1. Transcriptional programming of CD4+ TRM differentiation in viral infection balances effector- and memory-associated gene expression
- Author
-
Nguyen, Quynh P, Takehara, Kennidy K, Deng, Tianda Z, O'Shea, Shannon, Heeg, Maximilian, Omilusik, Kyla D, Milner, J Justin, Quon, Sara, Pipkin, Matthew E, Choi, Jinyong, Crotty, Shane, and Goldrath, Ananda W
- Subjects
Biomedical and Clinical Sciences ,Immunology ,Genetics ,Prevention ,Infectious Diseases ,HIV/AIDS ,Underpinning research ,1.1 Normal biological development and functioning ,Humans ,Immunologic Memory ,Virus Diseases ,CD4-Positive T-Lymphocytes ,Cell Differentiation ,Gene Expression ,Clinical sciences - Abstract
After resolution of infection, T cells differentiate into long-lived memory cells that recirculate through secondary lymphoid organs or establish residence in tissues. In contrast to CD8+ tissue-resident memory T cells (TRM), the developmental origins and transcriptional regulation of CD4+ TRM remain largely undefined. Here, we investigated the phenotypic, functional, and transcriptional profiles of CD4+ TRM in the small intestine (SI) responding to acute viral infection, revealing a shared gene expression program and chromatin accessibility profile with circulating TH1 and the progressive acquisition of a mature TRM program. Single-cell RNA sequencing identified heterogeneity among established CD4+ TRM, which were predominantly located in the lamina propria, and revealed a population of cells that coexpressed both effector- and memory-associated genes, including the transcriptional regulators Blimp1, Id2, and Bcl6. TH1-associated Blimp1 and Id2 and TFH-associated Bcl6 were required for early TRM formation and development of a mature TRM population in the SI. These results demonstrate a developmental relationship between TH1 effector cells and the establishment of early TRM, as well as highlighted differences in CD4+ versus CD8+ TRM populations, providing insights into the mechanisms underlying the origins, differentiation, and persistence of CD4+ TRM in response to viral infection.
- Published
- 2023