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The Norway lobster (Nephrops norvegicus) is one of the most important decapod crustacean seafood species in the Adriatic Sea. Previous research has identified significant differences in growth rates and maturation timing of Nephrops in the Pomo/Jabuka Pits area compared to other subpopulations in Adriatic fishing grounds. Here, we use 1,623 genome-wide single nucleotide polymorphisms (SNPs) to investigate whether the Pomo Pits subpopulation is genetically different from other sites in the Adriatic and neighbouring seas. We found no genetic differentiation among all sampled Adriatic sites, suggesting high gene flow between Pomo Pits Nephrops and those of surrounding areas. We also found genetic homogeneity between the Adriatic sites and single-site samples from the Aegean and Tyrrhenian Seas. However, we detected distinct genetic differentiation between all Mediterranean sites and an Atlantic site in western Scotland, which provides evidence for a phylogenetic break between the Atlantic and the Mediterranean. Our results indicate that Pomo Pits Nephrops are not genetically different from others sampled in the Adriatic and that key biological parameters in Pomo Pits Nephrops could be driven by spatial variation in fishing pressure and/or environmental factors rather than geographic isolation. [ABSTRACT FROM AUTHOR]

The Norway lobster (Nephrops norvegicus) is one of the most important fishery items for the EU blue economy. This paper describes a software architecture based on neural networks, designed to identify the presence of N. norvegicus and estimate the number of its individuals per square meter (i.e. stock density) in deep-sea (350–380 m depth) Fishery No-Take Zones of the northwestern Mediterranean. Inferencing models were obtained by training open-source networks with images obtained from frames partitioning of in submarine vehicle videos. Animal detections were also tracked in successive frames of video sequences to avoid biases in individual recounting, offering significant success and precision in detection and density estimations. [ABSTRACT FROM AUTHOR]

The Norway lobster (Nephrops norvegicus) is one of the most important decapod crustacean seafood species in the Adriatic Sea. Previous research has identified significant differences in growth rates and maturation timing of Nephrops in the Pomo/Jabuka Pits area compared to other subpopulations in Adriatic fishing grounds. Here, we use 1,623 genome-wide single nucleotide polymorphisms (SNPs) to investigate whether the Pomo Pits subpopulation is genetically different from other sites in the Adriatic and neighbouring seas. We found no genetic differentiation among all sampled Adriatic sites, suggesting high gene flow between Pomo Pits Nephrops and those of surrounding areas. We also found genetic homogeneity between the Adriatic sites and single-site samples from the Aegean and Tyrrhenian Seas. However, we detected distinct genetic differentiation between all Mediterranean sites and an Atlantic site in western Scotland, which provides evidence for a phylogenetic break between the Atlantic and the Mediterranean. Our results indicate that Pomo Pits Nephrops are not genetically different from others sampled in the Adriatic and that key biological parameters in Pomo Pits Nephrops could be driven by spatial variation in fishing pressure and/or environmental factors rather than geographic isolation.

Simple Summary: In this study, we describe the structure of the Norwegian lobster (Nephops norvegicus) statocyst using scanning and transmission electron microscopy. These results contribute to our understanding of sound perception systems in an additional crustacean species in order to favor actions for marine noise pollution mitigation to protect the marine fauna. Statocyst anatomy and fine morphology in Norwegian lobster (Nephrops norvegicus) are studied for the first time using scanning and transmission electron microscopy. N. norvegicus exhibits sensory setae projecting from the statocyst inner cavity floor into a mass of sand granules (statoconia) embedded in a gelatinous substance. The setae are distributed in four areas: a curved field made up of an inner single row and an outer double row that run on a circle around the medial and lateral rim of the central depression, a small setal field in the posterior part, a large setal field, opposite to the small field, and a short row, running internally and lying parallel to the inner single row, next to the small setal field. A study of the fine morphology of the statocyst sensory setae shows that the structure of the setae in the different areas is similar, with a bulb (the proximal portion of the sensillum), a setal shaft, a tooth (the smooth portion of the bulb), a fulcrum (a transverse fold), and filamentous hairs. The hair cells are firmly implanted within the cuticular layer. Although the type of innervation of the statocyst was not determined in the present study, the close taxonomic position of the lobster to that of the crayfish and crab would suggest that the setae in N. norvegicus are pure mechanoreceptors rather than sensory cells. [ABSTRACT FROM AUTHOR]

Recent accumulation of evidence across taxa indicates that the ecological impacts of invasive alien species are predictable from their functional response (FR; e.g. the maximum feeding rate) and functional response ratio (FRR; the FR attack rate divided by handling time). Here, we experimentally derive these metrics to predict the ecological impacts of both juvenile and adult lionfish (Pterois volitans), one of the world’s most damaging invaders, across representative and likely future prey types. Potentially prey-population destabilizing Type II FRs were exhibited by both life stages of lionfish towards four prey species: Artemia salina, Gammarus oceanicus, Palaemonetes varians and Nephrops norvegicus. FR magnitudes revealed ontogenetic shifts in lionfish impacts where juvenile lionfish displayed similar if not higher consumption rates than adult lionfish towards prey, apart from N. norvegicus, where adult consumption rate was considerably higher. Additionally, lionfish FRR values were very substantially higher than mean FRR values across known damaging invasive taxa. Thus, both life stages of lionfish are predicted to contribute to differing but high ecological impacts across prey communities, including commercially important species. With lionfish invasion ranges currently expanding across multiple regions globally, efforts to reduce lionfish numbers and population size structure, with provision of prey refugia through habitat complexity, might curtail their impacts. Nevertheless, the present study indicates that management programmes to support early detection and complete eradication of lionfish individuals when discovered in new regions are advised.

Statocyst anatomy and fine morphology in Norwegian lobster (Nephrops norvegicus) are studied for the first time using scanning and transmission electron microscopy. N. norvegicus exhibits sensory setae projecting from the statocyst inner cavity floor into a mass of sand granules (statoconia) embedded in a gelatinous substance. The setae are distributed in four areas: a curved field made up of an inner single row and an outer double row that run on a circle around the medial and lateral rim of the central depression, a small setal field in the posterior part, a large setal field, opposite to the small field, and a short row, running internally and lying parallel to the inner single row, next to the small setal field. A study of the fine morphology of the statocyst sensory setae shows that the structure of the setae in the different areas is similar, with a bulb (the proximal portion of the sensillum), a setal shaft, a tooth (the smooth portion of the bulb), a fulcrum (a transverse fold), and filamentous hairs. The hair cells are firmly implanted within the cuticular layer. Although the type of innervation of the statocyst was not determined in the present study, the close taxonomic position of the lobster to that of the crayfish and crab would suggest that the setae in N. norvegicus are pure mechanoreceptors rather than sensory cells.

Size selection in creel fishery consists of two processes: the first taking place in the creel on the seabed and the second made by the fisher on the vessel. However, no study has ever considered both processes when assessing the size selection in creel fisheries. This study presents a framework for including both and demonstrates it to predict the effect of mesh size and shape on the creel fishery targeting the Norway lobster (Nephrops norvegicus) in the Mediterranean Sea. For this specific fishery, we demonstrate that both processes play a role in the overall size selection. Furthermore, we predict an optimal creel mesh size, which potentially eliminates the second process taking place on the vessel, while maintaining high efficiency for the first process on the seabed for the targeted sizes of Nephrops. The approach here presented can be also applied to other creel fisheries. [ABSTRACT FROM AUTHOR]

The current European Union fisheries policy encourages improving handling practices to increase the survival of discards. Trawling on the Mediterranean upper slope often generates over 30% of discards of the total catch. Among other species, Nephrops norvegicus juveniles are abundantly returned to the sea, sometimes exceeding 40% of discarded biomass. N. norvegicus discard survival probability has been recently shown to be related to vitality on board and to vary seasonally, being especially low during the summer (0.06). Environmental characteristics (especially, high on-deck temperature in summer) make it necessary to improve vitality on board in order to increase discard survival. We therefore tested new discard handling methodologies for a Mediterranean mixed trawl fishery, with N. norvegicus as the target species. The results showed a survival rate on board higher than 0.8 resulting from vitality status improvements achieved by immersing N. norvegicus in cooled seawater on board during the catch selection and discard time. The implementation of this method would make an important contribution to more sustainable Mediterranean trawl fisheries.

The Norway lobster, Nephrops norvegicus, supports a key European fishery. Stock assessments for this species are mostly based on trawling and UnderWater TeleVision (UWTV) surveys. However, N. norvegicus are burrowing organisms and these survey methods are unable to sample or observe individuals in their burrows. To account for this, UWTV surveys generally assume that “1 burrow system = 1 animal”, due to the territorial behavior of N. norvegicus. Nevertheless, this assumption still requires in-situ validation. Here, we outline how to improve the accuracy of current stock assessments for N. norvegicus with novel ecological monitoring technologies, including: robotic fixed and mobile camera-platforms, telemetry, environmental DNA (eDNA), and Artificial Intelligence (AI). First, we outline the present status and threat for overexploitation in N. norvegicus stocks. Then, we discuss how the burrowing behavior of N. norvegicus biases current stock assessment methods. We propose that state-of-the-art stationary and mobile robotic platforms endowed with innovative sensors and complemented with AI tools could be used to count both animals and burrows systems in-situ, as well as to provide key insights into burrowing behavior. Next, we illustrate how multiparametric monitoring can be incorporated into assessments of physiology and burrowing behavior. Finally, we develop a flowchart for the appropriate treatment of multiparametric biological and environmental data required to improve current stock assessment methods.

With the evolution of the convolutional neural network (CNN), object detection in the underwater environment has gained a lot of attention. However, due to the complex nature of the underwater environment, generic CNN-based object detectors still face challenges in underwater object detection. These challenges include image blurring, texture distortion, color shift, and scale variation, which result in low precision and recall rates. To tackle this challenge, we propose a detection refinement algorithm based on spatial–temporal analysis to improve the performance of generic detectors by suppressing the false positives and recovering the missed detections in underwater videos. In the proposed work, we use state-of-the-art deep neural networks such as Inception, ResNet50, and ResNet101 to automatically classify and detect the Norway lobster Nephrops norvegicus burrows from underwater videos. Nephrops is one of the most important commercial species in Northeast Atlantic waters, and it lives in burrow systems that it builds itself on muddy bottoms. To evaluate the performance of proposed framework, we collected the data from the Gulf of Cadiz. From experiment results, we demonstrate that the proposed framework effectively suppresses false positives and recovers missed detections obtained from generic detectors. The mean average precision (mAP) gained a 10% increase with the proposed refinement technique. [ABSTRACT FROM AUTHOR]

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Dispersal of meroplankton larvae in the ocean is a key process which determines larval supply to areas of suitable habitat and enables connectivity between populations, particularly for nonmigratory species. Our objective was to use a biophysical larval transport model to create a time series (2000–2019) of larval retention, dispersal distance and connectivity estimates for the commercially important Norway lobster (Nephrops norvegicus) on mud grounds off Ireland. Where time series of population estimates were sufficiently long to conduct analysis, we also investigated if larval dispersal indices could be used to predict variations in adult density, after a lag period, hypothesising that this would only apply to grounds with consistently low larval supply. Grounds off Ireland had varying characteristics related to their ability to retain and exchange larvae which was influenced by the local hydrodynamic regime and spatial isolation from other grounds. Larval supply was consistently low on the Aran grounds to the west of Ireland, which have experienced abundance declines in the past. The time series of modelled larval dispersal indices at the Aran grounds was linked to empirical adult burrow densities with a 3‐year lag. Whereas the western Irish Sea, which has consistently high larval supply, showed no such relationship. Models can provide important larval recruitment information early in the life cycle for species of commercial or conservation importance. [ABSTRACT FROM AUTHOR]

: The Norway lobster, Nephrops norvegicus, is one of the main commercial crustacean fisheries in Europe. The abundance of Nephrops norvegicus stocks is assessed based on identifying and counting the burrows where they live from underwater videos collected by camera systems mounted on sledges. The Spanish Oceanographic Institute (IEO) and Marine Institute Ireland (MIIreland) conducts annual underwater television surveys (UWTV) to estimate the total abundance of Nephrops within the specified area, with a coefficient of variation (CV) or relative standard error of less than 20%. Currently, the identification and counting of the Nephrops burrows are carried out manually by the marine experts. This is quite a time-consuming job. As a solution, we propose an automated system based on deep neural networks that automatically detects and counts the Nephrops burrows in video footage with high precision. The proposed system introduces a deep-learning-based automated way to identify and classify the Nephrops burrows. This research work uses the current state-of-the-art Faster RCNN models Inceptionv2 and MobileNetv2 for object detection and classification. We conduct experiments on two data sets, namely, the Smalls Nephrops survey (FU 22) and Cadiz Nephrops survey (FU 30), collected by Marine Institute Ireland and Spanish Oceanographic Institute, respectively. From the results, we observe that the Inception model achieved a higher precision and recall rate than the MobileNet model. The best mean Average Precision (mAP) recorded by the Inception model is 81.61% compared to MobileNet, which achieves the best mAP of 75.12%. [ABSTRACT FROM AUTHOR]

Recent accumulation of evidence across taxa indicates that the ecological impacts of invasive alien species are predictable from their functional response (FR; e.g. the maximum feeding rate) and functional response ratio (FRR; the FR attack rate divided by handling time). Here, we experimentally derive these metrics to predict the ecological impacts of both juvenile and adult lionfish ( Pterois volitans ), one of the world's most damaging invaders, across representative and likely future prey types. Potentially prey-population destabilizing Type II FRs were exhibited by both life stages of lionfish towards four prey species: Artemia salina , Gammarus oceanicus , Palaemonetes varians and Nephrops norvegicus . FR magnitudes revealed ontogenetic shifts in lionfish impacts where juvenile lionfish displayed similar if not higher consumption rates than adult lionfish towards prey, apart from N. norvegicus , where adult consumption rate was considerably higher. Additionally, lionfish FRR values were very substantially higher than mean FRR values across known damaging invasive taxa. Thus, both life stages of lionfish are predicted to contribute to differing but high ecological impacts across prey communities, including commercially important species. With lionfish invasion ranges currently expanding across multiple regions globally, efforts to reduce lionfish numbers and population size structure, with provision of prey refugia through habitat complexity, might curtail their impacts. Nevertheless, the present study indicates that management programmes to support early detection and complete eradication of lionfish individuals when discovered in new regions are advised., Competing Interests: We declare we have no competing interests., (© 2024 The Author(s).)

Recreational fishers often consume their catch, which may expose them to environmental contaminants. However, targeted risk assessment for exceeding the tolerable weekly intake (TWI) of a specific contaminant is often lacking, as specific data on the extent of fishing, consumption rates, and contamination of the caught seafood is needed. This study examined recreational fishing for nephrops (Nephrops norvegicus) at several different locations in Western Norway to identify important risk factors. The combination of a field survey to examine actual catches, interviews of recreational fishers about their seafood eating habits, and the analysis of total mercury (Hg, as a proxy for methylmercury (MeHg)) in recreationally captured nephrops allowed to conduct a targeted risk assessment. Recreational fishers consumed on average seven nephrops per meal, and 73% of the fishers ate nephrops once a month or more. The average Hg concentrations in nephrops were below the legal maximum level (100 ± 50 μg/kg wet weight (mean ± SD)). Hg concentrations in female nephrops were significantly higher than in males at the same size, and differed significantly between locations. The recreational fishers in this study were not at risk of exceeding the TWI for MeHg from consuming nephrops only; however, there is a general risk of exceeding TWI for MeHg as 70% of the fishers reported a frequent consumption of fish for dinner. Targeted risk assessments on recreational fishers may reveal particularly vulnerable populations where national dietary surveys may miss the highest seafood consumers. [ABSTRACT FROM AUTHOR]

Knowledge of connectivity among subpopulations is fundamental in the identification of the appropriate geographical scales for stock status evaluation and management, the identification of areas with greater retention rates, and space‐based fisheries management. Here, an integration of hydrodynamic, biological, and habitat models results is used to assess connectivity and support the definition of essential fish habitats (EFH) in the Adriatic Sea, with reference to Nephrops norvegicus, an important benthic commercial resource, the recruitment of which is strongly related to larval dispersal from spawning to recruitment areas. We explored oceanographic and biological connectivity in the Adriatic Sea under a wide and representative variety of oceanographic conditions (winters 2006–2012) by tracking 3D trajectories of larvae released from different areas. We used a Lagrangian model that features a specific larval behavior module with explicit dependence on environmental parameters (i.e., temperature and sediment type) and that is driven by high‐resolution hydrodynamic and meteorological data. The results were used to partition the area in which Nephrops was observed into 20 homogenous management subareas; to assess the connection between spawning, recruitment, and harvesting grounds; and to identify potential subpopulation boundaries as well as the connectivity among the potential subpopulations. The results suggest the presence of at least three distinct subpopulations, which need to be independently managed and conserved, and confirms that the Jabuka‐Pomo pit is the most important spawning area, but alone it cannot sustain Nephrops populations throughout the Adriatic Sea. The results also show the importance to move from particle‐tracking to approaches based on integrated models. [ABSTRACT FROM AUTHOR]

The main characteristics concerning the distribution of two of the most important decapod crustaceans of commercial interest in the Mediterranean Sea, the deep-water rose shrimp, Parapenaeus longirostris, and the Norway lobster, Nephrops norvegicus, are studied in the European Mediterranean waters. The study is based on data collected under the MEDITS trawl surveys from 1994 to 2015 from the Gibraltar Straits to the northeastern Levantine Basin (Cyprus waters). The observed differences can be interpreted as different responses to environmental drivers related to the differing life history traits of the two species. In fact, N. norvegicus is a long-living, benthic burrowing species with low growth and mortality rates, while P. longirostris is an epibenthic, short-living species characterized by higher rates of growth and mortality.

Abstract Background Comprehensively detailed information on population dynamics for benthic species is crucial since potential admixture of individuals could shift the genetic subdivision and age structure during a full breeding period. The apparent genetic impact of the potential recruitment strategy of Norway lobster Nephrops norvegicus is still under research. For this reason the present study was focused on genetic variation of the species over a given continuous year period in a semi-enclosed gulf of the Aegean Sea. Results Analyses revealed that the relative smaller size class in females and the apparent faster growth of males may represent a key-role differential strategy for the two sexes, whereas females tend to mature slower. Heterozygosity fitness correlations (HFCs) showed substantially significant associations suggesting that inbreeding depression for females and outbreeding depression for males are the proximate fitness mechanisms, respectively. Conclusions Nephrops norvegicus uniformal genetic composition (background of high gene flow), could be attributed to potential population recolonization, due to a hypothesized passive larval movement from deeper waters, which may suggest that some offspring of local residents and potential male non-breeders from other regions admixture randomly.

With the evolution of the convolutional neural network (CNN), object detection in the underwater environment has gained a lot of attention. However, due to the complex nature of the underwater environment, generic CNN-based object detectors still face challenges in underwater object detection. These challenges include image blurring, texture distortion, color shift, and scale variation, which result in low precision and recall rates. To tackle this challenge, we propose a detection refinement algorithm based on spatial–temporal analysis to improve the performance of generic detectors by suppressing the false positives and recovering the missed detections in underwater videos. In the proposed work, we use state-of-the-art deep neural networks such as Inception, ResNet50, and ResNet101 to automatically classify and detect the Norway lobster Nephrops norvegicus burrows from underwater videos. Nephrops is one of the most important commercial species in Northeast Atlantic waters, and it lives in burrow systems that it builds itself on muddy bottoms. To evaluate the performance of proposed framework, we collected the data from the Gulf of Cadiz. From experiment results, we demonstrate that the proposed framework effectively suppresses false positives and recovers missed detections obtained from generic detectors. The mean average precision (mAP) gained a 10% increase with the proposed refinement technique.

Abstract Background The Norway lobster, Nephrops norvegicus, is economically important in European fisheries and is a key organism in local marine ecosystems. Despite multi-faceted scientific interest in this species, our current knowledge of genetic resources in this species remains very limited. Here, we generated a reference de novo transcriptome for N. norvegicus from multiple tissues in both sexes. Bioinformatic analyses were conducted to detect transcripts that were expressed exclusively in either males or females. Patterns were validated via RT-PCR. Results Sixteen N. norvegicus libraries were sequenced from immature and mature ovary, testis and vas deferens (including the masculinizing androgenic gland). In addition, eyestalk, brain, thoracic ganglia and hepatopancreas tissues were screened in males and both immature and mature females. RNA-Sequencing resulted in >600 million reads. De novo assembly that combined the current dataset with two previously published libraries from eyestalk tissue, yielded a reference transcriptome of 333,225 transcripts with an average size of 708 base pairs (bp), with an N50 of 1272 bp. Sex-specific transcripts were detected primarily in gonads followed by hepatopancreas, brain, thoracic ganglia, and eyestalk, respectively. Candidate transcripts that were expressed exclusively either in males or females were highlighted and the 10 most abundant ones were validated via RT-PCR. Among the most highly expressed genes were Serine threonine protein kinase in testis and Vitellogenin in female hepatopancreas. These results align closely with gene annotation results. Moreover, a differential expression heatmap showed that the majority of differentially expressed transcripts were identified in gonad and eyestalk tissues. Results indicate that sex-specific gene expression patterns in Norway lobster are controlled by differences in gene regulation pattern between males and females in somatic tissues. Conclusions The current study presents the first multi-tissue reference transcriptome for the Norway lobster that can be applied to future biological, wild restocking and fisheries studies. Sex-specific markers were mainly expressed in males implying that males may experience stronger selection than females. It is apparent that differential expression is due to sex-specific gene regulatory pathways that are present in somatic tissues and not from effects of genes located on heterogametic sex chromosomes. The N. norvegicus data provide a foundation for future gene-based reproductive studies.

In the laboratory, we investigated which sizes of Nephrops ( Nephrops norvegicus ) could pass through the meshes of different size and shape to establish a predictive model for the creels size selectivity. Predictions agreed well with the results from experimental fishing, demonstrating the reliability of this simple method. Nephrops minimum target size is 20 mm carapace length in the Mediterranean creel fishery, with some areas having restrictions on the mesh size, minimum being 36 or 40 mm. The model predicts that Nephrops below 28 and 32 mm carapace length would escape from creels with respectively 36 and 40 mm mesh size, implying a suboptimal exploitation pattern. Our method provides easy and quick identification of optimal mesh size and shape without the exhaustive sea trials with various creel designs. It was predicted that a square mesh of 30 mm would better match the desired exploitation pattern. The method could easily be adopted to other species and different creel fisheries, helping to determine optimal mesh matching a prescribed exploitation pattern. [ABSTRACT FROM AUTHOR]

Metallothioneins content was investigated in digestive gland of two wild-caught Norway lobster Nephrops norvegicus populations from the Northern Adriatic Sea, in relation to body size, season and gender. Concomitant accumulation of cadmium, mercury, arsenic, lead, chromium and manganese, reactive oxygen species concentration and energy reserves in digestive gland were also assessed. While differences between genders were not recorded, metallothioneins content seasonal trends were affected by body size. Most of parameters displayed inconsistent trends across sampling sites. Significant correlation between metallothioneins content and cadmium, arsenic and mercury concentrations was recorded only for larger lobsters. A negative correlation of reactive oxygen species concentration and metallothioneins content was observed for small, but not large lobsters. Energy reserves, in particular lipids, could considerably influence biochemical and chemical parameters variations. The present results constitute the essential baseline for future studies aimed at evaluating the N. norvegicus health in relation to metal contamination of coastal sediments. [ABSTRACT FROM AUTHOR]

In the Mediterranean Sea Nephrops ( Nephrops norvegicus ) is predominantly caught with bottom trawls, but it is also harvested with creels. While the size selection of Nephrops in bottom trawls is well documented, there is no previous information on creel size selection for this species. Therefore, sea trials were carried out to assess the selective properties of commercial creels with 41 mm mesh size netting mounted as a square mesh netting as prescribed by the legislation. Creel size selection was assessed for Nephrops and two main crustacean bycatch species: mantis shrimp ( Squilla mantis ) and blue-leg swimming crab ( Liocarcinus depurator ). The influence of the soak time on creel selectivity was also investigated, and no significant difference was detected between one and two day soak times. The average carapace length of a crustacean with 50% probability of being retained (L50) was 31.69 mm for Nephrops , which is 59% larger than the minimum landing size (MLS) set by the fishery regulation, therefore demonstrating a mismatch between MLS and gear selectivity in this fishery. Comparison of creel selectivity obtained in our study with the historical results obtained from commercial bottom trawl selectivity studies for Nephrops in the Mediterranean Sea demonstrated that the creel L50 was significantly higher than in the trawl fishery, this implies that creel fishery is targeting larger Nephrops than trawl fishery. [ABSTRACT FROM AUTHOR]

In the context of the landing obligation set by the new Common Fisheries Policy (CFP), Norway lobster Nephrops norvegicus was identified as a species likely to have high survival rate when discarded in the bottom trawl fishery of the Bay of Biscay. Previous studies in this area reported a survival rate between 30% and 51%, but the experiments were done on a limited monitoring period and the seasonal variations were not investigated. This study was designed to obtain a reliable value for survival rate after a 14-day monitoring period in onshore tanks allowing considering delayed mortality. The study also tested the effect on the survival rate of using a discarding chute system, a sorting device that was made mandatory on the 1st of January 2017 for Nephrops trawlers in the Bay of Biscay. This device, which enables fishermen to discard undersized Nephrops back to the sea while sorting, led to an increased average survival rate (51.2%) compared with the standard sorting practice (36.9%). The impact of biological, environmental and fishing operation related variables on survival from the first day of captivity to the end of the monitoring period was examined using a generalized linear model. The results of the GLM indicate that injuries, season and duration of the air exposure, significantly influence the survival from the 1st day of captivity to the end of the monitoring period. The survival rate was higher for non-injured Nephrops as well as for Nephrops that have undergone short air exposure, in summer and autumn. [ABSTRACT FROM AUTHOR]

In the past 40 years, the fishery in the Mediterranean Sea has seen numerous changes in technology, fleet composition, effort allocation, and management strategies. In this paper, our aim is to summarize the improvements, and highlight the flaws and difficulties that have characterized fisheries management in the Mediterranean Sea in the past decades. We (the authors) advocate the importance of the regionalization of the Common Fisheries Policy (CFP) in the Mediterranean. We focussed on the Adriatic Sea, with two case studies—the fishery for sardine and anchovy, and the fishery for Nephrops. The former is emblematic as it is one of the most valuable and well-studied fisheries in the Mediterranean but it is also an example of a management process that is slowly bearing fruit. Nephrops, on the other hand, has been facing the same destiny as other stocks in the Mediterranean; namely, its peculiar biology, a complex fishery, a poorly tailored data collection and inadequate assessments, have delayed action until very recent times. We use these examples to cover several aspects of Mediterranean fisheries management: (i) a historical overview of the development of these fisheries and their management; (ii) an overview of the main players involved in the scientific analysis and management process and their current and ideal roles; (iii) the flaws of the current stock assessment system; and (iv) recent developments and potential solutions to comply with the latest reform of the CFP before 2020. We argue that to align Mediterranean management with the CFP and achieve MSY targets, the lack of coordination and definition of roles between the General Fisheries Commission for the Mediterranean, the European Commission Directorate-General for Maritime Affairs and Fisheries, the Scientific, Technical and Economic Committee for Fisheries and the Joint Research Centre need to be resolved. There is a need for adequate assessment models and data to answer increasingly complex management questions, as well as regular external review of the stock assessment models to assure their quality. Finally, the need for the implementation of a TAC system as an effective tool for Mediterranean fisheries to achieve sustainability is discussed and advocated.

Plastic debris acts as a sorbent phase for hydrophobic organic compounds like polychlorinated biphenyls (PCBs). Chemical partitioning models predict that the ingestion of microplastics with adsorbed chemicals in the field will tend not to result in significant net desorption of the chemical to the organism's tissues. This is expected due to the often limited differences in fugacity of the chemical between the indigestible plastic materials and the tissues, which are typically already exposed in the same environment to the same chemicals as the plastic. However laboratory trials validating these model predictions are scarce. In this study, PCB-loaded microplastics were offered to field-collected Norway lobsters ( Nephrops norvegicus) during in vivo feeding laboratory experiments. Each ingestion experiment was repeated with and without loading a mixture of ten PCB congeners onto plastic microspheres (MS) made of polyethylene (PE) and polystyrene (PS) with diameters of either 500–600 μm or 6 μm. We observed that the presence of chemicals adsorbed to ingested microplastics did not lead to significant bioaccumulation of the chemicals in the exposed organisms. There was a limited uptake of PCBs in Nephrop s tail tissue after ingestion of PCB-loaded PE MS, while almost no PCBs were detected in animals exposed to PS MS. In general, our results demonstrated that after 3 weeks of exposure the ingestion of plastic MS themselves did not affect the nutritional state of wild Nephrop s. [ABSTRACT FROM AUTHOR]

Background: The Norway lobster, Nephrops norvegicus, is economically important in European fisheries and is a key organism in local marine ecosystems. Despite multi-faceted scientific interest in this species, our current knowledge of genetic resources in this species remains very limited. Here, we generated a reference de novo transcriptome for N. norvegicus from multiple tissues in both sexes. Bioinformatic analyses were conducted to detect transcripts that were expressed exclusively in either males or females. Patterns were validated via RT-PCR. Results: Sixteen N. norvegicus libraries were sequenced from immature and mature ovary, testis and vas deferens (including the masculinizing androgenic gland). In addition, eyestalk, brain, thoracic ganglia and hepatopancreas tissues were screened in males and both immature and mature females. RNA-Sequencing resulted in >600 million reads. De novo assembly that combined the current dataset with two previously published libraries from eyestalk tissue, yielded a reference transcriptome of 333,225 transcripts with an average size of 708 base pairs (bp), with an N50 of 1272 bp. Sex-specific transcripts were detected primarily in gonads followed by hepatopancreas, brain, thoracic ganglia, and eyestalk, respectively. Candidate transcripts that were expressed exclusively either in males or females were highlighted and the 10 most abundant ones were validated via RT-PCR. Among the most highly expressed genes were Serine threonine protein kinase in testis and Vitellogenin in female hepatopancreas. These results align closely with gene annotation results. Moreover, a differential expression heatmap showed that the majority of differentially expressed transcripts were identified in gonad and eyestalk tissues. Results indicate that sex-specific gene expression patterns in Norway lobster are controlled by differences in gene regulation pattern between males and females in somatic tissues. Conclusions: The current study presents the first multi-tissue reference transcriptome for the Norway lobster that can be applied to future biological, wild restocking and fisheries studies. Sex-specific markers were mainly expressed in males implying that males may experience stronger selection than females. It is apparent that differential expression is due to sex-specific gene regulatory pathways that are present in somatic tissues and not from effects of genes located on heterogametic sex chromosomes. The N. norvegicus data provide a foundation for future gene-based reproductive studies. [ABSTRACT FROM AUTHOR]