32 results on '"Niknam G"'
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2. Laimydorus zehsaziani n. sp., a new member of the genus from northwest of Iran, with additional data on Labronema vulvapapillatum (Meyl, 1954) Loof & Grootaert, 1981 (Dorylaimida: Dorylaimidae)
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Zahedi Asl, E., primary, Niknam, G., additional, and Vazifeh, N., additional
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- 2023
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3. Graph representation learning based on deep generative gaussian mixture models
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Niknam, G, Molaei, S, Zare, H, Clifton, D, and Pan, S
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Artificial Intelligence ,Cognitive Neuroscience ,Computer Science Applications - Abstract
Graph representation learning is an effective tool for facilitating graph analysis with machine learning methods. Most GNNs, including Graph Convolutional Networks (GCN), Graph Recurrent Neural Networks (GRNN), and Graph Auto-Encoders (GAE), employ vectors to represent nodes in a deterministic way without exploiting the uncertainty in hidden variables. Deep generative models are combined with GAE in the Variational Graph Auto-Encoder (VGAE) framework to address this issue. While traditional VGAE-based methods can capture hidden and hierarchical dependencies in latent spaces, they are limited by the data’s multimodality. Here, we propose the Gaussian Mixture Model (GMM) to model the prior distribution in VGAE. Furthermore, an adversarial regularization is incorporated into the proposed approach to ensure the fruitful impact of the latent representations on the results. We demonstrate the performance of the proposed method on clustering and link prediction tasks. Our experimental results on real datasets show remarkable performance compared to state-of-the-art methods.
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- 2023
4. Lethal and sublethal effects of Iranian isolates of Steinernema feltiae and Heterorhabditis bacteriophora on the Colorado potato beetle, Leptinotarsa decemlineata
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Ebrahimi, L., Niknam, G., and Lewis, E. E.
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- 2011
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5. Study of two species, one new and one known, of the genus Aporcella Andrássy, 2002 (Dorylaimida, Aporcelaimidae) from Iran, with a note on its phylogeny
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Naghavi, A., primary, Niknam, G., additional, Vazifeh, N., additional, and Peña-Santiago, R., additional
- Published
- 2020
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6. Morphological and Molecular Characterization of Talanema eshtiaghii sp. n. (Dorylaimida, Qudsianematidae) from Iran
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Vazifeh Nasir, Niknam Gholamreza, Jabbari Habibeh, and Peña-Santiago Reyes
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bayesian inference ,d2–d3 rdna ,phylogeny ,taxonomy ,Biology (General) ,QH301-705.5 - Abstract
A new species of the genus Talanema, recovered from the northwest of Iran, was described based on morphological, morphometric, and molecular data. Talanema eshtiaghii sp. n. was characterized by its 1.45–1.68 mm long body, lip region offset by constriction and 13–15 μm wide, odontostyle 15–18 μm long, double guiding ring, neck 312–362 μm long, pharyngeal expansion occupying 41–43% of the total neck length, uterus tripartite, and 111–189 μm long or 2.1–3.2 body diameters, vulva transverse (V = 55–58), tail similar in both sexes, conical with a dorsal concavity (30–44 μm, c = 33–56, c’ = 1.0–1.6), spicules 49–56 μm long, and 14–18 shortly spaced ventromedian supplements in front of the level of the anterior end of spicules, with distinct hiatus. It was compared to four closely similar species, with emphasis on the most relevant traits to distinguish them. Molecular phylogenetic studies using partial sequence of the 28S rDNA (D2–D3 segment) revealed that the new species forms a clade with other currently sequenced representatives of Talanema, tentatively supporting the monophyly of this genus.
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- 2023
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7. Eudorylaimus kahaqensis Kazemi & Niknam & Jabbari & Peña-Santiago 2018, sp. n
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Kazemi, E., Niknam, G., Jabbari, H., and Peña-Santiago, R.
- Subjects
Eudorylaimus kahaqensis ,Qudsianematidae ,Nematoda ,Eudorylaimus ,Dorylaimida ,Animalia ,Adenophorea ,Biodiversity ,Taxonomy - Abstract
Eudorylaimus kahaqensis sp. n. (Figs 1–6) Material examined: Twenty females, twelve males and several juveniles, in acceptable (mostly good) condition. Measurements: See Table 1. Description. Adult: Slender nematodes (a = 29–39) of medium size, 1.40–1.75 mm long. Body cylindrical, tapering towards both ends as the tail is conical. Habitus regularly curved ventrad, an open ‘C’ or ‘J’ shape in females, ‘J’ or ‘G’ shaped in males. Cuticle 2.0–2.5 µm thick in the anterior region, 2.0–3.5 µm at mid-body and 3.0–4.0 µm on tail; outer layer with fine transverse striation throughout the body, perceptible even under LM; inner layer thicker than the outer one, especially visible at caudal region. Lip region anteriorly truncate, nearly continuous with the adjacent body, 2.8–3.2 times as wide as high, and ca one half (45–50%) of body diameter at neck base; anterior margin visibly corrugated or wrinkled. SEM observations: lips totally amalgamated; labial and cephalic papillae distinct but weakly protruding, button-like; oral field broad, with coarse radial striation—visibly stronger than the transverse striation of the adjacent body, and responsible for the corrugated anterior marginrunning from the oral aperture to the posterior margin of lip region; oral aperture apparently small. A moderately sclerotized but perceptible cephalic framework is present. Amphidial fovea stirrup-shaped, aperture a transverse slit 9–11 µm wide and occupying ca one-half (50–56%) of lip region diameter. Cheilostom wider than usual, with convex walls. Odontostyle equal to lip region diameter long, comparatively slender (9–12 times as long as wide), 1.1–1.3% of total body length, and with aperture 6–8 µm long or occupying less than one-half (33–44%) of total length. Guiding ring simple, somewhat plicate, and located at 8–11 µm or 0.4–0.5 times the lip region diameter from the anterior end. Odontophore rod-like, 1.7–2.0 times the odontostyle in length, its junction with the pharyngeal lining rather inconspicuous. Anterior portion of pharynx slender but muscular, enlarging very gradually into the basal expansion that is 7.4–9.0 times as long as wide, 4.0–4.6 times as long as the body diameter at neck base and occupies 45–53% of total neck length; gland nuclei located as follows: DO = 60–66, DN = 66–70, S1N1 = 78–83, S1N2 = 82–88, S2N = 90–94, S2O = 94; DN remarkably posterior in position, far from pharyngeal enlargement, S1N1 conspicuously longer than wide, with its nucleolus much larger than that of S1N2 and even slightly larger than those of S2N, and S2O visibly behind S 2N. Nerve ring at 128–145 µm or 35–37% of the neck length from the anterior end. One coelomocyte 7.5– 13 x 5.5–10.0 µm is present in dorsal position in all the specimens examined a short distance behind the nerve ring, at 145–162 µm from the anterior end. Cardia cylindroid, 13.5–19.0 x 7.0–8.5 µm. A dorsal cell mass is always present at the pharyngo-intestinal junction. Intestine without any special differentiation. Female: Genital system didelphic-amphidelphic, with both branches of similar morphology and length, the anterior 192–264 µm or 11–14% of total body length, the posterior 182–273 µm or 12–14% of total body length. Ovaries reflexed, 77–101 µm long, not reaching the oviduct-uterus junction; oocytes in several rows in the germinative zone, then in one row. Oviduct 84–120 µm or 2.0–2.8 times the corresponding body diameter long, consisting of a slender portion made of prismatic cells and an appreciably longer than wide pars dilatata with visible lumen and often containing sperm cells. A marked narrowing surrounded by a weak muscular ring is present separating oviduct and uterus. Uterus a simple tube-like structure 62–125 µm or 1.5–2.3 times the corresponding body diameter long, often containing sperm cells as well. Vagina 26–33 µm long, extending to 63– 70% of body diameter: pars proximalis 18–24 x 16 –22 µm, with somewhat sigmoid walls and surrounded by moderately developed musculature; pars refringens consisting of two trapezoidal pieces 3.0–3.5 x 7.0–7.5 µm and a combined width of 15–18 µm; pars distalis 5.5–6.5 µm long. One gland cell (granular in appearance) is present close the vagina both anteriorly and posteriorly. Vulva a transverse slit. Intestine-prerectum junction especially granular and colored in all the specimens examined. Prerectum 1.4–1.6, rectum 1.1–1.2 times the anal body diameter in length. Caudal region regularly curved ventrad and conical (somewhat) elongate with finely rounded tip; hyaline portion well developed, 17–30 µm or 28–45% of the total tail length. Male: Genital system diorchic, with opposite testes. In addition to the ad-cloacal pair situated at 11–15 µm from the cloacal aperture, there is a series of 7–9 irregularly spaced (12–15 µm apart), ventromedian supplements, the most posterior of which is located at 22–28 µm from the ad-cloacal pair, at the level of or a short distance behind the anterior end of spicules. A distinct pre-cloacal space (hiatus) is therefore not present. Spicules dorylaimid, 1.7–1.9 times longer than the body diameter at level of cloacal aperture, 3.9–4.2 times longer than wide, and curved ventrad 124–130º; head 12–16 µm long, occupying 23–30% of total spicule length, 2.0–2.3 times as long as wide, with its dorsal side distinctly longer than the ventral one and slightly curved; median piece 35–41 µm long, 6.4–7.6 times longer than wide, occupying 37–46% of spicule width, and reaching the spicule posterior tip. Lateral guiding piece 13–17 µm long, 5.2–6.8 times longer than wide, with slightly bifid end. Prerectum 1.8– 2.5, cloaca 1.4–1.7 times the body diameter at level of cloacal aperture. Caudal region similar to that of female, its hyaline portion 22–25 (11.5 in one specimen, probably aberrant) µm long, occupying 39–40 (26)% of total tail length. Diagnosis. The new species is characterized by its 1.40–1.75 mm long body, lip region nearly continuous and 17–21 µm wide and bearing a weakly sclerotized but distinct cephalic framework, cheilostom broad and with convex walls, odontostyle 21–23 µm long with aperture occupying 33–44% of its length, presence of a dorsal coelomocyte a short distance behind the nerve ring, neck 347–397 µm long, DN rather posterior (66–70%), pharyngeal expansion 162–205 µm or occupying 45–53% of total neck length, presence a dorsal cell mass at level of pharyngo-intestinal junction, V = 48–52, caudal region conical (somewhat) elongate (50–73 µm, c = 24–30, c’ = 1.9–2.6 in females, 45–68 µm, c = 22–32, c’ = 1.7–2.3 in males) and regularly curved ventrad with large hyaline portion, spicules 48–55 µm long and 7–9 irregularly spaced ventromedian supplements lacking hiatus. Relationships. Eudorylaimus kahaqensis sp. n. is easily recognizable by an unusual combination of features, but its conical, somewhat elongate, caudal region in both sexes and the position of its most posterior ventromedian supplement at the level of the anterior end of the spicules and not too far anterior to the pre-cloacal pair (i. e., lacking a distinct hiatus) raise doubts about its true generic identity (see further discussion below), since it possesses characteristics of the genera Eudorylaimus Andrássy, 1959, Allodorylaimus Andrássy, 1986 and Epidorylaimus Andrássy, 1986. Within Eudorylaimus, it resembles several species (some without known males), in particular E. altherri Tjepkema et al., (1971), E. nudicaudatus Heyns, 1993 and E. unicus Khan & Araki, 2000. It differs from E. altherri in its nearly continuous (vs offset by constriction and visibly wider than the adjacent body) lip region, longer odontostyle (21–23 vs 19.3 ± 1.2 µm), shorter female prerectum (43–50 vs 90 ± 22 µm), pars refringens vaginae with trapezoidal (vs triangular) pieces, and male as frequent as female (vs male absent). From E. nudicaudatus, it differs in its nearly continuous (vs offset by constriction) lip region, longer odontostyle (21–23 vs 13–15 µm, equal to vs distinctly shorter than lip region diameter), more posterior vulva (V = 48–52 vs V = 43–48), comparatively longer female tail (c = 24–30 vs c = 32–46) with long (vs very short) hyaline portion, and male lacking (vs having) hiatus. It can be distinguished from E. unicus by its nearly continuous (vs offset by constriction) lip region, more posterior DN (vs close the pharyngeal expansion), longer vagina (extending to 63–70% vs up to one-half of body diameter), longer female tail (c’ = 1.9–2.6 vs c’ = 1.6–1.8) with different morphology (ending in a finely rounded vs relatively coarse tip), and male present (vs absent). The new species also resembles E. rugosus (Andrássy, 1957) Andrássy, 1959 in several aspects (general morphology and morphometry, lip region nearly truncate and visibly slender odontostyle) but differs in its longer tail (c = 24–30, c’ = 1.9–2.6 vs c = 30–33, c’ = 1.5–1.6). It can also be compared to E. pseudobokori Zell, 1986 in its general morphology and morphometry as well its comparatively long caudal region, but can be distinguished by the morphology of lip region (truncate and continuous vs angular and offset) and odontostyle (slender vs more robust), and the number (7–9 vs 5) and arrangement of ventromedian supplements (most posterior of them at level of or slightly posterior to vs visibly anterior to the end of spicules). In lacking a distinct precloacal space in males, the new species also resembles members of Allodorylaimus, especially A. aljabaranus Quijano et al., (1991) and A. digiturus (Thorne, 1939) Andrássy, 1986. It differs from A. aljabaranus in its broader (17.0–21 vs 14–16 µm) and amalgamated (vs lips separated and angular) lip region, and fewer ventromedian supplements (7–9 vs 10–15) with different arrangement (only the most posterior ventromedian supplement located at the level of the anterior end of the spicules or a short distance posterior vs two or three ventromedian supplements well within the range of the spicules). From A. digiturus, a poorly known species described on the basis of only one male, it differs in its larger general size (body length 1.40–1.75 vs 1.30 mm), broader lip region (17.0–21 vs ca 12 µm), longer (21–23 vs ca 12 µm) and more slender (9–12 vs ca 6 times as long as wide) odontostyle, and fewer ventromedian supplements (7–9 vs 11) with different arrangement (only the most posterior ventromedian supplement located at the level of the anterior end of the spicules or a short distance behind it vs two ventromedian supplements well within the range of the spicules). In its general morphology, and in particular in its comparatively long tail in both females and males, and males lacking hiatus, the new species resembles some Epidorylaimus representatives (see the updated diagnosis and compendium by Ahmad et al., 2016), especially E. consobrinus (de Man, 1880) Andrássy, 1986 and E. filicaudatus (Tjepkema et al., 1971) Andrássy, 1986. The new species differs from E. consobrinus, a poorly characterized species, in its weakly (vs distinctly) angular lip region, and shorter caudal region (c’ = 1.9–2.6 vs c’ = 2.7–4.3 in females) with different morphology (with finely rounded vs acute tip, large vs no hyaline portion). It can be distinguished from E. filicaudatus by having weakly (vs distinctly) angular lip region, more attenuated odontostyle (9–12 vs up to 7 times as long as wide), shorter caudal region (50–73 vs 81–123 µm), and frequent males (vs male unknown). Finally, some traits (continuous lip region, broad cheilostom) of the new species resemble those found in species of the genus Chrysonema Thorne, 1929, but it does not fit at all the very peculiar morphological pattern of this taxon (see Andrássy, 2009), which is characterized by, among other diagnostic features, a very slender body (a - ratio very usually over 50), comparatively small and attenuate odontostyle, absence of pars refringens vaginae, tail conical elongate (c’ > 4), tapering very gradually, and male bearing subventral caudal papillae. Type locality and habitat. The new species has been collected from Iran, East Azarbaijan province, north of Maragheh, Kahaq region (GPS coordinate 47º13´35.7´´E, 37º28´12.1´´ N), where it was found in the rhizosphere soil of walnut, spruce and willow. Type material. Female holotype, 10 female and eight male paratypes deposited in the Nematode Collection of Nematology Laboratory, Department of Plant Protection, Faculty of Agriculture, University of Tabriz, Tabriz, Iran. Two female and two male paratypes with the Nematode Collection, University of Jaén, Spain. Etymology. The specific epithet refers to the geographical origin of the new species in Kahaq region, Iran. Remarks. The new species herein described is an excellent example of the problematic taxonomy of the conical-tailed species of the family Qudsianematidae. It is characterized by a combination of features that allows its relatively easy identification but that, at the same time, raises doubt about its generic identity. Its conical, somewhat elongate caudal region is intermediate between those observed in species of Eudorylaimus, which tend to be shorter, and those of Epidorylaimus species, which tend to be longer, but there is no distinct borderline between the two genera. The location of the posteriormost ventromedian supplement is also notable: situated at approximately the level of the anterior end of the spicules, it is not too much farther from the adcloacal pair than from the penultimate ventromedian supplement of the series, so that a pre-cloacal space (hiatus) is not distinctly perceptible, again representing an intermediate condition between Eudorylaimus (males with distinct hiatus) and Allodorylaimus and Epidorylaimus (both with males lacking hiatus, i.e. with one or more ventromedian supplements within the range of the spicules). With due caution, the new species has been provisionally classified under Eudorylaimus because its general morphology fits better the pattern of that genus. Nevertheless, leaving aside the tail length and the presence/absence of a hiatus, it should be emphasized that the new species displays other features (nearly truncate and continuous lip region with corrugated anterior margin, broad cheilostom, weakly sclerotized but perceptible cephalic framework, presence of a coelomocyte shortly behind the nerve ring, dorsal gland pharyngeal nucleus in rather posterior position, etc.) that conform a peculiar pattern that might deserve separate generic status if other species are found that share it.
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- 2018
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8. Eudorylaimus kahaqensis sp. n. (Nematoda: Dorylaimida: Qudsianematidae), an interesting new species from Iran
- Author
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KAZEMI, E., primary, NIKNAM, G., additional, JABBARI, H., additional, and PEÑA-SANTIAGO, R., additional
- Published
- 2018
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9. Metaxonchium persicum Pe��a-Santiago, Niknam, ��lvarez-Ortega & Jabbari, 2014, sp. n
- Author
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Pe��a-Santiago, R., Niknam, G., ��lvarez-Ortega, S., and Jabbari, H.
- Subjects
Nematoda ,Dorylaimida ,Animalia ,Adenophorea ,Metaxonchium ,Biodiversity ,Metaxonchium persicum ,Belondiridae ,Taxonomy - Abstract
Metaxonchium persicum sp. n. (Figs 1���4) Morphometrics. See Table 1. Description. Type population from Azarbaijan rangelands (6 ♀♀ + 3 ♂♂). Adult: Slender to very slender nematodes of medium to large size, 2.46���3.12 mm long. Body cylindrical, visibly tapering towards the anterior end, less so towards the posterior end since the caudal region is short and conoid. Habitus curved ventrad upon fixation, C- or G-shaped. Cuticle three-layered, consisting of inner layer thicker than the others, especially obvious at caudal region where it bears distinct radial striation, an intermediate and more transparent layer, and a thinner outer layer nearly smooth under LM but bearing very fine transverse striation under SEM; cuticle thickness 2���3 ��m in anterior region, 4���6 ��m at mid-body and 8���15 ��m on dorsal side of tail. Cervical lacunae often clearly visible. Lateral chord comparatively narrow, 5���7 ��m wide or up to one-tenth (7���10 %) of mid-body diameter, of granular nature and lacking any other differentiation. Lip region rounded to slightly truncate anteriorly, offset by constriction, 2.2���2.8 times as broad as high or less than one-sixth (11���15 %) of body diameter at neck base; lips separate, under SEM appearing conoid, tapering toward the oral aperture, and with deep radial incisures in between; labial and cephalic papillae very low, not interfering the labial contour. Amphid fovea cup-like, its aperture 7���9 ��m wide or occupying about four-fifths (75���82 %) of lip region diameter. Cheilostom a truncate cone, lacking any differentiation. Odontostyle small, somewhat fusiform, as thick as the cuticle at its level, equal to or hardly longer (1.0��� 1.2 times) than lip region diameter, 5.8���6.8 times as long as wide and 0.36���0.40 % of body length; aperture 3.0��� 3.5 ��m long, occupying one-fourth to one-third (25���35 %) of total length. Guiding ring thin, simple but visibly refractive, at 11���14 ��m or 0.8���0.9 times the lip region diameter from the anterior end. Odontophore rod-like, 1.8���2.2 times the odontostyle length, bearing a very slight thickening at its approximate midpoint. Pharynx consisting of a slender and weakly muscular anterior portion, which is separated from the basal expansion by a short isthmus-like narrowing, and bearing a well developed, spindle-shaped thickening with valvelike structures, situated at 117���155 ��m from anterior end; basal expansion 13���20 times as long as broad, 7.5���9.9 times longer than body diameter at neck base, and occupying up to three-fourths (68���73 %) of total neck length; a very distinct spiral muscular sheath, with nearly straight muscular bands, envelops the whole basal expansion. Cardia tongue-like, 22���25 ��m long x 13���14 ��m wide, surrounded by intestinal tissue. Caudal region conoid with broadly rounded terminus, ventrally straighter, dorsally more convex; caudal pores two pairs at the posterior half of tail, one lateral, another subdorsal. Female: Genital system monodelphic-opisthodelphic. Anterior branch 117���324 ��m long or 6���11 % of body length, and consisting of a long uterine sac often devoid of sperm cells, and a small solid terminal mass probably representing oviduct and/or ovary remnants. Posterior branch very long and impossible to measure as its tract always appears strongly convoluted: reflexed ovary large, 170���370 ��m long, with oocytes arranged first in several rows and then in a single row; oviduct joining the ovary subterminally, 135���142 ��m long or 1.4���2.1 body diameters, and consisting of a tubular part made of prismatic cells and a well developed pars dilatata with distinct lumen and occasionally containing sperm cells. A strong sphincter separates oviduct and uterus. Uterus very long and tripartite, i.e., provided with a proximal region with very wide lumen, a convoluted long intermediate region with narrow lumen and containing numerous refractive, irregular elements (apophyses), and a large spherical distal pars dilatata. One female bearing a uterine egg, 145 x 52 ��m. Vagina 32���42 ��m long, extending inwards about one-half (43���55 %) of the corresponding body diameter; pars proximalis longer than wide, 21���24 x 15 ���20 ��m, with convergent walls and surrounded by moderately developed, circular musculature; pars refringens (in lateral view) consisting of two trapezoidal pieces measuring 4��� 5 x 7���8 ��m and with a combined width of 9���11 ��m; pars distalis 3���7 ��m long. Vulva a somewhat posterior transverse slit, about 10 ��m long. Prerectum 4���10, rectum 1.0��� 1.4 anal body diameters long. Anus a straight transverse slit about 8 ��m long. Male: Genital system diorchic, with opposite testes. In addition to the adcloacal pair, situated at 15���17 ��m from cloacal aperture, there is a series of 7���10 ventromedian supplements 17���34 ��m apart, the posteriormost of which is situated at 38���50 ��m from the adcloacal pair; hiatus lacking as at least two ventromedian supplements lie within the range of spicules. Spicules dorylaimoid, curved ventrad, relatively slender (7.8���8.3 times as long as wide) and long (1.8���2.2 times the cloacal body diameter), and with a rather narrow anterior part. Lateral guiding pieces 19���20 ��m long, 9���10 six times as long as wide. Other material examined (9 ♀♀ from three locations). These nine females are nearly identical to those of type population. They have slightly smaller general size, but largely overlap in their morphometric ranges. In many of these females the pars refringens vaginae is variably developed, often with weaker sclerotization than usual. It is also remarkable that no male has been collected together with the females and that these do not contain sperm cells. Diagnosis. The new species is characterized by its body length of 2.46���3.12 mm, lip region offset by constriction and 8���11 ��m wide, odontostyle fusiform and 10���12 ��m long, neck 773���1150 ��m long, anterior portion of pharynx bearing a spindle-shaped thickening with valve-like structures inside, both parts of the pharynx separated by a short isthmus-like narrowing, pharyngeal expansion 531���825 ��m long and occupying up to threefourths of total neck length, female genital system monodelphic-opisthodelphic, anterior genital branch reduced to a large uterine sac and a small terminal mass, posterior uterus long and tripartite with a intermediate region bearing apophyses, V = 53���57, caudal region conoid with broadly rounded terminus (24���35 ��m, c = 79���105, c��� = 0.6���0.9), spicules 93���102 ��m long and 7���10 spaced ventromedian supplements, at least two of them within the range of spicules. Relationships. In having comparatively large general size (body length more than 2 mm), echinophorous uterus (i.e., bearing abundant, refractive, spine-like elements or apophyses) and posterior vulva position (V more than 50), the new species is very similar to M. bihariense (Popovici, 1990) Andr��ssy, 1996, M. giennense Pe��a- Santiago & Coomans, 1990 and M. paravalvulatum Pe��a-Santiago & Coomans, 1990. It differs from M. bihariense in its wider lip region (8���11 vs 7���8 ��m, n= 14 in Romanian material), longer neck (773���1000 vs 600���775 ��m; b = 2.8���3.4 vs b = 3.2 ���4.0), presence of a valvate swelling at the anterior section of pharynx (vs absent or overlooked), an isthmus-like narrowing separating both pharyngeal sections (vs apparently no special differentiation marking this separation), pars refringens vaginae readily perceptible (vs weakly sclerotized if present), and male known (vs unknown). From M. giennense in the presence (vs absence) of valves at the spindle-shaped swelling in the anterior slender portion of pharynx, larger spicules (93���102 vs 71���87 ��m long, n= 9), and lower number of ventromedian supplements (7���10 vs 10���14) with different arrangement (two vs at least three of them within the spicules range, with the last two somewhat shifted from the midventral position, one on the left, the other on the right in M. giennense). And from M. paravalvulatum in its longer male tail (37���43 vs 30 ��m), larger spicules (93���102 vs 71 ��m long) with different shape (more slender and having a long slender anterior part vs more robust and lacking an especially narrow anterior part), and lower number of ventromedian supplements (7���10 vs 11) with different arrangement (two vs only one distinctly lying within the range of spicules). Type locality and habitat. The new species was collected from northwest Iran, Mahmood Abad region, East Azarbaijan province (GPS coordinates: N 38 �� 48 ��� 43.5 E 46 �� 51 59.6 ���), in Arasbaran rangelands, during 2012. Other localities and habitats. Dolat Abad district, Marand, in an orchard with fruit trees; Ass district, Arasbaran, in a natural pasture; and Hervi district, around Tabriz, in an orchard with fruit trees. Type material. Female holotype, two female and two male paratypes deposited in the Collection of Nematology Lab., University of Tabriz, Tabriz, Iran. Two female and one male paratypes deposited in the Nematode Collection of the University of Ja��n, Spain. Etymology. The specific epithet refers to the geographical origin of this species in Persia, the former name of Iran. Remarks. Metaxonchium persicum sp. n. is morphometrically very similar to M. giennense and M. paravalvulatum, making the identification of their respective females especially problematic. Nevertheless, the morphology of the spicules and the number and arrangement of the ventromedian supplements seem to be sufficiently different to support a provisionally separate status for these three species. Holotype Paratypes Character n ♀ 5 ♀♀ 3 ♂♂ 4 ♀♀ 4 ♀♀ ♀ 15 ♀&female, Published as part of Pe��a-Santiago, R., Niknam, G., ��lvarez-Ortega, S. & Jabbari, H., 2014, Metaxonchium persicum sp. n. from Iran (Nematoda, Dorylaimida, Belondiridae), with an updated taxonomy of the genus, pp. 501-517 in Zootaxa 3785 (4) on pages 502-504, DOI: 10.11646/zootaxa.3785.4.1, http://zenodo.org/record/229458, {"references":["Popovici, I. (1990) New and known nematode species (Nematoda: Dorylaimida) from Romania. Nematologica, 35 (1989), 438 - 454. http: // dx. doi. org / 10.1163 / 002825989 x 00188","Andrassy, I. (1996) Free-living nematodes in the Bukk mountains, Hungary. The fauna of the Bukk National Park, 33 - 63.","Pena-Santiago, R. & Coomans, A. (1990) Nematodes of the order Dorylaimida from Andalucia Oriental, Spain. Tylencholaimellus hispanicus sp. n. and two new species of Axonchium Cobb, 1920. Nematologica, 36, 144 - 160. http: // dx. doi. org / 10.1163 / 002925990 x 00121"]}
- Published
- 2014
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10. Metaxonchium persicum sp. n. from Iran (Nematoda, Dorylaimida, Belondiridae), with an updated taxonomy of the genus
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Peña-Santiago, R., Niknam, G., Álvarez-Ortega, S., and Jabbari, H.
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Nematoda ,Dorylaimida ,Animalia ,Adenophorea ,Biodiversity ,Belondiridae ,Taxonomy - Abstract
Peña-Santiago, R., Niknam, G., Álvarez-Ortega, S., Jabbari, H. (2014): Metaxonchium persicum sp. n. from Iran (Nematoda, Dorylaimida, Belondiridae), with an updated taxonomy of the genus. Zootaxa 3785 (4): 501-517, DOI: http://dx.doi.org/10.11646/zootaxa.3785.4.1
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- 2014
11. Metaxonchium Coomans & Nair 1975
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Pe��a-Santiago, R., Niknam, G., ��lvarez-Ortega, S., and Jabbari, H.
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Nematoda ,Dorylaimida ,Animalia ,Adenophorea ,Metaxonchium ,Biodiversity ,Belondiridae ,Taxonomy - Abstract
Taxonomy of Metaxonchium Coomans & Nair, 1975 = Axonchium (Metaxonchium) Cobb, 1920 (Coomans & Nair, 1975) = Axonchium (Discaxonchium) Cobb, 1920 (Coomans & Nair, 1975) = Axonchium (Epaxonchium) Cobb, 1920 (Coomans & Nair, 1975) = Axonchium (Spiculaxonchium) Cobb, 1920 (Ahmad & Jairajpuri, 1982; but see below) Brief historical outline. In the last paper of their excellent revision of the genus Axonchium Cobb, 1920, Coomans and Nair (1975; see also Jairajpuri & Ahmad, 1992) proposed its division into nine ���groups or subgenera��� (p. 325), one of them Metaxonchium, with three species, namely Axonchium (Metaxonchium) coronatum (de Man, 1907) Thorne & Swanger, 1936, which was proposed as type species, A. (M.) leptocephalum Altherr, 1953 and A. (M.) vaginatum Jairajpuri, 1965. The subgenus Metaxonchium was characterized and separated from its relatives by having, among other features, lip region offset, fusiform odontostyle, anterior portion of pharynx quite muscular and lacking a spindle-shaped portion, pars refringens vaginae present (= ���vagina sclerotized���), and males rare with small spicules. In describing two new Axonchium species from the Iberian Peninsula, Pe��a-Santiago and Coomans (1990) were aware that the differences between Metaxonchium and the subgenus Epaxonchium, also proposed by Coomans and Nair (op. cit.), were not significant and regarded the latter as a junior synonym of the former. Andr��ssy (1991) raised the rank of Metaxonchium to generic level and stated (see also Andr��ssy, 2009) that the subgenera Discaxonchium Coomans & Nair, 1975, Epaxonchium and Spiculaxonchium Ahmad & Jairajpuri, 1982 may be also classified under it. In 1996, the same author described the new species M. echinulatum from Hungary and provided an updated list of 19 valid species. Morphological characterization. Metaxonchium is a relatively homogeneous taxon, mainly characterized by its lip region with separate lips and offset by constriction, odontostyle short and fusiform, both pharyngeal sections separated by an isthmus-like narrowing, pars refringens vaginae well developed, caudal region short and rounded to convex conoid in both sexes, and spaced ventromedian supplements without hiatus. A few species, however, do not totally fit this general pattern and introduce some heterogeneity to the group: M. bihariense lacks a perceptible isthmus-like narrowing between both pharyngeal regions; M. choristum (Thorne, 1939) Andr��ssy, 1996 and M. serpens (Thorne, 1939) Andr��ssy, 1996 bear a series of 19���26 and 22���30 contiguous ventromedian supplements with and without hiatus, respectively; M. spiculum shows a peculiar combination of characters (deep constriction rather than an isthmus-like narrowing between both pharyngeal sections, which are abutting, spicules with very atypical morphology (bearing a very short median piece), and weakly developed ventromedian supplements arranged in two separate groups), which raises serious doubt about its belonging to Metaxonchium; M. tacitum (Ahmad & Jairajpuri, 1982) Andr��ssy, 1996 has abutting pharyngeal sections as well; and M. thornei (Hechler, 1969) Andr��ssy, 1996 bears 13���15 contiguous ventromedian supplements with hiatus. A few other morphological features display significant variation: presence/absence of valve-like elements in a swelling of the anterior pharyngeal section, presence/absence of apophyses in the uterus, and shape of pars refringens vaginae. Accordingly, the separation of most species is principally based on morphometrics. Diagnosis (emended). Medium to large-sized nematodes, body 1.6���4.2 mm long. Cuticle bi- or tri-layered, with fine transverse striation and especially thick at caudal region. Lip region offset by constriction, with separate lips. Amphid openings encircling most the lip region base. Odontostyle fusiform, 8���23 ��m long or about equal to lip region diameter. Guiding ring simple, visibly refractive. Odontophore rod-like, lacking any significant differentiation. Both pharyngeal sections typically separated by a isthmus-like narrowing, very occasionally by a constriction or without differentiation; basal expansion large, occupying up to three-fourths of total neck length. Cardia tongue-like, well developed. Female genital system mono-opisthodelphic, with anterior branch reduced to a more or less (but usually well-) developed uterine sac plus a vestigial terminal cell mass, posterior uterus long and often tripartite with apophyses (echinophorous uterus, cf. Andr��ssy, 1991) in several species; pars refringens vaginae well (very occasionally less) developed; vulva a transverse slit. Tail similar in both sexes, short and rounded to convex conoid. Males often frequent, with variably sized (39���107 ��m long) and shaped spicules, and 7��� 17 spaced ventromedian supplements (but 19���30 contiguous in two species), with or without hiatus. Relationships. Within the subfamily Axonchiinae Thorne, 1964, which contains eight genera (cf. Andr��ssy, 2009), Metaxonchium resembles the genera Axonchium, Dactyluraxonchium Coomans & Nair, 1975 and Syncheilaxonchium Coomans & Nair, 1975, but it can easily separated from all of them in the presence of well developed pars refringens vaginae (vs totally absent). Besides, it differs from Dactyluraxonchium in vaginal morphology (vs lumen first very wide and elliptical) and caudal region (vs conical subdigitate, distinctly longer than anal body diameter); and from Syncheilaxonchium in the morphology of lip region (vs non-offset, with amalgamated lips)., Published as part of Pe��a-Santiago, R., Niknam, G., ��lvarez-Ortega, S. & Jabbari, H., 2014, Metaxonchium persicum sp. n. from Iran (Nematoda, Dorylaimida, Belondiridae), with an updated taxonomy of the genus, pp. 501-517 in Zootaxa 3785 (4) on page 508, DOI: 10.11646/zootaxa.3785.4.1, http://zenodo.org/record/229458, {"references":["Coomans, A. & Nair, P. (1975) The genus Axonchium (Nematoda: Belondiridae). VI. Atypical species, keys, subgenera and conclusions. Nematologica, 21, 296 - 332. http: // dx. doi. org / 10.1163 / 187529275 x 00059","Cobb, N. A. (1920) One hundred new nemas. (Type species of 100 new genera). Contributions to a Science of Nematology, 9, 217 - 243.","Ahmad, W. & Jairajpuri, M. S. (1982) Studies on the genus Axonchium Cobb, 1920 from India. Nematologica, 28, 21 - 33. http: // dx. doi. org / 10.1163 / 187529282 x 00484","Jairajpuri, M. S. & Ahmad, W. (1992) Dorylaimida. Free-living, Predaceous and Plant-parasitic Nematodes. Oxford & IBH Publishing Co. Pvt. Ltd. New Delhi, India, 458 pp.","de Man, J. G. (1907) Observations sur quelques especes de nematodes terrestres libres de l'Ile de Walcheren. Annales de la Societe Royale de Zoologie et Malacologie de Belgique, 41 (1906), 161 - 174.","Thorne, G. & Swanger, H. H. (1936) A monograph of the nematode genera Dorylaimus Dujardin, Aporcelaimus n. gen., Dorylaimoides n. gen., and Pungentus n. gen. Capita Zoologica, 6, 1 - 223.","Altherr, E. (1953) Nematodes du sol du Jura vaudois et francais. I. Bulletin de la Societe Vaudoise des Sciences Naturelles, 65, 429 - 460.","Jairajpuri, M. S. (1965) A new species of the genus Axonchium Cobb with notes on the occurrence of A. caudatum Williams in India, and the taxonomic status of Discolaimus pakistanicus Timm and Bhuiyan. Proceedings of the Zoological Society of Calcutta, 18, 155 - 158.","Pena-Santiago, R. & Coomans, A. (1990) Nematodes of the order Dorylaimida from Andalucia Oriental, Spain. Tylencholaimellus hispanicus sp. n. and two new species of Axonchium Cobb, 1920. Nematologica, 36, 144 - 160. http: // dx. doi. org / 10.1163 / 002925990 x 00121","Andrassy, I. (1991) The free-living nematode fauna of the Batorliget Nature Reserves. The Batorliget Nature Reserve-after forty years, 129 - 197.","Andrassy, I. (2009) Free-living nematodes of Hungary. III. Pedozoologica Hungarica nº 5. Hungarian Natural History Museum. Budapest, Hungary, 608 pp.","Thorne, G. (1939) A monograph of the nematodes of the superfamily Dorylaimoidea. Capita Zoologica, 8, 1 - 261.","Andrassy, I. (1996) Free-living nematodes in the Bukk mountains, Hungary. The fauna of the Bukk National Park, 33 - 63.","Hechler, H. C. (1969) Taxonomy and morphology of Axonchium (Nematoda: Belondiroidea), and a description of A. thornei n. sp. Journal of Nematology, 1, 321 - 348.","Thorne, G. (1964) Nematodes of Puerto Rico: Belondiroidea, new superfamily, Leptonchidae Thorne, 1935, and Belonenchinae new family (Nematoda: Adenophorea, Dorylaimida). University of Puerto Rico Agriculture Experimental Station Technical Paper, No. 39, 1 - 51."]}
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- 2014
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12. Metaxonchium persicum Peña-Santiago, Niknam, Álvarez-Ortega & Jabbari, 2014, sp. n
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Peña-Santiago, R., Niknam, G., Álvarez-Ortega, S., and Jabbari, H.
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Nematoda ,Dorylaimida ,Animalia ,Adenophorea ,Metaxonchium ,Biodiversity ,Metaxonchium persicum ,Belondiridae ,Taxonomy - Abstract
Metaxonchium persicum sp. n. (Figs 1–4) Morphometrics. See Table 1. Description. Type population from Azarbaijan rangelands (6 ♀♀ + 3 ♂♂). Adult: Slender to very slender nematodes of medium to large size, 2.46–3.12 mm long. Body cylindrical, visibly tapering towards the anterior end, less so towards the posterior end since the caudal region is short and conoid. Habitus curved ventrad upon fixation, C- or G-shaped. Cuticle three-layered, consisting of inner layer thicker than the others, especially obvious at caudal region where it bears distinct radial striation, an intermediate and more transparent layer, and a thinner outer layer nearly smooth under LM but bearing very fine transverse striation under SEM; cuticle thickness 2–3 Μm in anterior region, 4–6 Μm at mid-body and 8–15 Μm on dorsal side of tail. Cervical lacunae often clearly visible. Lateral chord comparatively narrow, 5–7 Μm wide or up to one-tenth (7–10 %) of mid-body diameter, of granular nature and lacking any other differentiation. Lip region rounded to slightly truncate anteriorly, offset by constriction, 2.2–2.8 times as broad as high or less than one-sixth (11–15 %) of body diameter at neck base; lips separate, under SEM appearing conoid, tapering toward the oral aperture, and with deep radial incisures in between; labial and cephalic papillae very low, not interfering the labial contour. Amphid fovea cup-like, its aperture 7–9 µm wide or occupying about four-fifths (75–82 %) of lip region diameter. Cheilostom a truncate cone, lacking any differentiation. Odontostyle small, somewhat fusiform, as thick as the cuticle at its level, equal to or hardly longer (1.0– 1.2 times) than lip region diameter, 5.8–6.8 times as long as wide and 0.36–0.40 % of body length; aperture 3.0– 3.5 µm long, occupying one-fourth to one-third (25–35 %) of total length. Guiding ring thin, simple but visibly refractive, at 11–14 µm or 0.8–0.9 times the lip region diameter from the anterior end. Odontophore rod-like, 1.8–2.2 times the odontostyle length, bearing a very slight thickening at its approximate midpoint. Pharynx consisting of a slender and weakly muscular anterior portion, which is separated from the basal expansion by a short isthmus-like narrowing, and bearing a well developed, spindle-shaped thickening with valvelike structures, situated at 117–155 Μm from anterior end; basal expansion 13–20 times as long as broad, 7.5–9.9 times longer than body diameter at neck base, and occupying up to three-fourths (68–73 %) of total neck length; a very distinct spiral muscular sheath, with nearly straight muscular bands, envelops the whole basal expansion. Cardia tongue-like, 22–25 Μm long x 13–14 Μm wide, surrounded by intestinal tissue. Caudal region conoid with broadly rounded terminus, ventrally straighter, dorsally more convex; caudal pores two pairs at the posterior half of tail, one lateral, another subdorsal. Female: Genital system monodelphic-opisthodelphic. Anterior branch 117–324 Μm long or 6–11 % of body length, and consisting of a long uterine sac often devoid of sperm cells, and a small solid terminal mass probably representing oviduct and/or ovary remnants. Posterior branch very long and impossible to measure as its tract always appears strongly convoluted: reflexed ovary large, 170–370 µm long, with oocytes arranged first in several rows and then in a single row; oviduct joining the ovary subterminally, 135–142 Μm long or 1.4–2.1 body diameters, and consisting of a tubular part made of prismatic cells and a well developed pars dilatata with distinct lumen and occasionally containing sperm cells. A strong sphincter separates oviduct and uterus. Uterus very long and tripartite, i.e., provided with a proximal region with very wide lumen, a convoluted long intermediate region with narrow lumen and containing numerous refractive, irregular elements (apophyses), and a large spherical distal pars dilatata. One female bearing a uterine egg, 145 x 52 µm. Vagina 32–42 µm long, extending inwards about one-half (43–55 %) of the corresponding body diameter; pars proximalis longer than wide, 21–24 x 15 –20 Μm, with convergent walls and surrounded by moderately developed, circular musculature; pars refringens (in lateral view) consisting of two trapezoidal pieces measuring 4– 5 x 7–8 µm and with a combined width of 9–11 µm; pars distalis 3–7 Μm long. Vulva a somewhat posterior transverse slit, about 10 µm long. Prerectum 4–10, rectum 1.0– 1.4 anal body diameters long. Anus a straight transverse slit about 8 µm long. Male: Genital system diorchic, with opposite testes. In addition to the adcloacal pair, situated at 15–17 Μm from cloacal aperture, there is a series of 7–10 ventromedian supplements 17–34 Μm apart, the posteriormost of which is situated at 38–50 Μm from the adcloacal pair; hiatus lacking as at least two ventromedian supplements lie within the range of spicules. Spicules dorylaimoid, curved ventrad, relatively slender (7.8–8.3 times as long as wide) and long (1.8–2.2 times the cloacal body diameter), and with a rather narrow anterior part. Lateral guiding pieces 19–20 Μm long, 9–10 six times as long as wide. Other material examined (9 ♀♀ from three locations). These nine females are nearly identical to those of type population. They have slightly smaller general size, but largely overlap in their morphometric ranges. In many of these females the pars refringens vaginae is variably developed, often with weaker sclerotization than usual. It is also remarkable that no male has been collected together with the females and that these do not contain sperm cells. Diagnosis. The new species is characterized by its body length of 2.46–3.12 mm, lip region offset by constriction and 8–11 µm wide, odontostyle fusiform and 10–12 µm long, neck 773–1150 µm long, anterior portion of pharynx bearing a spindle-shaped thickening with valve-like structures inside, both parts of the pharynx separated by a short isthmus-like narrowing, pharyngeal expansion 531–825 µm long and occupying up to threefourths of total neck length, female genital system monodelphic-opisthodelphic, anterior genital branch reduced to a large uterine sac and a small terminal mass, posterior uterus long and tripartite with a intermediate region bearing apophyses, V = 53–57, caudal region conoid with broadly rounded terminus (24–35 µm, c = 79–105, c’ = 0.6–0.9), spicules 93–102 µm long and 7–10 spaced ventromedian supplements, at least two of them within the range of spicules. Relationships. In having comparatively large general size (body length more than 2 mm), echinophorous uterus (i.e., bearing abundant, refractive, spine-like elements or apophyses) and posterior vulva position (V more than 50), the new species is very similar to M. bihariense (Popovici, 1990) Andrássy, 1996, M. giennense Peña- Santiago & Coomans, 1990 and M. paravalvulatum Peña-Santiago & Coomans, 1990. It differs from M. bihariense in its wider lip region (8–11 vs 7–8 µm, n= 14 in Romanian material), longer neck (773–1000 vs 600–775 µm; b = 2.8–3.4 vs b = 3.2 –4.0), presence of a valvate swelling at the anterior section of pharynx (vs absent or overlooked), an isthmus-like narrowing separating both pharyngeal sections (vs apparently no special differentiation marking this separation), pars refringens vaginae readily perceptible (vs weakly sclerotized if present), and male known (vs unknown). From M. giennense in the presence (vs absence) of valves at the spindle-shaped swelling in the anterior slender portion of pharynx, larger spicules (93–102 vs 71–87 µm long, n= 9), and lower number of ventromedian supplements (7–10 vs 10–14) with different arrangement (two vs at least three of them within the spicules range, with the last two somewhat shifted from the midventral position, one on the left, the other on the right in M. giennense). And from M. paravalvulatum in its longer male tail (37–43 vs 30 µm), larger spicules (93–102 vs 71 µm long) with different shape (more slender and having a long slender anterior part vs more robust and lacking an especially narrow anterior part), and lower number of ventromedian supplements (7–10 vs 11) with different arrangement (two vs only one distinctly lying within the range of spicules). Type locality and habitat. The new species was collected from northwest Iran, Mahmood Abad region, East Azarbaijan province (GPS coordinates: N 38 ° 48 ′ 43.5 E 46 ° 51 59.6 ″), in Arasbaran rangelands, during 2012. Other localities and habitats. Dolat Abad district, Marand, in an orchard with fruit trees; Ass district, Arasbaran, in a natural pasture; and Hervi district, around Tabriz, in an orchard with fruit trees. Type material. Female holotype, two female and two male paratypes deposited in the Collection of Nematology Lab., University of Tabriz, Tabriz, Iran. Two female and one male paratypes deposited in the Nematode Collection of the University of Jaén, Spain. Etymology. The specific epithet refers to the geographical origin of this species in Persia, the former name of Iran. Remarks. Metaxonchium persicum sp. n. is morphometrically very similar to M. giennense and M. paravalvulatum, making the identification of their respective females especially problematic. Nevertheless, the morphology of the spicules and the number and arrangement of the ventromedian supplements seem to be sufficiently different to support a provisionally separate status for these three species. Holotype Paratypes Character n ♀ 5 ♀♀ 3 ♂♂ 4 ♀♀ 4 ♀♀ ♀ 15 ♀&female
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- 2014
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13. Side effects of immune response of Colorado potato beetle, Leptinotarsa decemlineata against the entomopathogenic nematode, Steinernema carpocapsae infection
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Laleh Ebrahimi, Niknam, G., Dunphy, G. B., and Toorchi, M.
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Leptinotarsa decemlineata ,animal structures ,Steinernema carpocapsae ,PO activity ,cuticular discoloration ,lcsh:Biology (General) ,fungi ,lcsh:QH301-705.5 - Abstract
Entomopathogenic nematodes (EPNs) are lethal pathogens of agricultural insect pests. Little is known about their sublethal effects on the insect hosts. The lethal effects of Steinernema carpocapsae on fourth instar larvae of Colorado potato beetle (CPB), Leptinotarsa decemlineata were detected using soil infection and direct injection of the nematode into the hemocel. LC20 and LC80 values of 7.8 (3.0 - 13.4) infective juveniles (IJs) and 126.7 (91-206.7) IJs were obtained for the soil application method and 10.2 (8.7 - 11.4) IJs and 22.7 (19.73 - 28.0) IJs for direct injection, respecitvely. Sublethal effects of S. carpocapsae on last instar larvae and subsequent surviving adults and phenoloxidase (PO) activity in hemolymph of nematode-injected last instar larvae were investigated. Sublethal effects included adult cuticular discoloration, deformation of the wings, legs and antenna and decreased fertilized egg production in females. Considering cuticular discoloration in most treated insects, it is hypothesized that production of PO in the insect larvae infected with an entomopathogenic nematode, S. carpocapsae might have costs for surviving adult insects. PO specific activity in CPB against S. carpocapsae generally increased up to 48 h post injection. Here in, the sublethal effects are discussed as a potential tread-offs of PO production in nematode-injected insects.
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- 2014
14. Metaxonchium persicum sp. n. from Iran (Nematoda, Dorylaimida, Belondiridae), with an updated taxonomy of the genus
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PEÑA-SANTIAGO, R., primary, NIKNAM, G., additional, ÁLVAREZ-ORTEGA, S., additional, and JABBARI, H., additional
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- 2014
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15. Hemocyte Responses of the Colorado Potato Beetle,Leptinotarsa decemlineata, and the Greater Wax Moth,Galleria mellonella, to the Entomopathogenic Nematodes,Steinernema feltiaeandHeterorhabditis bacteriophora
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Ebrahimi, L., primary, Niknam, G., additional, and Dunphy, G. B., additional
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- 2011
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16. Morphological and molecular characterization of Paractinolaimus sahandi n. sp. (Nematoda: Actinolaimidae) from the Sahand Mountains in Iran
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Pedram, M., primary, Niknam, G., additional, Vinciguerra, M.T., additional, Ye, W., additional, and Robbins, R.T., additional
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- 2010
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17. First Record of Trichodorus primitivus and Morphological and Molecular Identification of Longidorus elongatus from Canada
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Pedram, M., primary, Niknam, G., additional, Robbins, R. T., additional, Decraemer, W., additional, Ye, W., additional, and Yu, Q., additional
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- 2010
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18. Description of a new dagger nematode, Xiphinema barooghii n. sp. (Nematoda: Longidoridae) and additional data on the three known species of the genus from northwest of Iran
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Vazifeh Nasir, Niknam Gholamreza, Jabbari Habibeh, and Naghavi Arezoo
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d2–d3 of 28s rdna ,longidorids ,molecular analysis ,morphology ,morphometrics ,new species ,taxonomy ,xiphinema index ,x. pachtaicum and x. vuittenezi ,Biology (General) ,QH301-705.5 - Abstract
Xiphinema barooghii n. sp. collected from the rhizosphere of common wheat (Triticum aestivum L.) in Roodghat area, Sufiyan, East-Azarbaijan province, northwest of Iran, is described on the basis of the morphological, morphometric and molecular data. The new species belongs to morphospecies group 6 of the polytomous key prepared by Loof and Luc, 1990. Xiphinema barooghii n. sp. is characterized by having two almost equally developed female reproductive branches with spines in the tubular portion of the uterus, a body length of 3.67–4.25 mm, a flat lip region, rounded cephalic region, separated from body contour by a shallow depression, a spear 215–225 μm long, mid-body diameter of 60–79 μm, vulva (46–48%), a short tail (30–38 µm, c = 103–133, c′ = 0.7–0.9), conoid, dorsally convex, ventrally directed with a small terminal peg and a distinct terminal blind canal, the presence of four juvenile stages and the absence of males. The polytomous identification codes of the new species are: A4, B3, C5a, D6, E5, F4, G3, H2, I3, J4, K2, L1. In addition to morphological and morphometric data, molecular analyses of the D2–D3 expansion regions of the 28S rDNA gene placed the new species as a sister species of X. herakliense (Group 5) with 65% Bayesian posterior probability and further separated this species from the other members in group 6. In this study, X. index, X. pachtaicum and X. vuittenezi were also collected and additional data for the species were provided.
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- 2019
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19. An Investigation on Strains of Clavibacter michiganensis subsp. michiganensis in North and North West of Iran
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Nazari, F., primary, Niknam, G. R., additional, Ghasemi, A., additional, Taghavi, S. M., additional, Momeni, H., additional, and Torabi, S., additional
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- 2007
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20. Hemocyte responses of the Colorado potato beetle, Leptinotarsa decemlineata, and the greater wax moth, Galleria mellonella, to the entomopathogenic nematodes, Steinernema feltiae and Heterorhabditis bacteriophora.
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Ebrahimi, L., Niknam, G., and Dunphy, G. B.
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INSECTS , *INSECT nematodes , *STEINERNEMA feltiae , *HETERORHABDITIS , *COLORADO potato beetle , *GREATER wax moth , *CELLULAR immunity - Abstract
The article focuses on a research conducted in order to evaluate the interaction of the two Iranian isolates of entomopathogenic nematodes, Steinernema feltiae and Heterorhabditis bacteriophora with the Colorado potato beetle, Leptinotarsa decemlineata, and the greater wax moth, Galleria mellonella. The study revealed the selection of ntomopathogenicnematode species against significant economic pests based on the pest's cellular immune response.
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- 2011
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21. Temporal dynamics unleashed: Elevating variational graph attention.
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Molaei S, Niknam G, Ghosheh GO, Chauhan VK, Zare H, Zhu T, Pan S, and Clifton DA
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This research introduces the Variational Graph Attention Dynamics (VarGATDyn), addressing the complexities of dynamic graph representation learning, where existing models, tailored for static graphs, prove inadequate. VarGATDyn melds attention mechanisms with a Markovian assumption to surpass the challenges of maintaining temporal consistency and the extensive dataset requirements typical of RNN-based frameworks. It harnesses the strengths of the Variational Graph Auto-Encoder (VGAE) framework, Graph Attention Networks (GAT), and Gaussian Mixture Models (GMM) to adeptly navigate the temporal and structural intricacies of dynamic graphs. Through the strategic application of GMMs, the model handles multimodal patterns, thereby rectifying misalignments between prior and estimated posterior distributions. An innovative multiple-learning methodology bolsters the model's adaptability, leading to an encompassing and effective learning process. Empirical tests underscore VarGATDyn's dominance in dynamic link prediction across various datasets, highlighting its proficiency in capturing multimodal distributions and temporal dynamics., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors.)
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- 2024
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22. A new species of the genus Hexamermis Steiner, 1924 (Nematoda: Mermithidae) from northern Iran: a nematode with an unusual uterine morphology.
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Vazifeh N, Niknam G, Camino NB, and Abootalebi F
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- Female, Animals, Male, Iran, Phylogeny, Bayes Theorem, Uterus, Nematoda
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Hexamermis zirabi sp. n., recovered from a natural habitat of Mazandaran province, north of Iran, is described based on morphological and molecular data. The new species is characterized by its six cephalic papillae; cuticle with distinct cross fibers; conoid or sharply tapered head; mouth terminal; six hypodermal cords; J-shaped vagina oriented to the anterior end of body; uterus with Z-organs or sclerotized bodies; tail similar in both sexes and bluntly rounded; spicules paired, separate, slightly curved, shorter than body width at cloaca, with rounded tip; and male genital papillae arranged in five rows. In addition to the morphological study, molecular phylogenetic analyses using a partial large subunit (28S D2-D3) were also performed, and the new species formed a highly supported (1.00% Bayesian posterior probability (BPP)) clade with Hexamermis popilliae.
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- 2024
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23. DyVGRNN: DYnamic mixture Variational Graph Recurrent Neural Networks.
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Niknam G, Molaei S, Zare H, Pan S, Jalili M, Zhu T, and Clifton D
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- Cluster Analysis, Normal Distribution, Learning, Neural Networks, Computer
- Abstract
Although graph representation learning has been studied extensively in static graph settings, dynamic graphs are less investigated in this context. This paper proposes a novel integrated variational framework called DYnamic mixture Variational Graph Recurrent Neural Networks (DyVGRNN), which consists of extra latent random variables in structural and temporal modelling. Our proposed framework comprises an integration of Variational Graph Auto-Encoder (VGAE) and Graph Recurrent Neural Network (GRNN) by exploiting a novel attention mechanism. The Gaussian Mixture Model (GMM) and the VGAE framework are combined in DyVGRNN to model the multimodal nature of data, which enhances performance. To consider the significance of time steps, our proposed method incorporates an attention-based module. The experimental results demonstrate that our method greatly outperforms state-of-the-art dynamic graph representation learning methods in terms of link prediction and clustering.
2 ., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Ltd. All rights reserved.)- Published
- 2023
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24. A new species of Xiphinema americanum group (Nematoda: Longidoridae) from Iran, with additional data on three known species.
- Author
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Naghavi A, Niknam G, and Vazifeh N
- Subjects
- Animals, Iran, Male, Phylogeny, Rhizosphere, Species Specificity, Nematoda
- Abstract
One new and three known species of the genus Xiphinema from the rhizosphere of fruit trees and rose shrubs in East Azarbaijan province, Iran, are presented based on the morphological, morphometric and molecular characters. The new species is distinguished by its 2.0-2.1 mm long body, relatively flattened lip region with 8.7-10.0 µm width, set off from body contour by a deep constriction, odontostyle 82.5-88.0 µm long, V = 52-54, reproductive system didelphic-amphidelphic with symbiotic bacteria in the reflexed ovaries, tail conoid, dorsally convex with rounded to slightly subdigitate tip (42.0-43.5 µm long, c = 61-65, c' = 1.6-1.8), and males unknown. The new species, X. babaii sp. n., looks very close to X. californicum, and is regarded as its cryptic species, being separated from it using some morphological differences. Their separation was further corroborated using molecular data. Three known species belonging to the Xiphinema americanum group namely X. primum, X. pachtaicum and X. simile were also collected during present study, and new data were provided for them. Xiphinema simile is a new record for the Iran's nematode fauna. Molecular phylogenetic studies using partial sequences of 28S rRNA gene D2-D3 fragments were performed, and the phylogenetic relationships of the new species were discussed., (© 2022. The Author(s), under exclusive licence to Springer Nature B.V.)
- Published
- 2022
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25. New insights into the identity of Discolaimium dubium Das, Khan and Loof, 1969 (Dorylaimida) as derived from its morphological and molecular characterization, with the proposal of its transference to Aporcella Andrássy, 2002.
- Author
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Vazifeh N, Niknam G, Jabbari H, Naghavi A, and Peña-Santiago R
- Abstract
Three Iranian populations of Discolaimium dubium are studied, including their morphological and morphometric characterization, molecular analysis (LSU-rDNA) and the description of the male for the first time. For comparative purposes, this species is distinguished by its 1.10 to 1.40 mm long body, lip region offset by constriction and 8 to 10 µm wide, odontostyle 7.5 to 10.5 µm long with aperture occupying 59 to 76% of total length, neck 300 to 362 µm, pharyngeal expansion 127 to 181 µm long or 44 to 46% of the total neck length, uterus simple and 38 to 53 µm or 1.2 to 1.5 times the body diameter long, V = 52 to 58, tail conical (32-38 µm, c = 32-43, c' = 1.6-2.0) with rounded tip and a hyaline portion occupying 14 to 15% of tail length, spicules 30 to 32 µm long, and two or three widely space ventromedian supplements with hiatus. Both morphological and molecular data support its belonging to the genus Aporcella , whose monophyly is confirmed and to which the species is formally transferred as A. dubia (Das et al., 1969) comb. n., (© 2021 Authors.)
- Published
- 2021
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26. Morphological and molecular characterization of Pungentus sufiyanensis n. sp. and additional data on P. engadinensis (Altherr, 1950) Altherr, 1952 (Dorylaimida: Nordiidae) from northwest of Iran.
- Author
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Vazifeh N, Niknam G, Jabbari H, and Peña-Santiago R
- Abstract
Two species of the genus Pungentus , one new and one known, collected in natural vegetation and cultivated soils in northwest of Iran, are studied. Pungentus sufiyanensis n. sp. is characterized by its 1.22 to 1.57 mm long body, offset lip region by a constriction and 7 to 9 μm broad, 18 to 21 μm long odontostyle, 304 to 348 μm long neck, 133 to 161 μm long esophageal expansion, mono - opisthodelphic female genital system without anterior uterine sac, slightly backward directed vagina, absence of pars refringens vaginae , V = 47 - 54, rounded-conoid caudal region (17.5-23 μm, c = 65-84, c ´ = 0.7-1) with saccate bodies, and the absence of male. Molecular analysis, based on D2-D3 expansion segments of the 28S rDNA (LSU), confirms the monophyly of the family Nordiidae and suggests the monophyly of the genus Pungentus , with the new species forming a clade with other Iranian species. New data are presented for six Iranian populations of P. engadinensis , and an updated key for the identification of Pungentus species is also provided., Two species of the genus Pungentus , one new and one known, collected in natural vegetation and cultivated soils in northwest of Iran, are studied. Pungentus sufiyanensis n. sp. is characterized by its 1.22 to 1.57 mm long body, offset lip region by a constriction and 7 to 9 μm broad, 18 to 21 μm long odontostyle, 304 to 348 μm long neck, 133 to 161 μm long esophageal expansion, mono - opisthodelphic female genital system without anterior uterine sac, slightly backward directed vagina, absence of pars refringens vaginae , V = 47 − 54, rounded-conoid caudal region (17.5–23 μm, c = 65–84, c ´ = 0.7–1) with saccate bodies, and the absence of male. Molecular analysis, based on D2-D3 expansion segments of the 28S rDNA (LSU), confirms the monophyly of the family Nordiidae and suggests the monophyly of the genus Pungentus , with the new species forming a clade with other Iranian species. New data are presented for six Iranian populations of P. engadinensis , and an updated key for the identification of Pungentus species is also provided.
- Published
- 2020
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27. Two new species of the rare genus Nygolaimoides Meyl in Andrássy, 1960 (Nematoda, Dorylaimida, Thorniidae) from Iran, with a compendium of its species.
- Author
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Asl EZ, Niknam G, Jabbari H, and Pena-Santiago R
- Subjects
- Animals, Female, Iran, Male, Nematoda anatomy & histology, Nematoda classification
- Abstract
Two new Nygolaimoides species are described and illustrated from soil and stumps of an old nursery of Populus alba, Miandoab County, West Azarbaijan province, Iran. Nygolaimoides zarrinensis sp. n. is characterized by its 0.73-0.94 mm long body, lip region 9.5-10.5 µm broad, odontostyle 9.5-11.0 µm long, neck length 162-194 µm long, pharyngeal expansion 78-83 µm long, V = 46-50, female tail short and rounded conoid (11-15 µm, c = 63-84, c' = 0.7-0.9), male tail rounded conoid (14-18 µm, c = 43-55, c' = 0.9-1.1), spicules 21-25 µm long and with irregular head, and two ventromedian supplements bearing hiatus. Nygolaimoides albus sp. n. is distinguished by its 0.64-0.95 mm long body, lip region 8-10 µm broad, odontostyle 9.5-11.0 µm long, neck length 164-200 µm long, pharyngeal expansion 66-72 µm long, V = 43-51, female tail hemispheroid (4.0-5.5 µm, c = 120-233, c' = 0.4-0.7), male tail conoid (9.0-12.0 µm, c = 58-78, c' = 0.7-1.0), spicules 13-17 µm long, and two ventromedian supplements bearing hiatus. SEM observations have been made for the first time for representatives of this genus. The taxonomy of the genus is updated with a list of its species, a key to their identification and a table-compendium of relevant morphometrics.
- Published
- 2016
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28. Margollus bokanicus n. sp. from Iran, the Fourth Species of a Rare Nematode Genus (Dorylaimida, Tylencholaimellidae).
- Author
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Pachideh A, Niknam G, Jabbari H, and Peña-Santiago R
- Abstract
Margollus bokanicus n. sp., collected from natural habitats in Khorasaneh district, Bokan, West Azarbaijan province, Iran, is described. Morphological and morphometric data are provided as well as drawings and light microscopy illustrations. The new species is characterized by a medium size body length (0.60 to 0.73 mm), labial and postlabial sclerotizations, lip region 7-μm wide, offset by constriction and long neck (167 to 207 μm), long pharyngeal basal bulb (27 to 36 μm) or 16% to 17% of total neck length, female genital system monodelphic-opisthodelphic, anterior branch reduced to a uterine sac (26-29 μm) or 1.1 to 1.3 times the body diameter, long posterior uterus (25-28 μm) or 1.1 to 1.3 times the body diameter, V = 40 to 47, cylindroid female tail (17 to 24 μm, c = 31 to 38, c' = 1.1 to 1.4), and males unknown. This taxon is easily distinguishable from other Margollus species by its smaller general size and more posterior vulva. A compendium of Margollus species is also presented.
- Published
- 2015
29. An updated and annotated checklist of the Dolichodoridae (Nematoda: Tylenchoidea) of Iran.
- Author
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Ghaderi R, Karegar A, and Niknam G
- Subjects
- Animal Distribution, Animal Structures anatomy & histology, Animals, Checklist, Ecosystem, Female, Iran, Male, Tylenchoidea anatomy & histology, Tylenchoidea classification
- Abstract
The list of plant parasitic nematodes of the family Dolichodoridae, known from Iran, is updated. 81 species belonging to 13 genera and three subfamilies are included in the list. Data for 29 species are added, of which seven species viz. Neodolichorhynchus phaseoli, Pratylenchoides crenicauda, P. erzurumensis, P. utahensis, Scutylenchus paniculoides, Trophurus impar and Tylenchorhynchus variannus are new records for the Iranian nematofauna. The list of species, further information on their morphometrics, references, referring to full or partial descriptions, associated plants, geographical distribution and some taxonomic remarks are provided. More detailed studies on some doubtful populations are proposed. The information on the taxonomic position of species in different classification schemes, as well as, the tendency of the species to certain climatic condition or ecological niche are provided. Challenges on the reliable identification of this group of nematodes in Iran are discussed and finally, suggestions were proposed for future studies.
- Published
- 2014
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30. Description of Crassolabium persicum sp. n. (Nematoda, Dorylaimida, Qudsianematidae), an interesting species from Iran.
- Author
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Jabbari H, Niknam G, Vinciguerra MT, Shalaleh Moslehi, Abolafia J, and Peña-Santiago R
- Abstract
A new species of the genus Crassolabium, Crassolabium persicumsp. n., collected from Arasbaran rangelands of Iran, is described and illustrated. It is characterized by its body 1.92-2.40 mm long, lip region offset by constriction and 17-19 μm wide, odontostyle 16-19 μm long with aperture occupying less than one-third (27-30%) its length, neck 428-690 μm long, pharyngeal expansion 369-390 μm long or occupying 54-56% of total neck length, female genital system amphidelphic, uterus bipartite and 162-218 μm long or 2.3-3.5 times as long as body diameter, pars refringens vaginae well developed, V = 54-57.5, vulva longitudinal, prerectum bearing a blind sac, tail conical with rounded tip to conoid (25-36 μm, c=60-69, c'=0.5-0.9), spicules 68-72 μm long, precloacal pair of supplements far (22-27 μm) from cloacal aperture, and 13-17 shortly spaced ventromedian supplements with hiatus. The new taxon is compared in depth to its relatives in Crassolabium as well as other similar species of Aporcelaimellus and Amblydorylaimus.
- Published
- 2012
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31. Morphological and molecular characterization of Paractinolaimus sahandi n. sp. (Nematoda: Actinolaimidae) from the Sahand Mountains in Iran.
- Author
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Pedram M, Niknam G, Vinciguerra MT, Ye W, and Robbins RT
- Subjects
- Animal Structures anatomy & histology, Animals, Cluster Analysis, DNA, Helminth chemistry, DNA, Helminth genetics, DNA, Ribosomal chemistry, DNA, Ribosomal genetics, DNA, Ribosomal Spacer chemistry, DNA, Ribosomal Spacer genetics, Female, Iran, Male, Microscopy, Molecular Sequence Data, Nematoda classification, Nematoda isolation & purification, Phylogeny, Poaceae, RNA, Ribosomal, 18S genetics, RNA, Ribosomal, 28S genetics, Sequence Analysis, DNA, Nematoda anatomy & histology, Nematoda genetics, Rhizosphere, Soil Microbiology
- Abstract
Paractinolaimus sahandi n. sp., found in wet soil samples collected from the rhizosphere of grasses of Sahand Mountains, Iran, is described. This new species is characterized by its long body (3.5-4.7 mm), high a value (74.5-88.5), anterior location of posterior subventral nuclei, occupying 62.5-68.0% of glandularium distance, the presence of 1-4 pre- and 1-3 post-vulval papillae and numerous tiny, not innervated papillae in front and behind the vulva in the outer layer of cuticle; common functional males in the population, with 62.5-81.3 μm long spicules and 15-17 ventromedian supplements. The new species, which is the only one in the genus showing the advulval cuticular tiny papillae and is unusually slender, is compared to four species of Paractinolaimus, namely P. macrolaimus, P. longidrilus, P. spanithelus and P. rafiqi. The ribosomal 18S rDNA (1246 bp sequenced) and 28S rDNA D2/D3 region (844 bp sequenced) of P. sahandi n. sp. were sequenced for molecular characterization. Sequences of the 18S and 28S D2/D3 of P. sahandi n. sp. have distinct differences from those of the only sequenced P. macrolaimus, with 6 bp differences in 18S and 38 bp differences and five gaps in 28S. This is the first report of the occurrence of members of Actinolaimidae in Iran.
- Published
- 2011
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32. Longidorus kheirii n. sp. (Nematoda: Longidoridae) from Iran.
- Author
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Pedram M, Niknam G, Robbins RT, Ye W, and Karegar A
- Subjects
- Animals, DNA, Helminth, DNA, Ribosomal Spacer analysis, Female, Genes, rRNA, Iran, Male, Molecular Sequence Data, Nematoda anatomy & histology, Nematoda genetics, Nematoda isolation & purification, Phylogeny, RNA, Ribosomal, 18S genetics, Sequence Analysis, DNA, Species Specificity, Nematoda classification, Plant Roots parasitology, Rosa parasitology, Soil parasitology
- Abstract
Longidorus kheirii n. sp., a parthenogenetic species, was found in soil samples collected from the rhizosphere of Rosa sp. growing in a natural mountainous region close to Maragheh city, northwestern Iran. It is characterised by having a long body (6.7-9 mm), a 19.5-23 mum wide head continuous with the body contour, a truncate and slightly concave lip region with convex sides between the anterior end and the guide-ring, an odontostyle 113-130 mum long, an odontophore 69-97.5 mum long, a body width of 90.5-117.5 mum at the mid-body, a long, wide oesophageal bulb (149.5-193.5 x 39.5-48 mum), a tail length of 47-72 mum, a male with 11 ventromedian supplements and spicules of 85 mum in length, and four juvenile stages. The ribosomal 18S rDNA gene of L. kheirii n. sp., L. leptocephalus Hooper, 1961, L. profundorum Hooper, 1966 L. euonymus Mali & Hooper, 1973 and two unidentified species listed as Longidorus sp. 1 and Longidorus sp. 2, all recovered from northwestern Iran in the same survey, and the ITS1 of L. kheirii n. sp. and Longidorus sp. 1 were sequenced in order to investigate the phylogenetic relationships with other previously sequenced Longidorus species.
- Published
- 2008
- Full Text
- View/download PDF
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