135 results on '"Olmer, R."'
Search Results
2. P020 Evaluation of TMEM16A as a modifier of the cystic fibrosis lung phenotype utilising cystic fibrosis patient-specific human-induced pluripotent stem cells
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Jaboreck, M.-C., primary, Merkert, S., additional, von Schledorn, L., additional, Zöllner, J., additional, Cleve, N., additional, Haase, A., additional, Olmer, R., additional, Martin, U., additional, Galietta, L., additional, Mall, M., additional, and Balázs, A., additional
- Published
- 2022
- Full Text
- View/download PDF
3. Generation of two human ISG15 knockout iPSC clones using CRISPR/Cas9 editing
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Merkert, S., primary, Jaboreck, M.-C., additional, Engels, L., additional, Malik, M.N.H., additional, Göhring, G., additional, Pessler, F., additional, Martin, U., additional, and Olmer, R., additional
- Published
- 2021
- Full Text
- View/download PDF
4. WS07.5 Evaluation of TMEM16A as a modifier for cystic fibrosis lung phenotype utilising cystic fibrosis patient-specific human-induced pluripotent stem cells
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Jaboreck, M.-C., primary, Olmer, R., additional, Merkert, S., additional, and Martin, U., additional
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- 2021
- Full Text
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5. Mass expansion of human pluripotent stem cells in controlled, stirred bioreactors: OP-140
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Zweigerdt, R, Olmer, R, Schwanke, K, Templin, C, Haverich, A, and Martin, U
- Published
- 2011
6. Towards the Development of a Biohybrid Lung as Alternative to Lung Transplantation
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Pflaum, M., primary, Katsirntaki, K., additional, Jurmann, S., additional, Figueiredo, C., additional, Blasczyck, R., additional, Olmer, R., additional, Martin, U., additional, Haverich, A., additional, and Wiegmann, B., additional
- Published
- 2020
- Full Text
- View/download PDF
7. FMRP expression studies in blood and hair roots in a fragile X family with methylation mosaics
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de Vries, B B A, Severijnen, L-A, Jacobs, A, Olmer, R, Halley, D J J, Oostra, B A, and Willemsen, R
- Published
- 2003
8. FMRP expression studies in blood and hair roots in a fragile X family with methylation mosaics. (Letters to JMG)
- Author
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Vries, B.B.A. de, Severijnen, L-A, Jacobs, A., Olmer, R., Halley, D.J.J., Oostra, B.A., and Willemsen, R.
- Subjects
Fragile X syndrome -- Genetic aspects -- Research ,Genetic disorders -- Research -- Genetic aspects ,Mental retardation -- Causes of -- Genetic aspects -- Research ,Hair -- Analysis -- Genetic aspects -- Research ,Blood -- Genetic aspects -- Analysis -- Research ,Genetic screening -- Genetic aspects -- Analysis -- Research ,Health ,Analysis ,Research ,Genetic aspects ,Causes of - Abstract
The fragile X syndrome is a common cause of familial mental retardation with an estimated prevalence of 1/4000-1/6000 for males in western countries. (1-3) This X linked disorder is characterised [...]
- Published
- 2003
9. Investigating role of FGF10 in differentiation of human lung alvelolar epithelial cells using human ESCs and hiPSCs.
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Taghizadeh, S, additional, Kheirolahi, V, additional, Snoeck, HW, additional, Olmer, R, additional, Martin, U, additional, and Bellusci, S, additional
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- 2018
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10. Differentiation of human pluripotent stem cells into airway epithelial cells
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Ulrich, S, primary, Weinreich, S, additional, Haller, R, additional, Menke, S, additional, Olmer, R, additional, and Martin, U, additional
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- 2015
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11. hiPSC derived endothelial cell types from scalable cultures for biofunctionalization and tissue engineering
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Olmer, R, primary, Szepes, M, additional, Menke, S, additional, Pflaum, M, additional, Schmeckebier, S, additional, Gruh, I, additional, and Martin, U, additional
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- 2015
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- View/download PDF
12. Controlling Expansion and Cardiomyogenic Differentiation of Human Pluripotent Stem Cells in Scalable Suspension Culture
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Kempf, H, Olmer, R, Kropp, C, Rueckert, M, Jara-Avaca, M, Robles-Diaz, D, Franke, A, Elliott, DA, Wojciechowski, D, Fischer, M, Lara, AR, Kensah, G, Gruh, I, Haverich, A, Martin, U, Zweigerdt, R, Kempf, H, Olmer, R, Kropp, C, Rueckert, M, Jara-Avaca, M, Robles-Diaz, D, Franke, A, Elliott, DA, Wojciechowski, D, Fischer, M, Lara, AR, Kensah, G, Gruh, I, Haverich, A, Martin, U, and Zweigerdt, R
- Abstract
To harness the potential of human pluripotent stem cells (hPSCs), an abundant supply of their progenies is required. Here, hPSC expansion as matrix-independent aggregates in suspension culture was combined with cardiomyogenic differentiation using chemical Wnt pathway modulators. A multiwell screen was scaled up to stirred Erlenmeyer flasks and subsequently to tank bioreactors, applying controlled feeding strategies (batch and cyclic perfusion). Cardiomyogenesis was sensitive to the GSK3 inhibitor CHIR99021 concentration, whereas the aggregate size was no prevailing factor across culture platforms. However, in bioreactors, the pattern of aggregate formation in the expansion phase dominated subsequent differentiation. Global profiling revealed a culture-dependent expression of BMP agonists/antagonists, suggesting their decisive role in cell-fate determination. Furthermore, metallothionein was discovered as a potentially stress-related marker in hPSCs. In 100 ml bioreactors, the production of 40 million predominantly ventricular-like cardiomyocytes (up to 85% purity) was enabled that were directly applicable to bioartificial cardiac tissue formation.
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- 2014
13. hiPSC derived endothelial cell types from scalable cultures for biofunctionalization and tissue engineering
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Olmer, R, primary, Szepes, M, additional, Becker, S, additional, Gruh, I, additional, and Martin, U, additional
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- 2014
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14. Application of the new classification on patients with a disorder of sex development in Indonesia
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Juniarto, A.Z. (Achmad), Zwan, Y.G. (Yvonne ) van der, Santosa, A., Hersmus, R. (Remko), Jong, F.H. (Frank) de, Olmer, R. (Renske), Brüggenwirth, H.T. (Hennie), Themmen, A.P.N. (Axel), Wolffenbuttel, K.P. (Katja), Looijenga, L.H.J. (Leendert), Faradz, S.M.H. (Sultana), Drop, S.L.S. (Stenvert), Juniarto, A.Z. (Achmad), Zwan, Y.G. (Yvonne ) van der, Santosa, A., Hersmus, R. (Remko), Jong, F.H. (Frank) de, Olmer, R. (Renske), Brüggenwirth, H.T. (Hennie), Themmen, A.P.N. (Axel), Wolffenbuttel, K.P. (Katja), Looijenga, L.H.J. (Leendert), Faradz, S.M.H. (Sultana), and Drop, S.L.S. (Stenvert)
- Abstract
Disorder of sex development (DSD) patients in Indonesia most often do not receive a proper diagnostic evaluation and treatment. This study intended to categorize 88 Indonesian patients in accordance with the new consensus DSD algorithm. Diagnostic evaluation including clinical, hormonal, genetic, imaging, surgical, and histological parameters was performed. Fifty-three patients were raised as males, and 34 as females. Of 22 patients with 46, XX DSD, 15 had congenital adrenal hyperplasia, while in one patient, an ovarian Leydig cell tumor was found. In all 58 46, XY DSD patients, 29 were suspected of a disorder of androgen action (12 with an androgen receptor mutation), and in 9, gonadal dysgenesis was found and, in 20, severe hypospadias e.c.i. Implementation of the current consensus statement in a resource-poor environment is very difficult. The aim of the diagnostic workup in developing countries should be to end up with an evidence-based diagnosis. This is essential to improve treatment and thereby to improve the patients' quality of life.
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- 2012
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15. Mucopolysaccharidosis type IIID: 12 new patients and 15 novel mutations.
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Valstar, M.J., Bertoli-Avella, A.M., Wessels, M.W., Ruijter, G.J., Graaf, B. de, Olmer, R., Elfferich, P., Neijs, S., Kariminejad, R., Suheyl Ezgu, F., Tokatli, A., Czartoryska, B., Bosschaart, A.N., Bos-Terpstra, F. van den, Puissant, H., Burger, F., Omran, H., Eckert, D., Filocamo, M., Simeonov, E., Willems, P.J., Wevers, R.A., Niermeijer, M.F., Halley, D.J., Poorthuis, B.J.H.M., Diggelen, O.P. van, Valstar, M.J., Bertoli-Avella, A.M., Wessels, M.W., Ruijter, G.J., Graaf, B. de, Olmer, R., Elfferich, P., Neijs, S., Kariminejad, R., Suheyl Ezgu, F., Tokatli, A., Czartoryska, B., Bosschaart, A.N., Bos-Terpstra, F. van den, Puissant, H., Burger, F., Omran, H., Eckert, D., Filocamo, M., Simeonov, E., Willems, P.J., Wevers, R.A., Niermeijer, M.F., Halley, D.J., Poorthuis, B.J.H.M., and Diggelen, O.P. van
- Abstract
1 mei 2010, Contains fulltext : 89263.pdf (publisher's version ) (Closed access), Mucopolysaccharidosis III D (Sanfilippo disease type D, MPS IIID) is a rare autosomal recessive lysosomal storage disorder previously described in only 20 patients. MPS IIID is caused by a deficiency of N-acetylglucosamine-6-sulphate sulphatase (GNS), one of the enzymes required for the degradation of heparan sulphate. So far only seven mutations in the GNS gene have been reported. The clinical phenotype of 12 new MPS IIID patients from 10 families was studied. Mutation analysis of GNS was performed in 16 patients (14 index cases). Clinical signs and symptoms of the MPS IIID patients appeared to be similar to previously described patients with MPS III. Early development was normal with onset of behavioral problems around the age of 4 years, followed by developmental stagnation, deterioration of verbal communication and subsequent deterioration of motor functions. Sequence analysis of the coding regions of the gene encoding GNS (GNS) resulted in the identification of 15 novel mutations: 3 missense mutations, 1 nonsense mutation, 4 splice site mutations, 3 frame shift mutations, 3 large deletions and 1 in-frame small deletion. They include the first missense mutations and a relatively high proportion of large rearrangements, which warrants the inclusion of quantitative techniques in routine mutation screening of the GNS gene.
- Published
- 2010
16. Mucopolysaccharidosis type IIIA: clinical spectrum and genotype-phenotype correlations.
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Valstar, M.J., Neijs, S., Bruggenwirth, H.T., Olmer, R., Ruijter, G.J., Wevers, R.A., Diggelen, O.P. van, Poorthuis, B.J.H.M., Halley, D.J., Wijburg, F.A., Valstar, M.J., Neijs, S., Bruggenwirth, H.T., Olmer, R., Ruijter, G.J., Wevers, R.A., Diggelen, O.P. van, Poorthuis, B.J.H.M., Halley, D.J., and Wijburg, F.A.
- Abstract
1 december 2010, Contains fulltext : 89261.pdf (publisher's version ) (Closed access), OBJECTIVE: Mucopolysaccharidosis (MPS) IIIA (Sanfilippo syndrome type A) is a lysosomal storage disorder caused by deficiency of the enzyme sulfamidase. Information on the natural course of MPS IIIA is scarce, but is much needed in view of emerging therapies. METHODS: Clinical history and molecular defects of all 110 MPS IIIA patients identified by enzymatic studies in the Netherlands were collected and included in this study. RESULTS: First clinical signs, mainly consisting of delayed speech development and behavioral problems, were noted between the ages of 1 and 6 years. Other symptoms included sleeping and hearing problems, recurrent upper airway infections, diarrhea, and epilepsy. The clinical course varied remarkably and could be correlated with the molecular defects. The frequent pathogenic mutations p.R245H, p.Q380R, p.S66W, and c.1080delC were associated with the classical severe phenotype. Patients compound heterozygous for the p.S298P mutation in combination with 1 of the mutations associated with the classical severe phenotype had a significantly longer preservation of psychomotor functions and a longer survival. Two patients homozygous for the p.S298P mutation, and 4 patients from 3 families heterozygous for 3 missense variants not reported previously (p.T421R, p.P180L, and p.L12Q), showed a remarkably attenuated phenotype. INTERPRETATION: We report the natural history and mutational analysis in a large unbiased cohort of MPS IIIA patients. We demonstrate that the clinical spectrum of MPS IIIA is much broader than previously reported. A significant genotype-phenotype correlation was established in this cohort.
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- 2010
17. Mucopolysaccharidosis type IIIB may predominantly present with an attenuated clinical phenotype.
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Valstar, M.J., Bruggenwirth, H.T., Olmer, R., Wevers, R.A., Verheijen, F.W., Poorthuis, B.J.H.M., Halley, D.J., Wijburg, F.A., Valstar, M.J., Bruggenwirth, H.T., Olmer, R., Wevers, R.A., Verheijen, F.W., Poorthuis, B.J.H.M., Halley, D.J., and Wijburg, F.A.
- Abstract
01 december 2010, Contains fulltext : 89262.pdf (publisher's version ) (Closed access), Mucopolysaccharidosis type IIIB (MPS IIIB, Sanfilippo syndrome type B) is a lysosomal storage disorder caused by deficiency of the enzyme N-acetyl-alpha-D-glucosaminidase (NAGLU). Information on the natural course of MPS IIIB is scarce but much needed in view of emerging therapies. To improve knowledge on the natural course, data on all 52 MPS IIIB patients ever identified by enzymatic studies in the Netherlands were gathered. Clinical data on 44 patients could be retrieved. Only a small number (n = 9; 21%) presented with a classical MPS III phenotype; all other patients showed a much more attenuated course of the disease characterized by a significantly slower regression of intellectual and motor abilities. The majority of patients lived well into adulthood. First signs of the disease, usually mild developmental delay, were observed at a median age of 4 years. Subsequently, patients showed a slowing and eventually a stagnation of development. Patients with the attenuated phenotype had a stable intellectual disability for many years. Molecular analysis was performed in 24 index patients. The missense changes p.R643C, p.S612G, p.E634K, and p.L497V were exclusively found in patients with the attenuated phenotype. MPS IIIB comprises a remarkably wide spectrum of disease severity, and an unselected cohort including all Dutch patients showed a large proportion (79%) with an attenuated phenotype. MPS IIIB must be considered in patients with a developmental delay, even in the absence of a progressive decline in intellectual abilities. A key feature, necessitating metabolic studies, is the coexistence of behavioral problems.
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- 2010
18. A high proportion of novel mutations in BRCA1 with strong founder effects among Dutch and Belgian hereditary breast and ovarian cancer families
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Peelen, T, van Vliet, M, Petrij-Bosch, A, Mieremet, R, Szabo, C, van den Ouweland, A M, Hogervorst, F, Brohet, R, Ligtenberg, M J, Teugels, E, van der Luijt, R, van der Hout, A H, Gille, J J, Pals, G, Jedema, I, Olmer, R, van Leeuwen, I, Newman, B, Plandsoen, M, van der Est, M, Brink, G, Hageman, S, Arts, P J, Bakker, M M, Devilee, P, VU University medical center, and Human genetics
- Abstract
We have identified 79 mutations in BRCA1 in a set of 643 Dutch and 23 Belgian hereditary breast and ovarian cancer families collected either for research or for clinical diagnostic purposes. Twenty-eight distinct mutations have been observed, 18 of them not previously reported and 12 of them occurring more than once. Most conspicuously, a 2804delAA mutation has been found 19 times and has never been reported outside the Netherlands. A common haplotype spanning > or = 375 kb could be identified for each of the nine examined recurrent mutations, indicating the presence of multiple BRCA1 founder mutations in the Dutch population. The 2804delAA mutation has been estimated to have originated approximately 32 generations ago. No specific breast or ovarian cancer phenotype could be assigned to any of the common mutations, and the ovarian cancer incidence among 18 families with the 2804delAA mutation was heterogeneous.
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- 1997
19. A high proportion of novel mutations in BRCA1 with strong founder effects among Dutch and Belgian hereditary breast and ovarian cancer families
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Peelen, T., Vliet, M., Petrij-Bosch, A., Mieremet, R., Szabo, C., Den Ouweland, A. M., Hogervorst, F., Brohet, R., Ligtenberg, M. J., Erik Teugels, Luijt, R., Ah Van Der Hout, Gille, J. J., Pals, G., Jedema, I., Olmer, R., Leeuwen, I., Newman, B., Plandsoen, M., Est, M., Brink, G., Hageman, S., Arts, P. J., Bakker, M. M., Bart Neyns, Devilee, P., Jacques De Greve, Mary-Louise Bonduelle, Medical Imaging and Physical Sciences, and Vrije Universiteit Brussel
- Subjects
Genetic Testing ,BRCA1 - Abstract
We have identified 79 mutations in BRCA1 in a set of 643 Dutch and 23 Belgian hereditary breast and ovarian cancer families collected either for research or for clinical diagnostic purposes. Twenty-eight distinct mutations have been observed, 18 of them not previously reported and 12 of them occurring more than once. Most conspicuously, a 2804delAA mutation has been found 19 times and has never been reported outside the Netherlands. A common haplotype spanning > or = 375 kb could be identified for each of the nine examined recurrent mutations, indicating the presence of multiple BRCA1 founder mutations in the Dutch population. The 2804delAA mutation has been estimated to have originated approximately 32 generations ago. No specific breast or ovarian cancer phenotype could be assigned to any of the common mutations, and the ovarian cancer incidence among 18 families with the 2804delAA mutation was heterogeneous.
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- 1997
20. BRCA1 genomic deletions are major founder mutations in Dutch breast cancer patients (vol 17, pg 341, 1997)
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Petrij-Bosch, A., Peelen, T., van Vliet, M., van Eijk, R., Olmer, R., Drusedau, M., Hogervorst, F. B. L., Hageman, S., Arts, P. J. W., Ligtenberg, M. J. L., Meijers-Heijboer, H., Klijn, J. G. M., Vasen, H. F. A., Cornelisse, C. J., van't Veer, L. J., Bakker, E., van Ommen, G. J., Devilee, P., and Other departments
- Published
- 1997
21. FMRP expression studies in blood and hair roots in a fragile X family with methylation mosaics.
- Author
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Vries, L.B.A. de, Severijnen, L.A., Jacobs, A.J.M, Olmer, R., Halley, D.J., Oostra, B.A., Willemsen, R., Vries, L.B.A. de, Severijnen, L.A., Jacobs, A.J.M, Olmer, R., Halley, D.J., Oostra, B.A., and Willemsen, R.
- Abstract
Item does not contain fulltext
- Published
- 2003
22. Twin sisters, monozygotic with the fragile X mutation, but with a different phenotype
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Willemsen, R. (Rob), Olmer, R., Diego Otero, Y. (Yolanda) de, Oostra, B.A. (Ben), Willemsen, R. (Rob), Olmer, R., Diego Otero, Y. (Yolanda) de, and Oostra, B.A. (Ben)
- Abstract
The absence of the fragile X mental retardation protein (FMRP) results in fragile X syndrome. All males with a full mutation in the FMR1 gene and an inactive FMR1 gene are mentally retarded while 60% of the females with a full mutation are affected. Here we describe monozygotic twin sisters who both have a full mutation in their FMR1 gene, one of whom is normal while the other is affected. Using molecular and protein studies it was shown that owing to preferential X inactivation in the affected female a minority of the cells expressed the normal FMR1 gene, while in her sister most cells expressed the normal FMR1 gene. This shows that X inactivation took place in the female twins after separation of the embryos and that for a normal phenotype FMR1 expression is necessary in the majority of cells.
- Published
- 2000
23. Twin sisters, monozygotic with the fragile X mutation, but with a different phenotype
- Author
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Willemsen, Rob, Olmer, R, de Diego Otero, MY (Yolanda), Oostra, Ben, Willemsen, Rob, Olmer, R, de Diego Otero, MY (Yolanda), and Oostra, Ben
- Published
- 2000
24. BRCA1 genomic deletions are major founder mutations in Dutch breast cancer patients
- Author
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Petrij-Bosch, A., Peelen, T., Vliet, M. van, Eijk, R. van, Olmer, R., Drüsedau, M., Hogervorst, F.B.L., Hageman, S., Arts, P.J.W., Ligtenberg, M.J.L., Meijers-Heijboer, H., Klijn, J.G.M., Vasen, H.F.A., Cornelisse, C.J., Veer, L.J. van 't, Bakker, E., Ommen, G-J.B. van, Devilee, P., Petrij-Bosch, A., Peelen, T., Vliet, M. van, Eijk, R. van, Olmer, R., Drüsedau, M., Hogervorst, F.B.L., Hageman, S., Arts, P.J.W., Ligtenberg, M.J.L., Meijers-Heijboer, H., Klijn, J.G.M., Vasen, H.F.A., Cornelisse, C.J., Veer, L.J. van 't, Bakker, E., Ommen, G-J.B. van, and Devilee, P.
- Abstract
Contains fulltext : 25346___.PDF (publisher's version ) (Open Access)
- Published
- 1997
25. BRCA1 genomic deletions are major founder mutations in Dutch breast cancer patients
- Author
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Petrij-Bosch, A. (Anne), Peelen, T. (Tamara), Vliet, M. (Margreethe) van, Eijk, R. (Ronald) van, Olmer, R. (Renske), Drüsedau, M. (Marion), Hogervorst, F.B.L. (Frans), Hageman, G.S. (Gregory), Arts, W.F.M. (Willem Frans), Ligtenberg, M.J. (Marjolijn), Meijers-Heijboer, E.J. (Hanne), Klijn, J.G.M. (Jan), Vasen, H. (Hans), Cornelisse, C.J., Veer, L.J. (Laura) van 't, Bakker, E. (Egbert), Ommen, G.J. (Gert) van, Devilee, P. (Peter), Petrij-Bosch, A. (Anne), Peelen, T. (Tamara), Vliet, M. (Margreethe) van, Eijk, R. (Ronald) van, Olmer, R. (Renske), Drüsedau, M. (Marion), Hogervorst, F.B.L. (Frans), Hageman, G.S. (Gregory), Arts, W.F.M. (Willem Frans), Ligtenberg, M.J. (Marjolijn), Meijers-Heijboer, E.J. (Hanne), Klijn, J.G.M. (Jan), Vasen, H. (Hans), Cornelisse, C.J., Veer, L.J. (Laura) van 't, Bakker, E. (Egbert), Ommen, G.J. (Gert) van, and Devilee, P. (Peter)
- Abstract
To date, more than 300 distinct small deletions, insertions and point mutations, mostly leading to premature termination of translation, have been reported in the breast/ovarian-cancer susceptibility gene BRCA1. The elevated frequencies of some mutations in certain ethnic subpopulations are caused by founder effects, rather than by mutation hotspots. Here we report that the currently available mutation spectrum of BRCA1 has been biased by PCR-based mutation-screening methods, such as SSCP, the protein truncation test (PTT) and direct sequencing, using genomic DNA as template. Three large genomic deletions that are not detected by these approaches comprise 36% of all BRCA1 mutations found in Dutch breast-cancer families to date. A 510-bp Alu- mediated deletion comprising exon 22 was found in 8 of 170 breast-cancer families recruited for research purposes and in 6 of 49 probands referred to the Amsterdam Family Cancer Clinic for genetic counselling. In addition, a 3,835-bp Alu-mediated deletion encompassing exon 13 was detected in 6 of the 170 research families, while an deletion of approximately 14 kb was detected in a single family. Haplotype analyses indicated that each recurrent deletion had a single common ancestor.
- Published
- 1997
- Full Text
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26. Rapid detection of BRCA1 mutations by the protein truncation test
- Author
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Hogervorst, F.B.L. (Frans), Cornelis, R.S. (Renée), Bout, M. (Mattie), Vliet, M. (Margreethe) van, Oosterwijk, J.C. (Jan), Olmer, R. (Renske), Bakker, B. (Boudewijn), Klijn, J.G.M. (Jan), Vasen, H. (Hans), Meijers-Heijboer, H. (Hanne), Menko, F. (Fred), Cornelisse, G.J. (Gees), Dunnen, J.T. (Johan) den, Devilee, P. (Peter), Ommen, G.J. (Gert) van, Hogervorst, F.B.L. (Frans), Cornelis, R.S. (Renée), Bout, M. (Mattie), Vliet, M. (Margreethe) van, Oosterwijk, J.C. (Jan), Olmer, R. (Renske), Bakker, B. (Boudewijn), Klijn, J.G.M. (Jan), Vasen, H. (Hans), Meijers-Heijboer, H. (Hanne), Menko, F. (Fred), Cornelisse, G.J. (Gees), Dunnen, J.T. (Johan) den, Devilee, P. (Peter), and Ommen, G.J. (Gert) van
- Abstract
More than 75% of the reported mutations in the hereditary breast and ovarian cancer gene, BRCA1, result in truncated proteins. We have used the protein truncation test (PIT) to screen for mutations in exon 11, which encodes 61 % of BRCA1. In 45 patients from breast and/or ovarian cancer families we found six novel mutations: two single nucleotide insertions, three small deletions (1−5 bp) and a nonsense mutation identified two unrelated families. Furthermore, we were able to amplify the remaining coding region by RT−PCR using lymphocyte RNA. Combined with PTT, we detected aberrantly spliced products affecting exons 5 and 6 in one of two BRCA1−linked families examined. The protein truncation test promises to become a valuable technique in detecting BRCA1 mutations.
- Published
- 1995
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27. Prenatal diagnosis of the fragile X syndrome: loss of mutation owing to a double recombinant or gene conversion event at the FMR1 locus.
- Author
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Losekoot, M, primary, Hoogendoorn, E, additional, Olmer, R, additional, Jansen, C C, additional, Oosterwijk, J C, additional, van den Ouweland, A M, additional, Halley, D J, additional, Warren, S T, additional, Willemsen, R, additional, Oostra, B A, additional, and Bakker, E, additional
- Published
- 1997
- Full Text
- View/download PDF
28. Inversions in the factor VIII gene: improvement of carrier detection and prenatal diagnosis in Dutch haemophilia A families.
- Author
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Deutz-Terlouw, P P, primary, Losekoot, M, additional, Olmer, R, additional, Pieneman, W C, additional, de Vries-v d Weerd, S, additional, Briet, E, additional, and Bakker, E, additional
- Published
- 1995
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29. Transplantation and tracking of human-induced pluripotent stem cells in a pig model of myocardial infarction: assessment of cell survival, engraftment, and distribution by hybrid single photon emission computed tomography/computed tomography of sodium iodide symporter transgene expression.
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Templin C, Zweigerdt R, Schwanke K, Olmer R, Ghadri JR, Emmert MY, Müller E, Küest SM, Cohrs S, Schibli R, Kronen P, Hilbe M, Reinisch A, Strunk D, Haverich A, Hoerstrup S, Lüscher TF, Kaufmann PA, Landmesser U, and Martin U
- Published
- 2012
- Full Text
- View/download PDF
30. Twin sisters, monozygotic with the fragile X mutation, but with a different phenotype
- Author
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Willemsen, R., Olmer, R., Otero, Y.D.D., and Oostra, B.A.
- Abstract
The absence of the fragile X mental retardation protein (FMRP) results in fragile X syndrome. All males with a full mutation in the FMR1 gene and an inactive FMR1 gene are mentally retarded while 60% of the females with a full mutation are affected. Here we describe monozygotic twin sisters who both have a full mutation in their FMR1 gene, one of whom is normal while the other is affected. Using molecular and protein studies it was shown that owing to preferential X inactivation in the affected female a minority of the cells expressed the normal FMR1 gene, while in her sister most cells expressed the normal FMR1 gene. This shows that X inactivation took place in the female twins after separation of the embryos and that for a normal phenotype FMR1 expression is necessary in the majority of cells.
- Published
- 2000
31. High-Throughput Screening for Modulators of CFTR Activity Based on Genetically Engineered Cystic Fibrosis Disease-Specific iPSCs
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M. Veltman, Lena Engels, Silke Radetzki, Janina Zöllner, Madline Schubert, Ruth Olmer, Bob J. Scholte, Luis J. V. Galietta, Ulrich Martin, Jens Peter von Kries, Sylvia Merkert, Nicoletta Pedemonte, Merkert, S., Schubert, M., Olmer, R., Engels, L., Radetzki, S., Veltman, M., Scholte, B. J., Zollner, J., Pedemonte, N., Galietta, L. J. V., von Kries, J. P., Martin, U., Clinical Genetics, Cell biology, and Pediatrics
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0301 basic medicine ,Cystic Fibrosis ,Drug Evaluation, Preclinical ,Aminopyridines ,Cystic Fibrosis Transmembrane Conductance Regulator ,Quinolones ,medicine.disease_cause ,Aminophenols ,Biochemistry ,Cystic fibrosis ,0302 clinical medicine ,CFTR ,Induced pluripotent stem cell ,lcsh:QH301-705.5 ,Sequence Deletion ,Mutation ,lcsh:R5-920 ,biology ,genome engineering by TALEN ,Cystic fibrosis transmembrane conductance regulator ,Cell biology ,human iPSCs ,Technology Platforms ,lcsh:Medicine (General) ,Genetic Engineering ,differentiation to intestinal epithelia ,Resource ,High-throughput screening ,Induced Pluripotent Stem Cells ,halide-sensitive eYFP ,Cell Line ,03 medical and health sciences ,Genetics ,medicine ,Humans ,Amino Acid Sequence ,Benzodioxoles ,cystic fibrosi ,high-throughput drug screening ,Epithelial Cells ,Cell Biology ,medicine.disease ,030104 developmental biology ,lcsh:Biology (General) ,Cell culture ,biology.protein ,Immortalised cell line ,030217 neurology & neurosurgery ,Function (biology) ,Developmental Biology - Abstract
Summary: Organotypic culture systems from disease-specific induced pluripotent stem cells (iPSCs) exhibit obvious advantages compared with immortalized cell lines and primary cell cultures, but implementation of iPSC-based high-throughput (HT) assays is still technically challenging. Here, we demonstrate the development and conduction of an organotypic HT Cl−/I− exchange assay using cystic fibrosis (CF) disease-specific iPSCs. The introduction of a halide-sensitive YFP variant enabled automated quantitative measurement of Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) function in iPSC-derived intestinal epithelia. CFTR function was partially rescued by treatment with VX-770 and VX-809, and seamless gene correction of the p.Phe508del mutation resulted in full restoration of CFTR function. The identification of a series of validated primary hits that improve the function of p.Phe508del CFTR from a library of ∼42,500 chemical compounds demonstrates that the advantages of complex iPSC-derived culture systems for disease modeling can also be utilized for drug screening in a true HT format. : In this article, Martin and colleagues demonstrate the development and conduction of a high-throughput Cl−/I− exchange assay using CF disease-specific iPSC-derived intestinal cells. They screened a library of ∼42,500 chemical compounds and validated primary hits, underlining that the advantages of complex iPSC-derived culture systems for disease modeling can be utilized for drug screening in a true HT format. Keywords: cystic fibrosis, human iPSCs, genome engineering by TALENs, CFTR, high-throughput drug screening, halide-sensitive eYFP, differentiation to intestinal epithelia
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- 2017
32. L’habitat de l’âge du Fer et le réseau hydrographique
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Buchsenschutz, Olivier, Celtes et Etrusques : identités, pouvoirs, échanges, Archéologie et Philologie d'Orient et d'Occident (AOROC), École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS), Fabienne Olmer, Réjane Roure, Buchsenschutz, Olivier, École normale supérieure - Paris (ENS Paris)-École pratique des hautes études (EPHE)-Centre National de la Recherche Scientifique (CNRS)-Paris Sciences et Lettres (PSL)-École normale supérieure - Paris (ENS Paris)-École pratique des hautes études (EPHE)-Centre National de la Recherche Scientifique (CNRS)-Paris Sciences et Lettres (PSL), and F. Olmer, R . Roure
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[SHS.ARCHEO] Humanities and Social Sciences/Archaeology and Prehistory ,[SHS.ARCHEO]Humanities and Social Sciences/Archaeology and Prehistory ,habitat ,Gaulois ,fleuve ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 2015
33. STRUCTURE-FUNCTION RELATIONSHIPS OF MUCOCILIARY CLEARANCE IN HUMAN AIRWAYS.
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Roth D, Şahin AT, Ling F, Tepho N, Senger CN, Quiroz EJ, Calvert BA, van der Does AM, Güney TG, Glasl S, van Schadewijk A, von Schledorn L, Olmer R, Kanso E, Nawroth JC, and Ryan AL
- Abstract
Mucociliary clearance is a key mechanical defense mechanism of human airways, and clearance failure is linked to major respiratory diseases, such as chronic obstructive pulmonary disease (COPD) and asthma. While single-cell transcriptomics have unveiled the cellular complexity of the human airway epithelium, our understanding of the mechanics that link epithelial structure to clearance function mainly stem from animal models. This reliance on animal data limits crucial insights into human airway barrier function and hampers the human-relevant in vitro modeling of airway diseases. Our study fills this crucial knowledge gap and for the first time (1) maps the distribution of ciliated and secretory cell types on the mucosal surface along the proximo-distal axis of the rat and human airway tree, (2) identifies species-specific differences in ciliary beat and clearance function, and (3) elucidates structural parameters of airway epithelia that predict clearance function in both native and in vitro tissues alike. Our broad range of experimental approaches and physics-based modeling translate into generalizable parameters to quantitatively benchmark the human-relevancy of mucociliary clearance in experimental models, and to characterize distinct disease states., Competing Interests: COMPETING INTERESTS DECLARATIONS The authors declare no competing interests.
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- 2024
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34. Alpha-1-antitrypsin improves anastomotic healing in intestinal epithelial cells model.
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Schukfeh N, Sivaraman K, Schmidt A, Vieten G, Dingemann J, Weidner J, Olmer R, and Janciauskiene S
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- Humans, Epithelial Cells drug effects, Intestinal Mucosa drug effects, Cells, Cultured, alpha 1-Antitrypsin genetics, alpha 1-Antitrypsin pharmacology, Cell Proliferation drug effects, Wound Healing drug effects, Anastomosis, Surgical
- Abstract
Purpose: Intestinal anastomosis is a routine procedure in pediatric surgery, with leakage being a significant complication. Human alpha1-antitrypsin (AAT), whose physiological serum concentrations range from 0.9-2.0 mg/ml, is known to accelerate wound healing and stimulate the expression of cell proliferation-related genes. We hypothesized that AAT might enhance anastomotic healing., Methods: In a monolayer of non-tumorigenic HIEC-6 epithelial cells derived from fetal intestine a scratch was created. Standard medium without (control) or with AAT (0.5 and 1 mg/ml) was added. Cells were observed using a Life-Cell Imaging System. Cell proliferation was assessed, and the expression of proliferation-related genes was measured by qRT-PCR., Results: In the presence of AAT, the scratch closed significantly faster. Cells treated with 1 mg/ml AAT showed 53% repopulation after 8 h and 97% after 18 h, while control cells showed 24% and 60% repopulation, respectively (p < 0.02). The treatment with AAT induced HIEC-6-cell proliferation and significantly increased the mRNA-expression of CDKN1A, CDKN2A, ANGPTL4, WNT3 and COL3A1 genes. AAT did not change the mRNA-expression of CXCL8 but decreased levels of IL-8 as compared to controls., Conclusion: At physiological concentrations AAT accelerates the confluence of intestinal cells and increases cell proliferation. The local administration of AAT may bear therapeutic potential to improve anastomotic healing., (© 2024. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)
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- 2024
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35. Ciliary Ultrastructure Assessed by Transmission Electron Microscopy in Adults with Bronchiectasis and Suspected Primary Ciliary Dyskinesia but Inconclusive Genotype.
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Staar BO, Hegermann J, Auber B, Ewen R, von Hardenberg S, Olmer R, Pink I, Rademacher J, Wetzke M, and Ringshausen FC
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- Humans, Adult, Mutation, Cilia ultrastructure, Genotype, Microscopy, Electron, Transmission, NM23 Nucleoside Diphosphate Kinases, Kartagener Syndrome genetics
- Abstract
Whole-exome sequencing has expedited the diagnostic work-up of primary ciliary dyskinesia (PCD), when used in addition to clinical phenotype and nasal nitric oxide. However, it reveals variants of uncertain significance (VUS) in established PCD genes or (likely) pathogenic variants in genes of uncertain significance in approximately 30% of tested individuals. We aimed to assess genotype-phenotype correlations in adults with bronchiectasis, clinical suspicion of PCD, and inconclusive whole-exome sequencing results using transmission electron microscopy (TEM) and ciliary image averaging by the PCD Detect software. We recruited 16 patients with VUS in CCDC39 , CCDC40 , CCDC103 , DNAH5 , DNAH5 / CCDC40 , DNAH8 / HYDIN , DNAH11 , and DNAI1 as well as variants in the PCD candidate genes DNAH1 , DNAH7 , NEK10 , and NME5 . We found normal ciliary ultrastructure in eight patients with VUS in CCDC39 , DNAH1 , DNAH7 , DNAH8 / HYDIN , DNAH11 , and DNAI1 . In six patients with VUS in CCDC40 , CCDC103 , DNAH5 , and DNAI1 , we identified a corresponding ultrastructural hallmark defect. In one patient with homozygous variant in NME5 , we detected a central complex defect supporting clinical relevance. Using TEM as a targeted approach, we established important genotype-phenotype correlations and definite PCD in a considerable proportion of patients. Overall, the PCD Detect software proved feasible in support of TEM.
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- 2023
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36. Human pluripotent stem cell fate trajectories toward lung and hepatocyte progenitors.
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Ori C, Ansari M, Angelidis I, Olmer R, Martin U, Theis FJ, Schiller HB, and Drukker M
- Abstract
In this study, we interrogate molecular mechanisms underlying the specification of lung progenitors from human pluripotent stem cells (hPSCs). We employ single-cell RNA-sequencing with high temporal precision, alongside an optimized differentiation protocol, to elucidate the transcriptional hierarchy of lung specification to chart the associated single-cell trajectories. Our findings indicate that Sonic hedgehog, TGF-β, and Notch activation are essential within an ISL1/NKX2-1 trajectory, leading to the emergence of lung progenitors during the foregut endoderm phase. Additionally, the induction of HHEX delineates an alternate trajectory at the early definitive endoderm stage, preceding the lung pathway and giving rise to a significant hepatoblast population. Intriguingly, neither KDR+ nor mesendoderm progenitors manifest as intermediate stages in the lung and hepatic lineage development. Our multistep model offers insights into lung organogenesis and provides a foundation for in-depth study of early human lung development and modeling using hPSCs., Competing Interests: M.A. is currently an employee of Boehringer Ingelheim. F.J.T. consults for Immunai Inc., Singularity Bio B.V., CytoReason Ltd, Cellarity, and has ownership interest in Dermagnostix GmbH and Cellarity., (© 2023 The Author(s).)
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- 2023
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37. Pharmacological inhibition of bromodomain and extra-terminal proteins induces an NRF-2-mediated antiviral state that is subverted by SARS-CoV-2 infection.
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Mhlekude B, Postmus D, Stenzel S, Weiner J 3rd, Jansen J, Zapatero-Belinchón FJ, Olmer R, Richter A, Heinze J, Heinemann N, Mühlemann B, Schroeder S, Jones TC, Müller MA, Drosten C, Pich A, Thiel V, Martin U, Niemeyer D, Gerold G, Beule D, and Goffinet C
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- Humans, SARS-CoV-2 metabolism, Viral Proteins metabolism, Antiviral Agents pharmacology, COVID-19, Interferon Type I pharmacology
- Abstract
Inhibitors of bromodomain and extra-terminal proteins (iBETs), including JQ-1, have been suggested as potential prophylactics against SARS-CoV-2 infection. However, molecular mechanisms underlying JQ-1-mediated antiviral activity and its susceptibility to viral subversion remain incompletely understood. Pretreatment of cells with iBETs inhibited infection by SARS-CoV-2 variants and SARS-CoV, but not MERS-CoV. The antiviral activity manifested itself by reduced reporter expression of recombinant viruses, and reduced viral RNA quantities and infectious titers in the culture supernatant. While we confirmed JQ-1-mediated downregulation of expression of angiotensin-converting enzyme 2 (ACE2) and interferon-stimulated genes (ISGs), multi-omics analysis addressing the chromatin accessibility, transcriptome and proteome uncovered induction of an antiviral nuclear factor erythroid 2-related factor 2 (NRF-2)-mediated cytoprotective response as an additional mechanism through which JQ-1 inhibits SARS-CoV-2 replication. Pharmacological inhibition of NRF-2, and knockdown of NRF-2 and its target genes reduced JQ-1-mediated inhibition of SARS-CoV-2 replication. Serial passaging of SARS-CoV-2 in the presence of JQ-1 resulted in predominance of ORF6-deficient variant, which exhibited resistance to JQ-1 and increased sensitivity to exogenously administered type I interferon (IFN-I), suggesting a minimised need for SARS-CoV-2 ORF6-mediated repression of IFN signalling in the presence of JQ-1. Importantly, JQ-1 exhibited a transient antiviral activity when administered prophylactically in human airway bronchial epithelial cells (hBAECs), which was gradually subverted by SARS-CoV-2, and no antiviral activity when administered therapeutically following an established infection. We propose that JQ-1 exerts pleiotropic effects that collectively induce an antiviral state in the host, which is ultimately nullified by SARS-CoV-2 infection, raising questions about the clinical suitability of the iBETs in the context of COVID-19., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2023 Mhlekude et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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- 2023
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38. NRF2 activators inhibit influenza A virus replication by interfering with nucleo-cytoplasmic export of viral RNPs in an NRF2-independent manner.
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Waqas FH, Shehata M, Elgaher WAM, Lacour A, Kurmasheva N, Begnini F, Kiib AE, Dahlmann J, Chen C, Pavlou A, Poulsen TB, Merkert S, Martin U, Olmer R, Olagnier D, Hirsch AKH, Pleschka S, and Pessler F
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- Humans, Active Transport, Cell Nucleus, Endothelial Cells metabolism, Karyopherins metabolism, Kelch-Like ECH-Associated Protein 1 metabolism, NF-E2-Related Factor 2 metabolism, Ribonucleoproteins metabolism, RNA, Messenger metabolism, Virus Replication, Influenza A virus genetics, Influenza A Virus, H1N1 Subtype genetics
- Abstract
In addition to antioxidative and anti-inflammatory properties, activators of the cytoprotective nuclear factor erythroid-2-like-2 (NRF2) signaling pathway have antiviral effects, but the underlying antiviral mechanisms are incompletely understood. We evaluated the ability of the NRF2 activators 4-octyl itaconate (4OI), bardoxolone methyl (BARD), sulforaphane (SFN), and the inhibitor of exportin-1 (XPO1)-mediated nuclear export selinexor (SEL) to interfere with influenza virus A/Puerto Rico/8/1934 (H1N1) infection of human cells. All compounds reduced viral titers in supernatants from A549 cells and vascular endothelial cells in the order of efficacy SEL>4OI>BARD = SFN, which correlated with their ability to prevent nucleo-cytoplasmic export of viral nucleoprotein and the host cell protein p53. In contrast, intracellular levels of viral HA mRNA and nucleocapsid protein (NP) were unaffected. Knocking down mRNA encoding KEAP1 (the main inhibitor of NRF2) or inactivating the NFE2L2 gene (which encodes NRF2) revealed that physiologic NRF2 signaling restricts IAV replication. However, the antiviral effect of all compounds was NRF2-independent. Instead, XPO1 knock-down greatly reduced viral titers, and incubation of Calu3 cells with an alkynated 4OI probe demonstrated formation of a covalent complex with XPO1. Ligand-target modelling predicted covalent binding of all three NRF2 activators and SEL to the active site of XPO1 involving the critical Cys528. SEL and 4OI manifested the highest binding energies, whereby the 4-octyl tail of 4OI interacted extensively with the hydrophobic groove of XPO1, which binds nuclear export sequences on cargo proteins. Conversely, SEL as well as the three NRF2 activators were predicted to covalently bind the functionally critical Cys151 in KEAP1. Blocking XPO1-mediated nuclear export may, thus, constitute a "noncanonical" mechanism of anti-influenza activity of electrophilic NRF2 activators that can interact with similar cysteine environments at the active sites of XPO1 and KEAP1. Considering the importance of XPO1 function to a variety of pathogenic viruses, compounds that are optimized to inhibit both targets may constitute an important class of broadly active host-directed treatments that embody anti-inflammatory, cytoprotective, and antiviral properties., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2023 Waqas et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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- 2023
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39. Generation of two human NRF2 knockout iPSC clones using CRISPR/Cas9 editing.
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Merkert S, Haase A, Dahlmann J, Göhring G, Waqas FH, Pessler F, Martin U, and Olmer R
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- Humans, NF-E2-Related Factor 2 genetics, NF-E2-Related Factor 2 metabolism, Endothelial Cells metabolism, Clone Cells metabolism, CRISPR-Cas Systems genetics, Induced Pluripotent Stem Cells metabolism
- Abstract
The nuclear factor erythroid 2-related factor 2 (NFE2L2, known as NRF2) regulates the expression of antioxidative and anti-inflammatory proteins. In order to investigate its impact during viral infections and testing of antiviral compounds, we applied CRISPR/Cas9 editing to eliminate NRF2 in the human iPS cell line MHHi001-A and generated two NRF2 knockout iPSC clones MHHi001-A-6 and MHHi001-A-7. After differentiation into epithelia or endothelial cells, these cells are useful tools to examine the antiviral effects of activators of the NRF2 signaling pathway., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 The Authors. Published by Elsevier B.V. All rights reserved.)
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- 2023
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40. Primary Ciliary Dyskinesia Patient-Specific hiPSC-Derived Airway Epithelium in Air-Liquid Interface Culture Recapitulates Disease Specific Phenotypes In Vitro.
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von Schledorn L, Puertollano Martín D, Cleve N, Zöllner J, Roth D, Staar BO, Hegermann J, Ringshausen FC, Nawroth J, Martin U, and Olmer R
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- Humans, Respiratory System, Epithelium, Phenotype, NM23 Nucleoside Diphosphate Kinases, Induced Pluripotent Stem Cells, Ciliary Motility Disorders genetics
- Abstract
Primary ciliary dyskinesia (PCD) is a rare heterogenic genetic disorder associated with perturbed biogenesis or function of motile cilia. Motile cilia dysfunction results in diminished mucociliary clearance (MCC) of pathogens in the respiratory tract and chronic airway inflammation and infections successively causing progressive lung damage. Current approaches to treat PCD are symptomatic, only, indicating an urgent need for curative therapeutic options. Here, we developed an in vitro model for PCD based on human induced pluripotent stem cell (hiPSC)-derived airway epithelium in Air-Liquid-Interface cultures. Applying transmission electron microscopy, immunofluorescence staining, ciliary beat frequency, and mucociliary transport measurements, we could demonstrate that ciliated respiratory epithelia cells derived from two PCD patient-specific hiPSC lines carrying mutations in DNAH5 and NME5 , respectively, recapitulate the respective diseased phenotype on a molecular, structural and functional level.
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- 2023
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41. Omicron-induced interferon signaling prevents influenza A H1N1 and H5N1 virus infection.
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Bojkova D, Bechtel M, Rothenburger T, Kandler JD, Hayes L, Olmer R, Martin U, Jonigk D, Ciesek S, Wass MN, Michaelis M, and Cinatl J Jr
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- Humans, SARS-CoV-2, Interferons, Antiviral Agents, Influenza A Virus, H5N1 Subtype, Influenza, Human, Influenza A Virus, H1N1 Subtype, COVID-19, Influenza A virus, Janus Kinase Inhibitors
- Abstract
Recent findings in permanent cell lines suggested that SARS-CoV-2 Omicron BA.1 induces a stronger interferon response than Delta. Here, we show that BA.1 and BA.5 but not Delta induce an antiviral state in air-liquid interface cultures of primary human bronchial epithelial cells and primary human monocytes. Both Omicron subvariants caused the production of biologically active types I (α/β) and III (λ) interferons and protected cells from super-infection with influenza A viruses. Notably, abortive Omicron infection of monocytes was sufficient to protect monocytes from influenza A virus infection. Interestingly, while influenza-like illnesses surged during the Delta wave in England, their spread rapidly declined upon the emergence of Omicron. Mechanistically, Omicron-induced interferon signaling was mediated via double-stranded RNA recognition by MDA5, as MDA5 knockout prevented it. The JAK/STAT inhibitor baricitinib inhibited the Omicron-mediated antiviral response, suggesting it is caused by MDA5-mediated interferon production, which activates interferon receptors that then trigger JAK/STAT signaling. In conclusion, our study (1) demonstrates that only Omicron but not Delta induces a substantial interferon response in physiologically relevant models, (2) shows that Omicron infection protects cells from influenza A virus super-infection, and (3) indicates that BA.1 and BA.5 induce comparable antiviral states., (© 2023 The Authors. Journal of Medical Virology published by Wiley Periodicals LLC.)
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- 2023
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42. Identification of novel antiviral drug candidates using an optimized SARS-CoV-2 phenotypic screening platform.
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Bojkova D, Reus P, Panosch L, Bechtel M, Rothenburger T, Kandler JD, Pfeiffer A, Wagner JUG, Shumliakivska M, Dimmeler S, Olmer R, Martin U, Vondran FWR, Toptan T, Rothweiler F, Zehner R, Rabenau HF, Osman KL, Pullan ST, Carroll MW, Stack R, Ciesek S, Wass MN, Michaelis M, and Cinatl J Jr
- Abstract
Reliable, easy-to-handle phenotypic screening platforms are needed for the identification of anti-SARS-CoV-2 compounds. Here, we present caspase 3/7 activity as a readout for monitoring the replication of SARS-CoV-2 isolates from different variants, including a remdesivir-resistant strain, and of other coronaviruses in numerous cell culture models, independently of cytopathogenic effect formation. Compared to other models, the Caco-2 subline Caco-2-F03 displayed superior performance. It possesses a stable SARS-CoV-2 susceptibility phenotype and does not produce false-positive hits due to drug-induced phospholipidosis. A proof-of-concept screen of 1,796 kinase inhibitors identified known and novel antiviral drug candidates including inhibitors of phosphoglycerate dehydrogenase (PHGDH), CDC like kinase 1 (CLK-1), and colony stimulating factor 1 receptor (CSF1R). The activity of the PHGDH inhibitor NCT-503 was further increased in combination with the hexokinase II (HK2) inhibitor 2-deoxy-D-glucose, which is in clinical development for COVID-19. In conclusion, caspase 3/7 activity detection in SARS-CoV-2-infected Caco-2-F03 cells provides a simple phenotypic high-throughput screening platform for SARS-CoV-2 drug candidates that reduces false-positive hits., Competing Interests: The authors declare no competing interests., (© 2023 The Authors.)
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- 2023
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43. SARS-CoV-2 variant Alpha has a spike-dependent replication advantage over the ancestral B.1 strain in human cells with low ACE2 expression.
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Niemeyer D, Stenzel S, Veith T, Schroeder S, Friedmann K, Weege F, Trimpert J, Heinze J, Richter A, Jansen J, Emanuel J, Kazmierski J, Pott F, Jeworowski LM, Olmer R, Jaboreck MC, Tenner B, Papies J, Walper F, Schmidt ML, Heinemann N, Möncke-Buchner E, Baumgardt M, Hoffmann K, Widera M, Thao TTN, Balázs A, Schulze J, Mache C, Jones TC, Morkel M, Ciesek S, Hanitsch LG, Mall MA, Hocke AC, Thiel V, Osterrieder K, Wolff T, Martin U, Corman VM, Müller MA, Goffinet C, and Drosten C
- Subjects
- Humans, Angiotensin-Converting Enzyme 2 genetics, Virus Shedding, Antibodies, Blocking, SARS-CoV-2 genetics, COVID-19
- Abstract
Epidemiological data demonstrate that Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) variants of concern (VOCs) Alpha and Delta are more transmissible, infectious, and pathogenic than previous variants. Phenotypic properties of VOC remain understudied. Here, we provide an extensive functional study of VOC Alpha replication and cell entry phenotypes assisted by reverse genetics, mutational mapping of spike in lentiviral pseudotypes, viral and cellular gene expression studies, and infectivity stability assays in an enhanced range of cell and epithelial culture models. In almost all models, VOC Alpha spread less or equally efficiently as ancestral (B.1) SARS-CoV-2. B.1. and VOC Alpha shared similar susceptibility to serum neutralization. Despite increased relative abundance of specific sgRNAs in the context of VOC Alpha infection, immune gene expression in infected cells did not differ between VOC Alpha and B.1. However, inferior spreading and entry efficiencies of VOC Alpha corresponded to lower abundance of proteolytically cleaved spike products presumably linked to the T716I mutation. In addition, we identified a bronchial cell line, NCI-H1299, which supported 24-fold increased growth of VOC Alpha and is to our knowledge the only cell line to recapitulate the fitness advantage of VOC Alpha compared to B.1. Interestingly, also VOC Delta showed a strong (595-fold) fitness advantage over B.1 in these cells. Comparative analysis of chimeric viruses expressing VOC Alpha spike in the backbone of B.1, and vice versa, showed that the specific replication phenotype of VOC Alpha in NCI-H1299 cells is largely determined by its spike protein. Despite undetectable ACE2 protein expression in NCI-H1299 cells, CRISPR/Cas9 knock-out and antibody-mediated blocking experiments revealed that multicycle spread of B.1 and VOC Alpha required ACE2 expression. Interestingly, entry of VOC Alpha, as opposed to B.1 virions, was largely unaffected by treatment with exogenous trypsin or saliva prior to infection, suggesting enhanced resistance of VOC Alpha spike to premature proteolytic cleavage in the extracellular environment of the human respiratory tract. This property may result in delayed degradation of VOC Alpha particle infectivity in conditions typical of mucosal fluids of the upper respiratory tract that may be recapitulated in NCI-H1299 cells closer than in highly ACE2-expressing cell lines and models. Our study highlights the importance of cell model evaluation and comparison for in-depth characterization of virus variant-specific phenotypes and uncovers a fine-tuned interrelationship between VOC Alpha- and host cell-specific determinants that may underlie the increased and prolonged virus shedding detected in patients infected with VOC Alpha., Competing Interests: I have read the journal’s policy and the authors of this manuscript have the following competing interests: Technische Universität Berlin, Freie Universität Berlin and Charité - Universitätsmedizin have filed a patent application for siRNAs inhibiting SARS-CoV-2 replication with DN as co-author. MAMü and VMC are named together with Charité - Universitätsmedizin Berlin and Euroimmun Medizinische Labordiagnostika AG on a patent application (EP3715847) filed recently regarding the diagnostic of SARS-CoV-2 by antibody testing. The other authors declare no competing interests., (Copyright: © 2022 Niemeyer et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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- 2022
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44. Generation of two TMEM16A knockout iPSC clones each from a healthy human iPSC line, from a Cystic Fibrosis patient specific line with p.Phe508del mutation and from the gene corrected iPSC line.
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Jaboreck MC, Lühmann JL, Mielenz M, Stanke F, Göhring G, Martin U, Olmer R, and Merkert S
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- Humans, Anoctamin-1 genetics, Anoctamin-1 metabolism, Cystic Fibrosis Transmembrane Conductance Regulator genetics, Chlorides metabolism, Chloride Channels genetics, Chloride Channels metabolism, Mutation, Clone Cells metabolism, Cystic Fibrosis genetics, Induced Pluripotent Stem Cells metabolism
- Abstract
The Transmembrane member 16A (TMEM16A), also known as anoctamin-1 (ANO1), is a calcium-activated chloride channel present in the airway epithelium. It is known to be involved in the apical chloride secretion indicating that TMEM16A could be addressed for the treatment of chloride secretion defects like in Cystic- Fibrosis (CF). In this paper we generated knockout cell lines using CRISPR/Cas9-mediated ablation in a healthy human iPSC line (MHHi001-A), in a CF patient iPSC line (MHHi002-A) and in its corrected counterpart (MHHi002-A-1). These lines can be used for gaining information about the role of TMEM16A for mucus secretion and/or production and evaluating its therapeutic potential., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 The Author(s). Published by Elsevier B.V. All rights reserved.)
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- 2022
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45. Flow-induced glycocalyx formation and cell alignment of HUVECs compared to iPSC-derived ECs for tissue engineering applications.
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Lindner M, Laporte A, Elomaa L, Lee-Thedieck C, Olmer R, and Weinhart M
- Abstract
The relevance of cellular in vitro models highly depends on their ability to mimic the physiological environment of the respective tissue or cell niche. Static culture conditions are often unsuitable, especially for endothelial models, since they completely neglect the physiological surface shear stress and corresponding reactions of endothelial cells (ECs) such as alignment in the direction of flow. Furthermore, formation and maturation of the glycocalyx, the essential polysaccharide layer covering all endothelial surfaces and regulating diverse processes, is highly dependent on applied fluid flow. This fragile but utterly important macromolecular layer is hard to analyze, its importance is often underestimated and accordingly neglected in many endothelial models. Therefore, we exposed human umbilical vein ECs (HUVECs) and human induced pluripotent stem cell-derived ECs (iPSC-ECs) as two relevant EC models in a side-by-side comparison to static and physiological dynamic (6.6 dyn cm
-2 ) culture conditions. Both cell types demonstrated an elongation and alignment along the flow direction, some distinct changes in glycocalyx composition on the surface regarding the main glycosaminoglycan components heparan sulfate, chondroitin sulfate or hyaluronic acid as well as an increased and thereby improved glycocalyx thickness and functionality when cultured under homogeneous fluid flow. Thus, we were able to demonstrate the maturity of the employed iPSC-EC model regarding its ability to sense fluid flow along with the general importance of physiological shear stress for glycocalyx formation. Additionally, we investigated EC monolayer integrity with and without application of surface shear stress, revealing a comparable existence of tight junctions for all conditions and a reorganization of the cytoskeleton upon dynamic culture leading to an increased formation of focal adhesions. We then fabricated cell sheets of EC monolayers after static and dynamic culture via non-enzymatic detachment using thermoresponsive polymer coatings as culture substrates. In a first proof-of-concept we were able to transfer an aligned iPSC-EC sheet to a 3D-printed scaffold thereby making a step in the direction of vascular modelling. We envision these results to be a valuable contribution to improvements of in vitro endothelial models and vascular engineering in the future., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Lindner, Laporte, Elomaa, Lee-Thedieck, Olmer and Weinhart.)- Published
- 2022
- Full Text
- View/download PDF
46. ISG15 deficiency features a complex cellular phenotype that responds to treatment with itaconate and derivatives.
- Author
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Waqas SF, Sohail A, Nguyen AHH, Usman A, Ludwig T, Wegner A, Malik MNH, Schuchardt S, Geffers R, Winterhoff M, Merkert S, Martin U, Olmer R, Lachmann N, and Pessler F
- Subjects
- Amino Acids, Branched-Chain genetics, Cytokines genetics, Cytokines metabolism, Humans, Phenotype, Succinates, Transaminases genetics, Ubiquitins genetics, Ubiquitins metabolism, Endothelial Cells metabolism, Interferons genetics
- Abstract
Background: Congenital ISG15 deficiency is a rare autoinflammatory disorder that is driven by chronically elevated systemic interferon levels and predominantly affects central nervous system and skin., Methods and Results: We have developed induced pluripotent stem cell-derived macrophages and endothelial cells as a model to study the cellular phenotype of ISG15 deficiency and identify novel treatments. ISG15
-/- macrophages exhibited the expected hyperinflammatory responses, but normal phagocytic function. In addition, they displayed a multifaceted pathological phenotype featuring increased apoptosis/pyroptosis, oxidative stress, glycolysis, and acylcarnitine levels, but decreased glutamine uptake, BCAT1 expression, branched chain amino acid catabolism, oxidative phosphorylation, β-oxidation, and NAD(P)H-dependent oxidoreductase activity. Furthermore, expression of genes involved in mitochondrial biogenesis and respiratory chain complexes II-V was diminished in ISG15-/- cells. Defective mitochondrial respiration was restored by transduction with wild-type ISG15, but only partially by a conjugation-deficient variant, suggesting that some ISG15 functions in mitochondrial respiration require ISGylation to cellular targets. Treatment with itaconate, dimethyl-itaconate, 4-octyl-itaconate, and the JAK1/2 inhibitor ruxolitinib ameliorated increased inflammation, propensity for cell death, and oxidative stress. Furthermore, the treatments greatly improved mitochondria-related gene expression, BCAT1 levels, redox balance, and intracellular and extracellular ATP levels. However, efficacy differed among the compounds according to read-out and cell type, suggesting that their effects on cellular targets are not identical. Indeed, only itaconates increased expression of anti-oxidant genes NFE2L2, HMOX1, and GPX7, and dimethyl-itaconate improved redox balance the most. Even though itaconate treatments normalized the elevated expression of interferon-stimulated genes, ISG15-/- macrophages maintained their reduced susceptibility to influenza virus infection., Conclusions: These findings expand the cellular phenotype of human ISG15 deficiency and reveal the importance of ISG15 for regulating oxidative stress, branched chain amino acid metabolism, and mitochondrial function in humans. The results validate ruxolitinib as treatment for ISG15 deficiency and suggest itaconate-based medications as additional therapeutics for this rare disorder., (© 2022 The Authors. Clinical and Translational Medicine published by John Wiley & Sons Australia, Ltd on behalf of Shanghai Institute of Clinical Bioinformatics.)- Published
- 2022
- Full Text
- View/download PDF
47. Congenital deficiency reveals critical role of ISG15 in skin homeostasis.
- Author
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Malik MNH, Waqas SF, Zeitvogel J, Cheng J, Geffers R, Gouda ZA, Elsaman AM, Radwan AR, Schefzyk M, Braubach P, Auber B, Olmer R, Müsken M, Roesner LM, Gerold G, Schuchardt S, Merkert S, Martin U, Meissner F, Werfel T, and Pessler F
- Subjects
- Cell Line, Transformed, Cytokines metabolism, Humans, Ubiquitins metabolism, Cytokines deficiency, Dermis metabolism, Fibroblasts metabolism, Homeostasis, Keratinocytes metabolism, Ubiquitins deficiency
- Abstract
Ulcerating skin lesions are manifestations of human ISG15 deficiency, a type I interferonopathy. However, chronic inflammation may not be their exclusive cause. We describe two siblings with recurrent skin ulcers that healed with scar formation upon corticosteroid treatment. Both had a homozygous nonsense mutation in the ISG15 gene, leading to unstable ISG15 protein lacking the functional domain. We characterized ISG15-/- dermal fibroblasts, HaCaT keratinocytes, and human induced pluripotent stem cell-derived vascular endothelial cells. ISG15-deficient cells exhibited the expected hyperinflammatory phenotype, but also dysregulated expression of molecules critical for connective tissue and epidermis integrity, including reduced collagens and adhesion molecules, but increased matrix metalloproteinases. ISG15-/- fibroblasts exhibited elevated ROS levels and reduced ROS scavenger expression. As opposed to hyperinflammation, defective collagen and integrin synthesis was not rescued by conjugation-deficient ISG15. Cell migration was retarded in ISG15-/- fibroblasts and HaCaT keratinocytes, but normalized under ruxolitinib treatment. Desmosome density was reduced in an ISG15-/- 3D epidermis model. Additionally, there were loose architecture and reduced collagen and desmoglein expression, which could be reversed by treatment with ruxolitinib/doxycycline/TGF-β1. These results reveal critical roles of ISG15 in maintaining cell migration and epidermis and connective tissue homeostasis, whereby the latter likely requires its conjugation to yet unidentified targets.
- Published
- 2022
- Full Text
- View/download PDF
48. Targeting the Pentose Phosphate Pathway for SARS-CoV-2 Therapy.
- Author
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Bojkova D, Costa R, Reus P, Bechtel M, Jaboreck MC, Olmer R, Martin U, Ciesek S, Michaelis M, and Cinatl J Jr
- Abstract
SARS-CoV-2 is causing the coronavirus disease 2019 (COVID-19) pandemic, for which effective pharmacological therapies are needed. SARS-CoV-2 induces a shift of the host cell metabolism towards glycolysis, and the glycolysis inhibitor 2-deoxy-d-glucose (2DG), which interferes with SARS-CoV-2 infection, is under development for the treatment of COVID-19 patients. The glycolytic pathway generates intermediates that supply the non-oxidative branch of the pentose phosphate pathway (PPP). In this study, the analysis of proteomics data indicated increased transketolase (TKT) levels in SARS-CoV-2-infected cells, suggesting that a role is played by the non-oxidative PPP. In agreement, the TKT inhibitor benfooxythiamine (BOT) inhibited SARS-CoV-2 replication and increased the anti-SARS-CoV-2 activity of 2DG. In conclusion, SARS-CoV-2 infection is associated with changes in the regulation of the PPP. The TKT inhibitor BOT inhibited SARS-CoV-2 replication and increased the activity of the glycolysis inhibitor 2DG. Notably, metabolic drugs like BOT and 2DG may also interfere with COVID-19-associated immunopathology by modifying the metabolism of immune cells in addition to inhibiting SARS-CoV-2 replication. Hence, they may improve COVID-19 therapy outcomes by exerting antiviral and immunomodulatory effects.
- Published
- 2021
- Full Text
- View/download PDF
49. Towards Biohybrid Lung: Induced Pluripotent Stem Cell Derived Endothelial Cells as Clinically Relevant Cell Source for Biologization.
- Author
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Pflaum M, Dahlmann J, Engels L, Naghilouy-Hidaji H, Adam D, Zöllner J, Otto A, Schmeckebier S, Martin U, Haverich A, Olmer R, and Wiegmann B
- Abstract
In order to provide an alternative treatment option to lung transplantation for patients with end-stage lung disease, we aim for the development of an implantable biohybrid lung (BHL), based on hollow fiber membrane (HFM) technology used in extracorporeal membrane oxygenators. Complete hemocompatibility of all blood contacting surfaces is crucial for long-lasting BHL durability and can be achieved by their endothelialization. Autologous endothelial cells (ECs) would be the ideal cell source, but their limited proliferation potential excludes them for this purpose. As induced pluripotent stem cell-derived ECs enable the generation of a large number of ECs, we assessed and compared their capacity to form a viable and confluent monolayer on HFM, while indicating physiologic EC-specific anti-thrombogenic and anti-inflammatory properties. ECs were generated from three different human iPSC lines, and seeded onto fibronectin-coated poly-4-methyl-1-pentene (PMP) HFM. Following phenotypical characterization, ECs were analyzed for their thrombogenic and inflammatory behavior with or without TNFα induction, using FACS and qRT-PCR. Complementary, leukocyte- and platelet adhesion assays were carried out. The capacity of the iPSC-ECs to reendothelialize cell-free monolayer areas was assessed in a scratch assay. ECs sourced from umbilical cord blood (hCBECs) were used as control. iPSC-derived ECs formed confluent monolayers on the HFM and showed the typical EC-phenotype by expression of VE-cadherin and collagen-IV. A low protein and gene expression level of E-selectin and tissue factor was detected for all iPSC-ECs and the hCBECs, while a strong upregulation of these markers was noted upon stimulation with TNFα. This was in line with the physiological and strong induction of leukocyte adhesion detected after treatment with TNFα, iPSC-EC and hCBEC monolayers were capable of reducing thrombocyte adhesion and repopulating scratched areas. iPSCs offer the possibility to provide patient-specific ECs in abundant numbers needed to cover all blood contacting surfaces of the BHL with a viable, non-thrombogenic and non-inflammatory monolayer. iPSC-EC clones can differ in terms of their reendothelialization rate, and pro-inflammatory response. However, a less profound inflammatory response may even be advantageous for BHL application. With the proven ability of the seeded iPSC-ECs to reduce thrombocyte adhesion, we expect that thrombotic events that could lead to BHL occlusion can be avoided, and thus, justifies further studies on enabling BHL long-term application.
- Published
- 2021
- Full Text
- View/download PDF
50. Generation of pulmonary arterial hypertension patient-specific induced pluripotent stem cell lines from three unrelated patients with a heterozygous missense mutation in exon 12, a heterozygous in-frame deletion in exon 3 and a missense mutation in exon 11 of the BMPR2 gene.
- Author
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Usman A, Haase A, Merkert S, Göhring G, Hansmann G, Gall H, Schermuly R, Martin U, and Olmer R
- Subjects
- Bone Morphogenetic Protein Receptors, Type II genetics, Exons genetics, Familial Primary Pulmonary Hypertension, Humans, Mutation, Mutation, Missense genetics, Hypertension, Pulmonary genetics, Induced Pluripotent Stem Cells, Pulmonary Arterial Hypertension
- Abstract
Loss-of-function mutations in the bone morphogenetic protein receptor 2 (BMPR2) gene are common in heritable or idiopathic pulmonary arterial hypertension (PAH), and can result in functional impairment of both endothelial and vascular smooth muscle cells. Here, we report 3 PAH patient-specific induced pluripotent stem cells (iPSC) lines from 3 unrelated patients harbouring different mutations in the BMPR2 gene: a heterozygous missense mutation in exon 12, a heterozygous frame shift deletion in exon 3, and a heterozygous missense mutation in exon 11. These cell lines will serve as a valuable resource to model PAH in vitro., (Copyright © 2021 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
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