1. Ancient Jomon genome sequence analysis sheds light on migration patterns of early East Asian populations
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Thorfinn Sand Korneliussen, Minoru Yoneda, Tsunehiko Hanihara, Takehiro Sato, Nobuo Shigehara, Martin Sikora, Tadayuki Masuyama, Yasuhiro Yamada, Ryosuke Kimura, Tetsuaki Wakebe, Hiroki Shibata, Osamu Kondo, Shigeki Nakagome, Takashi Gakuhari, Hiroki Oota, Kae Koganebuchi, Blánaid Ní Chuinneagáin, Atsushi Toyoda, Simon Rasmussen, Hiromi Shitara, Ryan Schmidt, Eske Willerslev, Toshiyuki Tsurumoto, Morten E. Allentoft, Souichiro Mizushima, Atsushi Tajima, Hajime Ishida, Hiromi Matsumae, Gakuhari, Takashi [0000-0003-1855-8371], Nakagome, Shigeki [0000-0001-9613-975X], Sato, Takehiro [0000-0001-9866-0346], Matsumae, Hiromi [0000-0003-1858-3833], Kondo, Osamu [0000-0001-9729-1446], Kimura, Ryosuke [0000-0003-0100-273X], Ishida, Hajime [0000-0002-5781-7914], Yamada, Yasuhiro [0000-0003-4686-7243], Tajima, Atsushi [0000-0001-6808-5491], Toyoda, Atsushi [0000-0002-0728-7548], Willerslev, Eske [0000-0002-7081-6748], Sikora, Martin [0000-0003-2818-8319], Oota, Hiroki [0000-0003-0746-2729], and Apollo - University of Cambridge Repository
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OKHOTSK PEOPLE ,JAPANESE ,Population genetics ,Statistics as Topic ,Medicine (miscellaneous) ,Evolutionary biology ,631/208/457 ,Sequence (geology) ,0302 clinical medicine ,HISTORY ,lcsh:QH301-705.5 ,631/208/182 ,0303 health sciences ,Phylogenetic tree ,Human migration ,Asia, Eastern ,article ,Geography ,Archaeology ,631/181/19 ,HUMAN GENETIC DIVERSITY ,NONMETRIC CRANIAL VARIATION ,General Agricultural and Biological Sciences ,NEANDERTHAL ,geographic locations ,Human Migration ,MITOCHONDRIAL-DNA ANALYSIS ,AINU ,Genomics ,General Biochemistry, Genetics and Molecular Biology ,Indigenous ,Evolutionary genetics ,631/181/27 ,03 medical and health sciences ,Asian People ,Humans ,East Asia ,DNA, Ancient ,030304 developmental biology ,Base Sequence ,business.industry ,Genome, Human ,Sequence Analysis, DNA ,TIANYUAN CAVE ,lcsh:Biology (General) ,631/181/2474 ,Anthropology ,ORIGINS ,Biological dispersal ,business ,Far East ,030217 neurology & neurosurgery - Abstract
Funder: The excavation of the Ikawazu Jomon individual was supported by Grant-in-Aid for Scientific Research (B) (25284157) to YY. The Ikawazu Jomon genome project was organized by HI, and TH & HO who were supported by MEXT KAKENHI Grant Numbers 16H06408 and 17H05132, by Grant-in-Aid for Scientific Research on Innovative Areas (Cultural History of Paleoasia), and by Grant-in-Aid for Challenging Exploratory Research (23657167) and for Scientific Research (B) (17H03738). The Ikawazu Jomon genome sequencing was supported by JSPS KAKENHI Grant Number 16H06279 to ATo, and partly supported in the CHOZEN project in Kanazawa University, and in the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University. Computations for the Ikawazu Jomon genome were partially performed on the NIG supercomputer at ROIS National Institute of Genetics., Anatomically modern humans reached East Asia more than 40,000 years ago. However, key questions still remain unanswered with regard to the route(s) and the number of wave(s) in the dispersal into East Eurasia. Ancient genomes at the edge of the region may elucidate a more detailed picture of the peopling of East Eurasia. Here, we analyze the whole-genome sequence of a 2,500-year-old individual (IK002) from the main-island of Japan that is characterized with a typical Jomon culture. The phylogenetic analyses support multiple waves of migration, with IK002 forming a basal lineage to the East and Northeast Asian genomes examined, likely representing some of the earliest-wave migrants who went north from Southeast Asia to East Asia. Furthermore, IK002 shows strong genetic affinity with the indigenous Taiwan aborigines, which may support a coastal route of the Jomon-ancestry migration. This study highlights the power of ancient genomics to provide new insights into the complex history of human migration into East Eurasia.
- Published
- 2020
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