1. Functional and Structural Characterization of PaeM, a Colicin M-like Bacteriocin Produced by Pseudomonas aeruginosa
- Author
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Marc Graille, Delphine Patin, Nathalie Josseaume, Martine Fourgeaud, Jean-Luc Mainardi, Herman van Tilbeurgh, Hélène Barreteau, Thierry Touzé, Mounira Tiouajni, Dominique Mengin-Lecreulx, Ahmed Bouhss, Michel Arthur, Didier Blanot, Institut de biochimie et biophysique moléculaire et cellulaire (IBBMC), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), Centre de Recherche des Cordeliers (CRC (UMR_S 872)), Université Pierre et Marie Curie - Paris 6 (UPMC)-Université Paris Descartes - Paris 5 (UPD5)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), and GRAILLE, Marc
- Subjects
Models, Molecular ,Crystallography, X-Ray ,medicine.disease_cause ,Biochemistry ,Protein Structure, Secondary ,Substrate Specificity ,Conserved sequence ,chemistry.chemical_compound ,Protein structure ,Bacteriocins ,Catalytic Domain ,Conserved Sequence ,0303 health sciences ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM] ,Lipid II ,food and beverages ,Anti-Bacterial Agents ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM] ,Colicin ,Pseudomonas aeruginosa ,lipids (amino acids, peptides, and proteins) ,colicin M ,[SDV.BBM.BS] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM] ,ColM ,GlcNAc ,Molecular Sequence Data ,Colicins ,Biology ,Microbiology ,MurNAc ,03 medical and health sciences ,Bacteriocin ,PaeM ,Escherichia coli ,medicine ,Amino Acid Sequence ,Molecular Biology ,030304 developmental biology ,Phosphoric Diester Hydrolases ,030306 microbiology ,Ni 2ϩ -nitrilotriacetic acid ,Cell Biology ,Periplasmic space ,biochemical phenomena, metabolism, and nutrition ,N-acetylglucosamine ,[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology ,Peptide Fragments ,ColM-like protein from P. aeruginosa ,Amino Acid Substitution ,chemistry ,Structural Homology, Protein ,Mutagenesis, Site-Directed ,bacteria ,Peptidoglycan ,[SDV.MP.BAC] Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology ,N-acetylmuramic acid ,Ni 2ϩ -NTA - Abstract
International audience; Colicin M (ColM) is the only enzymatic colicin reported to date that inhibits cell wall peptidoglycan biosynthesis. It catalyzes the specific degradation of the lipid intermediates involved in this pathway, thereby provoking lysis of susceptible Escherichia coli cells. A gene encoding a homologue of ColM was detected within the exoU-containing genomic island A carried by certain pathogenic Pseudomonas aeruginosa strains. This bacteriocin (pyocin) that we have named PaeM was crystallized, and its structure with and without an Mg2+ ion bound was solved. In parallel, site-directed mutagenesis of conserved PaeM residues from the C-terminal domain was performed, confirming their essentiality for the protein activity both in vitro (lipid II-degrading activity) and in vivo (cytotoxicity against a susceptible P. aeruginosa strain). Although PaeM is structurally similar to ColM, the conformation of their active sites differs radically; in PaeM, residues essential for enzymatic activity and cytotoxicity converge toward a same pocket, whereas in ColM they are spread along a particularly elongated active site. We have also isolated a minimal domain corresponding to the C-terminal half of the PaeM protein and exhibiting a 70-fold higher enzymatic activity as compared with the full-length protein. This isolated domain of the PaeM bacteriocin was further shown to kill E. coli cells when addressed to the periplasm of these bacteria.
- Published
- 2012