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Your search keyword '"Naumenko, Anastasia N."' showing total 18 results
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18 results on '"Naumenko, Anastasia N."'

1. The chromosome-scale genome assembly for the West Nile vector Culex quinquefasciatus uncovers patterns of genome evolution in mosquitoes

Author

Ryazansky, Sergei S., Chen, Chujia, Potters, Mark, Naumenko, Anastasia N., Lukyanchikova, Varvara, Masri, Reem A., Brusentsov, Ilya I., Karagodin, Dmitriy A., Yurchenko, Andrey A., dos Anjos, Vitor L., Haba, Yuki, Rose, Noah H., Hoffman, Jinna, Guo, Rong, Menna, Theresa, Kelley, Melissa, Ferrill, Emily, Schultz, Karen E., Qi, Yumin, Sharma, Atashi, Deschamps, Stéphane, Llaca, Victor, Mao, Chunhong, Murphy, Terence D., Baricheva, Elina M., Emrich, Scott, Fritz, Megan L., Benoit, Joshua B., Sharakhov, Igor V., McBride, Carolyn S., Tu, Zhijian, and Sharakhova, Maria V.

Published
2024
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2. Phylogenomics revealed migration routes and adaptive radiation timing of Holarctic malaria mosquito species of the Maculipennis Group

Author

Yurchenko, Andrey A., Naumenko, Anastasia N., Artemov, Gleb N., Karagodin, Dmitry A., Hodge, James M., Velichevskaya, Alena I., Kokhanenko, Alina A., Bondarenko, Semen M., Abai, Mohammad R., Kamali, Maryam, Gordeev, Mikhail I., Moskaev, Anton V., Caputo, Beniamino, Aghayan, Sargis A., Baricheva, Elina M., Stegniy, Vladimir N., Sharakhova, Maria V., and Sharakhov, Igor V.

Published
2023
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5. Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes

Author

Neafsey, Daniel E, Waterhouse, Robert M, Abai, Mohammad R, Aganezov, Sergey S, Alekseyev, Max A, Allen, James E, Amon, James, Arcà, Bruno, Arensburger, Peter, Artemov, Gleb, Assour, Lauren A, Basseri, Hamidreza, Berlin, Aaron, Birren, Bruce W, Blandin, Stephanie A, Brockman, Andrew I, Burkot, Thomas R, Burt, Austin, Chan, Clara S, Chauve, Cedric, Chiu, Joanna C, Christensen, Mikkel, Costantini, Carlo, Davidson, Victoria LM, Deligianni, Elena, Dottorini, Tania, Dritsou, Vicky, Gabriel, Stacey B, Guelbeogo, Wamdaogo M, Hall, Andrew B, Han, Mira V, Hlaing, Thaung, Hughes, Daniel ST, Jenkins, Adam M, Jiang, Xiaofang, Jungreis, Irwin, Kakani, Evdoxia G, Kamali, Maryam, Kemppainen, Petri, Kennedy, Ryan C, Kirmitzoglou, Ioannis K, Koekemoer, Lizette L, Laban, Njoroge, Langridge, Nicholas, Lawniczak, Mara KN, Lirakis, Manolis, Lobo, Neil F, Lowy, Ernesto, MacCallum, Robert M, Mao, Chunhong, Maslen, Gareth, Mbogo, Charles, McCarthy, Jenny, Michel, Kristin, Mitchell, Sara N, Moore, Wendy, Murphy, Katherine A, Naumenko, Anastasia N, Nolan, Tony, Novoa, Eva M, O'Loughlin, Samantha, Oringanje, Chioma, Oshaghi, Mohammad A, Pakpour, Nazzy, Papathanos, Philippos A, Peery, Ashley N, Povelones, Michael, Prakash, Anil, Price, David P, Rajaraman, Ashok, Reimer, Lisa J, Rinker, David C, Rokas, Antonis, Russell, Tanya L, Sagnon, N'Fale, Sharakhova, Maria V, Shea, Terrance, Simão, Felipe A, Simard, Frederic, Slotman, Michel A, Somboon, Pradya, Stegniy, Vladimir, Struchiner, Claudio J, Thomas, Gregg WC, Tojo, Marta, Topalis, Pantelis, Tubio, José MC, Unger, Maria F, Vontas, John, Walton, Catherine, Wilding, Craig S, Willis, Judith H, Wu, Yi-Chieh, Yan, Guiyun, Zdobnov, Evgeny M, Zhou, Xiaofan, Catteruccia, Flaminia, Christophides, George K, Collins, Frank H, and Cornman, Robert S

Subjects
Biological Sciences, Bioinformatics and Computational Biology, Biomedical and Clinical Sciences, Genetics, Medical Microbiology, Infectious Diseases, Rare Diseases, Vector-Borne Diseases, Biotechnology, Malaria, Infection, Good Health and Well Being, Animals, Anopheles, Base Sequence, Chromosomes, Insect, Drosophila, Evolution, Molecular, Genome, Insect, Humans, Insect Vectors, Molecular Sequence Data, Phylogeny, Sequence Alignment, General Science & Technology
Abstract

Variation in vectorial capacity for human malaria among Anopheles mosquito species is determined by many factors, including behavior, immunity, and life history. To investigate the genomic basis of vectorial capacity and explore new avenues for vector control, we sequenced the genomes of 16 anopheline mosquito species from diverse locations spanning ~100 million years of evolution. Comparative analyses show faster rates of gene gain and loss, elevated gene shuffling on the X chromosome, and more intron losses, relative to Drosophila. Some determinants of vectorial capacity, such as chemosensory genes, do not show elevated turnover but instead diversify through protein-sequence changes. This dynamism of anopheline genes and genomes may contribute to their flexible capacity to take advantage of new ecological niches, including adapting to humans as primary hosts.

Published
2015

6. Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes.

Author

Neafsey, Daniel E, Waterhouse, Robert M, Abai, Mohammad R, Aganezov, Sergey S, Alekseyev, Max A, Allen, James E, Amon, James, Arcà, Bruno, Arensburger, Peter, Artemov, Gleb, Assour, Lauren A, Basseri, Hamidreza, Berlin, Aaron, Birren, Bruce W, Blandin, Stephanie A, Brockman, Andrew I, Burkot, Thomas R, Burt, Austin, Chan, Clara S, Chauve, Cedric, Chiu, Joanna C, Christensen, Mikkel, Costantini, Carlo, Davidson, Victoria LM, Deligianni, Elena, Dottorini, Tania, Dritsou, Vicky, Gabriel, Stacey B, Guelbeogo, Wamdaogo M, Hall, Andrew B, Han, Mira V, Hlaing, Thaung, Hughes, Daniel ST, Jenkins, Adam M, Jiang, Xiaofang, Jungreis, Irwin, Kakani, Evdoxia G, Kamali, Maryam, Kemppainen, Petri, Kennedy, Ryan C, Kirmitzoglou, Ioannis K, Koekemoer, Lizette L, Laban, Njoroge, Langridge, Nicholas, Lawniczak, Mara KN, Lirakis, Manolis, Lobo, Neil F, Lowy, Ernesto, MacCallum, Robert M, Mao, Chunhong, Maslen, Gareth, Mbogo, Charles, McCarthy, Jenny, Michel, Kristin, Mitchell, Sara N, Moore, Wendy, Murphy, Katherine A, Naumenko, Anastasia N, Nolan, Tony, Novoa, Eva M, O'Loughlin, Samantha, Oringanje, Chioma, Oshaghi, Mohammad A, Pakpour, Nazzy, Papathanos, Philippos A, Peery, Ashley N, Povelones, Michael, Prakash, Anil, Price, David P, Rajaraman, Ashok, Reimer, Lisa J, Rinker, David C, Rokas, Antonis, Russell, Tanya L, Sagnon, N'Fale, Sharakhova, Maria V, Shea, Terrance, Simão, Felipe A, Simard, Frederic, Slotman, Michel A, Somboon, Pradya, Stegniy, Vladimir, Struchiner, Claudio J, Thomas, Gregg WC, Tojo, Marta, Topalis, Pantelis, Tubio, José MC, Unger, Maria F, Vontas, John, Walton, Catherine, Wilding, Craig S, Willis, Judith H, Wu, Yi-Chieh, Yan, Guiyun, Zdobnov, Evgeny M, Zhou, Xiaofan, Catteruccia, Flaminia, Christophides, George K, Collins, Frank H, and Cornman, Robert S

Subjects
Animals, Humans, Anopheles, Drosophila, Malaria, Sequence Alignment, Insect Vectors, Evolution, Molecular, Phylogeny, Base Sequence, Molecular Sequence Data, Genome, Insect, Chromosomes, Insect, Evolution, Molecular, Genome, Insect, Chromosomes, General Science & Technology
Abstract

Variation in vectorial capacity for human malaria among Anopheles mosquito species is determined by many factors, including behavior, immunity, and life history. To investigate the genomic basis of vectorial capacity and explore new avenues for vector control, we sequenced the genomes of 16 anopheline mosquito species from diverse locations spanning ~100 million years of evolution. Comparative analyses show faster rates of gene gain and loss, elevated gene shuffling on the X chromosome, and more intron losses, relative to Drosophila. Some determinants of vectorial capacity, such as chemosensory genes, do not show elevated turnover but instead diversify through protein-sequence changes. This dynamism of anopheline genes and genomes may contribute to their flexible capacity to take advantage of new ecological niches, including adapting to humans as primary hosts.

Published
2015

7. Additional file 1 of Phylogenomics revealed migration routes and adaptive radiation timing of Holarctic malaria mosquito species of the Maculipennis Group

Author

Yurchenko, Andrey A., Naumenko, Anastasia N., Artemov, Gleb N., Karagodin, Dmitry A., Hodge, James M., Velichevskaya, Alena I., Kokhanenko, Alina A., Bondarenko, Semen M., Abai, Mohammad R., Kamali, Maryam, Gordeev, Mikhail I., Moskaev, Anton V., Caputo, Beniamino, Aghayan, Sargis A., Baricheva, Elina M., Stegniy, Vladimir N., Sharakhova, Maria V., and Sharakhov, Igor V.

Abstract

Additional file 1: Table S1. Statistics of the transcriptome assemblies for species of the Maculipennis Group. Table S2. Genes of An. atroparvus used as markers for detection of interspecies chromosome rearrangements on the X chromosome in five species of the Maculipennis Subgroup. Table S3. Mosquito species and sampling sites. Figure S1. A phylogenetic analysis of ortholog groups split into 4 equally-sized datasets based on the length of the alignments after trimal filtration. Figure S2. A phylogenetic analysis using whole-genome datasets from six Anopheles species.

Published
2023
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8. Phylogenomics revealed migration routes and adaptive radiation timing of Holarctic malaria vectors of the Maculipennis group

Author

Yurchenko, Andrey A., primary, Naumenko, Anastasia N., additional, Artemov, Gleb N., additional, Karagodin, Dmitry A., additional, Hodge, James M., additional, Velichevskaya, Alena I., additional, Kokhanenko, Alina A., additional, Bondarenko, Semen M., additional, Abai, Mohammad R., additional, Kamali, Maryam, additional, Gordeev, Mikhail I., additional, Moskaev, Anton V., additional, Caputo, Beniamino, additional, Aghayan, Sargis A., additional, Baricheva, Elina M., additional, Stegniy, Vladimir N., additional, Sharakhova, Maria V., additional, and Sharakhov, Igor V., additional

Published
2022
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13. A standard photomap of ovarian nurse cell chromosomes for the European malaria vector Anopheles atroparvus

Author

Artemov, Gleb N., Sharakhova, Maria V., Naumenko, Anastasia N., Karagodin, Dmitri A., Baricheva, Elina M., Stegniy, Vladimir N., and Sharakhov, Igor V.

Subjects
Anopheles, Genome, Insect, Animals, Chromosome Mapping, Female, Article, Insect Vectors, Malaria, Polytene Chromosomes
Abstract

Anopheles atroparvus (Diptera: Culicidae) is one of the main malaria vectors of the Maculipennis group in Europe. Cytogenetic analysis based on salivary gland chromosomes has been used in taxonomic and population genetic studies of mosquitoes from this group. However, a high-resolution cytogenetic map that could be used in physical genome mapping in An. atroparvus is still lacking. In the present study, a high-quality photomap of the polytene chromosomes from ovarian nurse cells of An. atroparvus was developed. Using fluorescent in situ hybridization, 10 genes from the five largest genomic supercontigs on the polytene chromosome were localized and 28% of the genome was anchored to the cytogenetic map. The study established chromosome arm homology between An. atroparvus and the major African malaria vector Anopheles gambiae, suggesting a whole-arm translocation between autosomes of these two species. The standard photomap constructed for ovarian nurse cell chromosomes of An. atroparvus will be useful for routine physical mapping. This map will assist in the development of a fine-scale chromosome-based genome assembly for this species and will also facilitate comparative and evolutionary genomics studies in the genus Anopheles.

Published
2015

14. Correction: Mitotic-Chromosome-Based Physical Mapping of the Culex quinquefasciatus Genome

Author

Naumenko, Anastasia N., Timoshevskiy, Vladimir A., Kinney, Nicholas A., Kokhanenko, Alina A., deBruyn, Becky S., Lovin, Diane D., Stegniy, Vladimir N., Severson, David W., Sharakhov, Igor V., Sharakhova, Maria V., Biological Sciences, Entomology, and Fralin Life Sciences Institute

Subjects
GeneralLiterature_REFERENCE(e.g.,dictionaries,encyclopedias,glossaries)
Abstract

Correction Published version

Published
2015

16. Partial-arm translocations in evolution of malaria mosquitoes revealed by high-coverage physical mapping of the <italic>Anopheles atroparvus</italic> genome.

Author

Artemov, Gleb N., Bondarenko, Semen M., Naumenko, Anastasia N., Stegniy, Vladimir N., Sharakhova, Maria V., and Sharakhov, Igor V.

Subjects
ANIMAL genome mapping, INSECT genetics, ANOPHELES, INSECT evolution, GENE mapping, CHROMOSOMES, KARYOTYPES, PHYSIOLOGY
Abstract

Background: Malaria mosquitoes have had a remarkable stability in the number of chromosomes in their karyotype (2n = 6) during 100 million years of evolution. Moreover, autosomal arms were assumed to maintain their integrity even if their associations with each other changed via whole-arm translocations. Here we use high-coverage comparative physical genome mapping of three Anopheles species to test the extent of evolutionary conservation of chromosomal arms in malaria mosquitoes. Results: In this study, we developed a physical genome map for Anopheles atroparvus, one of the dominant malaria vectors in Europe. Using fluorescence in situ hybridization (FISH) of DNA probes with the ovarian nurse cell polytene chromosomes and synteny comparison, we anchored 56 genomic scaffolds to the An. atroparvus chromosomes. The obtained physical map represents 89.6% of the An. atroparvus genome. This genome has the second highest mapping coverage among Anophelinae assemblies after An. albimanus, which has 98.2% of the genome assigned to its chromosomes. A comparison of the An. atroparvus, An. albimanus, and An. gambiae genomes identified partial-arm translocations between the autosomal arms that break down the integrity of chromosome elements in evolution affecting the structure of the genetic material in the pericentromeric regions. Unlike An. atroparvus and An. albimanus, all chromosome elements of An. gambiae are fully syntenic with chromosome elements of the putative ancestral Anopheles karyotype. We also detected nonrandom distribution of large conserved synteny blocks and confirmed a higher rate of inversion fixation in the X chromosome compared with autosomes. Conclusions: Our study demonstrates the power of physical mapping for understanding the genome evolution in malaria mosquitoes. The results indicate that syntenic relationships among chromosome elements of Anopheles species have not been fully preserved because of multiple partial-arm translocations. [ABSTRACT FROM AUTHOR]

Published
2018
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