41 results on '"Nambu JR"'
Search Results
2. Structure and expression of the egg-laying hormone gene family in Aplysia
- Author
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Mahon, AC, primary, Nambu, JR, additional, Taussig, R, additional, Shyamala, M, additional, Roach, A, additional, and Scheller, RH, additional
- Published
- 1985
- Full Text
- View/download PDF
3. Egg-laying hormone genes of Aplysia: evolution of the ELH gene family
- Author
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Nambu, JR, primary and Scheller, RH, additional
- Published
- 1986
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- View/download PDF
4. Drosophila morgue associates with SkpA and polyubiquitin in vivo.
- Author
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Zhou Y, Wang Y, Schreader BA, and Nambu JR
- Subjects
- Animals, Blotting, Western, Drosophila, F-Box Motifs genetics, Immunohistochemistry, Immunoprecipitation, Mass Spectrometry, Protein Binding, Silver Staining, Zinc Fingers genetics, Drosophila Proteins metabolism, Eye Proteins metabolism, Polyubiquitin metabolism, SKP Cullin F-Box Protein Ligases metabolism, Ubiquitin-Protein Ligases metabolism
- Abstract
Morgue is a unique ubiquitination protein that influences programmed cell death and circadian rhythms in Drosophila. We have found that over-expression of wild-type Morgue results in organismal lethality. This over-expression phenotype was used as the basis for an in vivo functional assay to investigate the importance of the Morgue zinc finger, F box, Ubiquitin E2 Conjugase Variant (UEV) domain, and active site Glycine residue. Removal of the zinc finger or UEV domain reduced Morgue's ability to induce lethality and enhance cell death. In contrast, lack of the F box as well as several different substitutions of the active site Glycine did not alter Morgue-induced lethality or cell death enhancement. To further characterize Morgue functions, a Flag:Morgue protein was used to isolate Morgue-associated proteins from whole adult Drosophila. Mass spectrometry analysis of the Morgue-associated proteins identified SkpA as well as a ubiquitin multimer. The identification of SkpA is consistent with previous in vitro studies and further suggests Morgue acts in an SCF-type ubiquitin E3 ligase complex. The identification of poly-ubiquitin was unexpected and this interaction had not been previously identified. The associated poly-ubiquitin was found to exhibit a Lys-48 topology, consistent with distinct functions of Morgue in proteasome-mediated protein turnover. Multiple regions of Morgue were subsequently shown to be required for poly-ubiquitin binding. Overall, Morgue is a novel multi-functional ubiquitin-binding protein.
- Published
- 2013
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- View/download PDF
5. The sox gene Dichaete is expressed in local interneurons and functions in development of the Drosophila adult olfactory circuit.
- Author
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Melnattur KV, Berdnik D, Rusan Z, Ferreira CJ, and Nambu JR
- Subjects
- Alleles, Animals, Arthropod Antennae innervation, Arthropod Antennae physiology, Chromosome Mapping, Drosophila Proteins genetics, Gene Deletion, Genetic Markers, Immunohistochemistry, Mutagenesis, Insertional, Mutation genetics, Mutation physiology, Olfactory Receptor Neurons physiology, Parasympathetic Nervous System cytology, Parasympathetic Nervous System growth & development, SOX Transcription Factors genetics, gamma-Aminobutyric Acid physiology, Drosophila physiology, Drosophila Proteins biosynthesis, Interneurons metabolism, Olfactory Pathways growth & development, SOX Transcription Factors biosynthesis
- Abstract
In insects, the primary sites of integration for olfactory sensory input are the glomeruli in the antennal lobes. Here, axons of olfactory receptor neurons synapse with dendrites of the projection neurons that relay olfactory input to higher brain centers, such as the mushroom bodies and lateral horn. Interactions between olfactory receptor neurons and projection neurons are modulated by excitatory and inhibitory input from a group of local interneurons. While significant insight has been gleaned into the differentiation of olfactory receptor and projection neurons, much less is known about the development and function of the local interneurons. We have found that Dichaete, a conserved Sox HMG box gene, is strongly expressed in a cluster of LAAL cells located adjacent to each antennal lobe in the adult brain. Within these clusters, Dichaete protein expression is detected in both cholinergic and GABAergic local interneurons. In contrast, Dichaete expression is not detected in mature or developing projection neurons, or developing olfactory receptor neurons. Analysis of novel viable Dichaete mutant alleles revealed misrouting of specific projection neuron dendrites and axons, and alterations in glomeruli organization. These results suggest noncell autonomous functions of Dichaete in projection neuron differentiation as well as a potential role for Dichaete-expressing local interneurons in development of the adult olfactory circuitry., (Copyright © 2012 Wiley Periodicals, Inc.)
- Published
- 2013
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- View/download PDF
6. Targeted expression of p35 reveals a role for caspases in formation of the adult abdominal cuticle in Drosophila.
- Author
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Kester RS and Nambu JR
- Subjects
- Abdomen growth & development, Animal Structures growth & development, Animal Structures metabolism, Animals, Animals, Genetically Modified, Apoptosis genetics, Drosophila genetics, Drosophila growth & development, Drosophila Proteins genetics, Extremities growth & development, Female, Gene Expression Regulation, Developmental, Genitalia, Male growth & development, Genitalia, Male metabolism, Green Fluorescent Proteins genetics, Green Fluorescent Proteins metabolism, Immunohistochemistry, Lac Operon genetics, Larva genetics, Larva growth & development, Larva metabolism, Male, Microscopy, Confocal, Microscopy, Fluorescence, Viral Proteins genetics, beta-Galactosidase metabolism, Caspases metabolism, Drosophila metabolism, Drosophila Proteins metabolism, Viral Proteins metabolism
- Abstract
Programmed cell death is a fundamental aspect of metazoan development associated with the elaboration of disparate tissues and structures. Specialized cysteine proteases, the caspases, are mediators of cell death; once activated they cleave substrate proteins to dismantle doomed cells. Caspase activity is regulated by several cellular and viral inhibitors. The baculovirus p35 protein blocks the action of a wide range of caspases and inhibits cell death in divergent species. Here, we utilize the Gal4/UAS system to target p35 expression and analyze the requirements of caspase activity for development in Drosophila. We confirm that cell death is essential for proper morphogenesis of the adult male external genitalia and distal portions of the legs. In addition, we find that caspases are also required for elimination of larval epidermal cells and normal elaboration of the adult abdominal cuticle by histoblast derivatives. In particular, rescued p35-expressing larval epidermal cells accumulate along the abdominal midline and are associated with corresponding splits in both dorsal and ventral cuticle structures. This study reveals a novel role for cell death in a specific morphogenetic processes.
- Published
- 2011
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7. Drosophila Pelle phosphorylates Dichaete protein and influences its subcellular distribution in developing oocytes.
- Author
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Mutsuddi M, Mukherjee A, Shen B, Manley JL, and Nambu JR
- Subjects
- Animals, Blotting, Western, Drosophila Proteins genetics, Drosophila melanogaster embryology, Drosophila melanogaster genetics, Embryo, Nonmammalian embryology, Embryo, Nonmammalian metabolism, Eye Abnormalities genetics, Eye Abnormalities metabolism, Female, Intracellular Space metabolism, Male, Mice, Mutation, Oocytes growth & development, Phosphorylation, Protein Binding, Protein Serine-Threonine Kinases genetics, SOX Transcription Factors genetics, SOXB1 Transcription Factors genetics, SOXB1 Transcription Factors metabolism, Two-Hybrid System Techniques, Drosophila Proteins metabolism, Drosophila melanogaster metabolism, Oocytes metabolism, Protein Serine-Threonine Kinases metabolism, SOX Transcription Factors metabolism
- Abstract
The Drosophila Dichaete gene encodes a member of the Sox family of high mobility group (HMG) domain proteins that have crucial gene regulatory functions in diverse developmental processes. The subcellular localization and transcriptional regulatory activities of Sox proteins can be regulated by several post-translational modifications. To identify genes that functionally interact with Dichaete, we undertook a genetic modifier screen based on a Dichaete gain-of-function phenotype in the adult eye. Mutations in several genes, including decapentaplegic, engrailed and pelle, behaved as dominant modifiers of this eye phenotype. Further analysis of pelle mutants revealed that loss of pelle function results in alterations in the distinctive cytoplasmic distribution of Dichaete protein within the developing oocyte, as well as defects in the elaboration of individual egg chambers. The death domain-containing region of the Pelle protein kinase was found to associate with both Dichaete and mouse Sox2 proteins, and Pelle can phosphorylate Dichaete protein in vitro. Overall, these findings reveal that maternal functions of pelle are essential for proper localization of Dichaete protein in the oocyte and normal egg chamber formation. Dichaete appears to be a novel phosphorylation substrate for Pelle and may function in a Pelle-dependent signaling pathway during oogenesis.
- Published
- 2010
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8. Drosophila morgue influences cell numbers and positions in the embryonic nervous system.
- Author
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Schreader BA, Wang Y, Carter S, Grigas J, and Nambu JR
- Subjects
- Animals, Animals, Genetically Modified, Cell Count, Cell Death, Drosophila Proteins chemistry, Drosophila melanogaster metabolism, Eye Proteins chemistry, F-Box Motifs genetics, Mutation, Nervous System chemistry, Nervous System embryology, Polymerase Chain Reaction, Pupa genetics, Pupa metabolism, Recombinant Fusion Proteins metabolism, Ubiquitination, Zinc Fingers, Drosophila Proteins genetics, Drosophila Proteins metabolism, Drosophila melanogaster embryology, Drosophila melanogaster genetics, Eye Proteins genetics, Eye Proteins metabolism, Neuroglia cytology, Neurons cytology
- Abstract
Morgue is a unique multi-domain protein that contains a zinc finger motif, an F box, and a variant E2 conjugase domain. The presence of these domains suggests potentially complex and novel functions for Morgue in ubiquitination pathways. Morgue was originally identified via its gain-of-function enhancement of eye cell death phenotypes in Drosophila and ectopic expression of Morgue also influences circadian rhythms. However, there is as yet little known about Morgues normal developmental or physiological functions. To address this issue, we generated several morgue loss-of-function mutants via P element excision mutagenesis and analyzed the mutant phenotypes during the fly life cycle. These studies revealed that morgue null mutants are viable, though approximately 10% of the mutants exhibit defects in pupal spiracle eversion and malformations in the adult abdominal cuticle. In addition, a similar subset of morgue mutant embryos exhibited alterations in the normal number, position, or morphology of specific neurons and glia. Analysis of Morgue protein localization was addressed through generation of a transgenic fly strain that expresses a GFP::Morgue fusion protein. Use of this strain revealed Morgue protein localization in multiple cellular compartments, including nuclei, cytoplasm and membranes. Taken together, these diverse phenotypes and distribution patterns suggest pleiotropic functions for Morgue.
- Published
- 2010
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9. The unique Morgue ubiquitination protein is conserved in a diverse but restricted set of invertebrates.
- Author
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Zhou Y, Carpenter ZW, Brennan G, and Nambu JR
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- Amino Acid Sequence, Animals, Base Sequence, Eye Proteins chemistry, F-Box Proteins chemistry, Introns genetics, Molecular Sequence Data, Phylogeny, Protein Structure, Tertiary, Sequence Homology, Amino Acid, Vertebrates genetics, Zinc Fingers, Conserved Sequence, Eye Proteins genetics, Invertebrates genetics, Ubiquitination
- Abstract
Drosophila Morgue is a unique ubiquitination protein that facilitates programmed cell death and associates with DIAP1, a critical cell death inhibitor with E3 ubiquitin ligase activity. Morgue possesses a unique combination of functional domains typically associated with distinct types of ubiquitination enzymes. This includes an F box characteristic of the substrate-binding subunit in Skp, Cullin, and F box (SCF)-type ubiquitin E3 ligase complexes and a variant ubiquitin E2 conjugase domain where the active site cysteine is replaced by a glycine. Morgue also contains a single C4-type zinc finger motif. This architecture suggests potentially novel ubiquitination activities for Morgue. In this study, we address the evolutionary origins of this distinctive protein utilizing a combination of bioinformatics and molecular biology approaches. We find that Morgue exhibits widespread but restricted phylogenetic distribution among metazoans. Morgue proteins were identified in a wide range of Protostome phyla, including Arthropoda, Annelida, Mollusca, Nematoda, and Platyhelminthes. However, with one potential exception, Morgue was not detected in Deuterostomes, including Chordates, Hemichordates, or Echinoderms. Morgue was also not found in Ctenophora, Cnidaria, Placozoa, or Porifera. Characterization of Morgue sequences within specific animal lineages suggests that gene deletion or acquisition has occurred during divergence of nematodes and that at least one arachnid expresses an atypical form of Morgue consisting only of the variant E2 conjugase domain. Analysis of the organization of several morgue genes suggests that exon-shuffling events have contributed to the evolution of the Morgue protein. These results suggest that Morgue mediates conserved and distinctive ubiquitination functions in specific cell death pathways.
- Published
- 2009
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10. Isolation and characterization of a Drosophila neuropeptide gene.
- Author
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Scheller RH and Nambu JR
- Subjects
- Amino Acid Sequence, Animals, Drosophila melanogaster genetics, FMRFamide genetics, History, 20th Century, Drosophila melanogaster metabolism, Neuropeptides genetics
- Published
- 2008
- Full Text
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11. Maternal expression and function of the Drosophila sox gene Dichaete during oogenesis.
- Author
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Mukherjee A, Melnattur KV, Zhang M, and Nambu JR
- Subjects
- Animals, DNA-Binding Proteins analysis, DNA-Binding Proteins physiology, Drosophila embryology, Drosophila ultrastructure, Drosophila Proteins analysis, Drosophila Proteins physiology, Female, High Mobility Group Proteins analysis, High Mobility Group Proteins physiology, Immunohistochemistry, In Situ Hybridization, Microscopy, Electron, Scanning, Oogenesis physiology, Reverse Transcriptase Polymerase Chain Reaction, SOX Transcription Factors, Transcription Factors analysis, Transcription Factors physiology, DNA-Binding Proteins genetics, Drosophila genetics, Drosophila Proteins genetics, Gene Expression Regulation, Developmental genetics, High Mobility Group Proteins genetics, Oogenesis genetics, Transcription Factors genetics
- Abstract
Members of the Sox family of DNA-binding HMG domain proteins have been shown to regulate gene transcription in a wide range of developmental processes, including sex determination, neurogenesis, and chondrogenesis. However, little is known about their potential functions in developing germline tissues. In Drosophila, the Sox protein Dichaete (a.k.a., Fish-hook) is a member of the SoxB subgroup whose HMG domain shares strong sequence similarity to that of vertebrate Sox2. Dichaete exhibits dynamic expression in embryonic and larval stages and has pleiotropic functions in a variety of tissues. In this study, we extend analyses of Dichaete function and show that expression of Dichaete protein is detected in the developing oocyte during early to mid stages of oogenesis. Strikingly, Dichaete exhibits cytoplasmic distribution and is not detected in the oocyte nucleus. Germline mosaic analyses revealed that the Dichaete gene has maternal functions that influence dorsal/ventral patterning of the egg chamber. Dichaete mutant eggs exhibit defects in formation of the dorsal appendages, differentiation of dorsal/anterior follicle cells, and mislocalization of Gurken protein and gurken mRNA. Dichaete protein was shown to possess RNA-binding capabilities, suggesting a direct post-transcriptional role in regulating RNA functions., ((c) 2006 Wiley-Liss, Inc.)
- Published
- 2006
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12. A fine balance for life and death decisions.
- Author
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Schreader BA and Nambu JR
- Subjects
- Animals, Proteins antagonists & inhibitors, Apoptosis physiology, Caspases physiology, Cell Survival physiology, Proteins physiology
- Published
- 2004
- Full Text
- View/download PDF
13. Drosophila morgue and the intersection between protein ubiquitination and programmed cell death.
- Author
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Schreader BA, Wang Y, and Nambu JR
- Subjects
- Amino Acid Sequence, Animals, Anopheles metabolism, Binding Sites, Caspases metabolism, Cell Survival, Cysteine chemistry, Drosophila physiology, Drosophila Proteins chemistry, Drosophila Proteins genetics, Eye Proteins chemistry, Eye Proteins genetics, Models, Biological, Molecular Sequence Data, Protein Binding, Protein Structure, Tertiary, Sequence Homology, Amino Acid, Ubiquitin-Protein Ligases metabolism, Apoptosis, Drosophila genetics, Drosophila Proteins physiology, Eye Proteins physiology, Ubiquitin metabolism
- Abstract
In Drosophila, cell survival decisions are mediated by the integrated functions of the Grim-Reaper death activators and Inhibitor-of-Apoptosis-Proteins (IAPs), such as DIAP1, to regulate caspase activities. We recently identified a gene that enhances the actions of the Grim-Reaper proteins and negatively regulates the levels of DIAP1 protein. This gene, morgue, encodes a novel protein that contains both an F box and a ubiquitin conjugase domain. Interestingly, the Morgue conjugase domain lacks the active site cysteine required for covalent linkage to ubiquitin. Morgue could target IAPs and other proteins for ubiquitination and proteasome-dependent turnover by acting either in an SCF ubiquitin E3 ligase complex, or as a ubiquitin E2 conjugase enzyme variant (UEV) in conjunction with a catalytically active E2 conjugase. Morgue is evolutionarily conserved, as a Morgue ortholog was identified from the mosquito, Anopheles gambiae. Elucidation of morgue function should provide novel insights into the mechanisms of ubiquitination and programmed cell death.
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- 2003
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14. P[52A-GAL4] is an insertion in the Drosophila GP150 gene.
- Author
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Melnattur K, Rawson E, and Nambu JR
- Subjects
- Animals, DNA-Binding Proteins, Drosophila melanogaster embryology, Gene Expression Regulation, Developmental, Genes, Reporter, Animals, Genetically Modified, Drosophila Proteins genetics, Drosophila melanogaster genetics, Insect Proteins, Membrane Glycoproteins genetics, Saccharomyces cerevisiae Proteins genetics, Transcription Factors genetics
- Published
- 2002
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15. Drosophila Morgue is an F box/ubiquitin conjugase domain protein important for grim-reaper mediated apoptosis.
- Author
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Wing JP, Schreader BA, Yokokura T, Wang Y, Andrews PS, Huseinovic N, Dong CK, Ogdahl JL, Schwartz LM, White K, and Nambu JR
- Subjects
- Amino Acid Sequence, Animals, Cells, Cultured, Drosophila, Drosophila Proteins chemistry, Eye Proteins chemistry, Gene Expression Regulation, Enzymologic, Inhibitor of Apoptosis Proteins, Insect Proteins metabolism, Ligases genetics, Molecular Sequence Data, Protein Structure, Tertiary, Ubiquitin metabolism, Ubiquitin-Conjugating Enzymes, Apoptosis physiology, Drosophila Proteins genetics, Drosophila Proteins metabolism, Eye Proteins genetics, Eye Proteins metabolism, Ligases chemistry, Neuropeptides metabolism, Peptides metabolism, SKP Cullin F-Box Protein Ligases
- Abstract
In Drosophila melanogaster, apoptosis is controlled by the integrated actions of the Grim-Reaper (Grim-Rpr) and Drosophila Inhibitor of Apoptosis (DIAP) proteins (reviewed in refs 1 4). The anti-apoptotic DIAPs bind to caspases and inhibit their proteolytic activities. DIAPs also bind to Grim-Rpr proteins, an interaction that promotes caspase activity and the initiation of apoptosis. Using a genetic modifier screen, we identified four enhancers of grim-reaper-induced apoptosis that all regulate ubiquitination processes: uba-1, skpA, fat facets (faf), and morgue. Strikingly, morgue encodes a unique protein that contains both an F box and a ubiquitin E2 conjugase domain that lacks the active site Cys required for ubiquitin linkage. A reduction of morgue activity suppressed grim-reaper-induced cell death in Drosophila. In cultured cells, Morgue induced apoptosis that was suppressed by DIAP1. Targeted morgue expression downregulated DIAP1 levels in Drosophila tissue, and Morgue and Rpr together downregulated DIAP1 levels in cultured cells. Consistent with potential substrate binding functions in an SCF ubiquitin E3 ligase complex, Morgue exhibited F box-dependent association with SkpA and F box-independent association with DIAP1. Morgue may thus have a key function in apoptosis by targeting DIAP1 for ubiquitination and turnover.
- Published
- 2002
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16. Parkinsonism proteolysis and proteasomes.
- Author
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Schwartz LM, Nambu JR, and Wang Z
- Subjects
- Humans, Lewy Bodies pathology, Parkinsonian Disorders enzymology, Parkinsonian Disorders pathology, Proteasome Endopeptidase Complex, Synucleins, Cysteine Endopeptidases metabolism, Multienzyme Complexes metabolism, Nerve Tissue Proteins metabolism, Parkinsonian Disorders metabolism, Ubiquitin metabolism
- Published
- 2002
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17. Drosophila sickle is a novel grim-reaper cell death activator.
- Author
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Wing JP, Karres JS, Ogdahl JL, Zhou L, Schwartz LM, and Nambu JR
- Subjects
- Amino Acid Sequence, Animals, Cell Line, Drosophila embryology, Drosophila Proteins chemistry, Molecular Sequence Data, Sequence Homology, Amino Acid, Cell Death genetics, Drosophila genetics, Drosophila Proteins genetics, Neuropeptides genetics, Peptides genetics
- Abstract
The Drosophila genes reaper, head involution defective (hid), and grim all reside at 75C on chromosome three and encode related proteins that have crucial functions in programmed cell death (reviewed in ). In this report, we describe a novel grim-reaper gene, termed sickle, that resides adjacent to reaper. The sickle gene, like reaper and grim, encodes a small protein which contains an RHG motif and a Trp-block. In wild-type embryos, sickle expression was detected in cells of the developing central nervous system. Unlike reaper, hid, and grim, the sickle gene is not removed by Df(3L)H99, and strong ectopic sickle expression was detected in the nervous system of this cell death mutant. sickle very effectively induced cell death in cultured Spodoptera Sf-9 cells, and this death was antagonized by the caspase inhibitors p35 or DIAP1. Strikingly, unlike the other grim-reaper genes, targeted sickle expression did not induce cell death in the Drosophila eye. However, sickle strongly enhanced the eye cell death induced by expression of either an r/grim chimera or reaper.
- Published
- 2002
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18. The RHG motifs of Drosophila Reaper and Grim are important for their distinct cell death-inducing abilities.
- Author
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Wing JP, Schwartz LM, and Nambu JR
- Subjects
- Amino Acid Motifs, Amino Acid Sequence, Animals, Bacterial Outer Membrane Proteins metabolism, Caspases metabolism, Cell Death, Central Nervous System embryology, Drosophila, Genes, Dominant, Immunohistochemistry, Inhibitor of Apoptosis Proteins, Insect Proteins metabolism, Lipoproteins metabolism, Molecular Sequence Data, Neuropeptides metabolism, Neuropeptides physiology, Peptides metabolism, Peptides physiology, Phenotype, Photoreceptor Cells, Invertebrate metabolism, Recombinant Fusion Proteins chemistry, Sequence Homology, Amino Acid, Drosophila Proteins, Neuropeptides chemistry, Peptides chemistry
- Abstract
Reaper, Hid, and Grim are three Drosophila cell death activators that each contain a conserved NH(2)-terminal Reaper, Hid, Grim (RHG) motif. We have analyzed the importance of the RHG motifs in Reaper and Grim for their different abilities to activate cell death during development. Analysis of chimeric R/Grim and G/Reaper proteins indicated that the Reaper and Grim RHG motifs are functionally distinct and help to determine specific cell death activation properties. A truncated GrimC protein lacking the RHG motif retained an ability to induce cell death, and unlike Grim, R/Grim, or G/Reaper, its actions were not efficiently blocked by the cell death inhibitors, Diap1, Diap2, p35, or a dominant/negative Dronc caspase. Finally, we identified a second region of sequence similarity in Reaper, Hid, and Grim, that may be important for shared RHG motif-independent activities.
- Published
- 2001
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19. Functional interactions between Drosophila bHLH/PAS, Sox, and POU transcription factors regulate CNS midline expression of the slit gene.
- Author
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Ma Y, Certel K, Gao Y, Niemitz E, Mosher J, Mukherjee A, Mutsuddi M, Huseinovic N, Crews ST, Johnson WA, and Nambu JR
- Subjects
- Animals, Base Sequence, Basic Helix-Loop-Helix Transcription Factors, Binding Sites, DNA-Binding Proteins genetics, Drosophila melanogaster embryology, Helix-Loop-Helix Motifs, High Mobility Group Proteins genetics, Insect Proteins genetics, Molecular Sequence Data, Mutagenesis, Nuclear Proteins genetics, SOX Transcription Factors, Transcription, Genetic, DNA-Binding Proteins metabolism, Drosophila Proteins, Drosophila melanogaster genetics, Gene Expression Regulation, Developmental, High Mobility Group Proteins metabolism, Nerve Tissue Proteins genetics, Nervous System embryology, Nuclear Proteins metabolism, Transcription Factors metabolism
- Abstract
During Drosophila embryogenesis the CNS midline cells have organizing activities that are required for proper elaboration of the axon scaffold and differentiation of neighboring neuroectodermal and mesodermal cells. CNS midline development is dependent on Single-minded (Sim), a basic-helix-loop-helix (bHLH)-PAS transcription factor. We show here that Fish-hook (Fish), a Sox HMG domain protein, and Drifter (Dfr), a POU domain protein, act in concert with Single-minded to control midline gene expression. single-minded, fish-hook, and drifter are all expressed in developing midline cells, and both loss- and gain-of-function assays revealed genetic interactions between these genes. The corresponding proteins bind to DNA sites present in a 1 kb midline enhancer from the slit gene and regulate the activity of this enhancer in cultured Drosophila Schneider line 2 cells. Fish-hook directly associates with the PAS domain of Single-minded and the POU domain of Drifter; the three proteins can together form a ternary complex in yeast. In addition, Fish can form homodimers and also associates with other bHLH-PAS and POU proteins. These results indicate that midline gene regulation involves the coordinate functions of three distinct types of transcription factors. Functional interactions between members of these protein families may be important for numerous developmental and physiological processes.
- Published
- 2000
20. The Drosophila sox gene, fish-hook, is required for postembryonic development.
- Author
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Mukherjee A, Shan X, Mutsuddi M, Ma Y, and Nambu JR
- Subjects
- Animals, Base Sequence, DNA Primers, Eye embryology, Microscopy, Electron, Scanning, SOX Transcription Factors, DNA-Binding Proteins, Drosophila genetics, Drosophila growth & development, Drosophila Proteins, Embryonic Development, High Mobility Group Proteins genetics, Transcription Factors
- Abstract
In Drosophila, the fish-hook (fish) gene encodes a Sox protein essential for embryonic segmentation and nervous system organization. In this study we examined potential functional roles of fish in postembryonic developmental processes, including those involved in adult appendage development. We show here that Fish protein is expressed in discrete patterns in the larval eye-antennal and leg imaginal discs, the central nervous system, the hindgut, and salivary glands. Genetic mosaic studies indicated that fish function is required for the growth or survival of imaginal cells, and the expression of engrailed and wingless. Ectopic expression of Fish protein resulted in severe disruption of adult structures; legs and antennae were truncated and eye formation was suppressed. These morphological defects were correlated with altered expression patterns of the wingless, decapentaplegic, and bric-a-brac genes. Finally, analysis of truncated versions of Fish protein indicated that the HMG domain was sufficient for Fish nuclear localization and that removal of the transcriptional activation domain did not eliminate Fish function. While Sox proteins have been shown to be important for eye and limb formation in vertebrates, these data provide the first evidence for Sox protein functions in appendage development in invertebrates., (Copyright 2000 Academic Press.)
- Published
- 2000
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21. Cloning and analysis of small cytoplasmic leucine-rich repeat protein (SCLP), a novel, phylogenetically-conserved protein that is dramatically up-regulated during the programmed death of moth skeletal muscle.
- Author
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Kuelzer F, Kuah P, Bishoff ST, Cheng L, Nambu JR, and Schwartz LM
- Subjects
- Amino Acid Sequence, Animals, Animals, Genetically Modified, Base Sequence, Caenorhabditis elegans genetics, Cloning, Molecular, Conserved Sequence, Drosophila embryology, Evolution, Molecular, Female, Insect Proteins chemistry, Male, Manduca genetics, Molecular Sequence Data, Muscle, Skeletal cytology, Nervous System metabolism, Organ Specificity, Phylogeny, Recombinant Proteins chemistry, Sequence Alignment, Sequence Homology, Amino Acid, Apoptosis physiology, Gene Expression Regulation, Developmental, Insect Proteins genetics, Manduca physiology, Muscle, Skeletal metabolism
- Abstract
We used the abdominal intersegmental muscles (ISMs) of the moth Manduca sexta as a source of transcripts that are dramatically up-regulated during programmed cell death. One of these transcripts, Small Cytoplasmic Leucine-Rich Repeat Protein (SCLP), encodes a protein of approximately 24 kD that contains four perfect and two imperfect leucine-rich repeat (LRR) motifs. DNA sequence database analysis suggests that SCLP is a phylogenetically-conserved gene of unknown function. Both Northern and Western blots demonstrated that SCLP is expressed in the ISMs at all stages examined, but increases greater than 10-fold when the cells become committed to die. This increase in expression is regulated by the same change in the circulating ecdysteroid titer that controls death. Low levels of SCLP expression are also seen in flight muscle and fat body, but not in ovary, male sexual accessory gland, or Malpighian tubules. Immunohistochemical analysis demonstrates that SCLP is a cytoplasmic protein. Western blot analysis of proteins from the fly Drosophila suggests that an SCLP-related protein is expressed at the larval and pupal stages, but not in embryos or adults. Targeted expression of moth SCLP to a variety of different tissues in Drosophila using the Gal4/UAS P element system failed to generate an overt phenotype. These data are interpreted as suggesting that whereas SCLP presumably plays an important role in programmed cell death of muscle, perhaps by acting as an adaptor protein, its expression is insufficient to initiate death by itself., (Copyright 1999 John Wiley & Sons, Inc.)
- Published
- 1999
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22. Lepidopteran DALP, and its mammalian ortholog HIC-5, function as negative regulators of muscle differentiation.
- Author
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Hu Y, Cascone PJ, Cheng L, Sun D, Nambu JR, and Schwartz LM
- Subjects
- Amino Acid Sequence, Animals, Animals, Genetically Modified, Base Sequence, Cell Differentiation, Cell Line, Cytoskeletal Proteins chemistry, Cytoskeletal Proteins genetics, DNA-Binding Proteins chemistry, DNA-Binding Proteins genetics, Drosophila, Humans, Intracellular Signaling Peptides and Proteins, LIM Domain Proteins, Mammals, Manduca genetics, Mice, Molecular Sequence Data, Muscle Development, Muscles cytology, Recombinant Proteins metabolism, Sequence Alignment, Sequence Homology, Amino Acid, Transcription Factors chemistry, Transcription Factors genetics, Transcription, Genetic, Transfection, Zinc Fingers, Cytoskeletal Proteins physiology, DNA-Binding Proteins physiology, Gene Expression Regulation, Developmental, Insect Proteins, Manduca growth & development, Transcription Factors physiology
- Abstract
During myogenesis, reductions in trophic factor availability signal most myoblasts to fuse, up-regulate the expression of muscle-specific genes, and form myotubes. Those cells failing to differentiate into myotubes initiate apoptosis and rapidly die. At present, the signal-transduction molecules that determine whether myoblasts should differentiate or die are largely unknown. In this report, we describe the cloning and characterization of DALP, a small LIM-only type zinc-finger protein that is induced when the intersegmental muscles (ISMs) of the moth Manduca sexta become committed to die at the end of metamorphosis. Forced expression of death-associated LIM-only protein (DALP) in Drosophila results in skeletal muscle atrophy. Ectopic expression of DALP, or its mammalian ortholog Hic-5, blocks differentiation and induces apoptosis in mouse C(2)C(12) myoblasts. Both of these effects can be overcome by contact with normal myoblasts or by ectopic expression of the muscle-specific transcription factor MyoD. Hic-5 expression is specifically and dramatically induced in normal myoblasts that die after removal of trophic support. Taken together, these data suggest that DALP and Hic-5 act upstream of MyoD and function as phylogenetically conserved "switches" to block muscle differentiation and induce death.
- Published
- 1999
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23. Neural disease: Drosophila degenerates for a good cause.
- Author
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Mutsuddi M and Nambu JR
- Subjects
- Animals, Glutamic Acid, Humans, Microsatellite Repeats, Mutation, Drosophila genetics, Genes, Insect, Nerve Degeneration genetics
- Abstract
Human neurodegenerative disorders are typified by late onset cell loss in specific brain regions and stereotypic neuroanatomical and behavioral aberrations. Recent studies suggest that molecular genetic approaches in Drosophila may shed important new light on conserved mechanisms underlying such disorders.
- Published
- 1998
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24. Distinct cell killing properties of the Drosophila reaper, head involution defective, and grim genes.
- Author
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Wing JP, Zhou L, Schwartz LM, and Nambu JR
- Subjects
- Animals, Central Nervous System cytology, Central Nervous System embryology, Drosophila cytology, Drosophila embryology, Eye cytology, Eye growth & development, Gene Expression Regulation, Developmental, Inhibitor of Apoptosis Proteins, Insect Proteins genetics, Microscopy, Electron, Scanning, Neuropeptides genetics, Peptides genetics, Apoptosis genetics, Drosophila genetics, Drosophila Proteins, Genes, Insect
- Abstract
The Drosophila reaper, head involution defective (hid), and grim genes play key roles in regulating the activation of programmed cell death. Two useful systems for studying the functions of these genes are the embryonic CNS midline and adult eye. In this study we use the Gal4/UAS targeted gene expression system to demonstrate that unlike reaper or hid, expression of grim alone is sufficient to induce ectopic CNS midline cell death. We also show that in both the midline and eye, grim-induced cell death is not blocked by the Drosophila anti-apoptosis protein Diap2, which does block both reaper- and hid-induced cell death. grim can also function synergistically with reaper or hid to induce higher levels of midline cell death than observed for any of the genes individually. Finally we analyzed the function of a truncated Reaper-C protein which lacks the NH2-terminal 14 amino acids that are conserved between Reaper, Hid, and Grim. Ectopic expression of Reaper-C revealed cell killing activities distinct from full length Reaper, and indicated that the conserved NH2-terminal domain acts in part to modulate Reaper activity.
- Published
- 1998
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25. Cloning and characterization of Pros45, the Drosophila SUG1 proteasome subunit homolog.
- Author
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Cheng L, Roemer N, Smyth KA, Belote J, Nambu JR, and Schwartz LM
- Subjects
- Adenosine Triphosphatases, Amino Acid Sequence, Animals, Base Sequence, Chromosome Mapping, Cloning, Molecular, Drosophila melanogaster embryology, Gene Expression Regulation, Developmental, Molecular Sequence Data, Saccharomyces cerevisiae, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Carrier Proteins chemistry, Carrier Proteins genetics, Drosophila Proteins, Drosophila melanogaster enzymology, Drosophila melanogaster genetics, Endopeptidases, Fungal Proteins genetics, Peptide Hydrolases chemistry, Peptide Hydrolases genetics, Proteasome Endopeptidase Complex, Repressor Proteins genetics, Saccharomyces cerevisiae Proteins, Sequence Homology, Amino Acid
- Abstract
The proteasome plays essential roles in a variety of cellular processes, including degradation of the bulk of cellular proteins, degradation of short-lived proteins such as cell cycle regulators, generation of antigenic peptides, and mediating programmed cell death. One of the best characterized subunits of the 26S proteasome is encoded by the yeast gene SUG1. We report here the cloning and characterization of the Drosophila homolog of this gene, Pros45. At the protein level, Pros45 is highly conserved with respect to its homologs in a variety of taxa: it shows 74% identity to yeast Sug1; 86% to mouse m56/mSug1/FZA-B; 87% to human Trip1; and 97% to moth 18-56. Using a genomic clone as a probe for in situ hyridization to polytene chromesomes, we demonstrated that Pros45 maps to 19F, near the base of the X chromosome. Use of a pros45 cDNA clone as a probe revealed a second site of hybridization at 99CD. Pros45 mRNA is found in the unfertilized egg and in all cells of the early embryo. By the end of embryogenesis, Pros45 is expressed predominantly in the central nervous system. Targeted expression of Pros45 in a variety of different cells using the Gal4 UAS P-element system failed to generate an overt phenotype. This study provides the foundation for further examination of the role of the 26S proteasome in homeostasis and development in Drosophila.
- Published
- 1998
- Full Text
- View/download PDF
26. Gene regulatory functions of Drosophila fish-hook, a high mobility group domain Sox protein.
- Author
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Ma Y, Niemitz EL, Nambu PA, Shan X, Sackerson C, Fujioka M, Goto T, and Nambu JR
- Subjects
- Animals, Base Sequence, DNA Primers, Drosophila embryology, SOX Transcription Factors, Transcriptional Activation physiology, DNA-Binding Proteins physiology, Drosophila genetics, Drosophila Proteins, Gene Expression Regulation, Developmental physiology, High Mobility Group Proteins physiology, Transcription Factors physiology
- Abstract
In this study we investigate the gene regulatory functions of Drosophila Fish-hook (Fish), a high mobility group (HMG) Sox protein that is essential for embryonic segmentation. We show that the Fish HMG domain binds to the vertebrate Sox protein consensus DNA binding sites, AACAAT and AACAAAG, and that this binding induces an 85 degrees DNA bend. In addition, we use a heterologous yeast system to show that the NH2-terminal portion of Fish protein can function as a transcriptional activator. Fish directly regulates the expression of the pair rule gene, even-skipped (eve), by binding to multiple sites located in downstream regulatory regions that direct formation of eve stripes 1, 4, 5, and 6. Fish may function along with the Drosophila POU domain proteins Pdm-1 and Pdm-2 to regulate eve transcription, as genetic interactions were detected between fish and pdm mutants. Finally, we determined that Fish protein is expressed in a dynamic pattern throughout embryogenesis, and is present in nuclear and cytoplasmic compartments., (Copyright 1998 Elsevier Science Ireland Ltd. All rights reserved.)
- Published
- 1998
- Full Text
- View/download PDF
27. CNS midline to mesoderm signaling in Drosophila.
- Author
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Zhou L, Xiao H, and Nambu JR
- Subjects
- Animals, Basic Helix-Loop-Helix Transcription Factors, Cell Differentiation genetics, Central Nervous System physiology, DNA-Binding Proteins genetics, Embryo, Nonmammalian physiology, Epidermal Growth Factor metabolism, Gene Expression Regulation, Developmental, Genes, Insect, Homeodomain Proteins genetics, Insect Proteins genetics, Membrane Proteins genetics, Mutation, Nuclear Proteins genetics, Proto-Oncogene Proteins genetics, Receptors, Cell Surface, Wnt1 Protein, Central Nervous System embryology, Drosophila embryology, Drosophila Proteins, Mesoderm physiology, Signal Transduction, Transcription Factors
- Abstract
The dorsal median cells are unique mesodermal cells that reside on the surface of the ventral nerve cord in the Drosophila embryo. The Buttonless homeodomain protein is specifically expressed in these cells and is required for their differentiation. We have determined that proper buttonless gene expression and dorsal median cell differentiation requires signals from underlying CNS midline cells. Thus, dorsal median cells fail to form in single-minded mutants and do not persist in slit mutants. Through analysis of rhomboid mutants and targeted rhomboid expression, we also show that the EGF signaling pathway regulates the number of both the dorsal median cells, as well as a set of mesodermal cells that arise next to the midline and express the single-minded gene. Finally, wingless-patched double mutants exhibit defects in the restriction of dorsal median cells to segment boundaries and alterations in CNS midline cell fates. Taken together, these data define a novel neuroectoderm to mesoderm signaling pathway and suggest that unique mesodermal cell types are specified by a combination of midline and segmental cues.
- Published
- 1997
- Full Text
- View/download PDF
28. Cooperative functions of the reaper and head involution defective genes in the programmed cell death of Drosophila central nervous system midline cells.
- Author
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Zhou L, Schnitzler A, Agapite J, Schwartz LM, Steller H, and Nambu JR
- Subjects
- Animals, Apoptosis, Crosses, Genetic, Drosophila cytology, Drosophila genetics, Embryo, Nonmammalian cytology, Embryo, Nonmammalian physiology, Multigene Family, Nervous System cytology, Nervous System embryology, Neuroglia cytology, Neuroglia physiology, Peptide Biosynthesis, Recombinant Proteins biosynthesis, beta-Galactosidase biosynthesis, Drosophila physiology, Drosophila Proteins, Gene Expression Regulation, Developmental, Genes, Insect genetics, Genes, Insect physiology, Nervous System Physiological Phenomena, Peptides genetics
- Abstract
In Drosophila, the chromosomal region 75C1-2 contains at least three genes, reaper (rpr), head involution defective (hid), and grim, that have important functions in the activation of programmed cell death. To better understand how cells are killed by these genes, we have utilized a well defined set of embryonic central nervous system midline cells that normally exhibit a specific pattern of glial cell death. In this study we show that both rpr and hid are expressed in dying midline cells and that the normal pattern of midline cell death requires the function of multiple genes in the 75C1-2 interval. We also utilized the P[UAS]/P[Gal4] system to target expression of rpr and hid to midline cells. Targeted expression of rpr or hid alone was not sufficient to induce ectopic midline cell death. However, expression of both rpr and hid together rapidly induced ectopic midline cell death that resulted in axon scaffold defects characteristic of mutants with abnormal midline cell development. Midline-targeted expression of the baculovirus p35 protein, a caspase inhibitor, blocked both normal and ectopic rpr- and hid-induced cell death. Taken together, our results suggest that rpr and hid are expressed together and cooperate to induce programmed cell death during development of the central nervous system midline.
- Published
- 1997
- Full Text
- View/download PDF
29. The Drosophila fish-hook gene encodes a HMG domain protein essential for segmentation and CNS development.
- Author
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Nambu PA and Nambu JR
- Subjects
- Amino Acid Sequence, Animals, DNA Transposable Elements, Drosophila melanogaster genetics, Enhancer Elements, Genetic, Gene Expression Regulation, Developmental, Genes, Insect, In Situ Hybridization, Molecular Sequence Data, Mutagenesis, Insertional, RNA, Messenger genetics, Restriction Mapping, SOX Transcription Factors, Transcription, Genetic, Body Patterning, Central Nervous System embryology, DNA-Binding Proteins, Drosophila Proteins, Drosophila melanogaster embryology, High Mobility Group Proteins genetics, High Mobility Group Proteins physiology, Transcription Factors
- Abstract
We describe the isolation and analysis of the Drosophila fish-hook (fish) gene, which encodes a novel member of the SOX subgroup of High Mobility Group (HMG) domain proteins that exhibit similarity to the mammalian testis determining factor, SRY. The fish gene is initially expressed in a pair-rule-like pattern which is rapidly replaced by strong neuroectoderm expression. fish null mutants exhibit severe segmentation defects, including loss and/or fusion of abdominal denticle belts and stripe-specific defects in pair-rule and segment polarity gene expression.fish mutant embryos also exhibit loss of specific neurons, fusion of adjacent ventral nerve cord ganglia and aberrant axon scaffold organization. These results indicate an essential role for fish in anterior/posterior pattern formation and nervous system development, and suggest a potential function in modulating the activities of gap and pair-rule proteins.
- Published
- 1996
- Full Text
- View/download PDF
30. Alternate functions of the single-minded and rhomboid genes in development of the Drosophila ventral neuroectoderm.
- Author
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Xiao H, Hrdlicka LA, and Nambu JR
- Subjects
- Animals, Basic Helix-Loop-Helix Transcription Factors, DNA-Binding Proteins genetics, Drosophila, Ectoderm chemistry, Embryo, Nonmammalian chemistry, Gene Expression Regulation, Developmental, Hedgehog Proteins, Helix-Loop-Helix Motifs genetics, Helix-Loop-Helix Motifs physiology, Immunohistochemistry, In Situ Hybridization, Insect Hormones genetics, Insect Hormones physiology, Insect Proteins metabolism, Membrane Proteins genetics, Mutation, Nuclear Proteins genetics, Phenotype, Proto-Oncogene Proteins metabolism, Repressor Proteins genetics, Repressor Proteins physiology, Wnt1 Protein, DNA-Binding Proteins physiology, Drosophila Proteins, Membrane Proteins physiology, Nuclear Proteins physiology
- Abstract
We have investigated the roles of the single-minded (sim) and rhomboid (rho) genes in generating distinct cell fates in the Drosophila embryonic neuroectoderm. We show that sim functions to repress ventral ectodermal cell fates, as in sim mutants mesectodermal cells adopt the fates of neighboring ventral ectodermal cells and targeted sim expression in P[paired.Gal4]/P[UAS-sim] embryos results in loss of epidermal cells. We also find that rho is not required for early expression of sim or ventral nervous system defective in mesectodermal or ventral ectodermal cells; targeted rho expression in P[paired-Gal4]/P[UAS-rho] embryos results in lateral-to-ventral cell fate shifts in the developing neuroectoderm; and midline-targeted rho expression can rescue the medial denticle fusions in rho mutant cuticles.
- Published
- 1996
- Full Text
- View/download PDF
31. The Drosophila melanogaster similar bHLH-PAS gene encodes a protein related to human hypoxia-inducible factor 1 alpha and Drosophila single-minded.
- Author
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Nambu JR, Chen W, Hu S, and Crews ST
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Basic Helix-Loop-Helix Transcription Factors, Chromosome Mapping, DNA, DNA-Binding Proteins chemistry, Drosophila melanogaster metabolism, Gene Expression, Genes, Insect, Humans, Hypoxia-Inducible Factor 1, Hypoxia-Inducible Factor 1, alpha Subunit, Molecular Sequence Data, Nuclear Proteins chemistry, Phylogeny, Sequence Homology, Amino Acid, Transcription Factors chemistry, DNA-Binding Proteins genetics, Drosophila Proteins, Drosophila melanogaster genetics, Transcription Factors genetics
- Abstract
The Drosophila melanogaster (Dm) similar (sima) gene was isolated using a low-stringency hybridization screen employing a Dm single-minded gene basic helix-loop-helix (bHLH) DNA probe. sima is a member of the bHLH-PAS gene family and the conceptual protein shares a number of structural features, including a bHLH domain, PAS domain, and homopolymeric amino acid stretches. Sima is most closely related to the human hypoxia-inducible factor 1 alpha bHLH-PAS protein. In situ hybridization experiments reveal that sima is transcribed in most or all cells throughout embryogenesis. It has been cytologically mapped to position 99D on the third chromosome, and is not closely linked to other known bHLH-PAS genes.
- Published
- 1996
- Full Text
- View/download PDF
32. Programmed cell death in the Drosophila central nervous system midline.
- Author
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Zhou L, Hashimi H, Schwartz LM, and Nambu JR
- Subjects
- Animals, Axons physiology, Cell Differentiation, Cell Movement, Central Nervous System cytology, Central Nervous System embryology, Drosophila cytology, Drosophila genetics, Gene Expression Regulation, Developmental, Genes, Insect, Hemocytes physiology, Macrophages physiology, Mutation, Peptides genetics, Phagocytosis, Apoptosis, Drosophila embryology, Drosophila Proteins
- Abstract
Background: During the development of the central nervous system, large numbers of cells die by programmed cell death. This process requires the activity of specific gene products and subserves functions that include regulating the sizes of interacting cell populations and removing cells that provide transient functions. Resolution of programmed cell death often involves the elimination of dying cell corpses by phagocytic macrophages. In Drosophila, the reaper gene plays a crucial role in mediating programmed cell death; chromosomal deficiencies which remove reaper result in an absence of programmed cell death. We have used a reaper-deficiency mutant strain Df(3R)H99 (or H99), in conjunction with strains containing cell-type-specific markers, to examine the role of programmed cell death in differentiation of the embryonic central nervous system midline., Results: Midline cell death was identified both by the presence of excess midline cells in H99 mutants and by the engulfment of dying midline cells by macrophages in wild-type embryos. These developmental deaths are lineage-specific: prominent midline glial death was observed, while little if any death was detected among the ventral unpaired median neurons. Examination of H99 mutants indicates that cell death is not required for the formation of macrophage precursors, or for their subsequent migration throughout the embryo; however, in the absence of dying cells, macrophage precursors do not exhibit morphological differentiation or phagocytosis. In both wild-type and H99 mutant embryos, a subset of macrophages migrate along the ventral midline. This midline migration is not observed in single-minded mutants, in which ventral midline cells fail to develop., Conclusions: Programmed cell death plays a crucial role in the development of the central nervous system midline, and dying midline cells are rapidly eliminated by phagocytic macrophages. It seems that the generation of engulfment signals in cells undergoing programmed cell death is downstream of reaper gene function, and that central nervous system midline and/or ventral epidermal cells provide directional cues for migrating macrophages.
- Published
- 1995
- Full Text
- View/download PDF
33. The development and function of the Drosophila CNS midline cells.
- Author
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Nambu JR, Lewis JO, and Crews ST
- Subjects
- Animals, Central Nervous System embryology, Drosophila embryology, Central Nervous System growth & development, Drosophila growth & development
- Abstract
1. The midline cells of the Drosophila embryonic CNS comprise a discrete neuroanatomical structure consisting of a small subset of neurons and glia. 2. Developmental commitment of the CNS midline cells requires the action of dorsal/ventral patterning genes. 3. The single-minded gene encodes a basic-helix-loop-helix transcription factor and acts as a master regulator for the CNS midline lineage. 4. A number of different transcription factors and proteins involved in cell-cell interactions are necessary for the differentiation of midline neurons and glia. 5. CNS midline cells have important functions in the formation of the ventral epidermis and axon commissures.
- Published
- 1993
- Full Text
- View/download PDF
34. Dorsal-ventral patterning in Drosophila: DNA binding of snail protein to the single-minded gene.
- Author
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Kasai Y, Nambu JR, Lieberman PM, and Crews ST
- Subjects
- Adenovirus Early Proteins, Alleles, Animals, Base Sequence, Blastoderm physiology, DNA-Binding Proteins metabolism, Drosophila embryology, Embryo, Nonmammalian physiology, Molecular Sequence Data, Oligodeoxyribonucleotides, Oncogene Proteins, Viral genetics, Promoter Regions, Genetic, beta-Galactosidase genetics, beta-Galactosidase metabolism, DNA-Binding Proteins genetics, Drosophila genetics, Genes, Zinc Fingers genetics
- Abstract
The Drosophila snail gene is required for proper mesodermal development. Genetic studies suggest that it functions by repressing adjacent ectodermal gene expression including that of the single-minded (sim) gene. The snail gene encodes a protein with a zinc-finger motif, and here we report that the snail gene product is a sequence-specific DNA binding protein. The snail protein recognizes a 14-base-pair consensus sequence that is found nine times in a 2.8-kilobase sim regulatory region. These results provide evidence for the direct control of sim transcription by snail.
- Published
- 1992
- Full Text
- View/download PDF
35. The Drosophila single-minded gene encodes a helix-loop-helix protein that acts as a master regulator of CNS midline development.
- Author
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Nambu JR, Lewis JO, Wharton KA Jr, and Crews ST
- Subjects
- Amino Acid Sequence, Animals, DNA Mutational Analysis, Drosophila melanogaster embryology, Gene Expression, Molecular Sequence Data, RNA, Messenger genetics, Sequence Alignment, Central Nervous System embryology, DNA-Binding Proteins physiology, Drosophila melanogaster genetics, Nuclear Proteins physiology, Transcription Factors physiology
- Abstract
Development of the Drosophila CNS midline cells is dependent upon the function of the single-minded (sim) gene. Sequence analysis shows that sim is a member of the basic-helix-loop-helix class of transcription factors. Cell fate experiments establish that sim is required for early events in midline cell development, including a synchronized cell division, proper formation of nerve cell precursors, and positive auto-regulation of its midline expression. Induction of ectopic sim protein under the control of the hsp70 promoter shows that sim can direct cells of the lateral CNS to exhibit midline cell morphology and patterns of gene expression. We propose that sim functions as a master developmental regulator of the CNS midline lineage.
- Published
- 1991
- Full Text
- View/download PDF
36. The single-minded gene of Drosophila is required for the expression of genes important for the development of CNS midline cells.
- Author
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Nambu JR, Franks RG, Hu S, and Crews ST
- Subjects
- Animals, Drosophila embryology, Embryo, Nonmammalian physiology, Gene Expression Regulation, Mutation, Nervous System cytology, Nervous System embryology, Phenotype, Drosophila genetics, Genes
- Abstract
The single-minded (sim) gene of Drosophila encodes a nuclear protein that plays a critical role in the development of the neurons, glia, and other nonneuronal cells that lie along the midline of the embryonic CNS. Using distinct cell fate markers, we observe that in sim mutant embryos the midline cells fail to differentiate properly into their mature CNS cell types and do not take their appropriate positions within the developing CNS. We further present evidence that sim is required for midline expression of a group of genes including slit, Toll, rhomboid, engrailed, and a gene at 91F; that the sim mutant CNS defect may be largely due to loss of midline slit expression; and that the snail gene is required to repress sim and other midline genes in the presumptive mesoderm.
- Published
- 1990
- Full Text
- View/download PDF
37. Neuropeptides in identified Aplysia neurons.
- Author
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Kaldany RR, Nambu JR, and Scheller RH
- Subjects
- Animals, Aplysia genetics, DNA analysis, Feeding Behavior physiology, Female, Gene Expression Regulation, In Vitro Techniques, Invertebrate Hormones physiology, Locomotion, Nerve Tissue Proteins genetics, Neurotransmitter Agents physiology, Oviposition, RNA, Messenger isolation & purification, Receptors, Cell Surface physiology, Synaptic Transmission, Aplysia physiology, Behavior, Animal physiology, Ganglia physiology, Nerve Tissue Proteins physiology
- Abstract
Extensive electrophysiological experiments on Aplysia neurons have resulted in an understanding of simple behaviors in terms of the activities of a single identified neurons. Beginning with the work of Kupfermann & Kandel, neuropeptides in Aplysia have become increasingly implicated as chemical agents that control or affect behavior. Several neuropeptides have been isolated and characterized; recently, the genes that code for several of these neuropeptides have been isolated. Studies of neuropeptide gene expression and the behaviors affected thereby have been bridged in the egg-laying hormone neuroendocrine system. The role of polyproteins in coordinating complex, fixed-action patterns is beginning to emerge. The continued investigation of this neuroendocrine system, and the other cell-specific polyproteins that have been characterized more recently, promises to yield further insights into the roles of neuropeptides in governing behavior.
- Published
- 1985
- Full Text
- View/download PDF
38. Gene isolation with cDNA probes from identified Aplysia neurons: neuropeptide modulators of cardiovascular physiology.
- Author
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Nambu JR, Taussig R, Mahon AC, and Scheller RH
- Subjects
- Amino Acid Sequence, Animals, Aplysia physiology, Base Sequence, Cardiovascular Physiological Phenomena, DNA, Neurons metabolism, Poly A genetics, Protein Biosynthesis, Protein Precursors genetics, RNA genetics, RNA, Messenger, Transcription, Genetic, Aplysia genetics, Genes, Nerve Tissue Proteins genetics, Neurons analysis
- Abstract
The Aplysia abdominal ganglion neurons, R3-R14, modulate cardiovascular activity. In vitro translations of poly(A)+ RNA from these cells suggest that they contain a prevalent mRNA encoding a 14 kd protein. Utilizing differential screening techniques with 32P-labeled cDNA synthesized from the poly(A)+ RNA of identified neurons, we isolated the corresponding gene. The Aplysia haploid genome contains a single copy of this sequence, which is interrupted by two large introns and spans approximately 7 kb of genomic DNA. The R3-R14 neurons specifically express this gene, resulting in the synthesis of a 1.25 kb mRNA not found in other abdominal ganglion cells or in the head ganglia. The gene was shown to encode a 13.5 kd precursor, which is proteolytically cleaved into at least three peptides with molecular weights of 5.0, 3.3, and 1.3 kd. These peptides and glycine are thought to act as chemical messengers in the central nervous system and peripherally.
- Published
- 1983
- Full Text
- View/download PDF
39. Neuropeptides: mediators of behavior in Aplysia.
- Author
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Scheller RH, Kaldany RR, Kreiner T, Mahon AC, Nambu JR, Schaefer M, and Taussig R
- Subjects
- Animals, Behavior, Animal, Cloning, Molecular, DNA, Recombinant metabolism, Female, Ganglia physiology, Genes, Male, Nerve Tissue Proteins genetics, Neurons physiology, Protein Biosynthesis, Reproduction, Aplysia physiology, Nerve Tissue Proteins physiology, Nervous System Physiological Phenomena
- Abstract
The Aplysia neuroendocrine system is a particularly advantageous model for cellular and molecular studies because of the relatively small number and large size of its component neurons. Recombinant DNA techniques have been used to isolate the genes that encode the precursors of peptides expressed in identified neurons of known function. The organization and developmental expression of these genes have been examined in detail. Several of the genes encode precursors of multiple biologically active peptides that are expressed in cells which also contain classical transmitters. These studies, as well as immunohistochemical studies and the use of intracellular recording and voltage clamp techniques are the first steps toward revealing the mechanisms by which neuropeptides govern simple behaviors.
- Published
- 1984
- Full Text
- View/download PDF
40. Isolation and characterization of a Drosophila neuropeptide gene.
- Author
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Nambu JR, Murphy-Erdosh C, Andrews PC, Feistner GJ, and Scheller RH
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, FMRFamide, Molecular Sequence Data, Drosophila genetics, Genes, Neuropeptides genetics
- Abstract
We have purified a 9 amino acid amidated neuropeptide, DPKQDFMRFamide, from whole adult D. melanogaster. This peptide exhibits sequence homology to the molluscan bioactive tetrapeptide FMRFamide and is a novel member of the FMRFamide peptide family. The gene encoding DPKQDFMRFamide has been cloned and characterized. It is present in a single copy per haploid genome, is expressed as a unique 1.7 kb mRNA species, and cytologically maps to 46C on the right arm of chromosome 2. Characterization of a cDNA clone indicates that the precursor protein is 347 amino acids in length and contains 5 copies of DPKQDFMRFamide, as well as 10 additional amidated peptides exhibiting varying degrees of structural relatedness. The Drosophila DPKQDFMRFamide gene and the Aplysia FMRFamide gene are ancestrally related; however, peptides display a higher degree of homology within a species than between species, suggesting intragenic concerted evolution of these neuropeptides.
- Published
- 1988
- Full Text
- View/download PDF
41. Expression of the egg-laying hormone gene family in the head ganglia of Aplysia.
- Author
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Shyamala M, Nambu JR, and Scheller RH
- Subjects
- Animals, Base Sequence, Cloning, Molecular, DNA isolation & purification, DNA, Recombinant, Invertebrate Hormones biosynthesis, Nucleic Acid Hybridization, Aplysia genetics, Ganglia metabolism, Invertebrate Hormones genetics, RNA, Messenger metabolism
- Abstract
RNA blotting and cDNA cloning techniques were used to study expression of the egg-laying hormone (ELH) gene family in the head ganglia of Aplysia californica. All head ganglia were found to express a 1800 nucleotide (nt) mRNA homologous to the ELH gene family. The nucleotide sequence of a clone isolated from a ring ganglia cDNA library demonstrates that this message encodes the ELH precursor. Further studies demonstrate the presence of a smaller, 1500 nt, transcript which encodes the peptide A precursor. However, the level of this mRNA is at least 10-fold lower than the ELH encoding message.
- Published
- 1986
- Full Text
- View/download PDF
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