34 results on '"Natalie S. Shenker"'
Search Results
2. Understanding the current and future usage of donor human milk in hospitals: An online survey of UK neonatal units
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Natalie S. Shenker, Samantha Griffin, Jonathan Hamill‐Keays, Merran Thomson, Judith Simpson, and Gillian Weaver
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donor human milk ,equity ,neonatal unit ,operational planning ,service planning ,Pediatrics ,RJ1-570 ,Gynecology and obstetrics ,RG1-991 ,Nutritional diseases. Deficiency diseases ,RC620-627 - Abstract
Abstract The use of donor human milk (DHM) where there is a shortfall of maternal milk can benefit both infant and maternal outcomes but DHM supply is not always assured. This study aimed to understand current DHM usage in UK neonatal units and potential future demand to inform service planning. An online survey was disseminated to all UK neonatal units using Smart Survey or by telephone between February and April 2022 after development alongside neonatal unit teams. Surveys were completed by 55.4% of units (108/195) from all 13 Operational Delivery Networks. Only four units reported not using DHM, and another two units only if infants are transferred on DHM feeds. There was marked diversity in DHM implementation and usage and unit protocols varied greatly. Five of six units with their own milk bank had needed to source milk from an external milk bank in the last year. Ninety units (84.9%) considered DHM was sometimes (n = 35) or always (n = 55) supportive of maternal breastfeeding, and three units (2.9%) responded that DHM was rarely supportive of breastfeeding. Usage was predicted to increase by 37 units (34.9%), and this drive was principally a result of parental preference, clinical trials and improved evidence. These findings support the assumption that UK hospital DHM demand will increase after updated recommendations from the World Health Organization (WHO) and the British Association of Perinatal Medicine. These data will assist service delivery planning, underpinned by an ongoing programme of implementation science and training development, to ensure future equity of access to DHM nationally.
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- 2023
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3. Establishing a novel community-focussed lactation support service: a descriptive case series
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Samantha Griffin, Jo Watt, Sophie Wedekind, Solange Bramer, Yasmin Hazemi-Jebelli, Robert Boyle, Gillian Weaver, and Natalie S. Shenker
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Donor human milk ,Supplementation ,Breast cancer ,Surrogacy ,Perinatal mental health ,Milk bank ,Pediatrics ,RJ1-570 ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background Although breastfeeding is widely acknowledged as protecting both infant and maternal health postnatally, a partial or complete shortfall of maternal milk can occur for a range of reasons. In this eventuality, the currently available options for feeding infants are screened donor human milk (DHM), infant formula or unscreened shared human milk. In the UK, DHM has only been widely available in specific clinical contexts for the last 40 years, mainly to reduce the risk of necrotising enterocolitis in extremely preterm infants alongside optimal support for maternal lactation and breastfeeding. The Hearts Milk Bank (HMB) was established in 2017 as an independent, non-profit human milk bank that aimed to ensure equitable, assured access to screened DHM for neonatal units. As a result of the generosity of mothers, a surplus of DHM rapidly became available and together with lactation support, has since been provided to families with a healthcare referral. This programme has now been formalised for families facing lactational challenges, and DHM stocks are permanently maintained to meet their needs. Case series This case series describes the clinical paths of four families who accessed lactation support and DHM from the HMB, along with a description of the process for community provision. To date, the HMB has supported over 300 families. Working collaboratively with key stakeholders, the HMB team has developed a prioritisation strategy based on utilitarian ethical models, protocols that ensure safe handling and appropriateness of use, broader donor recruitment parameters that maintain safety with a pragmatic approach for full term healthy infants, and a process to ensure parents or carers have access to the knowledge needed to give informed consent and use DHM appropriately. Conclusions Stakeholders, including parents, healthcare professionals, and milk banks, will need to discuss priorities for both DHM use and research gaps that can underpin the equitable expansion of services, in partnership with National Health Service (NHS) teams and third-sector organisations that support breastfeeding and maternal mental health.
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- 2022
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4. Are the doctors of the future ready to support breastfeeding? A cross-sectional study in the UK
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Kirsty V. Biggs, Katy J. Fidler, Natalie S. Shenker, and Heather Brown
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Medical education ,Breastfeeding ,Clinical skills ,Medical training ,Pediatrics ,RJ1-570 ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background Currently there is no published data on the inclusion of breastfeeding education within the UK medical school curriculum. This study aims to address this knowledge gap and explore students’ perceptions of their readiness to support breastfeeding. Methods An online survey was used to collect data from 32 UK undergraduate medical schools and their students. All students in their final two years of study at the 30 universities offering a 5- or 6-year medicine course, were eligible. Results Curriculum data was obtained from 26 (81%) institutions. Compulsory breastfeeding education was provided by 85% (N = 22) institutions with 81% (n = 21) providing lecture-based teaching and 19% (n = 5) offering formal clinical education. Overall, 411 students from 22 institutions participated. A moderate ability to identify the benefits of breastfeeding was observed; however, self-rated confidence in practical skills was poor. Assisting with latching was the least confident skill, with confidence in only 3% (14/411) students. Most students (93%) viewed doctors as playing an important role in breastfeeding, with those interested in either women’s health, paediatrics or general practice perceiving the role of doctors as more important. Overall, 93% (381/411) students requested further breastfeeding education. Conclusions This study suggests UK medical schools are not adequately preparing students to support breastfeeding patients. Further studies should explore the competency of doctors to meet the needs of lactating women, and design optimal training for UK medical students.
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- 2020
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5. Human Milk from Tandem Feeding Dyads Does Not Differ in Metabolite and Metataxonomic Features When Compared to Single Nursling Dyads under Six Months of Age
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Natalie S. Shenker, Alvaro Perdones-Montero, Adam Burke, Sarah Stickland, Julie A. K. McDonald, and Simon J. S. Cameron
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human milk ,lactation ,metabolome ,breastfeeding ,infant feeding ,microbiome ,Microbiology ,QR1-502 - Abstract
Given the long-term advantages of exclusive breastfeeding to infants and their mothers, there is both an individual and public health benefit to its promotion and support. Data on the composition of human milk over the course of a full period of lactation for a single nursling is sparse, but data on human milk composition during tandem feeding (feeding children of different ages from different pregnancies) is almost entirely absent. This leaves an important knowledge gap that potentially endangers the ability of parents to make a fully informed choice on infant feeding. We compared the metataxonomic and metabolite fingerprints of human milk samples from 15 tandem feeding dyads to that collected from ten exclusively breastfeeding single nursling dyads where the nursling is under six months of age. Uniquely, our cohort also included three tandem feeding nursling dyads where each child showed a preferential side for feeding—allowing a direct comparison between human milk compositions for different aged nurslings. Across our analysis of volume, total fat, estimation of total microbial load, metabolite fingerprinting, and metataxonomics, we showed no statistically significant differences between tandem feeding and single nursling dyads. This included comparisons of preferential side nurslings of different ages. Together, our findings support the practice of tandem feeding of nurslings, even when feeding an infant under six months.
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- 2022
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6. Antiviral Properties of Human Milk
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Sophie I. S. Wedekind and Natalie S. Shenker
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lactation ,global health ,therapeutics ,viruses ,Biology (General) ,QH301-705.5 - Abstract
Humans have always coexisted with viruses, with both positive and negative consequences. Evolutionary pressure on mammals has selected intrinsic properties of lactation and milk to support the relatively immunocompromised neonate from environmental pathogens, as well as support the normal development of diverse immune responses. Human milk supports both adaptive and innate immunity, with specific constituents that drive immune learning and maturation, and direct protection against microorganisms. Viruses constitute one of the most ancient pressures on human evolution, and yet there is a lack of awareness by both public and healthcare professionals of the complexity of human milk as an adaptive response beyond the production of maternal antibodies. This review identifies and describes the specific antiviral properties of human milk and describes how maternal support of infants through lactation is protective beyond antibodies.
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- 2021
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7. Breastfeeding and the origins of health: Interdisciplinary perspectives and priorities
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Daniel Munblit, Meredith Brockway, Christina D. Chambers, Nathan C. Nickel, Amy Brown, Aloka L. Patel, Natalie S. Shenker, Bridget E. Young, Michelle K. McGuire, Luisa Zuccolo, Rafael Pérez-Escamilla, Camie Goldhammer, Meghan B. Azad, Lars Bode, Kathleen M. Rasmussen, and Katie Hinde
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0301 basic medicine ,infant feeding ,Research areas ,breastfeeding ,conflict of interest ,Breastfeeding ,breastmilk ,Population health ,lactation ,lcsh:Gynecology and obstetrics ,Denialism ,03 medical and health sciences ,0302 clinical medicine ,Multidisciplinary approach ,Knowledge translation ,Medicine ,research methodology ,Humans ,030212 general & internal medicine ,lcsh:RC620-627 ,lcsh:RG1-991 ,030109 nutrition & dietetics ,Nutrition and Dietetics ,Nutrition & Dietetics ,Milk, Human ,business.industry ,Public Health, Environmental and Occupational Health ,Conflict of interest ,lcsh:RJ1-570 ,Obstetrics and Gynecology ,Infant ,human milk ,lcsh:Pediatrics ,Public relations ,lcsh:Nutritional diseases. Deficiency diseases ,Milk ,Breast Feeding ,Action plan ,Pediatrics, Perinatology and Child Health ,Perspective ,Female ,business ,Human ,Perspectives - Abstract
Breastfeeding and human milk (HM) are critically important to maternal, infant and population health. This paper summarizes the proceedings of a workshop that convened a multidisciplinary panel of researchers to identify key priorities and anticipated breakthroughs in breastfeeding and HM research, discuss perceived barriers and challenges to achieving these breakthroughs and propose a constructive action plan to maximize the impact of future research in this field. Priority research areas identified were as follows: (1) addressing low breastfeeding rates and inequities using mixed methods, community partnerships and implementation science approaches; (2) improving awareness of evidence‐based benefits, challenges and complexities of breastfeeding and HM among health practitioners and the public; (3) identifying differential impacts of alternative modes of HM feeding including expressed/pumped milk, donor milk and shared milk; and (4) developing a mechanistic understanding of the health effects of breastfeeding and the contributors to HM composition and variability. Key barriers and challenges included (1) overcoming methodological limitations of epidemiological breastfeeding research and mechanistic HM research; (2) counteracting ‘breastfeeding denialism’ arising from negative personal breastfeeding experiences; (3) distinguishing and aligning research and advocacy efforts; and (4) managing real and perceived conflicts of interest. To advance research on breastfeeding and HM and maximize the reach and impact of this research, larger investments are needed, interdisciplinary collaboration is essential, and the scientific community must engage families and other stakeholders in research planning and knowledge translation.
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- 2021
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8. Use of donor human milk in nonhospitalized infants: An infant growth study
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Solange Bramer, Natalie S. Shenker, Gillian Weaver, Robert J. Boyle, and Medical Research Council (MRC)
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0301 basic medicine ,Pediatrics ,breastfeeding ,Breastfeeding ,HOLDER PASTEURIZATION ,0302 clinical medicine ,Prospective Studies ,030212 general & internal medicine ,Prospective cohort study ,lcsh:RC620-627 ,infant growth ,Nutrition and Dietetics ,MOTHERS ,lcsh:RJ1-570 ,human milk ,Obstetrics and Gynecology ,lcsh:Nutritional diseases. Deficiency diseases ,Breast Feeding ,Tolerability ,NURSERY ,Original Article ,Female ,Life Sciences & Biomedicine ,medicine.medical_specialty ,milk banks ,infant feeding ,growth ,lcsh:Gynecology and obstetrics ,Growth velocity ,03 medical and health sciences ,Intensive Care Units, Neonatal ,medicine ,Humans ,Milk Banks ,Adverse effect ,lcsh:RG1-991 ,Retrospective Studies ,FORMULA ,Science & Technology ,030109 nutrition & dietetics ,Nutrition & Dietetics ,Milk, Human ,business.industry ,feeding problems ,Infant, Newborn ,Public Health, Environmental and Occupational Health ,Infant ,lcsh:Pediatrics ,Retrospective cohort study ,Original Articles ,Infant formula ,Pediatrics, Perinatology and Child Health ,1111 Nutrition and Dietetics ,CESSATION ,business - Abstract
When mother's own milk (MOM) is unavailable or insufficient, donor human milk (DHM) is recommended as the next best alternative for low birthweight infants. DHM use for healthy, term infants is increasing, but evidence for growth and tolerability is limited. This retrospective study evaluated growth in term infants in the community who received DHM from a UK milk bank. Mothers of infants receiving DHM between 2017 and 2019 were contacted (n = 49), and 31 (63.2%) agreed to participate. Fourteen infants received DHM as a supplement to other feeds (MOM and/or infant formula) and 17 were exclusively fed DHM where breastfeeding was impossible (range: 3–6 weeks). Growth was assessed by deriving z‐scores using the WHO standard for infant growth and compared with 200 exclusively breastfed infants. Multivariate regression analysis revealed no feeding method‐specific association between z‐score and age, nor between weight and age, suggesting that z‐scores and growth velocity were not affected by feeding exclusive MOM, supplemental DHM or exclusive DHM. DHM was well‐tolerated with no adverse events that led to early cessation. After receiving supplemental DHM group, 63% of infants whose mothers had no physical barrier to breastfeeding (5/8 infants) were exclusively breastfed. This novel study reports adequate growth outcomes of healthy nonhospitalized infants receiving DHM, either as the sole milk source or supplement. Prospective studies are needed to confirm whether DHM is a suitable feeding alternative for term infants in the community, optimal durations, as well as the impact of DHM availability on breastfeeding rates and maternal mental health., DHM recipients were compared with the who infant growth standard (World Health Organization, 2020) by deriving z‐scores. The WHO Anthro Macro (World Health Organization, 2011 ) was used to calculate weight‐for‐age, length‐for‐age and head circumference‐for‐age z‐scores; z‐scores are the standard deviation of an infant's anthropometric measurements when compared with the WHO standard for infant growth and are gender and age specific.
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- 2021
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9. Maintaining human milk bank services throughout the COVID-19 pandemic: A global response
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Mohammad Bagher Hosseini, Johannes B. van Goudoever, Marta Staff, Joao Aprigio, Penny Reimers, Vanessa Clifford, Kiersten Israel-Ballard, Ruchika Chugh Sachdeva, Gillian Weaver, Daniel Klotz, Amy Vickers, Satish Tiwari, Anne Grovslien, Aleksandra Wesołowska, Sushma Nangia, Radmila Mileusnic-Milenovic, Anna Coutsoudis, Natalie S. Shenker, Kimberly Mansen, Associations, and Medical Research Council (MRC)
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0301 basic medicine ,breastfeeding ,Collaborative network ,Human milk bank ,Breastfeeding ,Pediatrics ,0302 clinical medicine ,RESPIRATORY SYNDROME CORONAVIRUS ,Pandemic ,Obstetrics and Gynaecology ,donor human milk ,Medicine ,BREAST-MILK ,030212 general & internal medicine ,Nutritional diseases. Deficiency diseases ,Nutrition and Dietetics ,milk bank ,Obstetrics and Gynecology ,Benchmarking ,DONOR HUMAN-MILK ,Breast Feeding ,nutrition ,INACTIVATION ,Female ,Original Article ,Life Sciences & Biomedicine ,RC620-627 ,infant feeding ,Virtual Collaborative Network of Milk Banks and Associations ,Context (language use) ,RJ1-570 ,03 medical and health sciences ,COVID‐19 ,Environmental health ,Humans ,Pediatrics, Perinatology, and Child Health ,Milk Banks ,Pandemics ,Contingency plan ,030109 nutrition & dietetics ,Science & Technology ,Nutrition & Dietetics ,STABILITY ,Milk, Human ,business.industry ,SARS-CoV-2 ,pandemic ,prematurity ,Public Health, Environmental and Occupational Health ,Infant, Newborn ,COVID-19 ,Infant ,Gynecology and obstetrics ,Original Articles ,Pediatrics, Perinatology and Child Health ,RG1-991 ,1111 Nutrition and Dietetics ,business - Abstract
If maternal milk is unavailable, the World Health Organization recommends that the first alternative should be pasteurised donor human milk (DHM). Human milk banks (HMBs) screen and recruit milk donors, and DHM principally feeds very low birth weight babies, reducing the risk of complications and supporting maternal breastfeeding where used alongside optimal lactation support. The COVID‐19 pandemic has presented a range of challenges to HMBs worldwide. This study aimed to understand the impacts of the pandemic on HMB services and develop initial guidance regarding risk limitation. A Virtual Collaborative Network (VCN) comprising over 80 HMB leaders from 36 countries was formed in March 2020 and included academics and nongovernmental organisations. Individual milk banks, national networks and regional associations submitted data regarding the number of HMBs, volume of DHM produced and number of recipients in each global region. Estimates were calculated in the context of missing or incomplete data. Through open‐ended questioning, the experiences of milk banks from each country in the first 2 months of the pandemic were collected and major themes identified. According to data collected from 446 individual HMBs, more than 800,000 infants receive DHM worldwide each year. Seven pandemic‐related specific vulnerabilities to service provision were identified, including sufficient donors, prescreening disruption, DHM availability, logistics, communication, safe handling and contingency planning, which were highly context‐dependent. The VCN now plans a formal consensus approach to the optimal response of HMBs to new pathogens using crowdsourced data, enabling the benchmarking of future strategies to support DHM access and neonatal health in future emergencies.
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- 2020
10. Metabolomic and Metataxonomic Fingerprinting of Human Milk Suggests Compositional Stability over a Natural Term of Breastfeeding to 24 Months
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Sarah Stickland, James M. Flanagan, Adam Burke, Alvaro Perdones-Montero, Julie A. K. McDonald, Kate Alexander-Hardiman, Natalie S. Shenker, Zoltan Takats, and Simon J S Cameron
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0301 basic medicine ,Adult ,Metabolite ,Breastfeeding ,Physiology ,Mothers ,lcsh:TX341-641 ,Composition analysis ,Biology ,metataxonomics ,Article ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Metabolomics ,metabolomic fingerprinting ,Age groups ,030225 pediatrics ,Lactation ,RNA, Ribosomal, 16S ,medicine ,Humans ,Microbiome ,Bacteriological Techniques ,Nutrition and Dietetics ,Bacteria ,Milk, Human ,Microbiota ,human milk ,030104 developmental biology ,Lifestyle factors ,medicine.anatomical_structure ,Breast Feeding ,chemistry ,Female ,lcsh:Nutrition. Foods and food supply ,Food Science - Abstract
Sparse data exist regarding the normal range of composition of maternal milk beyond the first postnatal weeks. This single timepoint, observational study in collaboration with the &lsquo, Parenting Science Gang&rsquo, citizen science group evaluated the metabolite and bacterial composition of human milk from 62 participants (infants aged 3&ndash, 48 months), nearly 3 years longer than previous studies. We utilised rapid evaporative ionisation mass spectrometry (REIMS) for metabolic fingerprinting and 16S rRNA gene metataxonomics for microbiome composition analysis. Milk expression volumes were significantly lower beyond 24 months of lactation, but there were no corresponding changes in bacterial load, composition, or whole-scale metabolomic fingerprint. Some individual metabolite features (~14%) showed altered abundances in nursling age groups above 24 months. Neither milk expression method nor nursling sex affected metabolite and metataxonomic fingerprints. Self-reported lifestyle factors, including diet and physical traits, had minimal impact on metabolite and metataxonomic fingerprints. Our findings suggest remarkable consistency in human milk composition over natural-term lactation. The results add to previous studies suggesting that milk donation can continue up to 24 months postnatally. Future longitudinal studies will confirm the inter-individual and temporal nature of compositional variations and the use of donor milk as a personalised therapeutic.
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- 2020
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11. Maintaining safety and service provision in human milk banking:a call to action in response to the COVID-19 pandemic
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Penny Reimers, Tanya Cassidy, Faith Njeru, Jenny Wright, Mohammad Heidarzadeh, Satish Tiwari, Gillian Opie, Anna Coutsoudis, Annika Tiit-Vesingi, Anne Bærug, Pratibha Kale, Roger Mathisen, Gillian Weaver, Ruchika Chugh Sachdeva, Frances Jones, Johannes B. van Goudoever, Suchandra Mukherjee, Janette Festival, Sertac Arslanoglu, Guido E. Moro, Rachel Buffin, Nant San San Aye, Estrella J. Olonan-Jusi, Ketan Bharadva, Mohammad Bagher Hosseini, Maryam Saboute, Li Jung Fang, Josefin Lundstrom, Jai Singh, Natalie S. Shenker, Suksham Jain, Angela Kithua, Roopa Bellad, Jackie Hughes, Aunchalee E. L. Palmquist, Anthea Franks, Sybil Sanchez, Sushma Nangia, Marta Staff, Nadia Raquel García-Lara, Laura D Klein, Pauline Sakamoto, Mary Waiyego, Andreja Domjan, Kimberly Mansen, Xihong Liu, Zaw Win Moe, Anne Grovslien, Vanessa Clifford, Poonam Singh, Yungchieh Lin, Debbie Barnett, Lindsay Groff, Adhisivam Bethou, Kiersten Israel-Ballard, San San Myint, Anne Bille Olin, Himabindu Singh, Selvaraj Jayaraman, Radmila Mileusnic-Milenovic, Kajal Jain, Naomi Bar Yam, Claude Billeaud, Joao Aprigio, Sila Deb, Tran Thi Hoang, Daniel Klotz, Aleksandra Wesołowska, Amy Vickers, Andreas Malzacher, Erin Hamilton Spence, Branka Golubiú-Úepuliú, Antoni Gayà, Laraine Lockhart Borman, Enrico Bertino, Jayendra Kasar, Christine Sulfaro, Sopapan Ngerncham, Medical Research Council (MRC), Pediatric surgery, ACS - Diabetes & metabolism, AGEM - Endocrinology, metabolism and nutrition, Amsterdam Reproduction & Development (AR&D), Neonatology, AGEM - Digestive immunity, AGEM - Amsterdam Gastroenterology Endocrinology Metabolism, and ARD - Amsterdam Reproduction and Development
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2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,Service provision ,Pneumonia, Viral ,Pediatrics ,Article ,Betacoronavirus ,Pandemic ,Developmental and Educational Psychology ,Humans ,Pediatrics, Perinatology, and Child Health ,Milk Banks ,Pandemics ,Finance ,Science & Technology ,Milk, Human ,SARS-CoV-2 ,business.industry ,COVID-19 ,Call to action ,Milk banking ,Pediatrics, Perinatology and Child Health ,Business ,Coronavirus Infections ,Life Sciences & Biomedicine ,Virtual Collaborative Network of Human Milk Banks and Associations - Published
- 2020
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12. Undermining breastfeeding will not alleviate the COVID-19 pandemic
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Johannes B. van Goudoever, Aleksandra Wesołowska, Daniel Klotz, Natalie S. Shenker, Sushma Nangia, Neonatology, Amsterdam Gastroenterology Endocrinology Metabolism, and Amsterdam Reproduction & Development (AR&D)
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2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,Pneumonia, Viral ,Breastfeeding ,Severe Acute Respiratory Syndrome ,Betacoronavirus ,Correspondence ,Pandemic ,Humans ,Medicine ,Pandemics ,Milk, Human ,biology ,SARS-CoV-2 ,business.industry ,COVID-19 ,General Medicine ,biology.organism_classification ,medicine.disease ,Virology ,Pneumonia ,Breast Feeding ,Female ,Coronavirus Infections ,business ,Breast feeding - Published
- 2020
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13. Support for breastfeeding is an environmental imperative
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Flic Webster, Naomi Joffe, Natalie S. Shenker, and Medical Research Council (MRC)
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FOOTPRINT ,Conservation of Natural Resources ,Science & Technology ,MEDLINE ,Breastfeeding ,Mothers ,Social Support ,1103 Clinical Sciences ,General Medicine ,Infant Formula ,Bottle Feeding ,1117 Public Health and Health Services ,Social support ,Medicine, General & Internal ,Biodegradation, Environmental ,Breast Feeding ,Nursing ,General & Internal Medicine ,Humans ,Female ,Business ,Life Sciences & Biomedicine - Published
- 2019
14. Using donor human milk to feed vulnerable term infants: a case series in KwaZulu Natal, South Africa
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Natalie S. Shenker, Penelope Reimers, Gillian Weaver, and Anna Coutsoudis
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CHILDHOOD ,Breastfeeding ,Human immunodeficiency virus (HIV) ,CHILDREN ,1110 Nursing ,Case Report ,Breast milk ,medicine.disease_cause ,Pediatrics ,03 medical and health sciences ,fluids and secretions ,0302 clinical medicine ,030225 pediatrics ,Environmental health ,Medicine ,030212 general & internal medicine ,Case series ,METAANALYSIS ,Anecdotal evidence ,Science & Technology ,business.industry ,lcsh:Public aspects of medicine ,Incidence (epidemiology) ,Medical record ,lcsh:RJ1-570 ,Obstetrics & Gynecology ,Obstetrics and Gynecology ,food and beverages ,HIV ,lcsh:Pediatrics ,lcsh:RA1-1270 ,Atopic dermatitis ,Failure to thrive ,medicine.disease ,Fullterm infants ,1117 Public Health And Health Services ,Pediatrics, Perinatology and Child Health ,Donor human milk ,medicine.symptom ,business ,Life Sciences & Biomedicine - Abstract
Background Donor human milk is the World Health Organization’s recommendation for infant feeding when the mother’s own breast milk is unavailable. Breast milk has been shown to reduce morbidity and mortality and in low birthweight infants, donor milk reduces the incidence of necrotising enterocolitis, late onset sepsis and improves outcomes. There is a paucity of literature documenting outcomes of using donor human milk in older children who need additional support for a variety of health issues. Case presentation A series of seven case studies is presented of orphaned and abandoned children, many of whom were either HIV exposed or positive. All children were fed with pasteurised donor human milk at a transition home and their progress reported. Conclusions Although detailed medical records were not always available, the case studies provide anecdotal evidence of the protective effects of donor human milk against failure to thrive, diarrhoea, atopic dermatitis, and opportunistic infections.
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- 2018
15. High aortic pulse wave velocity is associated with poor quality of life in surgical aortic valve stenosis patients
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Thanos Athanasiou, Hutan Ashrafian, Emaddin Kidher, Natalie S. Shenker, Darrel P. Francis, Jamil Mayet, Petros Nihoyannopoulos, and Leanne Harling
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Male ,Pulmonary and Respiratory Medicine ,Aortic valve ,medicine.medical_specialty ,Visual analogue scale ,Pulse Wave Analysis ,Risk Assessment ,Severity of Illness Index ,Decision Support Techniques ,Vascular Stiffness ,Quality of life ,Aortic valve replacement ,Predictive Value of Tests ,Risk Factors ,Surveys and Questionnaires ,Internal medicine ,medicine ,Humans ,cardiovascular diseases ,Pulse wave velocity ,Aorta ,Aged ,Aged, 80 and over ,Heart Valve Prosthesis Implantation ,business.industry ,Aortic Valve Stenosis ,Middle Aged ,medicine.disease ,Surgery ,Treatment Outcome ,medicine.anatomical_structure ,Aortic valve stenosis ,Multivariate Analysis ,Quality of Life ,cardiovascular system ,Arterial stiffness ,Cardiology ,Female ,Aortic stiffness ,Cardiology and Cardiovascular Medicine ,business ,circulatory and respiratory physiology - Abstract
OBJECTIVES: Aortic stiffness is an emerging risk factor for cardiovascular disease. The predictive value of aortic pulse wave velocity (PWV) for quality of life (QoL) and severity of surgical aortic valve stenosis (AS) have not been examined. METHODS: PWV was measured in patients undergoing aortic valve replacement (AVR) for AS. QoL [SF-36 and European QoL 5-dimensions (EQ-5D) questionnaires] was assessed pre- and postoperatively (409 ± 159 days). PWV was analysed: (i) as a continuous variable and (ii) as a dichotomous variable (PWV-norm and PWV-high groups) according to the published normal reference value. RESULTS: Fifty-six patients (16 females), mean age of 71 ± 8.4 years, were included, and 50 (89%) patients completed follow-up. The two groups were matched for age, gender and classical haemodynamic measurements. There was no significant relation between AS severity and PWV. PWV-norm patients (n= 35) scored significantly better than PWV-high (n= 21) patients in the EQ-5D visual analogue scale and the EQ-5D index pre- (P< 0.001 and P= 0.03, respectively) and postoperatively (P< 0.001 for both). In SF-36, PWV-norm group scored better than PWV-high group in physical health domains preoperatively and in all domains postoperatively. Spearman’s correlation was significant between PWV and QoL component summaries pre- and postoperatively. Among PWV, age and gender, multiple regression analysis demonstrated PWV to be independently related to QoL pre- and postoperatively (P-values ranged from
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- 2014
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16. DNA Methylation as a Long-term Biomarker of Exposure to Tobacco Smoke
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Per Magne Ueland, Natalie S. Shenker, James M. Flanagan, Paolo Vineis, Silvia Polidoro, Robert S. Brown, Fulvio Ricceri, and Karin van Veldhoven
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Male ,Time Factors ,Epidemiology ,Physiology ,Tobacco smoke ,Nicotine ,chemistry.chemical_compound ,Surveys and Questionnaires ,Humans ,Medicine ,Prospective Studies ,Epigenetics ,Cotinine ,business.industry ,Smoking ,Reproducibility of Results ,Methylation ,DNA Methylation ,chemistry ,DNA methylation ,Pyrosequencing ,Biomarker (medicine) ,Female ,business ,Biomarkers ,medicine.drug - Abstract
Background Most biomarkers of exposure tend to have short half-lives. This includes cotinine, a metabolite of nicotine widely used to assess smoke exposure. Cotinine is thus unsuitable as a determinant of past exposure to cigarette smoke. Methods We used bisulphite pyrosequencing of a set of four genomic loci (AHRR, 6p21, and two at 2q37) that had differential DNA methylation levels in peripheral blood DNA dependent on tobacco exposure to create a predictive model of smoking status. Results Combining four gene loci into a single methylation index provided high positive predictive and sensitivity values for predicting former smoking status in both test (n = 81) and validation (n = 180) sample sets. Conclusions This study provides a direct molecular measure of prior exposure to tobacco that can be performed using the quantitative approach of bisulphite pyrosequencing. Epigenetic changes that are detectable in blood may more generally act as molecular biomarkers for other exposures that are also difficult to quantify in epidemiological studies.
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- 2013
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17. Intragenic DNA methylation: implications of this epigenetic mechanism for cancer research
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Natalie S. Shenker, James M. Flanagan, and Breast Cancer Now
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Cancer Research ,GENES ,CPG-ISLANDS ,Biology ,Epigenesis, Genetic ,PROMOTERS ,Epigenetics of physical exercise ,breast cancer ,Neoplasms ,Histone methylation ,Animals ,Humans ,TRANSCRIPTION ,Oncology & Carcinogenesis ,Epigenetics ,Cancer epigenetics ,RNA-Directed DNA Methylation ,Epigenomics ,Genetics ,Regulation of gene expression ,Science & Technology ,DNA methylation ,epigenetics ,HUMAN-CELLS ,WIDE ,intragenic ,BODY-SPECIFIC METHYLATION ,REGIONS ,GENOME ,Oncology ,gene-body ,Minireview ,LANDSCAPES ,Life Sciences & Biomedicine ,1112 Oncology And Carcinogenesis - Abstract
Epigenetics is the study of all mechanisms that regulate gene transcription and genome stability that are maintained throughout the cell division, but do not include the DNA sequence itself. The best-studied epigenetic mechanism to date is DNA methylation, where methyl groups are added to the cytosine base within cytosine–guanine dinucleotides (CpG sites). CpGs are frequently clustered in high density (CpG islands (CGIs)) at the promoter of over half of all genes. Current knowledge of transcriptional regulation by DNA methylation centres on its role at the promoter where unmethylated CGIs are present at most actively transcribed genes, whereas hypermethylation of the promoter results in gene repression. Over the last 5 years, research has gradually incorporated a broader understanding that methylation patterns across the gene (so-called intragenic or gene body methylation) may have a role in transcriptional regulation and efficiency. Numerous genome-wide DNA methylation profiling studies now support this notion, although whether DNA methylation patterns are a cause or consequence of other regulatory mechanisms is not yet clear. This review will examine the evidence for the function of intragenic methylation in gene transcription, and discuss the significance of this in carcinogenesis and for the future use of therapies targeted against DNA methylation.
- Published
- 2011
18. The resurgent influence of big formula
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Natalie S. Shenker
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03 medical and health sciences ,0302 clinical medicine ,business.industry ,030225 pediatrics ,Medicine ,030212 general & internal medicine ,General Medicine ,business ,Data science - Published
- 2018
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19. Neonatal survival of prenatally diagnosed exomphalos
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Natalie S. Shenker, Kokila Lakhoo, G. Patel, Lawrence Impey, and J. Sadiq
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medicine.medical_specialty ,Omphalocele ,Obstetrics ,business.industry ,Incidence (epidemiology) ,Neonatal survival ,Infant, Newborn ,Reproducibility of Results ,Prenatal diagnosis ,General Medicine ,medicine.disease ,Ultrasonography, Prenatal ,United Kingdom ,Sepsis ,Pregnancy ,In utero ,Pediatrics, Perinatology and Child Health ,Pediatric surgery ,medicine ,Humans ,Gestation ,Female ,Surgery ,business ,Hernia, Umbilical - Abstract
Exomphalos is a midline defect, with a viable sac composed of amnion and peritoneum containing herniated abdominal contents with an incidence of about 1 in 4,000 live births. Associated major abnormalities can be karyotypic, syndromic or structural in up to 70% of cases. The aim of this study is to determine the factors that influence survival of antenatally diagnosed exomphalos. All antenatally diagnosed and postnatally confirmed exomphalos registered with our fetal medicine unit, during 2002–2007, were reviewed. Both prenatal and postnatal outcomes were analysed. Of 88 cases identified with exomphalos, 85 were prenatally diagnosed. Fifty-five of them died in utero (45 terminations, 5 spontaneous abortions and 5 still births). There were 33 live births (37.5%), 7 of which were premature (30–35/40 gestation). Five babies died before coming to surgery (all with major exomphalos as well as abnormal karyotype) while 28 were operated upon. Fourteen cases with minor exomphalos, all isolated, were primarily closed and all survived to discharge. Of 14 babies with major exomphalos, 4 were closed primarily. Nine required silo formation and six successfully underwent secondary closure (one of which had a prenatal diagnosis of giant ruptured exomphalos). Three died before closure, two from sepsis and multi-organ failure, and one from an undiagnosed tracheo-oesophalgeal cleft. All three deaths had antenatally diagnosed giant ruptured exomphalos and were less than 34/40 weeks gestation. One baby was managed conservatively with antiseptic solution applied to the sac and left to heal by secondary intention. There were 17 cases of isolated exomphalos (with no other structural abnormalities), all of which survived. Antenatal diagnosis of exomphalos is 96% sensitive. Severe karyotypic and structural abnormalities were present in all intra-uterine and early postnatal deaths. Overall survival to discharge was 28%. Both minor and isolated exomphalos carried a good prognosis. Isolated exomphalos was a better prognostic factor than severity of the exomphalos itself. Ruptured giant exomphalos were associated with a poorer outcome especially in premature babies.
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- 2009
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20. DNA methylation profiling to assess pathogenicity of BRCA1 unclassified variants in breast cancer
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Kirsty J, Flower, Natalie S, Shenker, Mona, El-Bahrawy, David E, Goldgar, Michael T, Parsons, Amanda B, Spurdle, Joanna R, Morris, Robert, Brown, and James M, Flanagan
- Subjects
Genetic Markers ,variants ,DNA Mutational Analysis ,Genes, BRCA1 ,Computational Biology ,Breast Neoplasms ,DNA Methylation ,BRCA1 ,breast cancer ,Humans ,Female ,Genetic Predisposition to Disease ,methylation ,skin and connective tissue diseases ,epigenetic ,Research Paper - Abstract
Germline pathogenic mutations in BRCA1 increase risk of developing breast cancer. Screening for mutations in BRCA1 frequently identifies sequence variants of unknown pathogenicity and recent work has aimed to develop methods for determining pathogenicity. We previously observed that tumor DNA methylation can differentiate BRCA1-mutated from BRCA1-wild type tumors. We hypothesized that we could predict pathogenicity of variants based on DNA methylation profiles of tumors that had arisen in carriers of unclassified variants. We selected 150 FFPE breast tumor DNA samples [47 BRCA1 pathogenic mutation carriers, 65 BRCAx (BRCA1-wild type), 38 BRCA1 test variants] and analyzed a subset (n=54) using the Illumina 450K methylation platform, using the remaining samples for bisulphite pyrosequencing validation. Three validated markers (BACH2, C8orf31, and LOC654342) were combined with sequence bioinformatics in a model to predict pathogenicity of 27 variants (independent test set). Predictions were compared with standard multifactorial likelihood analysis. Prediction was consistent for c.5194-12G>A (IVS 19-12 G>A) (P>0.99); 13 variants were considered not pathogenic or likely not pathogenic using both approaches. We conclude that tumor DNA methylation data alone has potential to be used in prediction of BRCA1 variant pathogenicity but is not independent of estrogen receptor status and grade, which are used in current multifactorial models to predict pathogenicity.
- Published
- 2016
21. The anatomy of the cremaster muscle during inguinoscrotal testicular descent in the rat
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Angelika F. Na, Natalie S. Shenker, Efrant J. Harnaen, Magdy Sourial, Pamela J. Farmer, Bridget R. Southwell, and John M. Hutson
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Male ,medicine.drug_class ,Inguinal Canal ,Sensitivity and Specificity ,Flutamide ,Rats, Sprague-Dawley ,Masson's trichrome stain ,Random Allocation ,chemistry.chemical_compound ,Pregnancy ,Reference Values ,Cryptorchidism ,Testis ,Scrotum ,medicine ,Animals ,Myocyte ,Abdominal Muscles ,Spermatic Cord ,Gubernaculum ,business.industry ,General Medicine ,Anatomy ,Androgen ,Rats ,Disease Models, Animal ,medicine.anatomical_structure ,Animals, Newborn ,chemistry ,Pediatrics, Perinatology and Child Health ,Cremaster muscle ,Female ,Surgery ,Desmin ,business - Abstract
Background Extrapolation of rat testicular descent studies to humans has been criticized because of anatomical differences of the cremaster muscle. Human cremaster is described as a thin strip rather than a large, complete sac as in rats, which is proposed to be more important in propelling the testis during descent. This study investigated cremaster muscle anatomy and ontogeny in both normal and cryptorchid rat models. Methods Gubernacula from 4 groups of neonatal rats were sectioned longitudinally and transversely: normal Sprague-Dawley, capsaicin pretreated, flutamide pretreated, and congenital cryptorchid rats. Gubernacula were stained with hematoxylin-eosin, Masson trichrome, and desmin immunohistochemistry to study muscle development. Results Myoblasts are more numerous at the gubernacular tip, whereas the most differentiated muscle is proximal. Rat cremaster develops as an elongated strip rather than a complete sac derived from abdominal wall muscles. Flutamide and capsaicin pretreatment disrupts development. Conclusion Rat cremaster muscle develops as a strip, bearing close resemblance to human cremaster muscle, permitting extrapolation of cremaster function to human testicular descent. The cremaster muscle appears to differentiate from the gubernacular tip during elongation to the scrotum, and requires intact sensory innervation and androgen.
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- 2007
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22. John Hilton (1805–78): anatomist and surgeon
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Harold Ellis and Natalie S. Shenker
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medicine.medical_specialty ,Eponyms ,Faculty, Medical ,business.industry ,Dissection ,General surgery ,education ,Medicine (miscellaneous) ,History, 19th Century ,Clinical anatomy ,United Kingdom ,humanities ,Surgery ,History and Philosophy of Science ,General Surgery ,Anatomical knowledge ,medicine ,Humans ,Anatomy ,business ,Schools, Medical ,Clinical skills - Abstract
John Hilton was the foremost anatomist of his day. From only humble beginnings he became an anatomy demonstrator at Guy's Hospital. When appointed Surgeon to Guy's Hospital, his meticulous clinical skills, arising from his depth of anatomical knowledge, led him to develop many anatomical principles culminating in a series of lectures on ‘Rest and Pain’. For the first time the clinical importance of each was highlighted in surgical practice. By public demand the lectures were published as a book, still in print today, which brought a new emphasis to clinical anatomy that would permeate surgery thereafter. He became President of the Royal College of Surgeons and was Surgeon Extraordinary to Queen Victoria. A substantial review of his life has not been published; with the present decline in anatomical teaching, we can learn much from understanding a surgeon who dedicated his life to anatomy.
- Published
- 2007
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23. Transcriptional implications of intragenic DNA methylation in the oestrogen receptor alpha gene in breast cancer cells and tissues
- Author
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Wei Dai, Robert S. Brown, Kirsty Flower, Edmund Gore, Charlotte Wilhelm-Benartzi, James M. Flanagan, Natalie S. Shenker, Mona El Bahrawy, Gillian Weaver, and Emma Bell
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Cancer Research ,Breast milk ,Transcription, Genetic ,Breast Neoplasms ,Biology ,Epigenesis, Genetic ,Breast cancer ,Transcription (biology) ,Cell Line, Tumor ,Genetics ,medicine ,Humans ,Breast epithelial cells ,Mammary Glands, Human ,Promoter Regions, Genetic ,skin and connective tissue diseases ,Gene ,Regulation of gene expression ,DNA methylation ,Milk, Human ,ESR1 ,Carcinoma, Ductal, Breast ,Estrogen Receptor alpha ,Sequence Analysis, DNA ,Methylation ,medicine.disease ,R1 ,Gene Expression Regulation, Neoplastic ,body regions ,Intragenic ,Oncology ,Cancer research ,Female ,Stem cell ,Breast cancer campaign tissue bank ,Estrogen receptor alpha ,Research Article - Abstract
Background DNA methylation variability regions (MVRs) across the oestrogen receptor alpha (ESR1) gene have been identified in peripheral blood cells from breast cancer patients and healthy individuals. In contrast to promoter methylation, gene body methylation may be important in maintaining active transcription. This study aimed to assess MVRs in ESR1 in breast cancer cell lines, tumour biopsies and exfoliated epithelial cells from expressed breast milk (EBM), to determine their significance for ESR1 transcription. Methods DNA methylation levels in eight MVRs across ESR1 were assessed by pyrosequencing bisulphite-converted DNA from three oestrogen receptor (ER)-positive and three ER-negative breast cancer cell lines. DNA methylation and expression were assessed following treatment with DAC (1 μM), or DMSO (controls). ESR1 methylation levels were also assayed in DNA from 155 invasive ductal carcinoma biopsies provided by the Breast Cancer Campaign Tissue Bank, and validated with DNA methylation profiles from the TCGA breast tumours (n = 356 ER-pos, n = 109 ER-neg). DNA methylation was profiled in exfoliated breast epithelial cells from EBM using the Illumina 450 K (n = 36) and pyrosequencing in a further 53 donor samples. ESR1 mRNA levels were measured by qRT-PCR. Results We show that ER-positive cell lines had unmethylated ESR1 promoter regions and highly methylated intragenic regions (median, 80.45%) while ER-negative cells had methylated promoters and lower intragenic methylation levels (median, 38.62%). DAC treatment increased ESR1 expression in ER-negative cells, but significantly reduced methylation and expression of ESR1 in ER-positive cells. The ESR1 promoter was unmethylated in breast tumour biopsies with high levels of intragenic methylation, independent of ER status. However, ESR1 methylation in the strongly ER-positive EBM DNA samples were very similar to ER-positive tumour cell lines. Conclusion DAC treatment inhibited ESR1 transcription in cells with an unmethylated ESR1 promoter and reduced intragenic DNA methylation. Intragenic methylation levels correlated with ESR1 expression in homogenous cell populations (cell lines and exfoliated primary breast epithelial cells), but not in heterogeneous tumour biopsies, highlighting the significant differences between the in vivo tumour microenvironment and individual homogenous cell types. These findings emphasise the need for care when choosing material for epigenetic research and highlights the presence of aberrant intragenic methylation levels in tumour tissue. Electronic supplementary material The online version of this article (doi:10.1186/s12885-015-1335-5) contains supplementary material, which is available to authorized users.
- Published
- 2015
24. A new role for androgen in testicular descent: permitting gubernacular cell proliferation in response to the neuropeptide, calcitonin gene–related peptide
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Pamela J. Farmer, Jenny Huynh, Natalie S. Shenker, and John M. Hutson
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Male ,endocrine system ,medicine.medical_specialty ,medicine.drug_class ,Calcitonin Gene-Related Peptide ,Neuropeptide ,Calcitonin gene-related peptide ,Flutamide ,Rats, Sprague-Dawley ,chemistry.chemical_compound ,Internal medicine ,Testis ,medicine ,Animals ,Receptor ,Cell Proliferation ,Gubernaculum ,business.industry ,General Medicine ,Androgen ,Rats ,Endocrinology ,medicine.anatomical_structure ,Animals, Newborn ,chemistry ,Calcitonin ,Pediatrics, Perinatology and Child Health ,Surgery ,business ,Sensory nerve - Abstract
Cell proliferation at the gubernacular tip increases in response to exogenous calcitonin gene-related peptide (CGRP) during migration into the scrotum. Calcitonin gene-related peptide is contained in the masculinized sensory branches of the genitofemoral nerve. We tested the independent effects of chemical sensory nerve disruption and prenatal androgen blockade on the in vitro gubernacular proliferative response to CGRP.Neonatal Sprague-Dawley rats were injected with capsaicin, a sensory nerve toxin, and gubernacula dissected 2 days later (D2). Sprague-Dawley dams were injected with flutamide, an androgen receptor antagonist, between days 15 and 19 of gestation. Flutamide pretreated males, and normal neonatal rats, were dissected at D0 and D2. Gubernacula were cultured for 24 hours +/- CGRP, pulse-labelled for the last 4 hours of culture with bromodeoxyuridine, a thymidine analogue marker for DNA replication, sectioned, and stained using immunohistochemistry. The percentage of positively staining cells in the gubernacular tip was calculated from three separate counts by a blinded observer and compared using analysis of variance.Normal D0 gubernacular tips showed a significant response of cell proliferation to exogenous CGRP (34% vs 9% in controls, P.001), which resolved by day 2 (16% vs 12%, P.05). Calcitonin gene-related peptide markedly increased cell proliferation in D2 capsaicin pretreated gubernacula compared with controls (25% vs 14%, P.01) and normal D2 gubernacula cultured with CGRP (P.01). D0 flutamide pretreated cultured with CGRP showed no increase in cell proliferation compared with controls (16% vs 11%), but a small response was seen by D2 (19% vs 9%, P.05). There was no significant difference between proliferation rates in the control groups.Sensory innervation interruption sensitises the gubernaculum to exogenous CGRP, suggesting upregulation of CGRP receptors. In contrast, androgen blockade abolishes the increased rate of cell proliferation within the gubernacular tip. We conclude that androgens are necessary to "preprogramme" the proliferative response of the gubernaculum to CGRP.
- Published
- 2006
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25. DNA methylation profiling to assess pathogenicity of BRCA1 unclassified variants in breast cancer
- Author
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Kirsty J Flower, Natalie S Shenker, Mona El-Bahrawy, David E Goldgar, Michael T Parsons, Amanda B Spurdle, Joanna R Morris, Robert Brown, James M Flanagan, Kirsty J Flower, Natalie S Shenker, Mona El-Bahrawy, David E Goldgar, Michael T Parsons, Amanda B Spurdle, Joanna R Morris, Robert Brown, and James M Flanagan
- Published
- 2016
- Full Text
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26. Epigenome-wide association study in the European Prospective Investigation into Cancer and Nutrition (EPIC-Turin) identifies novel genetic loci associated with smoking
- Author
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Paolo Vineis, Carlotta Sacerdote, Robert S. Brown, Natalie S. Shenker, Fulvio Ricceri, Silvia Polidoro, Mark A. Birrell, Karin van Veldhoven, James M. Flanagan, and Maria G. Belvisi
- Subjects
Oncology ,Epigenomics ,Male ,medicine.medical_specialty ,Population ,Nutritional Status ,Genome-wide association study ,Aryl hydrocarbon receptor repressor ,Breast Neoplasms ,Biology ,Mice ,Breast cancer ,Internal medicine ,Genetics ,medicine ,Basic Helix-Loop-Helix Transcription Factors ,Animals ,Humans ,education ,Molecular Biology ,Lung ,Genetics (clinical) ,education.field_of_study ,Smoking ,General Medicine ,DNA Methylation ,medicine.disease ,European Prospective Investigation into Cancer and Nutrition ,F2RL3 ,Repressor Proteins ,CpG site ,Case-Control Studies ,DNA methylation ,Colonic Neoplasms ,CpG Islands ,Female ,Receptors, Thrombin ,Genome-Wide Association Study - Abstract
A single cytosine-guanine dinucleotide (CpG) site within coagulation factor II (thrombin) receptor-like 3 (F2RL3) was recently found to be hypomethylated in peripheral blood genomic DNA from smokers compared with former and non-smokers. We performed two epigenome-wide association studies (EWAS) nested in a prospective healthy cohort using the Illumina 450K Methylation Beadchip. The two populations consisted of matched pairs of healthy individuals (n = 374), of which half went on to develop breast or colon cancer. The association was analysed between methylation and smoking status, as well as cancer risk. In addition to the same locus in F2RL3, we report several loci that are hypomethylated in smokers compared with former and non-smokers, including an intragenic region of the aryl hydrocarbon receptor repressor gene (AHRR; cg05575921, P = 2.31 × 10(-15); effect size = 14-17%), an intergenic CpG island on 2q37.1 (cg21566642, P = 3.73 × 10(-13); effect size = 12%) and a further intergenic region at 6p21.33 (cg06126421, P = 4.96 × 10(-11), effect size = 7-8%). Bisulphite pyrosequencing validated six loci in a further independent population of healthy individuals (n = 180). Methylation levels in AHRR were also significantly decreased (P < 0.001) and expression increased (P = 0.0047) in the lung tissue of current smokers compared with non-smokers. This was further validated in a mouse model of smoke exposure. We observed an association with breast cancer risk for the 2q37.1 locus (P = 0.003, adjusted for the smoking status), but not for the other loci associated with smoking. These data show that smoking has a direct effect on the epigenome in lung tissue, which is also detectable in peripheral blood DNA and may contribute to cancer risk.
- Published
- 2012
27. DNA methylation profiling to assess pathogenicity of BRCA1 unclassified variants in breast cancer
- Author
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Kirsty J Flower, Natalie S Shenker, Mona El-Bahrawy, David E Goldgar, Michael T Parsons, Amanda B Spurdle, Joanna R Morris, Robert Brown, James M Flanagan, Kirsty J Flower, Natalie S Shenker, Mona El-Bahrawy, David E Goldgar, Michael T Parsons, Amanda B Spurdle, Joanna R Morris, Robert Brown, and James M Flanagan
- Published
- 2015
- Full Text
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28. DNA methylation profiling to assess pathogenicity of BRCA1 unclassified variants in breast cancer
- Author
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David E Goldgar, Michael T. Parsons, KConFab Investigators, Amanda B. Spurdle, Robert Brown, James M. Flanagan, Kirsty J. Flower, Natalie S. Shenker, Mona El-Bahrawy, AFFECT study group, Joanna R. Morris, David E Goldgar, Michael T. Parsons, KConFab Investigators, Amanda B. Spurdle, Robert Brown, James M. Flanagan, Kirsty J. Flower, Natalie S. Shenker, Mona El-Bahrawy, AFFECT study group, and Joanna R. Morris
- Published
- 2015
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29. Crohn's Disease
- Author
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Ioannis Nikolopoulos, Vanash M. Patel, and Natalie S. Shenker
- Subjects
Crohn's disease ,Information retrieval ,business.industry ,05 social sciences ,Selected Internet Viewings ,General Medicine ,medicine.disease ,03 medical and health sciences ,0302 clinical medicine ,Text mining ,030220 oncology & carcinogenesis ,0502 economics and business ,medicine ,Surgery ,business ,050203 business & management - Published
- 2007
30. Signalling molecules: clues from development of the limb bud for cryptorchidism?
- Author
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Jenny Huynh, Sophie S. Nightingale, John M. Hutson, and Natalie S. Shenker
- Subjects
Male ,endocrine system ,Limb Buds ,Abdominal wall ,Limb bud ,Cell Movement ,Signalling molecules ,Scrotum ,Cryptorchidism ,Testis ,medicine ,Animals ,Humans ,Cell Proliferation ,Gubernaculum ,business.industry ,Genes, Homeobox ,Gene Expression Regulation, Developmental ,Cell Differentiation ,General Medicine ,Cell movement ,Fascia ,Anatomy ,body regions ,Fibroblast Growth Factors ,Wnt Proteins ,medicine.anatomical_structure ,Pediatrics, Perinatology and Child Health ,Surgery ,business - Abstract
Recent studies of testicular descent suggest not only that the gubernaculum does not initially attach to the scrotum, but also that it must migrate from the groin. Two findings suggest that the gubernaculum may behave like an embryonic limb bud during this phase. First, the active growth centre is at the distal tip of the gubernaculum. Secondly, the gubernaculum is loose in the subcutaneous tissues beneath Scarpa's fascia. The free protrusion of the gubernaculum from the abdominal wall was so reminiscent of a developing embryonic limb bud, we thought that the biological controls of both processus may be similar. This review examines what is known about vertebrate limb bud development, and compares the mechanisms to what has recently been discovered in the gubernaculum. The hypothesis that both processes may be similar is initially consistent with the current facts, encouraging us to investigate this further experimentally.
- Published
- 2007
31. Abstract 1063: Transcriptional implications of intragenic DNA methylation in the estrogen receptor alpha gene in breast cancer cells and tissues
- Author
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Charlotte Wilhelm-Benartzi, Mona El Bahrawy, Robert S. Brown, Gillian Weaver, Kirsty Flower, James M. Flanagan, Natalie S. Shenker, Wei Dai, and Emma Bell
- Subjects
Cancer Research ,Promoter ,Methylation ,Biology ,medicine.disease ,Molecular biology ,Demethylating agent ,body regions ,chemistry.chemical_compound ,Breast cancer ,Oncology ,chemistry ,DNA methylation ,Cancer research ,medicine ,Epigenetics ,Estrogen receptor alpha ,DNA - Abstract
Introduction: DNA methylation variability regions (MVRs) across the estrogen receptor alpha (ESR1) gene have been identified in peripheral blood cells from breast cancer patients and healthy individuals. In contrast to promoter methylation, gene body methylation may be important in maintaining active transcription. This study aimed to assess MVRs in ESR1 in breast cancer cell lines, tumor biopsies and exfoliated epithelial cells from expressed breast milk (EBM) to determine their significance for ESR1 transcription. Methods: DNA methylation levels in eight MVRs across ESR1 were assessed in pyrosequencing bisulphite-converted DNA from three oestrogen receptor (ER)-positive and three ER-negative breast cancer cell lines. DNA methylation and expression were assessed following treatment with the demethylating agent, decitabine (DAC, 1 μM), or DMSO (controls). ESR1 methylation levels were also assayed in DNA from 155 invasive ductal carcinoma biopsies provided by the Breast Cancer Campaign Tissue Bank, and validated with DNA methylation profiles from the TCGA breast tumors (n = 356 ER-pos, n = 109 ER-neg). DNA methylation was profiled in exfoliated breast epithelial cells from EBM using the Illumina 450K (n = 36) and pyrosequencing in a further 53 donor samples. ESR1 mRNA levels were measured by qRT-PCR. Results: We show that ER-positive cell lines had unmethylated ESR1 promoter regions and highly methylated intragenic regions (median, 80.45%) while ER-negative cells had methylated promoters and lower intragenic methylation levels (median, 38.62%). DAC treatment increased ESR1 expression in ER-negative cells, but significantly reduced methylation and expression of ESR1 in ER-positive cells. The ESR1 promoter was unmethylated in breast tumor biopsies with high levels of intragenic methylation, independent of ER status. However, ESR1 methylation in the strongly ER-positive EBM DNA samples were very similar to ER-positive tumor cell lines. Conclusion: Intragenic methylation levels correlated with ESR1 expression in vitro, but with markedly different methylation patterns between homogenous cell populations and heterogeneous tumour biopsies. DAC treatment inhibited ESR1 transcription in cells with an unmethylated ESR1 promoter along with reduced levels of intragenic DNA methylation. These findings emphasize the need for care when choosing tissue types for epigenetic research and interpreting results from heterogenous tissue. Note: This abstract was not presented at the meeting. Citation Format: NATALIE S. SHENKER, Kirsty J. Flower, Charlotte Wilhelm-Benartzi, Wei Dai, Emma Bell, Mona El Bahrawy, Gillian Weaver, James M. Flanagan, Robert Brown. Transcriptional implications of intragenic DNA methylation in the estrogen receptor alpha gene in breast cancer cells and tissues. [abstract]. In: Proceedings of the 106th Annual Meeting of the American Association for Cancer Research; 2015 Apr 18-22; Philadelphia, PA. Philadelphia (PA): AACR; Cancer Res 2015;75(15 Suppl):Abstract nr 1063. doi:10.1158/1538-7445.AM2015-1063
- Published
- 2015
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32. 525 Epigenome-wide Association Study in the European Prospective Investigation Into Cancer and Nutrition (EPIC-Turin) Identifies Novel Genes Associated With Smoking
- Author
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Silvia Polidoro, Paolo Vineis, Robert M Brown, Carlotta Sacerdote, James M. Flanagan, Fulvio Ricceri, K. van Veldhoven, R Critelli, and Natalie S. Shenker
- Subjects
Novel gene ,Cancer Research ,Oncology ,Epigenome ,Biology ,EPIC ,Bioinformatics ,European Prospective Investigation into Cancer and Nutrition - Published
- 2012
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33. The impact of endothelial nitric oxide synthase polymorphisms on long-term renal allograft outcome
- Author
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Neil A. Haldar, Michael Bunce, Ken I. Welsh, Sara E. Marshall, John-Joe Reilly, and Natalie S. Shenker
- Subjects
Nephrology ,Graft Rejection ,medicine.medical_specialty ,Guanine ,Time Factors ,Endothelium ,Nitric Oxide Synthase Type III ,Gastroenterology ,Linkage Disequilibrium ,Nitric oxide ,Pathogenesis ,Cohort Studies ,chemistry.chemical_compound ,Cytosine ,Gene Frequency ,Enos ,Internal medicine ,medicine ,Cadaver ,Humans ,Genetic Predisposition to Disease ,Retrospective Studies ,Transplantation ,Kidney ,Polymorphism, Genetic ,biology ,business.industry ,medicine.disease ,biology.organism_classification ,Kidney Transplantation ,surgical procedures, operative ,Endocrinology ,medicine.anatomical_structure ,chemistry ,Nitric Oxide Synthase ,business ,Kidney disease - Abstract
A major manifestation of chronic allograft failure (CAF) is the accelerated onset of atherosclerotic lesions within the graft. Polymorphisms in the endothelial nitric oxide synthase (eNOS) gene have been implicated in the pathogenesis of native atherosclerosis. This study tested the hypothesis that polymorphisms in eNOS are associated with susceptibility to CAF after cadaveric renal transplantation. The patient cohort comprised 140 renal transplant recipients who had received their transplants between 1985 and 1997 at the Oxford Transplant Centre and included 61 patients with biopsy-proven CAF and 79 with stable graft function for at least 10 years (long-term survivors, LTS). Genotyping for one polymorphism in the promoter region and two polymorphisms in the coding regions of the eNOS gene was performed by polymerase chain reaction with sequence-specific primers (PCR-SSP). No association was found between any genetic variant and the development of CAF, even after stratification for other known risk factors. Statistical analysis revealed that all three polymorphisms were closely linked. We conclude that recipient eNOS gene polymorphisms do not alter the risk of CAF after renal transplantation.
- Published
- 2001
34. The impact of endothelial nitric oxide synthase polymorphisms on long-term renal allograft outcome.
- Author
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Natalie S. Shenker, Neil A. Haldar, John-Joe Reilly, Mike Bunce, Ken I. Welsh, and Sara E. Marshall
- Subjects
- *
HOMOGRAFTS , *ATHEROSCLEROSIS , *GENETIC polymorphisms - Abstract
A major manifestation of chronic allograft failure (CAF) is the accelerated onset of atherosclerotic lesions within the graft. Polymorphisms in the endothelial nitric oxide synthase (eNOS) gene have been implicated in the pathogenesis of native atherosclerosis. This study tested the hypothesis that polymorphisms in eNOS are associated with susceptibility to CAF after cadaveric renal transplantation. The patient cohort comprised 140 renal transplant recipients who had received their transplants between 1985 and 1997 at the Oxford Transplant Centre and included 61 patients with biopsy-proven CAF and 79 with stable graft function for at least 10 years (long-term survivors, LTS). Genotyping for one polymorphism in the promoter region and two polymorphisms in the coding regions of the eNOS gene was performed by polymerase chain reaction with sequence-specific primers (PCR-SSP). No association was found between any genetic variant and the development of CAF, even after stratification for other known risk factors. Statistical analysis revealed that all three polymorphisms were closely linked. We conclude that recipient eNOS gene polymorphisms do not alter the risk of CAF after renal transplantation. [ABSTRACT FROM AUTHOR]
- Published
- 2003
- Full Text
- View/download PDF
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