14 results on '"Nathan R Huber"'
Search Results
2. Photon-counting Detector CT with Deep Learning Noise Reduction to Detect Multiple Myeloma
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Francis I. Baffour, Nathan R. Huber, Andrea Ferrero, Kishore Rajendran, Katrina N. Glazebrook, Nicholas B. Larson, Shaji Kumar, Joselle M. Cook, Shuai Leng, Elisabeth R. Shanblatt, Cynthia H. McCollough, and Joel G. Fletcher
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Male ,Adult ,Photons ,Deep Learning ,Phantoms, Imaging ,Humans ,Radiology, Nuclear Medicine and imaging ,Middle Aged ,Multiple Myeloma ,Tomography, X-Ray Computed ,Aged - Abstract
Background Photon-counting detector (PCD) CT and deep learning noise reduction may improve spatial resolution at lower radiation doses compared with energy-integrating detector (EID) CT. Purpose To demonstrate the diagnostic impact of improved spatial resolution in whole-body low-dose CT scans for viewing multiple myeloma by using PCD CT with deep learning denoising compared with conventional EID CT. Materials and Methods Between April and July 2021, adult participants who underwent a whole-body EID CT scan were prospectively enrolled and scanned with a PCD CT system in ultra-high-resolution mode at matched radiation dose (8 mSv for an average adult) at an academic medical center. EID CT and PCD CT images were reconstructed with Br44 and Br64 kernels at 2-mm section thickness. PCD CT images were also reconstructed with Br44 and Br76 kernels at 0.6-mm section thickness. The thinner PCD CT images were denoised by using a convolutional neural network. Image quality was objectively quantified in two phantoms and a randomly selected subset of participants (10 participants; median age, 63.5 years; five men). Two radiologists scored PCD CT images relative to EID CT by using a five-point Likert scale to detect findings reflecting multiple myeloma. The scoring for the matched reconstruction series was blinded to scanner type. Reader-averaged scores were tested with the null hypothesis of equivalent visualization between EID and PCD. Results Twenty-seven participants (median age, 68 years; IQR, 61-72 years; 16 men) were included. The blinded assessment of 2-mm images demonstrated improvement in viewing lytic lesions, intramedullary lesions, fatty metamorphosis, and pathologic fractures for PCD CT versus EID CT (
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- 2023
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3. A minimum SNR criterion for computed tomography object detection in the projection domain
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Scott S, Hsieh, Shuai, Leng, Lifeng, Yu, Nathan R, Huber, and Cynthia H, McCollough
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Phantoms, Imaging ,Image Processing, Computer-Assisted ,Humans ,General Medicine ,Signal-To-Noise Ratio ,Radiation Dosage ,Tomography, X-Ray Computed ,Monte Carlo Method ,Algorithms - Abstract
A common rule of thumb for object detection is the Rose criterion, which states that a signal must be five standard deviations above background to be detectable to a human observer. The validity of the Rose criterion in CT imaging is limited due to the presence of correlated noise. Recent reconstruction and denoising methodologies are also able to restore apparent image quality in very noisy conditions, and the ultimate limits of these methodologies are not yet known.To establish a lower bound on the minimum achievable signal-to-noise ratio (SNR) for object detection, below which detection performance is poor regardless of reconstruction or denoising methodology.We consider a numerical observer that operates on projection data and has perfect knowledge of the background and the objects to be detected, and determine the minimum projection SNR that is necessary to achieve predetermined lesion-level sensitivity and case-level specificity targets. We define a set of discrete signal objectsWhenEven with perfect knowledge of the background and target objects, the ideal observer still requires an SNR of approximately 5. This is a lower bound on the SNR that would be required in real conditions, where the background and target objects are not known perfectly. Algorithms that denoise lesions with less than 5 projection SNR, regardless of the denoising methodology, are expected to show vanishing effects or false positive lesions.
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- 2022
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4. Quantifying lumen diameter in coronary artery stents with high‐resolution photon counting detector CT and convolutional neural network denoising
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Emily K. Koons, Jamison E. Thorne, Nathan R. Huber, Shaojie Chang, Kishore Rajendran, Cynthia H. McCollough, and Shuai Leng
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General Medicine - Published
- 2023
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5. Pie‐Net: Prior‐information‐enabled deep learning noise reduction for coronary CT angiography acquired with a photon counting detector CT
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Shaojie Chang, Nathan R. Huber, Jeffrey F. Marsh, Emily K. Koons, Hao Gong, Lifeng Yu, Cynthia H. McCollough, and Shuai Leng
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General Medicine - Published
- 2023
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6. Technical Note: Phantom-based training framework for convolutional neural network CT noise reduction
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Nathan R. Huber, Andrew D. Missert, Hao Gong, Shuai Leng, Lifeng Yu, and Cynthia H. McCollough
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General Medicine - Abstract
Deep artificial neural networks such as convolutional neural networks (CNNs) have been shown to be effective models for reducing noise in CT images while preserving anatomic details. A practical bottleneck for developing CNN-based denoising models is the procurement of training data consisting of paired examples of high-noise and low-noise CT images. Obtaining these paired data are not practical in a clinical setting where the raw projection data is not available. This work outlines a technique to optimize CNN denoising models using methods that are available in a routine clinical setting.To demonstrate a phantom-based training framework for CNN noise reduction that can be efficiently implemented on any CT scanner.The phantom-based training framework uses supervised learning in which training data are synthesized using an image-based noise insertion technique. Ten patient image series were used for training and validation (9:1) and noise-only images obtained from anthropomorphic phantom scans. Phantom noise-only images were superimposed on patient images to imitate low-dose CT images for use in training. A modified U-Net architecture was used with mean-squared-error and feature reconstruction loss. The training framework was tested for clinically indicated whole-body-low-dose CT images, as well as routine abdomen-pelvis exams for which projection data was unavailable. Performance was assessed based on root-mean-square error, structural similarity, line profiles, and visual assessment.When the CNN was tested on five reserved quarter-dose whole-body-low-dose CT images, noise was reduced by 75%, root-mean-square-error reduced by 34%, and structural similarity increased by 60%. Visual analysis and line profiles indicated that the method significantly reduced noise while maintaining spatial resolution of anatomic features.The proposed phantom-based training framework demonstrated strong noise reduction while preserving spatial detail. Because this method is based within the image domain, it can be easily implemented without access to projection data.
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- 2022
7. Evaluating a Convolutional Neural Network Noise Reduction Method When Applied to CT Images Reconstructed Differently Than Training Data
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Shuai Leng, Lifeng Yu, Nathan R. Huber, Cynthia H. McCollough, and Andrew D. Missert
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Training set ,business.industry ,Noise reduction ,Field of view ,Signal-To-Noise Ratio ,Residual ,Convolutional neural network ,Article ,Noise ,Deep Learning ,Kernel (statistics) ,Image Processing, Computer-Assisted ,Humans ,Medicine ,Radiology, Nuclear Medicine and imaging ,Computer vision ,Neural Networks, Computer ,Artificial intelligence ,Tomography, X-Ray Computed ,business ,Increased thickness ,Algorithms - Abstract
OBJECTIVE: The aim of this study was to evaluate a narrowly trained convolutional neural network (CNN) denoising algorithm when applied to images reconstructed differently than training data set. METHODS: A residual CNN was trained using 10 noise inserted examinations. Training images were reconstructed with 275 mm of field of view (FOV), medium smooth kernel (D30), and 3 mm of thickness. Six examinations were reserved for testing; these were reconstructed with 100 to 450 mm of FOV, smooth to sharp kernels, and 1 to 5 mm of thickness. RESULTS: When test and training reconstruction settings were not matched, there was either reduced denoising efficiency or resolution degradation. Denoising efficiency was reduced when FOV was decreased or a smoother kernel was used. Resolution loss occurred when the network was applied to an increased FOV, sharper kernel, or decreased image thickness. CONCLUSIONS: The CNN denoising performance was degraded with variations in FOV, kernel, or decreased thickness. Denoising performance was not affected by increased thickness.
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- 2021
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8. Clinical evaluation of a phantom-based deep convolutional neural network for whole-body-low-dose and ultra-low-dose CT skeletal surveys
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Cynthia H. McCollough, Lifeng Yu, Andrew D. Missert, Tara L. Anderson, Nathan R. Huber, Shuai Leng, Joel G. Fletcher, Katrina N. Glazebrook, and Mark C. Adkins
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030203 arthritis & rheumatology ,Radon transform ,business.industry ,Image quality ,Deep learning ,Noise reduction ,Pattern recognition ,Iterative reconstruction ,Convolutional neural network ,Imaging phantom ,030218 nuclear medicine & medical imaging ,Visualization ,03 medical and health sciences ,0302 clinical medicine ,Medicine ,Radiology, Nuclear Medicine and imaging ,Artificial intelligence ,business - Abstract
This study evaluated the clinical utility of a phantom-based convolutional neural network noise reduction framework for whole-body-low-dose CT skeletal surveys. The CT exams of ten patients with multiple myeloma were retrospectively analyzed. Exams were acquired with routine whole-body-low-dose CT protocol and projection noise insertion was used to simulate 25% dose exams. Images were reconstructed with either iterative reconstruction or filtered back projection with convolutional neural network post-processing. Diagnostic quality and structure visualization were blindly rated (subjective scale ranging from 0 [poor] to 100 [excellent]) by three musculoskeletal radiologists for iterative reconstruction and convolutional neural network images at routine whole-body-low-dose and 25% dose CT. For the diagnostic quality rating, the convolutional neural network outscored iterative reconstruction at routine whole-body-low-dose CT (convolutional neural network: 95 ± 5, iterative reconstruction: 85 ± 8) and at the 25% dose level (convolutional neural network: 79 ± 10, iterative reconstruction: 22 ± 13). Convolutional neural network applied to 25% dose was rated inferior to iterative reconstruction applied to routine dose. Similar trends were observed in rating experiments focusing on structure visualization. Results indicate that the phantom-based convolutional neural network noise reduction framework can improve visualization of critical structures within CT skeletal surveys. At matched dose level, the convolutional neural network outscored iterative reconstruction for all conditions studied. The image quality improvement of convolutional neural network applied to 25% dose indicates a potential for dose reduction; however, the 75% dose reduction condition studied is not currently recommended for clinical implementation.
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- 2021
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9. Pixel-wise bias approximation and correction for convolutional neural network noise reduction in CT
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Nathan R. Huber, Hao Gong, Thomas Huber, David Campeau, Scott S. Hsieh, Shuai Leng, Lifeng Yu, and Cynthia H. McCollough
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- 2022
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10. Residual-based convolutional-neural-network (CNN) for low-dose CT denoising: impact of multi-slice input
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Zhongxing Zhou, Nathan R. Huber, Akitoshi Inoue, Cynthia H. McCollough, and Lifeng Yu
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- 2022
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11. Dual-Contrast Biphasic Liver Imaging With Iodine and Gadolinium Using Photon-Counting Detector Computed Tomography: An Exploratory Animal Study
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Kishore Rajendran, Lifeng Yu, Liqiang Ren, Nathan R. Huber, Joel G. Fletcher, and Cynthia H. McCollough
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Materials science ,Swine ,Gadolinium ,media_common.quotation_subject ,Femoral vein ,Magnification ,chemistry.chemical_element ,Contrast Media ,Iodine ,Article ,Gadobutrol ,medicine ,Contrast (vision) ,Animals ,Radiology, Nuclear Medicine and imaging ,media_common ,Photons ,business.industry ,Phantoms, Imaging ,General Medicine ,chemistry ,Liver ,Iohexol ,Bolus (digestion) ,Nuclear medicine ,business ,Tomography, X-Ray Computed ,medicine.drug - Abstract
PURPOSE: The aims of this study were to develop a single-scan dual-contrast protocol for biphasic liver imaging with 2 intravenous contrast agents (iodine and gadolinium) and to evaluate its effectiveness in an exploratory swine study using a photon-counting detector computed tomography (PCD-CT) system. MATERIALS AND METHODS: A dual-contrast CT protocol was developed for PCD-CT to simultaneously acquire 2 phases of liver contrast enhancement, with the late arterial phase enhanced by 1 contrast agent (iodine-based) and the portal venous phase enhanced by the other (gadolinium-based). A gadolinium contrast bolus (gadobutrol: 64 mL, 8 mL/s) and an iodine contrast bolus (iohexol: 40 mL, 5 mL/s) were intravenously injected in the femoral vein of a healthy domestic swine, with the second injection initiated after 17 seconds from the beginning of the first injection; PCD-CT image acquisition was performed 12 seconds after the beginning of the iodine contrast injection. A convolutional neural network (CNN)–based denoising technique was applied to PCD-CT images to overcome the inherent noise magnification issue in iodine/gadolinium decomposition task. Iodine and gadolinium material maps were generated using a 3-material decomposition method in image space. A set of contrast samples (mixed iodine and gadolinium) was attached to the swine belly; quantitative accuracy of material decomposition in these inserts between measured and true concentrations was calculated using root mean square error. An abdominal radiologist qualitatively evaluated the delineation of arterial and venous vasculatures in the swine liver using iodine and gadolinium maps obtained using the dual-contrast PCD-CT protocol. RESULTS: The iodine and gadolinium samples attached to the swine were quantified with root mean square error values of 0.75 mg/mL for iodine and 0.45 mg/mL for gadolinium from the contrast material maps derived from the denoised PCD-CT images. Hepatic arteries containing iodine and veins containing gadolinium in the swine liver could be clearly visualized. Compared with the original images, better distinctions between 2 liver phases were achieved using CNN denoising, with approximately 60% to 80% noise reduction in contrast material maps acquired with the denoised PCD-CT images compared with the original images. CONCLUSIONS: Simultaneous biphasic liver imaging in a single multienergy PCD-CT acquisition using a dual-contrast (iodine and gadolinium) injection protocol and CNN denoising was demonstrated in a swine study, where the enhanced hepatic arteries (containing iodine) and the enhanced hepatic veins (containing gadolinium) could be clearly visualized and delineated in the swine liver.
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- 2021
12. Dedicated convolutional neural network for noise reduction in ultra-high-resolution photon-counting detector computed tomography
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Nathan R Huber, Andrea Ferrero, Kishore Rajendran, Francis Baffour, Katrina N Glazebrook, Felix E Diehn, Akitoshi Inoue, Joel G Fletcher, Lifeng Yu, Shuai Leng, and Cynthia H McCollough
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Radiographic Image Enhancement ,Photons ,Radiological and Ultrasound Technology ,Phantoms, Imaging ,Humans ,Radiology, Nuclear Medicine and imaging ,Neural Networks, Computer ,Tomography, X-Ray Computed - Abstract
Objective. To develop a convolutional neural network (CNN) noise reduction technique for ultra-high-resolution photon-counting detector computed tomography (UHR-PCD-CT) that can be efficiently implemented using only clinically available reconstructed images. The developed technique was demonstrated for skeletal survey, lung screening, and head angiography (CTA). Approach. There were 39 participants enrolled in this study, each received a UHR-PCD and an energy integrating detector (EID) CT scan. The developed CNN noise reduction technique uses image-based noise insertion and UHR-PCD-CT images to train a U-Net via supervised learning. For each application, 13 patient scans were reconstructed using filtered back projection (FBP) and iterative reconstruction (IR) and allocated into training, validation, and testing datasets (9:1:3). The subtraction of FBP and IR images resulted in approximately noise-only images. The 5-slice average of IR produced a thick reference image. The CNN training input consisted of thick reference images with reinsertion of spatially decoupled noise-only images. The training target consisted of the corresponding thick reference images without noise insertion. Performance was evaluated based on difference images, line profiles, noise measurements, nonlinear perturbation assessment, and radiologist visual assessment. UHR-PCD-CT images were compared with EID images (clinical standard). Main results. Up to 89% noise reduction was achieved using the proposed CNN. Nonlinear perturbation assessment indicated reasonable retention of 1 mm radius and 1000 HU contrast signals (>80% for skeletal survey and head CTA, >50% for lung screening). A contour plot indicated reduced retention for small-radius and low contrast perturbations. Radiologists preferred CNN over IR for UHR-PCD-CT noise reduction. Additionally, UHR-PCD-CT with CNN was preferred over standard resolution EID-CT images. Significance. CT images reconstructed with very sharp kernels and/or thin sections suffer from increased image noise. Deep learning noise reduction can be used to offset noise level and increase utility of UHR-PCD-CT images.
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- 2022
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13. Deep-learning-based direct synthesis of low-energy virtual monoenergetic images with multi-energy CT
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Kishore Rajendran, Shuai Leng, Hao Gong, Cynthia H. McCollough, Karen N. DSouza, Joel G. Fletcher, Jeffrey F. Marsh, and Nathan R. Huber
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Artifact (error) ,business.industry ,Image quality ,Noise reduction ,Image processing ,Special Section Celebrating X-Ray Computed Tomography at 50 ,Convolutional neural network ,Imaging phantom ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,Noise ,0302 clinical medicine ,Mean absolute percentage error ,030220 oncology & carcinogenesis ,Medicine ,Radiology, Nuclear Medicine and imaging ,Computer vision ,Artificial intelligence ,business - Abstract
Purpose: We developed a deep learning method to reduce noise and beam-hardening artifact in virtual monoenergetic image (VMI) at low x-ray energy levels. Approach: An encoder–decoder type convolutional neural network was implemented with customized inception modules and in-house-designed training loss (denoted as Incept-net), to directly estimate VMI from multi-energy CT images. Images of an abdomen-sized water phantom with varying insert materials were acquired from a research photon-counting-detector CT. The Incept-net was trained with image patches ([Formula: see text]) extracted from the phantom data, as well as synthesized, random-shaped numerical insert materials. The whole CT images ([Formula: see text]) with the remaining real insert materials that were unseen in network training were used for testing. Seven contrast-enhanced abdominal CT exams were used for preliminary evaluation of Incept-net generalizability over anatomical background. Mean absolute percentage error (MAPE) was used to evaluate CT number accuracy. Results: Compared to commercial VMI software, Incept-net largely suppressed beam-hardening artifact and reduced noise (53%) in phantom study. Incept-net presented comparable CT number accuracy at higher-density ([Formula: see text]-value [0.0625, 0.999]) and improved it at lower-density inserts ([Formula: see text]) with overall MAPE: Incept-net [2.9%, 4.6%]; commercial-VMI [6.7%, 10.9%]. In patient images, Incept-net suppressed beam-hardening artifact and reduced noise (up to 50%, [Formula: see text]). Conclusion: In this preliminary study, Incept-net presented the potential to improve low-energy VMI quality.
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- 2020
14. Magician’s Corner: 7. Using Convolutional Neural Networks to Reduce Noise in Medical Images
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Nathan R. Huber, Andrew D. Missert, and Bradley J. Erickson
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Noise ,Editorial ,Radiological and Ultrasound Technology ,Artificial Intelligence ,Computer science ,business.industry ,Radiology, Nuclear Medicine and imaging ,Pattern recognition ,Artificial intelligence ,business ,Convolutional neural network - Abstract
This article shows how to train a convolutional neural network to reduce noise in CT images, although the principles apply to medical and nonmedical images; authors also explore mathematical and visually weighted loss functions to adjust the appearance.
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- 2020
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