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1. Accuracy of three diagnostic tests to detect tooth resorption in unowned unsocialised cats in Denmark

Author

Eriksson, J., Denwood, M., Nielsen, S. S., McEvoy, F., Allberg, C., Thuesen, I. S., Kortegaard, H., Eriksson, J., Denwood, M., Nielsen, S. S., McEvoy, F., Allberg, C., Thuesen, I. S., and Kortegaard, H.

Abstract

Objectives: To estimate the relative diagnostic sensitivity and specificity of oral clinical examination, full-mouth dental radiography, and cone-beam CT for the detection of tooth resorption in cats, and to estimate the prevalence of tooth resorption in unowned, unsocialised cats in Denmark. Materials and Methods: Cadavers of 144 adult cats underwent an oral examination, full-mouth dental radiography, and cone-beam CT. Sensitivity and specificity of the three tests, along with the true prevalence, overall and stratified by sex and tooth location, were estimated using latent class methods. Results: We found cone-beam CT to be the superior image modality, with a sensitivity of 99.5% and a specificity of 99.8%. Dental radiography had a sensitivity of 78.9% and a specificity of 100%, and oral clinical examination had a sensitivity of only 36.0% and specificity of 99.9%. We estimated the prevalence of tooth resorption among unowned unsocialised cats in Denmark to be 40% of adult individuals, and 6.1% of teeth. Clinical Significance: When dealing with tooth resorption, cone-beam CT can help the operator to find and treat affected teeth that could otherwise go undiagnosed. The prevalence of tooth resorption among unowned, unsocialised cats in Denmark does not appear to differ from other populations of cats.

Published
2024

3. Co-designing a Canadian adaptation of a lifestyle-oriented intervention aimed to improve daily functioning of individuals living with chronic pain: a multi-method study protocol of REVEAL(OT) Canada

Author

Masse, J., primary, Nielsen, S. S., additional, Christensen, J. R., additional, Skou, S. T., additional, Côté, J., additional, Saunders, S., additional, Lagueux, É., additional, Boulanger, A., additional, Perez-Martinez, J., additional, Lussier, M., additional, and Pagé, M. G., additional

Published
2023
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4. Global plant trait relationships extend to the climatic extremes of the tundra biome

Author

Thomas, H. J. D., Bjorkman, A. D., Myers-Smith, I. H., Elmendorf, S. C., Kattge, J., Diaz, S., Vellend, M., Blok, D., Cornelissen, J. H. C., Forbes, B. C., Henry, G. H. R., Hollister, R. D., Normand, S., Prevéy, J. S., Rixen, C., Schaepman-Strub, G., Wilmking, M., Wipf, S., Cornwell, W. K., Beck, P. S. A., Georges, D., Goetz, S. J., Guay, K. C., Rüger, N., Soudzilovskaia, N. A., Spasojevic, M. J., Alatalo, J. M., Alexander, H. D., Anadon-Rosell, A., Angers-Blondin, S., te Beest, M., Berner, L. T., Björk, R. G., Buchwal, A., Buras, A., Carbognani, M., Christie, K. S., Collier, L. S., Cooper, E. J., Elberling, B., Eskelinen, A., Frei, E. R., Grau, O., Grogan, P., Hallinger, M., Heijmans, M. M. P. D., Hermanutz, L., Hudson, J. M. G., Johnstone, J. F., Hülber, K., Iturrate-Garcia, M., Iversen, C. M., Jaroszynska, F., Kaarlejarvi, E., Kulonen, A., Lamarque, L. J., Lantz, T. C., Lévesque, E., Little, C. J., Michelsen, A., Milbau, A., Nabe-Nielsen, J., Nielsen, S. S., Ninot, J. M., Oberbauer, S. F., Olofsson, J., Onipchenko, V. G., Petraglia, A., Rumpf, S. B., Shetti, R., Speed, J. D. M., Suding, K. N., Tape, K. D., Tomaselli, M., Trant, A. J., Treier, U. A., Tremblay, M., Venn, S. E., Vowles, T., Weijers, S., Wookey, P. A., Zamin, T. J., Bahn, M., Blonder, B., van Bodegom, P. M., Bond-Lamberty, B., Campetella, G., Cerabolini, B. E. L., Chapin, III, F. S., Craine, J. M., Dainese, M., Green, W. A., Jansen, S., Kleyer, M., Manning, P., Niinemets, Ü., Onoda, Y., Ozinga, W. A., Peñuelas, J., Poschlod, P., Reich, P. B., Sandel, B., Schamp, B. S., Sheremetiev, S. N., and de Vries, F. T.

Published
2020
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6. Product Quality Assurance Project for Teaching of Food Analysis

Author

Nielsen, S. S.

Abstract

Two of the challenges in teaching Food Analysis are bringing relevance to the various chemical and physical analyses discussed and exposing students to the realities of quality assurance in the food industry. In a project to help meet those objectives, each student, with the assistance of a "resource person" from the food industry, completes the project as if he or she is responsible for the quality assurance analyses of a specific food product in a food company. The student identifies the chemical, physical, sensory, and microbial analyses for raw ingredients, in-process products, and the finished product. The project requires the student to participate in related class discussion, prepare a final written report, and make a brief class presentation. Analysis of survey data showed the project was more than moderately relevant or useful to former students working in the food industry, and related directly to the initial or current positions of most former students.

Published
2004
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10. Examples of proper reporting for evaluation (Stage 2 validation) of diagnostic tests for diseases listed by the World Organisation for Animal Health

Author

Kostoulas, P., Gardner, I. A., Elschner, M. C., Denwood M, J., Meletis, L., and Nielsen, S. S.

Subjects
Diagnostic specificity, Diagnostic sensitivity, Validation pathway, Test validation, Infectious diseases, Aquatic animal, World Organisation for Animal Health guidelines, Bayesian latent class model, Terrestrial animals, Test accuracy, Wild mammals
Abstract

Reporting and design standards are key indicators of the quality of diagnostic accuracy (validation) studies but, with the exception of aquatic animal diseases and paratuberculosis in ruminants, there is limited guidance for designing these studies in animals. There is, therefore, a need for generic guidelines that are based on disease characteristics, such as mode of transmission, latent period and pathogenesis. Comprehensive, clear and transparent reporting of primary test accuracy studies for diseases listed by the World Organisation for Animal Health (OIE) has value for the end users of diagnostic tests and, ultimately, for decision-makers, who require systematic reviews and meta-analysis of multiple tests for specified diseases and testing purposes. The recent publication of reporting standards for Bayesian latent class models, to analyse test-accuracy data from naturally occurring disease events, fills an important gap as these methods are being increasingly used for OIE-listed diseases. Adherence to design and reporting standards, as well as to guidelines, helps to ensure that research funding for test validation studies is used appropriately and that the strengths and limitations of single tests or test combinations are made clear to test users. The authors provide a review of key points that are often overlooked or misinterpreted in test validation studies, as well as two concrete examples of good practice for use as a reference point for future studies.

Published
2021
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12. Changes in the soft-tissue thickness of the claw sole in Holstein heifers around calving

Author

Bach, K., Nielsen, S. S., Capion, N., Bach, K., Nielsen, S. S., and Capion, N.

Abstract

Claw horn disruption lesions are a common cause of lameness in dairy cattle. It is commonly agreed that they develop due to excessive pressure from the distal phalanx on the horn-producing tissue in the sole. The distal phalanx is supported by the suspensory apparatus, a large proportion of which is made up of connective tissue. It has been hypothesized that increased laxity of the connective tissue due to hormonal changes around calving may lead to decreased support of the distal phalanx, resulting in a sinking of the bone and increased pressure on the horn-producing tissue. In this longitudinal study, our first objective was to determine whether the thickness of the soft tissue related to the claw sole (the combined depth of the digital cushion and corium; soft-tissue thickness, STT) in the weight-bearing hind claws of live heifers changed around calving (the period from approximately 3 wk before calving to 2 wk after calving). Our second objective was to evaluate the relationship between the body condition score (BCS) of recruited heifers and the STT estimates we obtained. We measured STT (defined as the distance between the distal phalanx and the sole horn) in the apex and the posterior part of the sole of the hind claws of 34 Holstein heifers 4 times over 3 to 4 wk around calving. We determined STT by ultrasonographic measurements through the sole horn on weight-bearing claws. The overall mean STT at site 1 was 3.3 mm [minimum–maximum (min–max): 1.8 to 5.2 mm], and the mean at site 2 was 3.7 mm (min–max: 2.2 to 5.8). The overall mean STT was thickest in the first examination before calving [site 1: 3.4 mm (min–max: 1.9 to 4.7); site 2: 4.1 mm (min–max: 2.7 to 5.8)] and thinnest at site 1 in the second examination after calving (3.2 mm, min–max: 1.8 to 5.2) and at site 2 at the first examination after calving (3.5 mm, min–max: 2.2 to 5.0). We observed an average reduction in STT of −0.2 mm (min–max: 0.8 to −0.9 mm) at site 1 during the study period, but we di

Published
2021

13. Global plant trait relationships extend to the climatic extremes of the tundra biome

Author

Spatial Ecology and Global Change, Environmental Sciences, Thomas, H. J. D., Bjorkman, A. D., Myers-Smith, I. H., Elmendorf, S. C., Kattge, J., Diaz, S., Vellend, M., Blok, D., Cornelissen, J. H. C., Forbes, B. C., Henry, G. H. R., Hollister, R. D., Normand, S., Prevéy, J. S., Rixen, C., Schaepman-Strub, G., Wilmking, M., Wipf, S., Cornwell, W. K., Beck, P. S. A., Georges, D., Goetz, S. J., Guay, K. C., Rüger, N., Soudzilovskaia, N. A., Spasojevic, M. J., Alatalo, J. M., Alexander, H. D., Anadon-Rosell, A., Angers-Blondin, S., te Beest, M., Berner, L. T., Björk, R. G., Buchwal, A., Buras, A., Carbognani, M., Christie, K. S., Collier, L. S., Cooper, E. J., Elberling, B., Eskelinen, A., Frei, E. R., Grau, O., Grogan, P., Hallinger, M., Heijmans, M. M. P. D., Hermanutz, L., Hudson, J. M. G., Johnstone, J. F., Hülber, K., Iturrate-Garcia, M., Iversen, C. M., Jaroszynska, F., Kaarlejarvi, E., Kulonen, A., Lamarque, L. J., Lantz, T. C., Lévesque, E., Little, C. J., Michelsen, A., Milbau, A., Nabe-Nielsen, J., Nielsen, S. S., Ninot, J. M., Oberbauer, S. F., Olofsson, J., Onipchenko, V. G., Petraglia, A., Rumpf, S. B., Shetti, R., Speed, J. D. M., Suding, K. N., Tape, K. D., Tomaselli, M., Trant, A. J., Treier, U. A., Tremblay, M., Venn, S. E., Vowles, T., Weijers, S., Wookey, P. A., Zamin, T. J., Bahn, M., Blonder, B., van Bodegom, P. M., Bond-Lamberty, B., Campetella, G., Cerabolini, B. E. L., Chapin, F. S., Craine, J. M., Dainese, M., Green, W. A., Jansen, S., Kleyer, M., Manning, P., Niinemets, Ü., Onoda, Y., Ozinga, W. A., Peñuelas, J., Poschlod, P., Reich, P. B., Sandel, B., Schamp, B. S., Sheremetiev, S. N., de Vries, F. T., Spatial Ecology and Global Change, Environmental Sciences, Thomas, H. J. D., Bjorkman, A. D., Myers-Smith, I. H., Elmendorf, S. C., Kattge, J., Diaz, S., Vellend, M., Blok, D., Cornelissen, J. H. C., Forbes, B. C., Henry, G. H. R., Hollister, R. D., Normand, S., Prevéy, J. S., Rixen, C., Schaepman-Strub, G., Wilmking, M., Wipf, S., Cornwell, W. K., Beck, P. S. A., Georges, D., Goetz, S. J., Guay, K. C., Rüger, N., Soudzilovskaia, N. A., Spasojevic, M. J., Alatalo, J. M., Alexander, H. D., Anadon-Rosell, A., Angers-Blondin, S., te Beest, M., Berner, L. T., Björk, R. G., Buchwal, A., Buras, A., Carbognani, M., Christie, K. S., Collier, L. S., Cooper, E. J., Elberling, B., Eskelinen, A., Frei, E. R., Grau, O., Grogan, P., Hallinger, M., Heijmans, M. M. P. D., Hermanutz, L., Hudson, J. M. G., Johnstone, J. F., Hülber, K., Iturrate-Garcia, M., Iversen, C. M., Jaroszynska, F., Kaarlejarvi, E., Kulonen, A., Lamarque, L. J., Lantz, T. C., Lévesque, E., Little, C. J., Michelsen, A., Milbau, A., Nabe-Nielsen, J., Nielsen, S. S., Ninot, J. M., Oberbauer, S. F., Olofsson, J., Onipchenko, V. G., Petraglia, A., Rumpf, S. B., Shetti, R., Speed, J. D. M., Suding, K. N., Tape, K. D., Tomaselli, M., Trant, A. J., Treier, U. A., Tremblay, M., Venn, S. E., Vowles, T., Weijers, S., Wookey, P. A., Zamin, T. J., Bahn, M., Blonder, B., van Bodegom, P. M., Bond-Lamberty, B., Campetella, G., Cerabolini, B. E. L., Chapin, F. S., Craine, J. M., Dainese, M., Green, W. A., Jansen, S., Kleyer, M., Manning, P., Niinemets, Ü., Onoda, Y., Ozinga, W. A., Peñuelas, J., Poschlod, P., Reich, P. B., Sandel, B., Schamp, B. S., Sheremetiev, S. N., and de Vries, F. T.

Published
2020

14. Global plant trait relationships extend to the climatic extremes of the tundra biome

Author

Thomas, H. J. (H. J. D.), Bjorkman, A. D. (A. D.), Myers-Smith, I. H. (I. H.), Elmendorf, S. C. (S. C.), Kattge, J. (J.), Diaz, S. (S.), Vellend, M. (M.), Blok, D. (D.), Cornelissen, J. H. (J. H. C.), Forbes, B. C. (B. C.), Henry, G. H. (G. H. R.), Hollister, R. D. (R. D.), Normand, S. (S.), Prevey, J. S. (J. S.), Rixen, C. (C.), Schaepman-Strub, G. (G.), Wilmking, M. (M.), Wipf, S. (S.), Cornwell, W. K. (W. K.), Beck, P. S. (P. S. A.), Georges, D. (D.), Goetz, S. J. (S. J.), Guay, K. C. (K. C.), Ruger, N. (N.), Soudzilovskaia, N. A. (N. A.), Spasojevic, M. J. (M. J.), Alatalo, J. M. (J. M.), Alexander, H. D. (H. D.), Anadon-Rosell, A. (A.), Angers-Blondin, S. (S.), te Beest, M. (M.), Berner, L. T. (L. T.), Bjoerk, R. G. (R. G.), Buchwal, A. (A.), Buras, A. (A.), Carbognani, M. (M.), Christie, K. S. (K. S.), Collier, L. S. (L. S.), Cooper, E. J. (E. J.), Elberling, B. (B.), Eskelinen, A. (A.), Frei, E. R. (E. R.), Grau, O. (O.), Grogan, P. (P.), Hallinger, M. (M.), Heijmans, M. M. (M. M. P. D.), Hermanutz, L. (L.), Hudson, J. M. (J. M. G.), Johnstone, J. F. (J. F.), Huelber, K. (K.), Iturrate-Garcia, M. (M.), Iversen, C. M. (C. M.), Jaroszynska, F. (F.), Kaarlejarvi, E. (E.), Kulonen, A. (A.), Lamarque, L. J. (L. J.), Lantz, T. C. (T. C.), Levesque, E. (E.), Little, C. J. (C. J.), Michelsen, A. (A.), Milbau, A. (A.), Nabe-Nielsen, J. (J.), Nielsen, S. S. (S. S.), Ninot, J. M. (J. M.), Oberbauer, S. F. (S. F.), Olofsson, J. (J.), Onipchenko, V. G. (V. G.), Petraglia, A. (A.), Rumpf, S. B. (S. B.), Shetti, R. (R.), Speed, J. D. (J. D. M.), Suding, K. N. (K. N.), Tape, K. D. (K. D.), Tomaselli, M. (M.), Trant, A. J. (A. J.), Treier, U. A. (U. A.), Tremblay, M. (M.), Venn, S. E. (S. E.), Vowles, T. (T.), Weijers, S. (S.), Wookey, P. A. (P. A.), Zamin, T. J. (T. J.), Bahn, M. (M.), Blonder, B. (B.), van Bodegom, P. M. (P. M.), Bond-Lamberty, B. (B.), Campetella, G. (G.), Cerabolini, B. E. (B. E. L.), Chapin, F. S. (F. S., III), Craine, J. M. (J. M.), Dainese, M. (M.), Green, W. A. (W. A.), Jansen, S. (S.), Kleyer, M. (M.), Manning, P. (P.), Niinemets, U. (U.), Onoda, Y. (Y.), Ozinga, W. A. (W. A.), Penuelas, J. (J.), Poschlod, P. (P.), Reich, P. B. (P. B.), Sandel, B. (B.), Schamp, B. S. (B. S.), Sheremetiev, S. N. (S. N.), de Vries, F. T. (F. T.), Thomas, H. J. (H. J. D.), Bjorkman, A. D. (A. D.), Myers-Smith, I. H. (I. H.), Elmendorf, S. C. (S. C.), Kattge, J. (J.), Diaz, S. (S.), Vellend, M. (M.), Blok, D. (D.), Cornelissen, J. H. (J. H. C.), Forbes, B. C. (B. C.), Henry, G. H. (G. H. R.), Hollister, R. D. (R. D.), Normand, S. (S.), Prevey, J. S. (J. S.), Rixen, C. (C.), Schaepman-Strub, G. (G.), Wilmking, M. (M.), Wipf, S. (S.), Cornwell, W. K. (W. K.), Beck, P. S. (P. S. A.), Georges, D. (D.), Goetz, S. J. (S. J.), Guay, K. C. (K. C.), Ruger, N. (N.), Soudzilovskaia, N. A. (N. A.), Spasojevic, M. J. (M. J.), Alatalo, J. M. (J. M.), Alexander, H. D. (H. D.), Anadon-Rosell, A. (A.), Angers-Blondin, S. (S.), te Beest, M. (M.), Berner, L. T. (L. T.), Bjoerk, R. G. (R. G.), Buchwal, A. (A.), Buras, A. (A.), Carbognani, M. (M.), Christie, K. S. (K. S.), Collier, L. S. (L. S.), Cooper, E. J. (E. J.), Elberling, B. (B.), Eskelinen, A. (A.), Frei, E. R. (E. R.), Grau, O. (O.), Grogan, P. (P.), Hallinger, M. (M.), Heijmans, M. M. (M. M. P. D.), Hermanutz, L. (L.), Hudson, J. M. (J. M. G.), Johnstone, J. F. (J. F.), Huelber, K. (K.), Iturrate-Garcia, M. (M.), Iversen, C. M. (C. M.), Jaroszynska, F. (F.), Kaarlejarvi, E. (E.), Kulonen, A. (A.), Lamarque, L. J. (L. J.), Lantz, T. C. (T. C.), Levesque, E. (E.), Little, C. J. (C. J.), Michelsen, A. (A.), Milbau, A. (A.), Nabe-Nielsen, J. (J.), Nielsen, S. S. (S. S.), Ninot, J. M. (J. M.), Oberbauer, S. F. (S. F.), Olofsson, J. (J.), Onipchenko, V. G. (V. G.), Petraglia, A. (A.), Rumpf, S. B. (S. B.), Shetti, R. (R.), Speed, J. D. (J. D. M.), Suding, K. N. (K. N.), Tape, K. D. (K. D.), Tomaselli, M. (M.), Trant, A. J. (A. J.), Treier, U. A. (U. A.), Tremblay, M. (M.), Venn, S. E. (S. E.), Vowles, T. (T.), Weijers, S. (S.), Wookey, P. A. (P. A.), Zamin, T. J. (T. J.), Bahn, M. (M.), Blonder, B. (B.), van Bodegom, P. M. (P. M.), Bond-Lamberty, B. (B.), Campetella, G. (G.), Cerabolini, B. E. (B. E. L.), Chapin, F. S. (F. S., III), Craine, J. M. (J. M.), Dainese, M. (M.), Green, W. A. (W. A.), Jansen, S. (S.), Kleyer, M. (M.), Manning, P. (P.), Niinemets, U. (U.), Onoda, Y. (Y.), Ozinga, W. A. (W. A.), Penuelas, J. (J.), Poschlod, P. (P.), Reich, P. B. (P. B.), Sandel, B. (B.), Schamp, B. S. (B. S.), Sheremetiev, S. N. (S. N.), and de Vries, F. T. (F. T.)

Abstract

The majority of variation in six traits critical to the growth, survival and reproduction of plant species is thought to be organised along just two dimensions, corresponding to strategies of plant size and resource acquisition. However, it is unknown whether global plant trait relationships extend to climatic extremes, and if these interspecific relationships are confounded by trait variation within species. We test whether trait relationships extend to the cold extremes of life on Earth using the largest database of tundra plant traits yet compiled. We show that tundra plants demonstrate remarkably similar resource economic traits, but not size traits, compared to global distributions, and exhibit the same two dimensions of trait variation. Three quarters of trait variation occurs among species, mirroring global estimates of interspecific trait variation. Plant trait relationships are thus generalizable to the edge of global trait-space, informing prediction of plant community change in a warming world.

Published
2020

15. Differential somatic cell count as an additional indicator for intramammary infections in dairy cows

Author

Kirkeby, Carsten Thure, Toft, Nils, Schwarz, D., Farre, M., Nielsen, S S, Zervens, Lisa Marie-Louise, Hechinger, S., Halasa, Tariq Hisham Beshara, Kirkeby, Carsten Thure, Toft, Nils, Schwarz, D., Farre, M., Nielsen, S S, Zervens, Lisa Marie-Louise, Hechinger, S., and Halasa, Tariq Hisham Beshara

Abstract

Mastitis, often caused by intramammary infection (IMI), is a significant problem in dairy farming globally. Somatic cell count (SCC) is widely used as a parameter for screening IMI in cows that are then treated or culled. We investigated the potential of a new parameter, differential SCC (DSCC), to detect IMI at cow level when SCC is already known. We achieved this using bacterial culture (BC) and PCR to detect 4 categories of pathogens (major, minor, other, and any) in 2 Danish dairy herds. Quarter milk samples were collected from monthly dairy herd improvement samplings over 1 yr and analyzed with BC, whereas cow-level dairy herd improvement samples were analyzed using PCR. Days in milk, parity, and IMI status had a significant effect on DSCC. Using DSCC in addition to SCC significantly improved the indication of IMI compared with using only SCC in the any pathogen category in both herds as well as the minor pathogens category in herd 2 when BC was used for detection. When PCR was used to detect IMI, the use of DSCC in addition to SCC was significant for the other pathogens category in herd 1 and the minor pathogens category in herd 2. Thus, our data revealed that DSCC can add significant information describing IMI status even when SCC is already known; however, this depends on the causative pathogen. Future studies may address how to use DSCC in practice as well as consider the availability of temporal data to potentially gain insight into the course of infection.

Published
2020

20. Traditional plant functional groups explain variation in economic but not size‐related traits across the tundra biome

Author

Thomas, H. J. (H. J. D.), Myers‐Smith, I. H. (I. H.), Bjorkman, A. D. (A. D.), Elmendorf, S. C. (S. C.), Blok, D. (D.), Cornelissen, J. H. (J. H. C.), Forbes, B. C. (B. C.), Hollister, R. D. (R. D.), Normand, S. (S.), Prevéy, J. S. (J. S.), Rixen, C. (C.), Schaepman‐Strub, G. (G.), Wilmking, M. (M.), Wipf, S. (S.), Cornwell, W. K. (W. K.), Kattge, J. (J.), Goetz, S. J. (S. J.), Guay, K. C. (K. C.), Alatalo, J. M. (J. M.), Anadon‐Rosell, A. (A.), Angers‐Blondin, S. (S.), Berner, L. T. (L. T.), Björk, R. G. (R. G.), Buchwal, A. (A.), Buras, A. (A.), Carbognani, M. (M.), Christie, K. (K.), Siegwart Collier, L. (L.), Cooper, E. J. (E. J.), Eskelinen, A. (A.), Frei, E. R. (E. R.), Grau, O. (O.), Grogan, P. (P.), Hallinger, M. (M.), Heijmans, M. M. (M. M. P. D.), Hermanutz, L. (L.), Hudson, J. M. (J. M. G.), Hülber, K. (K.), Iturrate‐Garcia, M. (M.), Iversen, C. M. (C. M.), Jaroszynska, F. (F.), Johnstone, J. F. (J. F.), Kaarlejärvi, E. (E.), Kulonen, A. (A.), Lamarque, L. J. (L. J.), Lévesque, E. (E.), Michelsen, A. (A.), Milbau, A. (A.), Nabe‐Nielsen, J. (J.), Nielsen, S. S. (S. S.), Ninot, J. M. (J. M.), Oberbauer, S. F. (S. F.), Olofsson, J. (J.), Onipchenko, V. G. (V. G.), Petraglia, A. (A.), Rumpf, S. B. (S. B.), Semenchuk, P. R. (P. R.), Soudzilovskaia, N. A. (N. A.), Spasojevic, M. J. (M. J.), Speed, J. D. (J. D. M.), Tape, K. D. (K. D.), te Beest, M. (M.), Tomaselli, M. (M.), Trant, A. (A.), Treier, U. A. (U. A.), Venn, S. (S.), Vowles, T. (T.), Weijers, S. (S.), Zamin, T. (T.), Atkin, O. K. (O. K.), Bahn, M. (M.), Blonder, B. (B.), Campetella, G. (G.), Cerabolini, B. E. (B. E. L.), Chapin III, F. S. (F. S.), Dainese, M. (M.), de Vries, F. T. (F. T.), Díaz, S. (S.), Green, W. (W.), Jackson, R. B. (R. B.), Manning, P. (P.), Niinemets, Ü. (Ü.), Ozinga, W. A. (W. A.), Peñuelas, J. (J.), Reich, P. B. (P. B.), Schamp, B. (B.), Sheremetev, S. (S.), and van Bodegom, P. M. (P. M.)

Subjects
vegetation change, plant traits, ecosystem function, food and beverages, tundra biome, community composition, plant functional types, plant functional groups, cluster analysis
Abstract

Aim: Plant functional groups are widely used in community ecology and earth system modelling to describe trait variation within and across plant communities. However, this approach rests on the assumption that functional groups explain a large proportion of trait variation among species. We test whether four commonly used plant functional groups represent variation in six ecologically important plant traits. Location: Tundra biome. Time period: Data collected between 1964 and 2016. Major taxa studied: 295 tundra vascular plant species. Methods: We compiled a database of six plant traits (plant height, leaf area, specific leaf area, leaf dry matter content, leaf nitrogen, seed mass) for tundra species. We examined the variation in species‐level trait expression explained by four traditional functional groups (evergreen shrubs, deciduous shrubs, graminoids, forbs), and whether variation explained was dependent upon the traits included in analysis. We further compared the explanatory power and species composition of functional groups to alternative classifications generated using post hoc clustering of species‐level traits. Results: Traditional functional groups explained significant differences in trait expression, particularly amongst traits associated with resource economics, which were consistent across sites and at the biome scale. However, functional groups explained 19% of overall trait variation and poorly represented differences in traits associated with plant size. Post hoc classification of species did not correspond well with traditional functional groups, and explained twice as much variation in species‐level trait expression. Main conclusions: Traditional functional groups only coarsely represent variation in well‐measured traits within tundra plant communities, and better explain resource economic traits than size‐related traits. We recommend caution when using functional group approaches to predict tundra vegetation change, or ecosystem functions relating to plant size, such as albedo or carbon storage. We argue that alternative classifications or direct use of specific plant traits could provide new insights for ecological prediction and modelling.

Published
2019

21. Traditional plant functional groups explain variation in economic but not size-related traits across the tundra biome

Author

Thomas, H. J. D., Myers-Smith, I. H., Bjorkman, A. D., Elmendorf, S. C., Blok, D., Cornelissen, J. H. C., Forbes, B. C., Hollister, R. D., Normand, S., Prevéy, J. S., Rixen, C., Schaepman-Strub, G., Wilmking, M., Wipf, S., Cornwell, W. K., Kattge, J., Goetz, S. J., Guay, K. C., Alatalo, J. M., Anadon-Rosell, A., Angers-Blondin, S., Berner, L. T., Björk, R. G., Buchwal, A., Buras, A., Carbognani, M., Christie, K., Siegwart Collier, L., Cooper, E. J., Eskelinen, A., Frei, E. R., Grau, O., Grogan, P., Hallinger, M., Heijmans, M. M. P. D., Hermanutz, L., Hudson, J. M. G., Hülber, K., Iturrate-Garcia, M., Iversen, C. M., Jaroszynska, F., Johnstone, J. F., Kaarlejärvi, E., Kulonen, A., Lamarque, L. J., Lévesque, E., Little, C. J., Michelsen, A., Milbau, A., Nabe-Nielsen, J., Nielsen, S. S., Ninot, J. M., Oberbauer, S. F., Olofsson, J., Onipchenko, V. G., Petraglia, A., Rumpf, S. B., Semenchuk, P. R., Soudzilovskaia, N. A., Spasojevic, M. J., Speed, J. D. M., Tape, K. D., te Beest, M., Tomaselli, M., Trant, A., Treier, U. A., Venn, S., Vowles, T., Weijers, S., Zamin, T., Atkin, O. K., Bahn, M., Blonder, B., Campetella, G., Cerabolini, B. E. L., Chapin III, F. S., Dainese, M., de Vries, F. T., Díaz, S., Green, W., Jackson, R. B., Manning, P., Niinemets, Ü., Ozinga, W. A., Peñuelas, J., Reich, P. B., Schamp, B., Sheremetev, S., van Bodegom, P. M., Spatial Ecology and Global Change, and Environmental Sciences

Subjects
vegetation change, plant traits, ecosystem function, food and beverages, tundra biome, community composition, plant functional types, plant functional groups, cluster analysis
Abstract

Aim Plant functional groups are widely used in community ecology and earth system modelling to describe trait variation within and across plant communities. However, this approach rests on the assumption that functional groups explain a large proportion of trait variation among species. We test whether four commonly used plant functional groups represent variation in six ecologically important plant traits. Location Tundra biome. Time period Data collected between 1964 and 2016. Major taxa studied 295 tundra vascular plant species. Methods We compiled a database of six plant traits (plant height, leaf area, specific leaf area, leaf dry matter content, leaf nitrogen, seed mass) for tundra species. We examined the variation in species-level trait expression explained by four traditional functional groups (evergreen shrubs, deciduous shrubs, graminoids, forbs), and whether variation explained was dependent upon the traits included in analysis. We further compared the explanatory power and species composition of functional groups to alternative classifications generated using post hoc clustering of species-level traits. Results Traditional functional groups explained significant differences in trait expression, particularly amongst traits associated with resource economics, which were consistent across sites and at the biome scale. However, functional groups explained 19% of overall trait variation and poorly represented differences in traits associated with plant size. Post hoc classification of species did not correspond well with traditional functional groups, and explained twice as much variation in species-level trait expression. Main conclusions Traditional functional groups only coarsely represent variation in well-measured traits within tundra plant communities, and better explain resource economic traits than size-related traits. We recommend caution when using functional group approaches to predict tundra vegetation change, or ecosystem functions relating to plant size, such as albedo or carbon storage. We argue that alternative classifications or direct use of specific plant traits could provide new insights for ecological prediction and modelling.

Published
2019

23. Traditional plant functional groups explain variation in economic but not size-related traits across the tundra biome

Author

Spatial Ecology and Global Change, Environmental Sciences, Thomas, H. J. D., Myers-Smith, I. H., Bjorkman, A. D., Elmendorf, S. C., Blok, D., Cornelissen, J. H. C., Forbes, B. C., Hollister, R. D., Normand, S., Prevéy, J. S., Rixen, C., Schaepman-Strub, G., Wilmking, M., Wipf, S., Cornwell, W. K., Kattge, J., Goetz, S. J., Guay, K. C., Alatalo, J. M., Anadon-Rosell, A., Angers-Blondin, S., Berner, L. T., Björk, R. G., Buchwal, A., Buras, A., Carbognani, M., Christie, K., Siegwart Collier, L., Cooper, E. J., Eskelinen, A., Frei, E. R., Grau, O., Grogan, P., Hallinger, M., Heijmans, M. M. P. D., Hermanutz, L., Hudson, J. M. G., Hülber, K., Iturrate-Garcia, M., Iversen, C. M., Jaroszynska, F., Johnstone, J. F., Kaarlejärvi, E., Kulonen, A., Lamarque, L. J., Lévesque, E., Little, C. J., Michelsen, A., Milbau, A., Nabe-Nielsen, J., Nielsen, S. S., Ninot, J. M., Oberbauer, S. F., Olofsson, J., Onipchenko, V. G., Petraglia, A., Rumpf, S. B., Semenchuk, P. R., Soudzilovskaia, N. A., Spasojevic, M. J., Speed, J. D. M., Tape, K. D., te Beest, M., Tomaselli, M., Trant, A., Treier, U. A., Venn, S., Vowles, T., Weijers, S., Zamin, T., Atkin, O. K., Bahn, M., Blonder, B., Campetella, G., Cerabolini, B. E. L., Chapin III, F. S., Dainese, M., de Vries, F. T., Díaz, S., Green, W., Jackson, R. B., Manning, P., Niinemets, Ü., Ozinga, W. A., Peñuelas, J., Reich, P. B., Schamp, B., Sheremetev, S., van Bodegom, P. M., Spatial Ecology and Global Change, Environmental Sciences, Thomas, H. J. D., Myers-Smith, I. H., Bjorkman, A. D., Elmendorf, S. C., Blok, D., Cornelissen, J. H. C., Forbes, B. C., Hollister, R. D., Normand, S., Prevéy, J. S., Rixen, C., Schaepman-Strub, G., Wilmking, M., Wipf, S., Cornwell, W. K., Kattge, J., Goetz, S. J., Guay, K. C., Alatalo, J. M., Anadon-Rosell, A., Angers-Blondin, S., Berner, L. T., Björk, R. G., Buchwal, A., Buras, A., Carbognani, M., Christie, K., Siegwart Collier, L., Cooper, E. J., Eskelinen, A., Frei, E. R., Grau, O., Grogan, P., Hallinger, M., Heijmans, M. M. P. D., Hermanutz, L., Hudson, J. M. G., Hülber, K., Iturrate-Garcia, M., Iversen, C. M., Jaroszynska, F., Johnstone, J. F., Kaarlejärvi, E., Kulonen, A., Lamarque, L. J., Lévesque, E., Little, C. J., Michelsen, A., Milbau, A., Nabe-Nielsen, J., Nielsen, S. S., Ninot, J. M., Oberbauer, S. F., Olofsson, J., Onipchenko, V. G., Petraglia, A., Rumpf, S. B., Semenchuk, P. R., Soudzilovskaia, N. A., Spasojevic, M. J., Speed, J. D. M., Tape, K. D., te Beest, M., Tomaselli, M., Trant, A., Treier, U. A., Venn, S., Vowles, T., Weijers, S., Zamin, T., Atkin, O. K., Bahn, M., Blonder, B., Campetella, G., Cerabolini, B. E. L., Chapin III, F. S., Dainese, M., de Vries, F. T., Díaz, S., Green, W., Jackson, R. B., Manning, P., Niinemets, Ü., Ozinga, W. A., Peñuelas, J., Reich, P. B., Schamp, B., Sheremetev, S., and van Bodegom, P. M.

Published
2019

24. Ultrasonographical examination of bovine claws through the sole horn on weight-bearing claws

Author

Bach, K., Nielsen, S. S., Danscher, A. M., Capion, N., Bach, K., Nielsen, S. S., Danscher, A. M., and Capion, N.

Abstract

Claw horn disruptions in the bovine claw are believed to be a consequence of pressure on the sole corium from the third phalanx, which may be caused by a weakening of the suspensory apparatus in the claw. We aimed to develop an ultrasonographic method that would make it possible to measure the thickness of the soft tissue between the third phalanx and the sole horn on a weight-bearing claw. A device was developed to record the sole horn and soft tissue thickness indirectly through a polyethylene plate, and 52 feet from slaughtered cows were examined using ultrasonography, both directly and indirectly. Soft tissue and sole horn thickness measurements in the apex and the plantar part of the sole were compared with anatomical measurements of transected claws. To assess the method on weight-bearing versus non-weight-bearing claws, we examined the hind claws of 10 live cattle without transection. We found a weak correlation between the soft tissue thickness measured by ultrasound and anatomical measurements. A strong correlation was observed between the direct ultrasound approach and the developed indirect method. There was a considerable difference between weight-bearing and non-weight-bearing claws, signifying a weak or nonexistent correlation. However, this part of the study was only done on 10 live cows and the results should be interpreted with caution. We concluded that it would be possible to measure the soft tissue using an indirect ultrasound approach on a weight-bearing-claw standing on a polyethylene plate. The major difference between the results of weight-bearing versus non-weight-bearing claws suggests that future studies of the suspensory apparatus could focus on weight-bearing claws.

Published
2019

25. Composite or aseptic quarter milk samples:Sensitivity and specificity of PCR and bacterial culture of Staphylococcus aureus based on Bayesian latent class evaluation

Author

Toft, N., Halasa, T., Nielsen, S. S., Hechinger, S., Zervens, L. M., Schwarz, D., Kirkeby, C., Toft, N., Halasa, T., Nielsen, S. S., Hechinger, S., Zervens, L. M., Schwarz, D., and Kirkeby, C.

Abstract

Bacterial culture (BC) and quantitative polymerase chain reaction (qPCR) are widely used as diagnostic tests for pathogens causing intra-mammary infections (IMI) and it is therefore important to evaluate their performance to optimize pathogen detection. However, with no reference standard, their sensitivity (Se) and specificity (Sp) are unknown. Furthermore, the Se and Sp can differ between quarter samples and composite samples, both of which can be used to test for IMI. Latent class analysis (LCA) offers a method for estimating the Se and Sp of two tests on the same population, but to our knowledge this has not yet been applied to qPCR and BC for the detection of Staph. aureus in both composite and aseptically collected quarter milk samples. This allows for a performance evaluation of not only the two diagnostic methods, but also the two different samples –both cow and quarter level. In this study, we used Bayesian LCA on a dataset from one sampling day at a Danish dairy herd to estimate the Se and Sp for detecting Staph. aureus at cow and quarter level. We used Ct cut-offs of 32 and 37 cycles for the qPCR. When using a cut-off of 37 cycles, the estimated Se and Sp for BC were 62.2% and 90.5% at cow level, and 90.7% and 93.5% at quarter level, respectively. Similarly, the estimated Se and Sp for qPCR at cow level were 82.7% and 84.1%, respectively, and 80.0% and 96.8% at quarter level. Sp was therefore higher for both BC and qPCR at quarter level. Se was also highest for BC at quarter level, but the opposite was true for qPCR. The same pattern was found using a Ct cut-off at 32 cycles, but with different estimates. The results show that qPCR with a Ct cut-off at 37 had a higher Se than BC for composite DHI samples and it is therefore more suitable as a routine screening test for Staph. aureus. However, BC on quarter samples gave the highest Se and Sp and should therefore be used for confirmatory testing.

Published
2019

26. Prevalence of abomasal lesions in Danish Holstein cows at the time of slaughter

Author

Munch, S. L., Nielsen, S. S., Krogh, M. A., Capion, N., Munch, S. L., Nielsen, S. S., Krogh, M. A., and Capion, N.

Abstract

Abomasal lesions in cattle are challenging to diagnose because the clinical signs are often subtle and nonspecific. An increasing number of studies suggests that abomasal lesions are commonly found in cattle of all ages, but the number of recent prevalence studies in dairy cows is limited. The main objective of this study was to estimate the prevalence of abomasal lesions in a population of Danish Holstein dairy cattle in Denmark. An abattoir survey of 1,327 dairy cows apparently suitable for slaughter was performed in 2016 and 2017. Abomasal lesions are usually classified using a standardized protocol with the following types: abomasal ulcer type I: erosions and nonperforating ulcers; type II: ulcers with arterial bleeding; type III: perforating ulcer with localized peritonitis; and type IV: perforating ulcer with diffuse peritonitis. A further subdivision of the nonperforating abomasal ulcers type I were classified as subtype Ia: erosions; subtype Ib: small ulcers with localized hemorrhage; subtype Ic: ulcers with a crater-like appearance; and subtype Id: retention of the mucosa due to tissue loss with either radial wrinkles converging at a central point or perforations of the spiral folds. Type I abomasal lesions were found in 84% of the examined cows. No ulcers with arterial bleeding (type II) or perforating ulcers with diffuse peritonitis (type IV) were found, but one perforating abomasal ulcer (type III) was observed. The total number of lesions found was 7,418 and when the lesion subtypes were evaluated individually the majority of subtypes Ia and Ic were found in the pyloric area (85 and 94%, respectively), whereas lesion subtypes Ib and Id dominated the fundus/corpus area (71 and 67%, respectively). When considering lesion subtypes according to parity, there was a high prevalence of subtype Ib across the 3 groups of parity (51, 58, and 55% for parity 1, 2, and ≥3, respectively). The prevalence of lesion subtype Id seemed to increase with increasing parit

Published
2019

30. Cost-effectiveness of remote ischaemic conditioning as an adjunct to primary percutaneous coronary intervention in patients with ST-elevation myocardial infarction

Author

Sloth, Astrid D, Schmidt, Michael R, Munk, Kim, Schmidt, Morten, Pedersen, Lars, Sørensen, Henrik Toft, Enemark, Ulrika, Parner, Erik T, Bøtker, Hans Erik, Rehling, Michael, and Nielsen, S. S.

Subjects
medicine.medical_specialty, Conditioning (Psychology), business.industry, Cost effectiveness, Medical record, medicine.medical_treatment, Ischemia, Percutaneous coronary intervention, General Medicine, Cost-effectiveness analysis, 030204 cardiovascular system & hematology, Critical Care and Intensive Care Medicine, medicine.disease, 03 medical and health sciences, 0302 clinical medicine, Internal medicine, Cuff, Cardiology, Medicine, 030212 general & internal medicine, Myocardial infarction, Cardiology and Cardiovascular Medicine, business
Abstract

AIMS: Remote ischaemic conditioning seems to improve long-term clinical outcomes in patients undergoing primary percutaneous coronary intervention. Remote ischaemic conditioning can be applied with cycles of alternating inflation and deflation of a blood-pressure cuff. We evaluated the cost-effectiveness of remote ischaemic conditioning as an adjunct to primary percutaneous coronary intervention in patients with ST-elevation myocardial infarction from the perspective of the Danish healthcare system.METHODS AND RESULTS: Between February 2007 and November 2008, 251 patients with ST-elevation myocardial infarction were randomly assigned to remote ischaemic conditioning as an adjunct to primary percutaneous coronary intervention (n=126) or to primary percutaneous coronary intervention alone (n=125). During a 4-year follow-up period, we used data from Danish medical registries and medical records to estimate within-trial cardiovascular medical care costs and major adverse cardiac and cerebrovascular event-free survival. After 4 years of follow-up, mean cumulative cardiovascular medical care costs were €2763 (95% confidence interval 207-5318, P=0.034) lower in the remote ischaemic conditioning group than in the control group (€12,065 vs. €14,828), while mean major adverse cardiac and cerebrovascular event-free survival time was 0.30 years (95% confidence interval 0.03-0.57, P=0.032) higher in the remote ischaemic conditioning group than in the control group (3.51 vs. 3.21 years). In the cost-effectiveness plane, remote ischaemic conditioning therapy was economically dominant (less costly and more effective) in 97.26% of 10,000 bootstrap replications.CONCLUSION: Remote ischaemic conditioning as an adjunct to primary percutaneous coronary intervention appears to be a cost-effective treatment strategy in patients with ST-elevation myocardial infarction.

Published
2016
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34. Calcium bioavailability of vegetarian diets in rats: potential application in a bioregenerative life-support system

Author

Nickel, K. P, Nielsen, S. S, Smart, D. J, Mitchell, C. A, and Belury, M. A

Subjects
Man/System Technology And Life Support
Abstract

Calcium bioavailability of vegetarian diets containing various proportions of candidate crops for a controlled ecological life-support system (CELSS) was determined by femur 45Ca uptake. Three vegetarian diets and a control diet were labeled extrinsically with 45Ca and fed to 5-wk old male rats. A fifth group of rats fed an unlabeled control diet received an intraperitoneal (IP) injection of 45Ca. There was no significant difference in mean calcium absorption of vegetarian diets (90.80 +/- 5.23%) and control diet (87.85 +/- 5.25%) when calculated as the percent of an IP dose. The amounts of phytate, oxalate, and dietary fiber in the diets did not affect calcium absorption.

Published
1997

35. Environmental modification of yield and nutrient composition of 'Waldmann's Green' leaf lettuce

Author

Mitchell, C. A, Chun, C, Brandt, W. E, and Nielsen, S. S

Subjects
Life Sciences (General)
Abstract

Leaf number, dry weight, and nutrient composition of Lactuca sativa L. cv. Waldmann's Green leaves were compared following 9 days of treatment in a controlled environment room under various combinations of photosynthetic photon flux (PPF:350 vs 800 micromoles m-2 s-1), atmospheric CO2 level (ambient vs 1500 micromoles mol-1), and single-strength (1X:15 mM) vs double-strength (2X:30 mM) nitrogen (N) as NO3- alone or as NH4(+) + NO3- (1:5 molar ratio). CO2 enrichment greatly enhanced leaf number under all PPF and N conditions, but increased leaf dry weight only at high PPF. Conditions favoring high photosynthesis enhanced leaf starch content 3-fold, and protein content increased as much as 64% with 2X NH4(+)+NO3-. Free sugar content was 6 to 9% of leaf dry weight for all treatment combinations, while fat was 1.5 to 3.5%. Ash content varied from 15 to 20% of leaf dry weight. Modified controlled environments can be used to enhance the nutritional content as well as the yield of crops to be used for life support in space-deployed, self-sustaining human habitats. Leaf lettuce is a useful model crop for demonstrating the potential of nutritional value added by environmental manipulation.

Published
1997

36. Tundra Trait Team:a database of plant traits spanning the tundra biome

Author

Bjorkman, A. D. (Anne D.), Myers-Smith, I. H. (Isla H.), Elmendorf, S. C. (Sarah C.), Normand, S. (Signe), Thomas, H. J. (Haydn J. D.), Alatalo, J. M. (Juha M.), Alexander, H. (Heather), Anadon-Rosell, A. (Alba), Angers-Blondin, S. (Sandra), Bai, Y. (Yang), Baruah, G. (Gaurav), te Beest, M. (Mariska), Berner, L. (Logan), Bjork, R. G. (Robert G.), Blok, D. (Daan), Bruelheide, H. (Helge), Buchwal, A. (Agata), Buras, A. (Allan), Carbognani, M. (Michele), Christie, K. (Katherine), Collier, L. S. (Laura S.), Cooper, E. J. (Elisabeth J.), Cornelissen, J. H. (J. Hans C.), Dickinson, K. J. (Katharine J. M.), Dullinger, S. (Stefan), Elberling, B. (Bo), Eskelinen, A. (Anu), Forbes, B. C. (Bruce C.), Frei, E. R. (Esther R.), Iturrate-Garcia, M. (Maitane), Good, M. K. (Megan K.), Grau, O. (Oriol), Green, P. (Peter), Greve, M. (Michelle), Grogan, P. (Paul), Haider, S. (Sylvia), Hajek, T. (Tomas), Hallinger, M. (Martin), Happonen, K. (Konsta), Harper, K. A. (Karen A.), Heijmans, M. M. (Monique M. P. D.), Henry, G. H. (Gregory H. R.), Hermanutz, L. (Luise), Hewitt, R. E. (Rebecca E.), Hollister, R. D. (Robert D.), Hudson, J. (James), Huelber, K. (Karl), Iversen, C. M. (Colleen M.), Jaroszynska, F. (Francesca), Jimenez-Alfaro, B. (Borja), Johnstone, J. (Jill), Jorgensen, R. H. (Rasmus Halfdan), Kaarlejarvi, E. (Elina), Klady, R. (Rebecca), Klimesova, J. (Jitka), Korsten, A. (Annika), Kuleza, S. (Sara), Kulonen, A. (Aino), Lamarque, L. J. (Laurent J.), Lantz, T. (Trevor), Lavalle, A. (Amanda), Lembrechts, J. J. (Jonas J.), Levesque, E. (Esther), Little, C. J. (Chelsea J.), Luoto, M. (Miska), Macek, P. (Petr), Mack, M. C. (Michelle C.), Mathakutha, R. (Rabia), Michelsen, A. (Anders), Milbau, A. (Ann), Molau, U. (Ulf), Morgan, J. W. (John W.), Morsdorf, M. A. (Martin Alfons), Nabe-Nielsen, J. (Jacob), Nielsen, S. S. (Sigrid Scholer), Ninot, J. M. (Josep M.), Oberbauer, S. F. (Steven F.), Olofsson, J. (Johan), Onipchenko, V. G. (Vladimir G.), Petraglia, A. (Alessandro), Pickering, C. (Catherine), Prevey, J. S. (Janet S.), Rixen, C. (Christian), Rumpf, S. B. (Sabine B.), Schaepman-Strub, G. (Gabriela), Semenchuk, P. (Philipp), Shetti, R. (Rohan), Soudzilovskaia, N. A. (Nadejda A.), Spasojevic, M. J. (Marko J.), Speed, J. D. (James David Mervyn), Street, L. E. (Lorna E.), Suding, K. (Katharine), Tape, K. D. (Ken D.), Tomaselli, M. (Marcello), Trant, A. (Andrew), Treier, U. A. (Urs A.), Tremblay, J.-P. (Jean-Pierre), Tremblay, M. (Maxime), Venn, S. (Susanna), Virkkala, A.-M. (Anna-Maria), Vowles, T. (Tage), Weijers, S. (Stef), Wilmking, M. (Martin), Wipf, S. (Sonja), Zamin, T. (Tara), Bjorkman, A. D. (Anne D.), Myers-Smith, I. H. (Isla H.), Elmendorf, S. C. (Sarah C.), Normand, S. (Signe), Thomas, H. J. (Haydn J. D.), Alatalo, J. M. (Juha M.), Alexander, H. (Heather), Anadon-Rosell, A. (Alba), Angers-Blondin, S. (Sandra), Bai, Y. (Yang), Baruah, G. (Gaurav), te Beest, M. (Mariska), Berner, L. (Logan), Bjork, R. G. (Robert G.), Blok, D. (Daan), Bruelheide, H. (Helge), Buchwal, A. (Agata), Buras, A. (Allan), Carbognani, M. (Michele), Christie, K. (Katherine), Collier, L. S. (Laura S.), Cooper, E. J. (Elisabeth J.), Cornelissen, J. H. (J. Hans C.), Dickinson, K. J. (Katharine J. M.), Dullinger, S. (Stefan), Elberling, B. (Bo), Eskelinen, A. (Anu), Forbes, B. C. (Bruce C.), Frei, E. R. (Esther R.), Iturrate-Garcia, M. (Maitane), Good, M. K. (Megan K.), Grau, O. (Oriol), Green, P. (Peter), Greve, M. (Michelle), Grogan, P. (Paul), Haider, S. (Sylvia), Hajek, T. (Tomas), Hallinger, M. (Martin), Happonen, K. (Konsta), Harper, K. A. (Karen A.), Heijmans, M. M. (Monique M. P. D.), Henry, G. H. (Gregory H. R.), Hermanutz, L. (Luise), Hewitt, R. E. (Rebecca E.), Hollister, R. D. (Robert D.), Hudson, J. (James), Huelber, K. (Karl), Iversen, C. M. (Colleen M.), Jaroszynska, F. (Francesca), Jimenez-Alfaro, B. (Borja), Johnstone, J. (Jill), Jorgensen, R. H. (Rasmus Halfdan), Kaarlejarvi, E. (Elina), Klady, R. (Rebecca), Klimesova, J. (Jitka), Korsten, A. (Annika), Kuleza, S. (Sara), Kulonen, A. (Aino), Lamarque, L. J. (Laurent J.), Lantz, T. (Trevor), Lavalle, A. (Amanda), Lembrechts, J. J. (Jonas J.), Levesque, E. (Esther), Little, C. J. (Chelsea J.), Luoto, M. (Miska), Macek, P. (Petr), Mack, M. C. (Michelle C.), Mathakutha, R. (Rabia), Michelsen, A. (Anders), Milbau, A. (Ann), Molau, U. (Ulf), Morgan, J. W. (John W.), Morsdorf, M. A. (Martin Alfons), Nabe-Nielsen, J. (Jacob), Nielsen, S. S. (Sigrid Scholer), Ninot, J. M. (Josep M.), Oberbauer, S. F. (Steven F.), Olofsson, J. (Johan), Onipchenko, V. G. (Vladimir G.), Petraglia, A. (Alessandro), Pickering, C. (Catherine), Prevey, J. S. (Janet S.), Rixen, C. (Christian), Rumpf, S. B. (Sabine B.), Schaepman-Strub, G. (Gabriela), Semenchuk, P. (Philipp), Shetti, R. (Rohan), Soudzilovskaia, N. A. (Nadejda A.), Spasojevic, M. J. (Marko J.), Speed, J. D. (James David Mervyn), Street, L. E. (Lorna E.), Suding, K. (Katharine), Tape, K. D. (Ken D.), Tomaselli, M. (Marcello), Trant, A. (Andrew), Treier, U. A. (Urs A.), Tremblay, J.-P. (Jean-Pierre), Tremblay, M. (Maxime), Venn, S. (Susanna), Virkkala, A.-M. (Anna-Maria), Vowles, T. (Tage), Weijers, S. (Stef), Wilmking, M. (Martin), Wipf, S. (Sonja), and Zamin, T. (Tara)

Abstract

Motivation: The Tundra Trait Team (TTT) database includes field‐based measurements of key traits related to plant form and function at multiple sites across the tundra biome. This dataset can be used to address theoretical questions about plant strategy and trade‐offs, trait–environment relationships and environmental filtering, and trait variation across spatial scales, to validate satellite data, and to inform Earth system model parameters. Main types of variable contained: The database contains 91,970 measurements of 18 plant traits. The most frequently measured traits (> 1,000 observations each) include plant height, leaf area, specific leaf area, leaf fresh and dry mass, leaf dry matter content, leaf nitrogen, carbon and phosphorus content, leaf C:N and N:P, seed mass, and stem specific density. Spatial location and grain: Measurements were collected in tundra habitats in both the Northern and Southern Hemispheres, including Arctic sites in Alaska, Canada, Greenland, Fennoscandia and Siberia, alpine sites in the European Alps, Colorado Rockies, Caucasus, Ural Mountains, Pyrenees, Australian Alps, and Central Otago Mountains (New Zealand), and sub‐Antarctic Marion Island. More than 99% of observations are georeferenced. Time period and grain: All data were collected between 1964 and 2018. A small number of sites have repeated trait measurements at two or more time periods. Major taxa and level of measurement: Trait measurements were made on 978 terrestrial vascular plant species growing in tundra habitats. Most observations are on individuals (86%), while the remainder represent plot or site means or maximums per species. Software format: csv file and GitHub repository with data cleaning scripts in R; contribution to TRY plant trait database (www.try-db.org) to be included in the next version release.

Published
2018

37. Knowledge gaps that hamper prevention and control of Mycobacterium avium subspecies paratuberculosis infection

Author

Barkema, H W, Orsel, K, Nielsen, S S, Koets, A P, Rutten, V P M G, Bannantine, J P, Keefe, G P, Kelton, D F, Wells, S J, Whittington, R J, Mackintosh, C G, Manning, E J, Weber, M F, Heuer, C, Forde, T L, Ritter, C, Roche, S, Corbett, C S, Wolf, R, Griebel, P J, Kastelic, J P, De Buck, J, Barkema, H W, Orsel, K, Nielsen, S S, Koets, A P, Rutten, V P M G, Bannantine, J P, Keefe, G P, Kelton, D F, Wells, S J, Whittington, R J, Mackintosh, C G, Manning, E J, Weber, M F, Heuer, C, Forde, T L, Ritter, C, Roche, S, Corbett, C S, Wolf, R, Griebel, P J, Kastelic, J P, and De Buck, J

Abstract

In the last decades, many regional and country-wide control programmes for Johne's disease (JD) were developed due to associated economic losses, or because of a possible association with Crohn's disease. These control programmes were often not successful, partly because management protocols were not followed, including the introduction of infected replacement cattle, because tests to identify infected animals were unreliable, and uptake by farmers was not high enough because of a perceived low return on investment. In the absence of a cure or effective commercial vaccines, control of JD is currently primarily based on herd management strategies to avoid infection of cattle and restrict within-farm and farm-to-farm transmission. Although JD control programmes have been implemented in most developed countries, lessons learned from JD prevention and control programmes are underreported. Also, JD control programmes are typically evaluated in a limited number of herds and the duration of the study is less than 5 year, making it difficult to adequately assess the efficacy of control programmes. In this manuscript, we identify the most important gaps in knowledge hampering JD prevention and control programmes, including vaccination and diagnostics. Secondly, we discuss directions that research should take to address those knowledge gaps.

Published
2018

38. Tundra Trait Team: A database of plant traits spanning the tundra biome

Author

Bjorkman, A. D., Myers-Smith, I. H., Elmendorf, S. C., Normand, S., Thomas, H. J. D., Alatalo, J. M., Alexander, H., Anadon-Rosell, A., Angers-Blondin, S., Bai, Y., Baruah, G., te Beest, M., Berner, L., Björk, R. G., Blok, D., Bruelheide, H., Buchwal, A., Buras, A., Carbognani, M., Christie, K., Collier, L. S., Cooper, E. J., Cornelissen, J. H. C., Dickinson, K. J. M., Dullinger, S., Elberling, B., Eskelinen, A., Forbes, B. C., Frei, E. R., Iturrate-Garcia, M., Good, M. K., Grau, O., Green, P., Greve, M., Grogan, P., Haider, S., Hájek, T., Hallinger, M., Happonen, K., Harper, K. A., Heijmans, M. M. P. D., Henry, G. H. R., Hermanutz, L., Hewitt, R. E., Hollister, R. D., Hudson, J., Hülber, K., Iversen, C. M., Jaroszynska, F., Jiménez-Alfaro, B., Johnstone, J., Jorgensen, R. H., Kaarlejärvi, E., Klady, R., Klimešová, J., Korsten, A., Kuleza, S., Kulonen, A., Lamarque, L. J., Lantz, T., Lavalle, A., Lembrechts, J. J., Lévesque, E., Little, C. J., Luoto, M., Macek, P., Mack, M. C., Mathakutha, R., Michelsen, A., Milbau, A., Molau, U., Morgan, J. W., Mörsdorf, M. A., Nabe-Nielsen, J., Nielsen, S. S., Ninot, J. M., Oberbauer, S. F., Olofsson, J., Onipchenko, V. G., Petraglia, A., Pickering, C., Prevéy, J. S., Rixen, C., Rumpf, S. B., Schaepman-Strub, G., Semenchuk, P., Shetti, R., Soudzilovskaia, N. A., Spasojevic, M. J., Speed, J. D. M., Street, L. E., Suding, K., Tape, K. D., Tomaselli, M., Trant, A., Treier, U. A., Tremblay, J. P., Tremblay, M., Venn, S., Virkkala, A. M., Vowles, T., Weijers, S., Wilmking, M., Wipf, S., Zamin, T., Bjorkman, A. D., Myers-Smith, I. H., Elmendorf, S. C., Normand, S., Thomas, H. J. D., Alatalo, J. M., Alexander, H., Anadon-Rosell, A., Angers-Blondin, S., Bai, Y., Baruah, G., te Beest, M., Berner, L., Björk, R. G., Blok, D., Bruelheide, H., Buchwal, A., Buras, A., Carbognani, M., Christie, K., Collier, L. S., Cooper, E. J., Cornelissen, J. H. C., Dickinson, K. J. M., Dullinger, S., Elberling, B., Eskelinen, A., Forbes, B. C., Frei, E. R., Iturrate-Garcia, M., Good, M. K., Grau, O., Green, P., Greve, M., Grogan, P., Haider, S., Hájek, T., Hallinger, M., Happonen, K., Harper, K. A., Heijmans, M. M. P. D., Henry, G. H. R., Hermanutz, L., Hewitt, R. E., Hollister, R. D., Hudson, J., Hülber, K., Iversen, C. M., Jaroszynska, F., Jiménez-Alfaro, B., Johnstone, J., Jorgensen, R. H., Kaarlejärvi, E., Klady, R., Klimešová, J., Korsten, A., Kuleza, S., Kulonen, A., Lamarque, L. J., Lantz, T., Lavalle, A., Lembrechts, J. J., Lévesque, E., Little, C. J., Luoto, M., Macek, P., Mack, M. C., Mathakutha, R., Michelsen, A., Milbau, A., Molau, U., Morgan, J. W., Mörsdorf, M. A., Nabe-Nielsen, J., Nielsen, S. S., Ninot, J. M., Oberbauer, S. F., Olofsson, J., Onipchenko, V. G., Petraglia, A., Pickering, C., Prevéy, J. S., Rixen, C., Rumpf, S. B., Schaepman-Strub, G., Semenchuk, P., Shetti, R., Soudzilovskaia, N. A., Spasojevic, M. J., Speed, J. D. M., Street, L. E., Suding, K., Tape, K. D., Tomaselli, M., Trant, A., Treier, U. A., Tremblay, J. P., Tremblay, M., Venn, S., Virkkala, A. M., Vowles, T., Weijers, S., Wilmking, M., Wipf, S., and Zamin, T.

Abstract

Motivation: The Tundra Trait Team (TTT) database includes field-based measurements of key traits related to plant form and function at multiple sites across the tundra biome. This dataset can be used to address theoretical questions about plant strategy and trade-offs, trait–environment relationships and environmental filtering, and trait variation across spatial scales, to validate satellite data, and to inform Earth system model parameters. Main types of variable contained: The database contains 91,970 measurements of 18 plant traits. The most frequently measured traits (> 1,000 observations each) include plant height, leaf area, specific leaf area, leaf fresh and dry mass, leaf dry matter content, leaf nitrogen, carbon and phosphorus content, leaf C:N and N:P, seed mass, and stem specific density. Spatial location and grain: Measurements were collected in tundra habitats in both the Northern and Southern Hemispheres, including Arctic sites in Alaska, Canada, Greenland, Fennoscandia and Siberia, alpine sites in the European Alps, Colorado Rockies, Caucasus, Ural Mountains, Pyrenees, Australian Alps, and Central Otago Mountains (New Zealand), and sub-Antarctic Marion Island. More than 99% of observations are georeferenced. Time period and grain: All data were collected between 1964 and 2018. A small number of sites have repeated trait measurements at two or more time periods. Major taxa and level of measurement: Trait measurements were made on 978 terrestrial vascular plant species growing in tundra habitats. Most observations are on individuals (86%), while the remainder represent plot or site means or maximums per species. Software format: csv file and GitHub repository with data cleaning scripts in R; contribution to TRY plant trait database (www.try-db.org) to be included in the next version release.

Published
2018

39. Varying plant density and harvest time to optimize cowpea leaf yield and nutrient content

Author

Ohler, T. A, Nielsen, S. S, and Mitchell, C. A

Subjects
Man/System Technology And Life Support
Abstract

Plant density and harvest time were manipulated to optimize vegetative (foliar) productivity of cowpea [Vigna unguiculata (L.) Walp.] canopies for future dietary use in controlled ecological life-support systems as vegetables or salad greens. Productivity was measured as total shoot and edible dry weights (DW), edible yield rate [(EYR) grams DW per square meter per day], shoot harvest index [(SHI) grams DW per edible gram DW total shoot], and yield-efficiency rate [(YER) grams DW edible per square meter per day per grams DW nonedible]. Cowpeas were grown in a greenhouse for leaf-only harvest at 14, 28, 42, 56, 84, or 99 plants/m2 and were harvested 20, 30, 40, or 50 days after planting (DAP). Shoot and edible dry weights increased as plant density and time to harvest increased. A maximum of 1189 g shoot DW/m2 and 594 g edible DW/m2 were achieved at an estimated plant density of 85 plants/m2 and harvest 50 DAP. EYR also increased as plant density and time to harvest increased. An EYR of 11 g m-2 day-1 was predicted to occur at 86 plants/m2 and harvest 50 DAP. SHI and YER were not affected by plant density. However, the highest values of SHI (64%) and YER (1.3 g m-2 day-1 g-1) were attained when cowpeas were harvested 20 DAP. The average fat and ash contents [dry-weight basis (dwb)] of harvested leaves remained constant regardless of harvest time. Average protein content increased from 25% DW at 30 DAP to 45% DW at 50 DAP. Carbohydrate content declined from 50% DW at 30 DAP to 45% DW at 50 DAP. Total dietary fiber content (dwb) of the leaves increased from 19% to 26% as time to harvest increased from 20 to 50 days.

Published
1996

40. Evaluation of Cyanothece sp. ATCC 51142 as a candidate for inclusion in a CELSS

Author

Schneegurt, M. A, Arieli, B, Nielsen, S. S, Trumbo, P. R, Sherman, L. A, and Mitchell, C. A

Subjects
Man/System Technology And Life Support
Abstract

Controlled ecological life support systems (CELSS) have been proposed to make long-duration manned space flights more cost-effective. Higher plants will presumably provide food and a breathable atmosphere for the crew. It has been suggested that imbalances between the CO2/O2 gas exchange ratios of the heterotrophic and autotrophic components of the system will inevitably lead to an unstable system, and the loss of O2 from the atmosphere. Ratio imbalances may be corrected by including a second autotroph with an appropriate CO2/O2 gas exchange ratio. Cyanothece sp. ATCC 51142 is a large unicellular N2-fixing cyanobacterium, exhibiting high growth rates under diverse physiological conditions. A rat-feeding study showed the biomass to be edible. Furthermore, it may have a CO2/O2 gas exchange ratio that theoretically can compensate for ratio imbalances. It is suggested that Cyanothece spp. could fulfill several roles in a CELSS: supplementing atmosphere recycling, generating fixed N from the air, providing a balanced protein supplement, and protecting a CELSS in case of catastrophic crop failure.

Published
1996

41. Excess nutrients in hydroponic solutions alter nutrient content of rice, wheat, and potato

Author

McKeehen, J. D, Mitchell, C. A, Wheeler, R. M, Bugbee, B, and Nielsen, S. S

Subjects
Man/System Technology And Life Support
Abstract

Environment has significant effects on the nutrient content of field-grown crop plants. Little is known, however, about compositional changes caused by controlled environments in which plants receive only artificial radiation and soilless, hydroponic culture. This knowledge is essential for developing a safe, nutritious diet in a Controlled Ecological Life-Support System (CELSS). Three crops that are candidates for inclusion in a CELSS (rice, wheat, and white potato) were grown both in the field and in controlled environments where the hydroponic nutrient solution, photosynthetic photon flux (PPF), and CO2 level were manipulated to achieve rapid growth rates. Plants were harvested at maturity, separated into discrete parts, and dried prior to analysis. Plant materials were analyzed for proximate composition (protein, fat, ash, and carbohydrate), total nitrogen (N), nitrate, minerals, and amino-acid composition. The effect of environment on nutrient content varied by crop and plant part. Total N and nonprotein N (NPN) contents of plant biomass generally increased under controlled-environment conditions compared to field conditions, especially for leafy plant parts and roots. Nitrate levels were increased in hydroponically-grown vegetative tissues, but nitrate was excluded from grains and tubers. Mineral content changes in plant tissue included increased phosphorus and decreased levels of certain micronutrient elements under controlled-environment conditions. These findings suggest that cultivar selection, genetic manipulation, and environmental control could be important to obtain highly nutritious biomass in a CELSS.

Published
1996

42. Effect of CO2 levels on nutrient content of lettuce and radish

Author

McKeehen, J. D, Smart, D. J, Mackowiak, C. L, Wheeler, R. M, Nielsen, S. S, and Mitchell, C. A

Subjects
Man/System Technology And Life Support
Abstract

Atmospheric carbon-dioxide enrichment is known to affect the yield of lettuce and radish grown in controlled environments, but little is known about CO2 enrichment effects on the chemical composition of lettuce and radish. These crops are useful model systems for a Controlled Ecological Life-Support System (CELSS), largely because of their relatively short production cycles. Lettuce (Lactuca sativa L.) cultivar 'Waldmann's Green' and radish (Raphanus sativus L.) cultivar 'Giant White Globe' were grown both in the field and in controlled environments, where hydroponic nutrient solution, light, and temperature were regulated, and where CO2 levels were controlled at 400, 1000, 5000, or 10,000 ppm. Plants were harvested at maturity, dried, and analyzed for proximate composition (protein, fat, ash, and carbohydrate), total nitrogen (N), nitrate N, free sugars, starch, total dietary fiber, and minerals. Total N, protein N, nonprotein N (NPN), and nitrate N generally increased for radish roots and lettuce leaves when grown under growth chamber conditions compared to field conditions. The nitrate-N level of lettuce leaves, as a percentage of total NPN, decreased with increasing levels of CO2 enrichment. The ash content of radish roots and of radish and lettuce leaves decreased with increasing levels of CO2 enrichment. The levels of certain minerals differed between field- and chamber-grown materials, including changes in the calcium (Ca) and phosphorus (P) contents of radish and lettuce leaves, resulting in reduced Ca/P ratio for chamber-grown materials. The free-sugar contents were similar between the field and chamber-grown lettuce leaves, but total dietary fiber content was much higher in the field-grown plant material. The starch content of growth-chamber lettuce increased with CO2 level.

Published
1996

43. Compositional and toxicological evaluation of the diazotrophic cyanobacterium, Cyanothece sp. strain ATCC 51142

Author

Schneegurt, M. A, Arieli, B, McKeehen, J. D, Stephens, S. D, Nielsen, S. S, Saha, P. R, Trumbo, P. R, Sherman, L. A, and Mitchell, C. A

Subjects
Man/System Technology And Life Support
Abstract

Compositional analyses of Cyanothece sp. strain ATCC 51142 showed high protein (50-60%) and low fat (0.4-1%) content, and the ability to synthesize vitamin B12. The amino acid profile indicated that Cyanothece sp. was a balanced protein source. Fatty acids of the 18:3n-3 type were also present. Mineral analyses indicated that the cellular biomass may be a good source of Fe, Zn and Na. Caloric content was 4.5 to 5.1 kcal g dry weight-1 and the carbon content was approximately 40% on a dry weight basis. Nitrogen content was 8 to 9% on a dry weight basis and total nucleic acids were 1.3% on a dry weight basis. Short-term feeding studies in rats followed by histopathology found no toxicity or dietary incompatibility problems. The level of uric acid and allantoin in urine and tissues was low, suggesting no excess of nucleic acids, as sometimes reported in the past for a cyanobacteria-containing diet. The current work discusses the potential implications of these results for human nutrition applications.

Published
1995
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44. Yield and seed oil content response of dwarf, rapid-cycling Brassica to nitrogen treatments, planting density, and carbon dioxide enrichment

Author

Frick, J, Nielsen, S. S, and Mitchell, C. A

Subjects
Life Sciences (General)
Abstract

Effects of N level (15 to 30 mM), time of N increase (14 to 28 days after planting), and planting density (1163 to 2093 plants/m2) were determined for crop yield responses of dwarf, rapid-cycling brassica (Brassica napus L., CrGC 5-2, Genome: ACaacc). Crops were grown in solid-matrix hydroponic systems and under controlled-environment conditions, including nonsupplemented (ambient) or elevated CO2 concentrations (998 +/- 12 micromoles mol-1). The highest seed yield rate obtained (4.4 g m-2 day-1) occurred with the lowest N level (15 mM) applied at the latest treatment time (day 28). In all trials, CO2 enrichment reduced seed yield rate and harvest index by delaying the onset of flowering and senescence and stimulating vegetative shoot growth. The highest shoot biomass accumulation rate (55.5 g m-2 day-1) occurred with the highest N level (30 mM) applied at the earliest time (day 14). Seed oil content was not significantly affected by CO2 enrichment. Maximum seed oil content (30% to 34%, dry weight basis) was obtained using the lowest N level (15 mM) initiated at the latest treatment time (day 28). In general, an increase in seed oil content was accompanied by a decrease in seed protein. Seed carbohydrate, moisture, and ash contents did not vary significantly in response to experimental treatments. Effects of N level and time of N increase were consistently significant for most crop responses. Planting density was significant only under elevated CO2 conditions.

Published
1994

45. Anion-exchange high-performance liquid chromatography with post-column detection for the analysis of phytic acid and other inositol phosphates

Author

Rounds, M. A, Nielsen, S. S, and Mitchell, C. A

Subjects
Life Sciences (General)
Abstract

The use of gradient anion-exchange HPLC, with a simple post-column detection system, is described for the separation of myo-inositol phosphates, including "phytic acid" (myo-inositol hexaphosphate). Hexa-, penta-, tetra-, tri- and diphosphate members of this homologous series are clearly resolved within 30 min. This method should facilitate analysis and quantitation of "phytic acid" and other inositol phosphates in plant, food, and soil samples.

Published
1993
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46. Traditional plant functional groups explain variation in economic but not size‐related traits across the tundra biome

Author

Thomas, H. J. D., primary, Myers‐Smith, I. H., additional, Bjorkman, A. D., additional, Elmendorf, S. C., additional, Blok, D., additional, Cornelissen, J. H. C., additional, Forbes, B. C., additional, Hollister, R. D., additional, Normand, S., additional, Prevéy, J. S., additional, Rixen, C., additional, Schaepman‐Strub, G., additional, Wilmking, M., additional, Wipf, S., additional, Cornwell, W. K., additional, Kattge, J., additional, Goetz, S. J., additional, Guay, K. C., additional, Alatalo, J. M., additional, Anadon‐Rosell, A., additional, Angers‐Blondin, S., additional, Berner, L. T., additional, Björk, R. G., additional, Buchwal, A., additional, Buras, A., additional, Carbognani, M., additional, Christie, K., additional, Siegwart Collier, L., additional, Cooper, E. J., additional, Eskelinen, A., additional, Frei, E. R., additional, Grau, O., additional, Grogan, P., additional, Hallinger, M., additional, Heijmans, M. M. P. D., additional, Hermanutz, L., additional, Hudson, J. M. G., additional, Hülber, K., additional, Iturrate‐Garcia, M., additional, Iversen, C. M., additional, Jaroszynska, F., additional, Johnstone, J. F., additional, Kaarlejärvi, E., additional, Kulonen, A., additional, Lamarque, L. J., additional, Lévesque, E., additional, Little, C. J., additional, Michelsen, A., additional, Milbau, A., additional, Nabe‐Nielsen, J., additional, Nielsen, S. S., additional, Ninot, J. M., additional, Oberbauer, S. F., additional, Olofsson, J., additional, Onipchenko, V. G., additional, Petraglia, A., additional, Rumpf, S. B., additional, Semenchuk, P. R., additional, Soudzilovskaia, N. A., additional, Spasojevic, M. J., additional, Speed, J. D. M., additional, Tape, K. D., additional, te Beest, M., additional, Tomaselli, M., additional, Trant, A., additional, Treier, U. A., additional, Venn, S., additional, Vowles, T., additional, Weijers, S., additional, Zamin, T., additional, Atkin, O. K., additional, Bahn, M., additional, Blonder, B., additional, Campetella, G., additional, Cerabolini, B. E. L., additional, Chapin III, F. S., additional, Dainese, M., additional, de Vries, F. T., additional, Díaz, S., additional, Green, W., additional, Jackson, R. B., additional, Manning, P., additional, Niinemets, Ü., additional, Ozinga, W. A., additional, Peñuelas, J., additional, Reich, P. B., additional, Schamp, B., additional, Sheremetev, S., additional, and van Bodegom, P. M., additional

Published
2018
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47. Knowledge gaps that hamper prevention and control ofMycobacterium aviumsubspeciesparatuberculosisinfection

Author

Barkema, H. W., primary, Orsel, K., additional, Nielsen, S. S., additional, Koets, A. P., additional, Rutten, V. P. M. G., additional, Bannantine, J. P., additional, Keefe, G. P., additional, Kelton, D. F., additional, Wells, S. J., additional, Whittington, R. J., additional, Mackintosh, C. G., additional, Manning, E. J., additional, Weber, M. F., additional, Heuer, C., additional, Forde, T. L., additional, Ritter, C., additional, Roche, S., additional, Corbett, C. S., additional, Wolf, R., additional, Griebel, P. J., additional, Kastelic, J. P., additional, and De Buck, J., additional

Published
2017
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48. A radiological study on intra- and extra-cranial calcifications in adults with X-linked hypophosphatemia and associations with other mineralizing enthesopathies and childhood medical treatment

Author

Gjørup, H, Kjaer, I, Beck-Nielsen, S S, Poulsen, M R, Haubek, D, Gjørup, H, Kjaer, I, Beck-Nielsen, S S, Poulsen, M R, and Haubek, D

Abstract

OBJECTIVES: 1) The objective of this study was to explore radiological signs of intracranial and nuchal ligament calcifications in adult patients with X-linked hypophosphatemia (XLH) compared with controls and 2) to correlate signs of cranial calcifications in XLH patients with the presence of other extra-cranial enthesopathies, with the severity of skeletal XLH impact and with medical treatment during childhood.SETTING AND SAMPLE POPULATION: Lateral and postero-anterior cephalograms from 36 adult XLH patients and 49 adult controls and X-rays from spine, pelvis, knees and ankles from 31 of the 36 XLH patients.METHODS: Radiological signs of intracranial and nuchal ligament calcifications in XLH patients were compared with controls by Fischer's exact test. In XLH patients, the presence of cranial calcifications was correlated with the presence of other enthesopathies, with the severity of skeletal XLH impact and with medical treatment by Fischer's exact or chi-squared test.RESULTS: Six (17%) XLH patients revealed major signs of intracranial calcifications. Nuchal ligament calcifications were common in XLH patients compared with controls (p = 0.018). Enthesopathy was present at 0-24 sites per XLH patient (median 2). Intracranial calcifications trended to correlate positively with vertebral enthesopathies (p = 0.059). Nuchal calcifications correlated positively with the severity of skeletal XLH impact (p = 0.040). Vertebral enthesopathies correlated negatively with medical treatment (p = 0.008).CONCLUSION: More XLH patients than controls showed nuchal ligament calcifications, and some XLH patients showed intracranial calcifications. Severely affected XLH patients often had nuchal ligament calcifications. Medically treated XLH patients had few vertebral enthesopathies.

Published
2016

50. Knowledge gaps that hamper prevention and control of Mycobacterium avium subspecies paratuberculosis infection.

Author

Barkema, H. W., Orsel, K., Nielsen, S. S., Koets, A. P., Rutten, V. P. M. G., Bannantine, J. P., Keefe, G. P., Kelton, D. F., Wells, S. J., Whittington, R. J., Mackintosh, C. G., Manning, E. J., Weber, M. F., Heuer, C., Forde, T. L., Ritter, C., Roche, S., Corbett, C. S., Wolf, R., and Griebel, P. J.

Subjects
MYCOBACTERIUM avium, PARATUBERCULOSIS, CROHN'S disease, RATE of return, MANAGEMENT
Abstract

Summary: In the last decades, many regional and country‐wide control programmes for Johne's disease (JD) were developed due to associated economic losses, or because of a possible association with Crohn's disease. These control programmes were often not successful, partly because management protocols were not followed, including the introduction of infected replacement cattle, because tests to identify infected animals were unreliable, and uptake by farmers was not high enough because of a perceived low return on investment. In the absence of a cure or effective commercial vaccines, control of JD is currently primarily based on herd management strategies to avoid infection of cattle and restrict within‐farm and farm‐to‐farm transmission. Although JD control programmes have been implemented in most developed countries, lessons learned from JD prevention and control programmes are underreported. Also, JD control programmes are typically evaluated in a limited number of herds and the duration of the study is less than 5 year, making it difficult to adequately assess the efficacy of control programmes. In this manuscript, we identify the most important gaps in knowledge hampering JD prevention and control programmes, including vaccination and diagnostics. Secondly, we discuss directions that research should take to address those knowledge gaps. [ABSTRACT FROM AUTHOR]

Published
2018
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