographic stages in allergic bronchopulmonary aspergillosis. This chest radiographic staging system may be useful in the clinical assessment and management of patients with allergic bronchopulmonary aspergillosis, particularly in those patients with more severe radiographic stages.
- Published
- 1998
- Full Text
- View/download PDF
38. Age standardised incidence rates of lip, tongue and mouth cancers in three regions of Ireland, 1984-1988.
- Author
-
Kelleher N, Lamas M, McCartan B, and Ormsby M
- Subjects
- Adolescent, Adult, Age Distribution, Aged, Aged, 80 and over, Child, Denmark epidemiology, Female, Humans, Incidence, Ireland epidemiology, Lip Neoplasms epidemiology, Male, Middle Aged, Northern Ireland epidemiology, Registries, Tongue Neoplasms epidemiology, Mouth Neoplasms epidemiology
- Published
- 1993
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