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2. Genomic reconstruction of the SARS-CoV-2 epidemic in England

3. Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7

4. Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes

6. Microbiomes of Urine and the Prostate Are Linked to Human Prostate Cancer Risk Groups

8. Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study

9. Genomic epidemiology and the role of international and regional travel in the SARS-CoV-2 epidemic in Zimbabwe: a retrospective study of routinely collected surveillance data

10. A pragmatic pipeline for drug resistance identification in Mycobacterium tuberculosis using whole genome sequencing

11. The impact of viral mutations on recognition by SARS-CoV-2 specific T cells

12. Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B.1.1.7: an ecological study

13. An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities

15. Evaluating the potential for respiratory metagenomics to improve treatment of secondary infection and detection of nosocomial transmission on expanded COVID-19 intensive care units

16. CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes

18. Routine Metagenomics Service for Intensive Care Unit Patients with Respiratory Infection

23. Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes

24. Determination and quantification of microbial communities and antimicrobial resistance on food through host DNA-depleted metagenomics

28. Clinical Performance of Direct RT-PCR Testing of Raw Saliva for Detection of SARS-CoV-2 in Symptomatic and Asymptomatic Individuals

30. Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission

32. COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: a prospective observational cohort study

33. Determination and quantification of microbial communities and antimicrobial resistance on food through host DNA-depleted metagenomics

34. Dynamics of Salmonella enterica and antimicrobial resistance in the Brazilian poultry industry and global impacts on public health

35. Assessment of the Xpert MTB/RIF assay for diagnosis of tuberculosis with gastric lavage aspirates in children in sub-Saharan Africa: a prospective descriptive study

37. Tuberculosis Diagnostics and Biomarkers: Needs, Challenges, Recent Advances, and Opportunities

39. Drug-Resistant Tuberculosis—Current Dilemmas, Unanswered Questions, Challenges, and Priority Needs

40. Clinical Metagenomic Sequencing for Species Identification and Antimicrobial Resistance Prediction in Orthopedic Device Infection

41. The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

42. Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission

43. The role of viral genomics in understanding COVID-19 outbreaks in long-term care facilities

44. Multicentre evaluation of two multiplex PCR platforms for the rapid microbiologicalinvestigation of nosocomial pneumonia in UK ICUs: the INHALE WP1 study

46. The role of viral genomics in understanding COVID-19 outbreaks in long-term care facilities

47. Multicentre evaluation of two multiplex PCR platforms for the rapid microbiological investigation of nosocomial pneumonia in UK ICUs: the INHALE WP1 study

48. Novel, Rapid Metagenomic Method to Detect Emerging Viral Pathogens Applied to Human Monkeypox Infections

49. Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study

50. A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa

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