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To assess vespicochory in Aristolochia (Aristolochiaceae), we conducted preliminary observations of Aristolochia shimadae under cultivation and in its natural habitat. Two paper wasp species (Polistes spp.) were observed visiting freshly dehisced capsules of cultivated plants of A. shimadae. After removing the seed from the capsule and licking the juicy and sticky substance surrounding it, paper wasps bit off and carried away only a part of the raphe. This behavior suggests that the capsule, including the substance surrounding the seeds, is attractive to them, and the raphe is equivalent to an elaiosome. In our field observations of A. shimadae in a natural habitat, a wasp (Vespula shidai) carried away a seed after licking the juicy and sticky substance surrounding it. This observation of vespicochory is the first report on A. shimadae and the first on angiosperms in Japan. [ABSTRACT FROM AUTHOR]

Explaining how plants from eastern Asia migrated to other Northern Hemisphere regions is still challenging. The genus Sorbus sensu stricto (including c . 88 species) is considered as a good example to illuminate this scenario, due to the wide distribution in the temperate zone and high diversity in the Himalayas and Hengduan Mountains. Based on four nuclear markers ( LEAFY -2, GBSSI -1, SBEI and WD ) and one chloroplast marker ( rps16 - trnK ), we reconstructed the phylogenetic relationship of Sorbus using 54 taxa (60% of the genus representing all subgenera, sections, or series and geographical areas in the previous classifications), and estimated divergence time and historical biogeography of the genus. Phylogenetic analyses supported that the subgenera Sorbus and Albo - carmesinae , as defined by traditional morphological characters (such as fruit color), are suitable. However, five clades defined by phylogenetic analysis of the genus are not consistent with traditionally defined sections or series. Molecular dating and biogeographic reconstruction showed that the age of the most recent common ancestor was estimated at 41 mya (95% HPD: 49–35 mya) in eastern Asia. Four dispersal events are assumed to explain the wide distribution of Sorbus in the temperate zone and diversification in the edges of Qinghai-Tibet Plateau (QTP). Species dispersed from eastern Asia to the Tianshan Mountains, North America and Europe during the Oligocene and Miocene period. We found that polyploidization occurred multiple times in the subgenus Albo - carmesinae , in the Tianshan Mountains, Himalayas, and H-D Mountains. Finally, we suggest that apomixis, polyploidization, and hybridization may have combined with the multistage uplifting of Himalayas and H-D Mountains (and the subsequent increases in geologic, ecological and climatic heterogeneity) to drive the striking species diversity of Sorbus in this region. [ABSTRACT FROM AUTHOR]

Arisaema has a long and complicated taxonomic history regarding its infrageneric classification. In the latest system, 14 sections were recognized, based on an unpublished, tentative phylogenetic analysis; in addition the type species and nomenclatural priority for each section were confirmed. Here, we present an updated, genus-wide phylogenetic analysis, based on four plastid non-coding regions (3 ′trnL- trnF, rpl20-5 ′rps12, psbB- psbH and rpoC2- rps2) for > 150 accessions. The maximum parsimony and maximum likelihood phylogenetic analyses identified eight major clades and one branch with unique sequence variation, although the relationships were unclear due to a polytomy and weak support. In the phylogenetic trees, most of the sections proposed in the latest system were distinct and corresponded to the major clades, but some sections are not monophyletic. On the basis of the phylogenetic relationship: (1) A. schimperianum is treated as a member of section Arisaema, rather than section Tenuipistillata or section Sinarisaema; and (2) section Fimbriata, which was synonymised into section Attenuata in the latest system but is morphologically distinct from the other species, is redefined as a monotypic section. In conclusion, we recognize 15 sections of Arisaema and species-level classifications are discussed in a phylogenetic context. [ABSTRACT FROM AUTHOR]

Recent molecular phylogenetic studies reported high diversity of Ruppia species in the Mediterranean. Multiple taxa, including apparent endemics, are known from that region, however, they have thus far not been exposed to phylogenetic analyses aimed at studying their relationships to taxa from other parts of the world. Here we present a comprehensive phylogenetic analyses of the R. maritima complex using data sets composed of DNA sequences of the plastid genome, the multi-copy nuclear ITS region, and the low-copy nuclear phyB gene with a primary focus on the Mediterranean representatives of the complex. As a result, a new lineage, 'Drepanensis', was identified as the seventh entity of the complex. This lineage is endemic to the Mediterranean. The accessions included in the former 'Tetraploid' entity were reclassified into two entities: an Asia-Australia-Europe disjunct 'Tetraploid_α' with a paternal 'Diploid' origin, and a European 'Tetraploid_γ' originating from a maternal 'Drepanensis' lineage. Another entity, 'Tetraploid_β', is likely to have been originated as a result of chloroplast capture through backcrossing hybridization between paternal 'Tetraploid_α' and maternal 'Tetraploid_γ'. Additional discovery of multiple tetraploidizations as well as hybridization and chloroplast capture at the tetraploid level indicated that hybridization has been a significant factor in the diversification of Ruppia. [ABSTRACT FROM AUTHOR]

• Premise of the study: The monogeneric family Ruppiaceae is found primarily in brackish water and is widely on all continents, many islands, and from subartic to tropical zones. Ruppia taxonomy has been confusing because of its simplified morphology yet high phenotypic plasticity and the existence of polyploidy and putative hybrids. This study addresses the current classification of species in the genus, the origin of putative hybrids and polyploids, and the distribution of Ruppia species. • Methods: Separate molecular phylogenetic analyses using plastid DNA and nuclear-encoded PHYB data sets were performed after chromosome observations. • Key results: The resultant trees were largely congruent between genomes, but were incongruent in two respects: the first incongruence may be caused by long outgroup branches and their effect on ingroup rooting, and the second is caused by the existence of heterogeneous PHYB sequences for several accessions that may reflect several independent hybridization events. Several morphological species recognized in previous taxonomic revisions appear paraphyletic in plastid DNA and PHYB trees. • Conclusions: Given the molecular phylogenies, and considering chromosome number and morphology, three species and one species complex comprising six lineages were discerned. A putative allotriploid, an allotetraploid, and a lineage of hybrid origin were identified within the species complex, and a hybrid was found outside the species complex, and their respective putarive parental taxa were inferred. With respect to biogeography, a remarkably discontinuous distribution was identified in two cases, for which bird-mediated seed dispersal may be a reasonable explanation. [ABSTRACT FROM AUTHOR]

The article offers information on a study which assessed the relationships among the five sections of Typhonium sensu lato and its allied genera. A background on the plant genus Typhonium is offered. The phylogenetic relationships of Typhonium were analyzed using the combined DNA sequences of six chloroplast regions. Findings of the study suggest that Typhonium is not a monophyletic group and that Typhonium sensu lato may be subdivided into several monophyletic groups.

Hybridization via distributional changes should be an important factor for plant speciation. Previous cpDNA analyses of the Aristolochia kaempferi group, comprising six taxa in East Asia, showed a distinct phylogeographic structure resulting from distributional changes brought about by paleoclimatic oscillations. However, the cpDNA phylogeny was incongruent with morphologically defined taxa. To explore the evolutionary processes responsible for the inconsistency between cpDNA and morphology, we made artificial crosses and performed phylogenetic analyses using multiple nuclear markers. All crosses among different taxa or cpDNA clades set fruit, if crossing direction is not considered. The five nuclear phylogenies mostly did not support either the taxa or the cpDNA clades. A combined analysis of cpDNA and the P1 exon revealed the two major lineages in the group, lacking a prezygotic isolating barrier between them. However, an asymmetric prezygotic isolating barrier occurs between populations of the Japanese main islands and of other areas that belong to different cpDNA subclades. It seems reasonable to conclude that the development of a prezygotic isolating mechanism is not necessarily proportional to the degree of genetic divergence. These results suggested that species boundaries within the group are blurred due to speciational processes associated with multiple hybridization and introgression resulting from repeated contacts among differentiated populations. [ABSTRACT FROM AUTHOR]

Two woodyHibiscusspecies co-occur in the Bonin Islands of the northwestern Pacific Ocean:Hibiscus glaberMatsum. is endemic to the islands, and its putative ancestral species,Hibiscus tiliaceusL., is widely distributed in coastal areas of the tropics and subtropics. To infer isolating mechanisms that led to speciation ofH. glaberand the processes that resulted in co-occurrence of the two closely related species on the Bonin Islands, we conducted molecular phylogenetic analyses on chloroplast DNA (cpDNA) sequences. Materials collected from a wide area of the Pacific and Indian Oceans were used, and two closely related species,Hibiscus hamaboSiebold Zucc. andHibiscus macrophyllusRoxb., were also included in the analyses. The constructed tree suggested thatH. glaberhas been derived fromH. tiliaceus,and that most of the modern Bonin populations ofH. tiliaceusdid not share most recent ancestry withH. glaber.Geographic isolation appears to be the most important mechanism in the speciation ofH. glaber.The co-occurrence of the two species can be attributed to multiple migrations of different lineages into the islands. While a wide and overlapping geographical distribution of haplotypes was found inH. tiliaceus, localized geographical distribution of haplotypes was detected inH. glaber. It is hypothesized that a shift to inland habitats may have affected the mode of seed dispersal from ocean currents to gravity and hence resulted in geographical structuring ofH. glaberhaplotypes. [ABSTRACT FROM AUTHOR]

Species delimitation has long been a subject of controversy, and there are many alternative concepts and approaches used to define species in plants. The genus Amana (Liliaceae), known as "East Asian tulips" has a number of cryptic species and a huge genome size (1C = 21.48–57.35 pg). It also is intriguing how such a spring ephemeral genus thrives in subtropical areas. However, phylogenetic relationships and species delimitation within Amana are challenging. Here we included all species and 84 populations of Amana, which are collected throughout its distribution range. A variety of methods were used to clarify its species relationships based on a combination of morphological, ecological, genetic, evolutionary and phylogenetic species concepts. This evidence supports the recognition of at least 12 species in Amana. Moreover, we explored the complex evolutionary history within the genus and detected several historical hybridization and introgression events based on phylogenetic trees (transcriptomic and plastid), phylonetworks, admixture and ABBA‐BABA analyses. Morphological traits have undergone parallel evolution in the genus. This spring ephemeral genus might have originated from a temperate region, yet finally thrives in subtropical areas, and three hypotheses about its adaptive evolution are proposed for future testing. In addition, we propose a new species, Amana polymorpha, from eastern Zhejiang Province, China. This research also demonstrates that molecular evidence at the genome level (such as transcriptomes) has greatly improved the accuracy and reasonability of species delimitation and taxon classification. [ABSTRACT FROM AUTHOR]

Clear species boundaries are crucial for plans and actions on biodiversity conservation. However, morphological similarities among allied species can result in taxonomic difficulties, thus impeding conservation efforts. In China, Cinnamomum japonicumSiebold is a well‐known endangered plant, yet suffers from longstanding taxonomic issues. Here, we explicitly evaluate whether C. japonicum, C. chenii, and C. chekiangense are the same phylogenetic species on the basis of a multi‐individual sampling strategy. We identified three sets of low‐copy orthologous genes from 19 Lauraceae taxa for phylogenetic inferences. Both the concatenation and coalescent‐based phylogenies supported that C. chenii individuals were embedded in the C. japonicum clade, indicating these two taxa are conspecific. Meanwhile, C. chekiangense accessions formed a monophyly which was not sister to C. japonicum. This result, together with the morphological differences that the leaves of C. japonicum are glabrous with a faveolate pattern of venation while those of C. chekiangense have trichomes and inevident lateral veins, led us to consider both as two distinct species. Based on 17 728 neutral single nucleotide polymorphisms (SNPs), the ADMIXTURE analysis suggested that the Chinese C. japonicum populations in Zhoushan Archipelago (=C. chenii) were genetically differentiated from the Japanese and Korean ones. Furthermore, ecological niche modeling predicted that the present distribution area of Chinese C. japonicum is likely to be unsuitable under global warming scenarios. Together with its limited distribution and genetic uniqueness, we recommend that Chinese C. japonicum deserves conservation priorities. [ABSTRACT FROM AUTHOR]

The article validates the new combinations wherein Typhonium s.l. was divided into four genera based on molecular phylogeny and morphology where Typhonium sections Diversifolia Scrinoonma et J. Murata, Pedata Sriboonma et J. Mura and Hirsuta Sriboonma et J. Murata were transferred to a generic rank. These new combinations include Typhonium diversifolium, Typhonium alpinum under Diversiarum and Typhonium hirsutum under Hirsutiarum.

Background and Aims The East Asian–Tethyan disjunction pattern and its mechanisms of formation have long been of interest to researchers. Here, we studied the biogeographical history of Asteraceae tribe Cardueae, with a particular focus on the temperate East Asian genus Atractylodes DC. to understand the role of tectonic and climatic events in driving the diversification and disjunctions of the genus. Methods A total of 76 samples of Atractylodes from 36 locations were collected for RAD-sequencing. Three single nucleotide polymorphism (SNP) datasets based on different filtering strategies were used for phylogenetic analyses. Molecular dating and ancestral distribution reconstruction were performed using both chloroplast DNA sequences (127 Cardueae samples) and SNP (36 Atractylodes samples) datasets. Key Results Six species of Atractylodes were well resolved as individually monophyletic, although some introgression was identified among accessions of A. chinensis , A. lancea and A. koreana. Dispersal of the subtribe Carlininae from the Mediterranean to East Asia occurred after divergence between Atractylodes and Carlina L. +  Atractylis L. +  Thevenotia DC. at ~31.57 Ma, resulting in an East Asian–Tethyan disjunction. Diversification of Atractylodes in East Asia mainly occurred from the Late Miocene to the Early Pleistocene. Conclusions Aridification of Asia and the closure of the Turgai Strait in the Late Oligocene promoted the dispersal of Cardueae from the Mediterranean to East China. Subsequent uplift of the Qinghai–Tibet Plateau as well as changes in Asian monsoon systems resulted in an East Asian–Tethyan disjunction between Atractylodes and Carlina  +  Atractylis  +  Thevenotia. In addition, Late Miocene to Quaternary climates and sea level fluctuations played major roles in the diversification of Atractylodes. Through this study of different taxonomic levels using genomic data, we have revealed an overlooked dispersal route between the Mediterranean and far East Asia (Japan/Korea) via Central Asia and East China. [ABSTRACT FROM AUTHOR]

Nothapodytes (Icacinaceae) is a genus of seven to eleven evergreen or deciduous tree species distributed in tropical Asia from India to Japan. Nothapodytes nimmoniana sensu lato is the most widespread species of the genus, being reported sporadically throughout South Asia, Southeast Asia, Taiwan, and Japan’s southwest islands. Nothapodytes amamianus was recently described from Amami-oshima, Japan, the northeastern edge of this widespread species’ range. However, the phylogenetic distinction between these two species has yet to be explored. Here we present an analysis of molecular species delimitation to test the morphology-based taxonomic hypothesis currently used to differentiate the two species. The results clearly show that N. nimmoniana sensu lato comprises two species, one in India and the other in Taiwan and Japan, including N. amamianus, requiring a reassessment of the morphological traits hitherto used to define the former and distinguish it from the latter in East Asia. Based on the taxonomic history of the taxa and rules of nomenclature, the name N. nimmoniana is retained for the former. We propose a new combination, N. insularis, for the latter. Longitudinal intraspecific geographic structure is highlighted as an apparent indicator of further hidden diversity in India’s Western Ghats. [ABSTRACT FROM AUTHOR]

We review the representation of Ginkgo biloba L., a quintessentially Chinese plant, in the art of those Western botanists who first encountered it in China and Japan. We also show how several later representations of Ginkgo, in both the West and the East, were inspired and made possible by specimens of Ginkgo in cultivation. [ABSTRACT FROM AUTHOR]