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3. Supplementary Table S2 from Slow-Cycling Cancer Stem Cells Regulate Progression and Chemoresistance in Colon Cancer

Author

Shiokawa, Daisuke, primary, Sakai, Hiroaki, primary, Ohata, Hirokazu, primary, Miyazaki, Toshiaki, primary, Kanda, Yusuke, primary, Sekine, Shigeki, primary, Narushima, Daichi, primary, Hosokawa, Masahito, primary, Kato, Mamoru, primary, Suzuki, Yutaka, primary, Takeyama, Haruko, primary, Kambara, Hideki, primary, Nakagama, Hitoshi, primary, and Okamoto, Koji, primary

Published
2023
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4. Supplementary Figures from Slow-Cycling Cancer Stem Cells Regulate Progression and Chemoresistance in Colon Cancer

Author

Shiokawa, Daisuke, primary, Sakai, Hiroaki, primary, Ohata, Hirokazu, primary, Miyazaki, Toshiaki, primary, Kanda, Yusuke, primary, Sekine, Shigeki, primary, Narushima, Daichi, primary, Hosokawa, Masahito, primary, Kato, Mamoru, primary, Suzuki, Yutaka, primary, Takeyama, Haruko, primary, Kambara, Hideki, primary, Nakagama, Hitoshi, primary, and Okamoto, Koji, primary

Published
2023
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5. Supplementary Materials and Methods from Slow-Cycling Cancer Stem Cells Regulate Progression and Chemoresistance in Colon Cancer

Author

Shiokawa, Daisuke, primary, Sakai, Hiroaki, primary, Ohata, Hirokazu, primary, Miyazaki, Toshiaki, primary, Kanda, Yusuke, primary, Sekine, Shigeki, primary, Narushima, Daichi, primary, Hosokawa, Masahito, primary, Kato, Mamoru, primary, Suzuki, Yutaka, primary, Takeyama, Haruko, primary, Kambara, Hideki, primary, Nakagama, Hitoshi, primary, and Okamoto, Koji, primary

Published
2023
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6. Significance of molecular classification of ependymomas: C11orf95-RELA fusion-negative supratentorial ependymomas are a heterogeneous group of tumors

Author

Fukuoka, Kohei, Kanemura, Yonehiro, Shofuda, Tomoko, Fukushima, Shintaro, Yamashita, Satoshi, Narushima, Daichi, Kato, Mamoru, Honda-Kitahara, Mai, Ichikawa, Hitoshi, Kohno, Takashi, Sasaki, Atsushi, Hirato, Junko, Hirose, Takanori, Komori, Takashi, Satomi, Kaishi, Yoshida, Akihiko, Yamasaki, Kai, Nakano, Yoshiko, Takada, Ai, Nakamura, Taishi, Takami, Hirokazu, Matsushita, Yuko, Suzuki, Tomonari, Nakamura, Hideo, Makino, Keishi, Sonoda, Yukihiko, Saito, Ryuta, Tominaga, Teiji, Matsusaka, Yasuhiro, Kobayashi, Keiichi, Nagane, Motoo, Furuta, Takuya, Nakada, Mitsutoshi, Narita, Yoshitaka, Hirose, Yuichi, Ohba, Shigeo, Wada, Akira, Shimizu, Katsuyoshi, Kurozumi, Kazuhiko, Date, Isao, Fukai, Junya, Miyairi, Yousuke, Kagawa, Naoki, Kawamura, Atsufumi, Yoshida, Makiko, Nishida, Namiko, Wataya, Takafumi, Yamaoka, Masayoshi, Tsuyuguchi, Naohiro, Uda, Takehiro, Takahashi, Mayu, Nakano, Yoshiteru, Akai, Takuya, Izumoto, Shuichi, Nonaka, Masahiro, Yoshifuji, Kazuhisa, Kodama, Yoshinori, Mano, Masayuki, Ozawa, Tatsuya, Ramaswamy, Vijay, Taylor, Michael D., Ushijima, Toshikazu, Shibui, Soichiro, Yamasaki, Mami, Arai, Hajime, Sakamoto, Hiroaki, Nishikawa, Ryo, Ichimura, Koichi, and on behalf of the Japan Pediatric Molecular Neuro-Oncology Group (JPMNG)

Published
2018
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7. Bevacizumab beyond Progression for Newly Diagnosed Glioblastoma (BIOMARK): Phase II Safety, Efficacy and Biomarker Study

Author

Nagane, Motoo, primary, Ichimura, Koichi, additional, Onuki, Ritsuko, additional, Narushima, Daichi, additional, Honda-Kitahara, Mai, additional, Satomi, Kaishi, additional, Tomiyama, Arata, additional, Arai, Yasuhito, additional, Shibata, Tatsuhiro, additional, Narita, Yoshitaka, additional, Uzuka, Takeo, additional, Nakamura, Hideo, additional, Nakada, Mitsutoshi, additional, Arakawa, Yoshiki, additional, Ohnishi, Takanori, additional, Mukasa, Akitake, additional, Tanaka, Shota, additional, Wakabayashi, Toshihiko, additional, Aoki, Tomokazu, additional, Aoki, Shigeki, additional, Shibui, Soichiro, additional, Matsutani, Masao, additional, Ishizawa, Keisuke, additional, Yokoo, Hideaki, additional, Suzuki, Hiroyoshi, additional, Morita, Satoshi, additional, Kato, Mamoru, additional, and Nishikawa, Ryo, additional

Published
2022
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8. Additional file 1 of Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model

Author

Ono, Hanako, Arai, Yasuhito, Furukawa, Eisaku, Narushima, Daichi, Matsuura, Tetsuya, Nakamura, Hiromi, Shiokawa, Daisuke, Nagai, Momoko, Imai, Toshio, Mimori, Koshi, Okamoto, Koji, Hippo, Yoshitaka, Shibata, Tatsuhiro, and Kato, Mamoru

Abstract

Additional file 1: Figure S1. Aberrations in known cancer-related genes. Figure S2. Quality control check of single-cell transcriptome sequencing data. Figure S3. cCV and highly variable genes. Figure S4. Determination of gene and cell groups in single-cell RNA sequencing. Figure S5. Violin plots of the expression levels of the marker genes. Figure S6. Quality control check of single-cell exome sequencing data. Figure S7. Association with hypermutation type based on human cancer counterpart to our mouse model. Figure S8. Associations with histological type and microsatellite instability based on human cancer counterpart to our mouse model. Figure S9. Schematic representation of the culture experiment. Figure S10. Procedure for calculating expression levels and for calling SNVs in single-cell sequencing.

Published
2021
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9. Slow-Cycling Cancer Stem Cells Regulate Progression and Chemoresistance in Colon Cancer

Author

Shiokawa, Daisuke, primary, Sakai, Hiroaki, additional, Ohata, Hirokazu, additional, Miyazaki, Toshiaki, additional, Kanda, Yusuke, additional, Sekine, Shigeki, additional, Narushima, Daichi, additional, Hosokawa, Masahito, additional, Kato, Mamoru, additional, Suzuki, Yutaka, additional, Takeyama, Haruko, additional, Kambara, Hideki, additional, Nakagama, Hitoshi, additional, and Okamoto, Koji, additional

Published
2020
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10. ACTR-04. BIOMARK: A PHASE II STUDY OF BEVACIZUMAB BEYOND PROGRESSION FOR NEWLY DIAGNOSED GLIOBLASTOMA: SAFETY, EFFICACY AND PROSPECTIVE BIOMARKER ANALYSIS

Author

Ichimura, Koichi, primary, Nagane, Motoo, additional, Kato, Mamoru, additional, Narita, Yoshitaka, additional, Aoki, Tomokazu, additional, Tanaka, Shota, additional, Mukasa, Akitake, additional, Wakabayashi, Toshihiko, additional, Uzuka, Takeo, additional, Nakamura, Hideo, additional, Arakawa, Yoshiki, additional, Suehiro, Satoshi, additional, Nakada, Mitsutoshi, additional, Kitahara, Mai, additional, Hibiya, Yuko, additional, Narushima, Daichi, additional, Onuki, Ritsuko, additional, Morita, Satoshi, additional, and Nishikawa, Ryo, additional

Published
2019
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11. Additional file 12: of Significance of molecular classification of ependymomas: C11orf95-RELA fusion-negative supratentorial ependymomas are a heterogeneous group of tumors

Author

Fukuoka, Kohei, Yonehiro Kanemura, Shofuda, Tomoko, Fukushima, Shintaro, Yamashita, Satoshi, Narushima, Daichi, Kato, Mamoru, Honda-Kitahara, Mai, Ichikawa, Hitoshi, Kohno, Takashi, Sasaki, Atsushi, Hirato, Junko, Hirose, Takanori, Komori, Takashi, Kaishi Satomi, Yoshida, Akihiko, Yamasaki, Kai, Nakano, Yoshiko, Takada, Ai, Taishi Nakamura, Takami, Hirokazu, Matsushita, Yuko, Tomonari Suzuki, Nakamura, Hideo, Makino, Keishi, Sonoda, Yukihiko, Ryuta Saito, Teiji Tominaga, Matsusaka, Yasuhiro, Kobayashi, Keiichi, Nagane, Motoo, Furuta, Takuya, Nakada, Mitsutoshi, Narita, Yoshitaka, Hirose, Yuichi, Ohba, Shigeo, Wada, Akira, Shimizu, Katsuyoshi, Kurozumi, Kazuhiko, Date, Isao, Fukai, Junya, Miyairi, Yousuke, Kagawa, Naoki, Atsufumi Kawamura, Yoshida, Makiko, Nishida, Namiko, Wataya, Takafumi, Yamaoka, Masayoshi, Tsuyuguchi, Naohiro, Uda, Takehiro, Takahashi, Mayu, Yoshiteru Nakano, Akai, Takuya, Izumoto, Shuichi, Nonaka, Masahiro, Yoshifuji, Kazuhisa, Kodama, Yoshinori, Mano, Masayuki, Ozawa, Tatsuya, Ramaswamy, Vijay, Taylor, Michael, Ushijima, Toshikazu, Shibui, Soichiro, Yamasaki, Mami, Arai, Hajime, Sakamoto, Hiroaki, Nishikawa, Ryo, and Ichimura, Koichi

Abstract

Table S6. Univariate and multivariate analysis of ST and PF ependymomas in PFS and OS. (DOCX 44 kb)

Published
2018
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12. Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model

Author

Ono, Hanako, primary, Arai, Yasuhito, additional, Furukawa, Eisaku, additional, Narushima, Daichi, additional, Matsuura, Tetsuya, additional, Nakamura, Hiromi, additional, Shiokawa, Daisuke, additional, Nagai, Momoko, additional, Imai, Toshio, additional, Mimori, Koshi, additional, Okamoto, Koji, additional, Hippo, Yoshitaka, additional, Shibata, Tatsuhiro, additional, and Kato, Mamoru, additional

Published
2019
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13. Feasibility and utility of a panel testing for 114 cancer‐associated genes in a clinical setting: A hospital‐based study

Author

Sunami, Kuniko, primary, Ichikawa, Hitoshi, additional, Kubo, Takashi, additional, Kato, Mamoru, additional, Fujiwara, Yutaka, additional, Shimomura, Akihiko, additional, Koyama, Takafumi, additional, Kakishima, Hiroki, additional, Kitami, Mayuko, additional, Matsushita, Hiromichi, additional, Furukawa, Eisaku, additional, Narushima, Daichi, additional, Nagai, Momoko, additional, Taniguchi, Hirokazu, additional, Motoi, Noriko, additional, Sekine, Shigeki, additional, Maeshima, Akiko, additional, Mori, Taisuke, additional, Watanabe, Reiko, additional, Yoshida, Masayuki, additional, Yoshida, Akihiko, additional, Yoshida, Hiroshi, additional, Satomi, Kaishi, additional, Sukeda, Aoi, additional, Hashimoto, Taiki, additional, Shimizu, Toshio, additional, Iwasa, Satoru, additional, Yonemori, Kan, additional, Kato, Ken, additional, Morizane, Chigusa, additional, Ogawa, Chitose, additional, Tanabe, Noriko, additional, Sugano, Kokichi, additional, Hiraoka, Nobuyoshi, additional, Tamura, Kenji, additional, Yoshida, Teruhiko, additional, Fujiwara, Yasuhiro, additional, Ochiai, Atsushi, additional, Yamamoto, Noboru, additional, and Kohno, Takashi, additional

Published
2019
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