984 results on '"Nikoloski, Zoran"'
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2. Comparative analysis of metabolic models of microbial communities reconstructed from automated tools and consensus approaches
3. The genome of Haberlea rhodopensis provides insights into the mechanisms for tolerance to multiple extreme environments
4. Comprehensive profiles of sulfur cycling microbial communities along a mangrove sediment depth
5. Proteomics and constraint-based modelling reveal enzyme kinetic properties of Chlamydomonas reinhardtii on a genome scale
6. Growth in fluctuating light buffers plants against photorespiratory perturbations
7. The effective deficiency of biochemical networks
8. Identification of gene function based on models capturing natural variability of Arabidopsis thaliana lipid metabolism
9. Data integration across conditions improves turnover number estimates and metabolic predictions
10. Widening the landscape of transcriptional regulation of green algal photoprotection
11. Light-independent regulation of algal photoprotection by CO2 availability
12. The unraveling of balanced complexes in metabolic networks
13. Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses
14. Prediction and integration of metabolite-protein interactions with genome-scale metabolic models
15. Accurate prediction of in vivo protein abundances by coupling constraint-based modelling and machine learning
16. Model-driven insights into the effects of temperature on metabolism
17. Optogenetic control of Cdc48 for dynamic metabolic engineering in yeast
18. CUBCO: Prediction of Protein Complexes Based on Min-cut Network Partitioning into Biclique Spanned Subgraphs
19. Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom.
20. Tracing and tracking filamentous structures across scales: A systematic review
21. Temperature-mediated flower size plasticity in Arabidopsis
22. Carbon flux through photosynthesis and central carbon metabolism show distinct patterns between algae, C3 and C4 plants
23. Relative flux trade-offs and optimization of metabolic network functionalities
24. Computational identification of protein complexes from network interactions: Present state, challenges, and the way forward
25. On the effects of alternative optima in context-specific metabolic model predictions
26. Integration of large-scale data for extraction of integrated Arabidopsis root cell-type specific models
27. CUBCO: Prediction of Protein Complexes Based on Min-cut Network Partitioning into Biclique Spanned Subgraphs
28. Nonlinear models based on leaf architecture traits explain the variability of mesophyll conductance across plant species
29. Phototropin connects blue light perception to starch metabolism in green algae
30. Harnessing the optimization of enzyme catalytic rates in engineering of metabolic phenotypes
31. A Robust Network-based Spatiotemporal Analysis of Filamentous Structures
32. Editorial: Isotopic labeling approaches for exploring plant metabolism dynamics
33. Protein constraints in genome‐scale metabolic models: Data integration, parameter estimation, and prediction of metabolic phenotypes
34. Cytochrome respiration pathway and sulphur metabolism sustain stress tolerance to low temperature in the Antarctic species Colobanthus quitensis
35. DeFiNe: an optimisation-based method for robust disentangling of filamentous networks
36. Efficient and accurate identification of protein complexes from protein-protein interaction networks based on the clustering coefficient
37. Combination of network and molecule structure accurately predicts competitive inhibitory interactions
38. Characterization of effects of genetic variants via genome-scale metabolic modelling
39. Observability of Plant Metabolic Networks Is Reflected in the Correlation of Metabolic Profiles
40. Control principles of metabolic networks
41. Quantitative analyses of the plant cytoskeleton reveal underlying organizational principles
42. img2net: Automated network-based analysis of imaged phenotypes
43. Strategies to identify and dissect trade‐offs in plants.
44. Models and molecular mechanisms for trade‐offs in the context of metabolism.
45. A simulation-free constrained regression approach for flux estimation in isotopically nonstationary metabolic flux analysis with applications in microalgae
46. Histone retention preserves epigenetic marks during heat stress‐induced transcriptional memory in plants
47. PARROT: Prediction of enzyme abundances using protein-constrained metabolic models
48. Integration of relative metabolomics and transcriptomics time-course data in a metabolic model pinpoints effects of ribosome biogenesis defects on Arabidopsis thaliana metabolism
49. A structural property for reduction of biochemical networks
50. A network-based framework for shape analysis enables accurate characterization of leaf epidermal cells
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