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21 results on '"Orvain, Céline"'

1. Nitrogen metabolism in the picoalgaePelagomonas calceolata: disentangling cyanate lyase function under different nutrient conditions

Author

Guérin, Nina, primary, Seyman, Chloé, additional, Orvain, Céline, additional, Bertrand, Laurie, additional, Gourvil, Priscillia, additional, Probert, Ian, additional, Vacherie, Benoit, additional, Brun, Élodie, additional, Magdelenat, Ghislaine, additional, Labadie, Karine, additional, Wincker, Patrick, additional, Thurotte, Adrien, additional, and Carradec, Quentin, additional

Published
2024
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3. Towards standards for human fecal sample processing in metagenomic studies

Author

Costea, Paul I, Zeller, Georg, Sunagawa, Shinichi, Pelletier, Eric, Alberti, Adriana, Levenez, Florence, Tramontano, Melanie, Driessen, Marja, Hercog, Rajna, Jung, Ferris-Elias, Kultima, Jens Roat, Hayward, Matthew R, Coelho, Luis Pedro, Allen-Vercoe, Emma, Bertrand, Laurie, Blaut, Michael, Brown, Jillian R M, Carton, Thomas, Cools-Portier, Stéphanie, Daigneault, Michelle, Derrien, Muriel, Druesne, Anne, de Vos, Willem M, Finlay, B Brett, Flint, Harry J, Guarner, Francisco, Hattori, Masahira, Heilig, Hans, Luna, Ruth Ann, van Hylckama Vlieg, Johan, Junick, Jana, Klymiuk, Ingeborg, Langella, Philippe, Le Chatelier, Emmanuelle, Mai, Volker, Manichanh, Chaysavanh, Martin, Jennifer C, Mery, Clémentine, Morita, Hidetoshi, O'Toole, Paul W, Orvain, Céline, Patil, Kiran Raosaheb, Penders, John, Persson, Søren, Pons, Nicolas, Popova, Milena, Salonen, Anne, Saulnier, Delphine, Scott, Karen P, Singh, Bhagirath, Slezak, Kathleen, Veiga, Patrick, Versalovic, James, Zhao, Liping, Zoetendal, Erwin G, Ehrlich, S Dusko, Dore, Joel, and Bork, Peer

Published
2017
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4. Male differentiation in the marine copepod Oithona nana reveals the development of a new nervous ganglion linked to Lin12-Notch-Repeat protein-associated proteolysis

Author

Sugier, Kevin, primary, Laso-Jadart, Romuald, additional, Vacherie, Benoit, additional, Käfer, Jos, additional, Bertrand, Laurie, additional, Orvain, Céline, additional, Martins, Nathalie, additional, Labadie, Karine, additional, Poulain, Julie, additional, Petit, Emmanuelle, additional, Wincker, Patrick, additional, Jamet, Jean-Louis, additional, Alberti, Adriana, additional, and Madoui, Mohammed-Amin, additional

Published
2022
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5. Male Differentiation in the Marine Copepod Oithona nana Reveals the Development of a New Nervous Ganglion and Lin12-Notch-Repeat Protein-Associated Proteolysis

Author

Sugier, Kevin, primary, Laso-Jadart, Romuald, additional, Vacherie, Benoît, additional, Käfer, Jos, additional, Bertrand, Laurie, additional, Labadie, Karine, additional, Martins, Nathalie, additional, Orvain, Céline, additional, Petit, Emmanuelle, additional, Wincker, Patrick, additional, Jamet, Jean-Louis, additional, Alberti, Adriana, additional, and Madoui, Mohammed-Amin, additional

Published
2021
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6. VarGoats project: a dataset of 1159 whole-genome sequences to dissect Capra hircus global diversity

Author

Agence Nationale de la Recherche (France), Région Occitanie / Pyrénées-Méditerranée, Ministère de l’Enseignement supérieur et de la Recherche (France), Biotechnology and Biological Sciences Research Council (UK), Bill & Melinda Gates Foundation, Department for International Development (UK), Center for Tropical Studies and Conservation (US), University of Edinburgh, Scottish Government's Rural and Environment Science and Analytical Services, Denoyelle, Laure, Talouarn, Estelle, Bardou, Philippe, Colli, Licia, Alberti, Adriana, Danchin, Coralie, Del Corvo, Marcello, Engelen, Stefan, Orvain, Céline, Palhière, Isabelle, Rupp, Rachel, Sarry, Julien, Salavati, Mazdak, Amills, Marcel, Clark, Emily, Crepaldi, Paola, Faraut, Thomas, Wandui Masiga, Clet, Pompanon, François, Rosen, Benjamin D., Stella, Alessandra, Van Tassell, Curtis P., Tosser-Klopp, Gwenola, VarGoats Consortium, Agence Nationale de la Recherche (France), Région Occitanie / Pyrénées-Méditerranée, Ministère de l’Enseignement supérieur et de la Recherche (France), Biotechnology and Biological Sciences Research Council (UK), Bill & Melinda Gates Foundation, Department for International Development (UK), Center for Tropical Studies and Conservation (US), University of Edinburgh, Scottish Government's Rural and Environment Science and Analytical Services, Denoyelle, Laure, Talouarn, Estelle, Bardou, Philippe, Colli, Licia, Alberti, Adriana, Danchin, Coralie, Del Corvo, Marcello, Engelen, Stefan, Orvain, Céline, Palhière, Isabelle, Rupp, Rachel, Sarry, Julien, Salavati, Mazdak, Amills, Marcel, Clark, Emily, Crepaldi, Paola, Faraut, Thomas, Wandui Masiga, Clet, Pompanon, François, Rosen, Benjamin D., Stella, Alessandra, Van Tassell, Curtis P., Tosser-Klopp, Gwenola, and VarGoats Consortium

Abstract

[Background]: Since their domestication 10,500 years ago, goat populations with distinctive genetic backgrounds have adapted to a broad variety of environments and breeding conditions. The VarGoats project is an international 1000-genome resequencing program designed to understand the consequences of domestication and breeding on the genetic diversity of domestic goats and to elucidate how speciation and hybridization have modeled the genomes of a set of species representative of the genus Capra., [Findings]: A dataset comprising 652 sequenced goats and 507 public goat sequences, including 35 animals representing eight wild species, has been collected worldwide. We identified 74,274,427 single nucleotide polymorphisms (SNPs) and 13,607,850 insertion-deletions (InDels) by aligning these sequences to the latest version of the goat reference genome (ARS1). A Neighbor-joining tree based on Reynolds genetic distances showed that goats from Africa, Asia and Europe tend to group into independent clusters. Because goat breeds from Oceania and Caribbean (Creole) all derive from imported animals, they are distributed along the tree according to their ancestral geographic origin., [Conclusions]: We report on an unprecedented international effort to characterize the genome-wide diversity of domestic goats. This large range of sequenced individuals represents a unique opportunity to ascertain how the demographic and selection processes associated with post-domestication history have shaped the diversity of this species. Data generated for the project will also be extremely useful to identify deleterious mutations and polymorphisms with causal effects on complex traits, and thus will contribute to new knowledge that could be used in genomic prediction and genome-wide association studies.

Published
2021

7. Male differentiation in the marine copepod Oithona nana reveals the development of a new nervous ganglion linked to Lin12-Notch-Repeat protein-associated proteolysis

Author

Sugier, Kevin, primary, Laso-Jadart, Romuald, additional, Vacherie, Benoit, additional, Käfer, Jos, additional, Bertrand, Laurie, additional, Labadie, Karine, additional, Martins, Nathalie, additional, Orvain, Céline, additional, Petit, Emmanuelle, additional, Poulain, Julie, additional, Wincker, Patrick, additional, Jamet, Jean-Louis, additional, Alberti, Adriana, additional, and Madoui, Mohammed-Amin, additional

Published
2021
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8. VarGoats project: a dataset of 1159 whole-genome sequences to dissect Capra hircus global diversity.

Author

Denoyelle, Laure, Talouarn, Estelle, Bardou, Philippe, Colli, Licia, Alberti, Adriana, Danchin, Coralie, Del Corvo, Marcello, Engelen, Stéfan, Orvain, Céline, Palhière, Isabelle, Rupp, Rachel, Sarry, Julien, Salavati, Mazdak, Amills, Marcel, Clark, Emily, Crepaldi, Paola, Faraut, Thomas, Masiga, Clet Wandui, Pompanon, François, and Rosen, Benjamin D.

Subjects
GOATS, GENOME-wide association studies, GOAT breeds, GENETIC variation, GENETIC distance, SINGLE nucleotide polymorphisms
Abstract

Background: Since their domestication 10,500 years ago, goat populations with distinctive genetic backgrounds have adapted to a broad variety of environments and breeding conditions. The VarGoats project is an international 1000-genome resequencing program designed to understand the consequences of domestication and breeding on the genetic diversity of domestic goats and to elucidate how speciation and hybridization have modeled the genomes of a set of species representative of the genus Capra. Findings: A dataset comprising 652 sequenced goats and 507 public goat sequences, including 35 animals representing eight wild species, has been collected worldwide. We identified 74,274,427 single nucleotide polymorphisms (SNPs) and 13,607,850 insertion-deletions (InDels) by aligning these sequences to the latest version of the goat reference genome (ARS1). A Neighbor-joining tree based on Reynolds genetic distances showed that goats from Africa, Asia and Europe tend to group into independent clusters. Because goat breeds from Oceania and Caribbean (Creole) all derive from imported animals, they are distributed along the tree according to their ancestral geographic origin. Conclusions: We report on an unprecedented international effort to characterize the genome-wide diversity of domestic goats. This large range of sequenced individuals represents a unique opportunity to ascertain how the demographic and selection processes associated with post-domestication history have shaped the diversity of this species. Data generated for the project will also be extremely useful to identify deleterious mutations and polymorphisms with causal effects on complex traits, and thus will contribute to new knowledge that could be used in genomic prediction and genome-wide association studies. [ABSTRACT FROM AUTHOR]

Published
2021
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9. Coming and ceasing to be: Evolution of recent mutualistic associations in aphid endosymbionts

Author

Manzano-Marin, Alejandro, Coeur D'Acier, Armelle, Clamens, Anne Laure, Orvain, Céline, Cruaud, Corinne, Barbe, Valérie, Jousselin, Emmanuelle, Centre de Biologie pour la Gestion des Populations (UMR CBGP), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Université de Montpellier (UM)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Institut de Biologie François Jacob - GENOSCOPE, Partenaires INRAE, European Society of Evolutionnary Biology (ESEB). INT., and Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)

Subjects
[SDV]Life Sciences [q-bio], [SDE]Environmental Sciences, ComputingMilieux_MISCELLANEOUS
Abstract

National audience

Published
2018

10. The coming and going of mutualistic symbionts: The ins and outs of co-obligate endosymbiont replacement in Cinara aphids

Author

Manzano-Marin, Alejandro, Coeur d'Acier, Armelle, Clamens, Anne Laure, Orvain, Céline, Cruaud, Corinne, Barbe, Valérie, Jousselin, Emmanuelle, Centre de Biologie pour la Gestion des Populations (UMR CBGP), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Université de Montpellier (UM)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), and Society for molecular biology and evolution (SMBE). USA.

Subjects
[SDV.BA]Life Sciences [q-bio]/Animal biology, fungi, food and beverages, biochemical phenomena, metabolism, and nutrition
Abstract

International audience; Nutritional-based mutualistic associations between microorganisms and insects with unbalanced diets is pervasive, with several insects having developed obligate associations with either bacterial or fungal symbionts. The last common ancestor of Cinara aphids (Hemiptera: Aphididae) harboured two obligate nutritional endosymbionts: Buchnera (the primary obligate endosymbiont of most aphids) and most probably a Serratia symbiotica. The latter shows a very dynamic pattern of replacement by different bacterial taxa, thus offering a special opportunity to study the turnover of obligate mutualistic associations. We have assembled the endosymbionts' genomes from over 60 species of Cinara. We found that most secondary co-obligate endosymbionts belong to taxa commonly associated to aphids as facultative endosymbionts, hinting at the origin of these lineages. Also, we observed common patterns of genome reduction and convergence in metabolic pathway retention. Within a group of Erwinia-associated aphids, horizontal transfer of B-vitamin-biosynthetic genes between endosymbiotic lineages has played an important role in the establishment of the new mutualistic associations. Finally, in the species Cinara strobi, we found that while the species has already acquired a new co-obligate symbiont, it retains the former S. symbiotica symbiont. It keeps a large but highly degenerated genome and has become unable to biosynthetise all B vitamins and essential amino acids, rendering it unable to fulfil its mutualistic role. In brief, the results provided by analysing the genomes of these obligate di- and tri-symbiotic consortia are illuminating the different processes involved in the evolution (from birth to death) of new obligate mutualistic associations between

Published
2018

11. Ongoing Symbiont Replacement in the Aphid Cinara strobi

Author

Manzano-Marin, Alejandro, Coeur d'Acier, Armelle, Clamens, Anne Laure, Orvain, Céline, Cruaud, Corinne, Barbe, Valérie, Jousselin, Emmanuelle, Centre de Biologie pour la Gestion des Populations (UMR CBGP), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Université de Montpellier (UM)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), and Commissariat à l'énergie atomique et aux énergies alternatives (CEA)

Subjects
[SDV.BA]Life Sciences [q-bio]/Animal biology, ComputingMilieux_MISCELLANEOUS
Abstract

National audience

Published
2018

14. Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

Author

Massachusetts Institute of Technology. Department of Earth, Atmospheric, and Planetary Sciences, Duhaime, Melissa, Romac, Sarah, Alberti, Adriana, Poulain, Julie, Engelen, Stefan, Labadie, Karine, Ferrera, Isabel, Albini, Guillaume, Aury, Jean-Marc, Belser, Caroline, Bertrand, Alexis, Cruaud, Corinne, Da Silva, Corinne, Dossat, Carole, Gavory, Frédérick, Gas, Shahinaz, Guy, Julie, Haquelle, Maud, Jacoby, E'krame, Jaillon, Olivier, Lemainque, Arnaud, Pelletier, Eric, Samson, Gaëlle, Wessner, Mark, Bazire, Pascal, Beluche, Odette, Bertrand, Laurie, Besnard-Gonnet, Marielle, Bordelais, Isabelle, Boutard, Magali, Dubois, Maria, Dumont, Corinne, Ettedgui, Evelyne, Fernandez, Patricia, Garcia, Espérance, Aiach, Nathalie Giordanenco, Guerin, Thomas, Hamon, Chadia, Brun, Elodie, Lebled, Sandrine, Lenoble, Patricia, Louesse, Claudine, Mahieu, Eric, Mairey, Barbara, Martins, Nathalie, Megret, Catherine, Milani, Claire, Muanga, Jacqueline, Orvain, Céline, Payen, Emilie, Perroud, Peggy, Petit, Emmanuelle, Robert, Dominique, Ronsin, Murielle, Vacherie, Benoit, Acinas, Silvia G., Royo-Llonch, Marta, Cornejo-Castillo, Francisco M., Logares, Ramiro, Fernández-Gómez, Beatriz, Bowler, Chris, Cochrane, Guy, Amid, Clara, Hoopen, Petra Ten, De Vargas, Colomban, Grimsley, Nigel, Desgranges, Elodie, Kandels-Lewis, Stefanie, Ogata, Hiroyuki, Poulton, Nicole, Sieracki, Michael E., Stepanauskas, Ramunas, Sullivan, Matthew B., Brum, Jennifer R., Poulos, Bonnie T., Hurwitz, Bonnie L., Bork, Peer, Boss, Emmanuel, Follows, Michael, Gorsky, Gabriel, Hingamp, Pascal, Iudicone, Daniele, Karp-Boss, Lee, Karsenti, Eric, Not, Fabrice, Pesant, Stéphane, Raes, Jeroen, Sardet, Christian, Speich, Sabrina, Stemmann, Lars, Sunagawa, Shinichi, Wincker, Patrick, Massachusetts Institute of Technology. Department of Earth, Atmospheric, and Planetary Sciences, Duhaime, Melissa, Romac, Sarah, Alberti, Adriana, Poulain, Julie, Engelen, Stefan, Labadie, Karine, Ferrera, Isabel, Albini, Guillaume, Aury, Jean-Marc, Belser, Caroline, Bertrand, Alexis, Cruaud, Corinne, Da Silva, Corinne, Dossat, Carole, Gavory, Frédérick, Gas, Shahinaz, Guy, Julie, Haquelle, Maud, Jacoby, E'krame, Jaillon, Olivier, Lemainque, Arnaud, Pelletier, Eric, Samson, Gaëlle, Wessner, Mark, Bazire, Pascal, Beluche, Odette, Bertrand, Laurie, Besnard-Gonnet, Marielle, Bordelais, Isabelle, Boutard, Magali, Dubois, Maria, Dumont, Corinne, Ettedgui, Evelyne, Fernandez, Patricia, Garcia, Espérance, Aiach, Nathalie Giordanenco, Guerin, Thomas, Hamon, Chadia, Brun, Elodie, Lebled, Sandrine, Lenoble, Patricia, Louesse, Claudine, Mahieu, Eric, Mairey, Barbara, Martins, Nathalie, Megret, Catherine, Milani, Claire, Muanga, Jacqueline, Orvain, Céline, Payen, Emilie, Perroud, Peggy, Petit, Emmanuelle, Robert, Dominique, Ronsin, Murielle, Vacherie, Benoit, Acinas, Silvia G., Royo-Llonch, Marta, Cornejo-Castillo, Francisco M., Logares, Ramiro, Fernández-Gómez, Beatriz, Bowler, Chris, Cochrane, Guy, Amid, Clara, Hoopen, Petra Ten, De Vargas, Colomban, Grimsley, Nigel, Desgranges, Elodie, Kandels-Lewis, Stefanie, Ogata, Hiroyuki, Poulton, Nicole, Sieracki, Michael E., Stepanauskas, Ramunas, Sullivan, Matthew B., Brum, Jennifer R., Poulos, Bonnie T., Hurwitz, Bonnie L., Bork, Peer, Boss, Emmanuel, Follows, Michael, Gorsky, Gabriel, Hingamp, Pascal, Iudicone, Daniele, Karp-Boss, Lee, Karsenti, Eric, Not, Fabrice, Pesant, Stéphane, Raes, Jeroen, Sardet, Christian, Speich, Sabrina, Stemmann, Lars, Sunagawa, Shinichi, and Wincker, Patrick

Abstract

A unique collection of oceanic samples was gathered by the Tara Oceans expeditions (2009-2013), targeting plankton organisms ranging from viruses to metazoans, and providing rich environmental context measurements. Thanks to recent advances in the field of genomics, extensive sequencing has been performed for a deep genomic analysis of this huge collection of samples. A strategy based on different approaches, such as metabarcoding, metagenomics, single-cell genomics and metatranscriptomics, has been chosen for analysis of size-fractionated plankton communities. Here, we provide detailed procedures applied for genomic data generation, from nucleic acids extraction to sequence production, and we describe registries of genomics datasets available at the European Nucleotide Archive (ENA, www.ebi.ac.uk/ena). The association of these metadata to the experimental procedures applied for their generation will help the scientific community to access these data and facilitate their analysis. This paper complements other efforts to provide a full description of experiments and open science resources generated from the Tara Oceans project, further extending their value for the study of the world's planktonic ecosystems.

Published
2018

15. Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

Author

Alberti, Adriana, Poulain, Julie, Engelen, Stefan, Labadie, Karine, Romac, Sarah, Ferrera, Isabel, Albini, Guillaume, Aury, Jean-Marc, Belser, Caroline, Bertrand, Alexis, Cruaud, Corinne, Da Silva, Corinne, Dossat, Carole, Gavory, Frédérick, Gas, Shahinaz, Guy, Guy, Haquelle, Maud, Jacoby, E'krame, Jaillon, Olivier, Lemainque, Arnaud, Pelletier, Eric, Samson, Gaëlle, Wessner, Mark, Bazire, Pascal, Beluche, Odette, Bertrand, Laurie, Besnard-Gonnet, Marielle, Bordelais, Isabelle, Boutard, Magali, Dubois, Maria, Dumont, Corinne, Ettedgui, Evelyne, Fernandez, Patricia, Garcia, Espérance, Aiach, Nathalie, Guerin, Thomas, Hamon, Chadia, Brun, Élodie, Lebled, Sandrine, Lenoble, Patricia, Louesse, Claudine, Mahieu, Eric, Mairey, Barbara, Martins, Nathalie, Megret, Catherine, Milani, Claire, Muanga, Jacqueline, Orvain, Céline, Payen, Emilie, Perroud, Peggy, Petit, Emmanuel, Robert, Dominique, Ronsin, Murielle, Vacherie, Benoit, Acinas, Silvia, Royo-Llonch, Marta, Cornejo-Castillo, Francisco, Logares, Ramiro, Fernández-Gómez, Beatriz, Bowler, Chris, Cochrane, Guy, Amid, Clara, Hoopen, Petra Ten, de Vargas, Colomban, Grimsley, Nigel, Desgranges, Elodie, Kandels-Lewis, Stefanie, Ogata, Hiroyuki, Poulton, Nicole, Sieracki, Michael, Stepanauskas, Ramunas, Sullivan, Matthew, Brum, Jennifer, Duhaime, Melissa, Poulos, Bonnie, Hurwitz, Bonnie, Bork, Peer, Boss, Emmanuel, Follows, Michael, Gorsky, Gabriel, Hingamp, Pascal, Iudicone, Daniele, Karp-Boss, Lee, Karsenti, Eric, Not, Fabrice, Pesant, Stéphane, Raes, Jeroen, Sardet, Christian, Speich, Sabrina, Stemmann, Lars, Sunagawa, Shinichi, Wincker, Patrick, CNS, Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Institut de Génomique d'Evry (IG), Université Paris-Saclay-Institut de Biologie François JACOB (JACOB), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Evolution des Protistes et Ecosystèmes Pélagiques (EPEP), Adaptation et diversité en milieu marin (AD2M), Station biologique de Roscoff [Roscoff] (SBR), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff [Roscoff] (SBR), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Institute of Marine Sciences / Institut de Ciències del Mar [Barcelona] (ICM), Consejo Superior de Investigaciones Científicas [Madrid] (CSIC), Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Institut de Recherches sur les lois Fondamentales de l'Univers (IRFU), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay, Unité Mathématique Informatique et Génome (MIG), Institut National de la Recherche Agronomique (INRA), Centre National de Génotypage (CNG), Universidad Politécnica de Madrid (UPM), Structure et évolution des génomes (SEG), CNS-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS), Université de Toulon - Faculté de Droit de Toulon (UTLN UFR Droit), Université de Toulon (UTLN), Actilia Multimedia, Pharmacochimie et Biologie pour le Développement (PHARMA-DEV), Institut de Recherche pour le Développement (IRD)-Institut de Chimie de Toulouse (ICT), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT), Biologie des Plantes et Innovation - UR UPJV 3900 (BIOPI), Université de Picardie Jules Verne (UPJV)-Transfrontalière BioEcoAgro - UMR 1158 (BioEcoAgro), Université d'Artois (UA)-Université de Liège-Université de Picardie Jules Verne (UPJV)-Université du Littoral Côte d'Opale (ULCO)-Université de Lille-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-JUNIA (JUNIA), Université catholique de Lille (UCL)-Université catholique de Lille (UCL)-Université d'Artois (UA)-Université de Liège-Université du Littoral Côte d'Opale (ULCO)-Université de Lille-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-JUNIA (JUNIA), Université catholique de Lille (UCL)-Université catholique de Lille (UCL), Grande Rue, Auteur indépendant, Institut de biologie de l'ENS Paris (IBENS), Département de Biologie - ENS Paris, École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), European Bioinformatics Institute [Hinxton] (EMBL-EBI), EMBL Heidelberg, Informatics Department, Wellcome Trust Genome Campus, The Wellcome Trust Sanger Institute [Cambridge], Biologie intégrative des organismes marins (BIOM), Observatoire océanologique de Banyuls (OOB), European Molecular Biology Laboratory [Heidelberg] (EMBL), Bigelow Laboratory for Ocean Sciences, University of Arizona, Ecology and Evolutionary Biology [Tucson] (EEB), European Molecular Biology Laboratory, School of Marine Sciences, University of Maine, Department of Earth, Atmospheric and Planetary Sciences [MIT, Cambridge] (EAPS), Massachusetts Institute of Technology (MIT), Laboratoire d'océanographie de Villefranche (LOV), Observatoire océanologique de Villefranche-sur-mer (OOVM), Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Institut méditerranéen d'océanologie (MIO), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS), Stazione Zoologica Anton Dohrn (SZN), Diversité et Interactions au sein du Plancton Océanique (DIPO), Center for Marine Environmental Sciences [Bremen] (MARUM), Universität Bremen, Department of Bioscience Engineering, Vrije Universiteit Brussel (VUB), Groupe de Biologie Marine du CEA, Laboratoire de physique des océans (LPO), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS), Commissariat à l'Energie Atomique, Institut de Biologie François JACOB (JACOB), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay, Informatique, Biologie Intégrative et Systèmes Complexes (IBISC), Centre National de la Recherche Scientifique (CNRS)-Université d'Évry-Val-d'Essonne (UEVE), Adaptation et diversité en milieu marin (ADMM), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff [Roscoff] (SBR), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff [Roscoff] (SBR), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Consejo Superior de Investigaciones Científicas [Spain] (CSIC), Commissariat à l'Énergie Atomique et aux Énergies Alternatives (CEA) - Grenoble, LIttoral ENvironnement et Sociétés - UMR 7266 (LIENSs), Université de La Rochelle (ULR)-Centre National de la Recherche Scientifique (CNRS), Institut de Recherche pour le Développement (IRD)-Institut de Chimie de Toulouse (ICT-FR 2599), Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS), EA 3900 BIOPI Laboratoire de Phytotechnologie, Université de Picardie Jules Verne (UPJV), Institut de biologie de l'ENS Paris (UMR 8197/1024) (IBENS), École normale supérieure - Paris (ENS Paris)-École normale supérieure - Paris (ENS Paris)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Observatoire océanologique de Banyuls (OOB), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS), Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire océanologique de Villefranche-sur-mer (OOVM), Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS), Stazione Zoologica Anton Dohrn, Vrije Universiteit [Brussels] (VUB), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Institut de Chimie du CNRS (INC)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Institut de Chimie du CNRS (INC), Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Département de Biologie - ENS Paris, École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), and Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)

Subjects
[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], ComputingMilieux_MISCELLANEOUS
Abstract

International audience

Published
2017

16. Joining the team: Co-obligate symbionts of aphids evolving from distantly related bacteria

Author

Manzano-Marin, Alejandro, Coeur D'Acier, Armelle, Clamens, Anne Laure, Orvain, Céline, Cruaud, Corinne, Barbe, Valérie, Jousselin, Emmanuelle, Centre de Biologie pour la Gestion des Populations (UMR CBGP), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Université de Montpellier (UM)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), and Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)

Subjects
[SDV.BA]Life Sciences [q-bio]/Animal biology, ComputingMilieux_MISCELLANEOUS
Abstract

International audience

Published
2017

17. The newcomers: distantly related bacteria have settled as co-obligate symbionts in aphids

Author

Manzano-Marin, Alejandro, Coeur D'Acier, Armelle, Orvain, Céline, Cruaud, Corinne, Barbe, Valérie, Jousselin, Emmanuelle, Centre de Biologie pour la Gestion des Populations (UMR CBGP), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Université de Montpellier (UM)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), and Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)

Subjects
[SDV.BA]Life Sciences [q-bio]/Animal biology, ComputingMilieux_MISCELLANEOUS
Abstract

National audience

Published
2017

20. BAC ends library generation for Illumina sequencing

Author

ALBERTI, ADRIANA, primary, Briñas, Laura, additional, Orvain, Céline, additional, Belser, Caroline, additional, Cruaud, Corinne, additional, Labadie, Karine, additional, Bertrand, Laurie, additional, Barbe, Valerie, additional, Aury, Jean-Marc, additional, Wincker, Patrick, additional, and Alberti, Adriana, additional

Published
2015
Full Text
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21. Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data

Author

Alberti, Adriana, primary, Belser, Caroline, additional, Engelen, Stéfan, additional, Bertrand, Laurie, additional, Orvain, Céline, additional, Brinas, Laura, additional, Cruaud, Corinne, additional, Giraut, Laurène, additional, Da Silva, Corinne, additional, Firmo, Cyril, additional, Aury, Jean-Marc, additional, and Wincker, Patrick, additional

Published
2014
Full Text
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