277 results on '"Ou, Hong-Yu"'
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2. Mobilizable plasmids drive the spread of antimicrobial resistance genes and virulence genes in Klebsiella pneumoniae
3. SecReT6 update: a comprehensive resource of bacterial Type VI Secretion Systems
4. RES-Xre toxin-antitoxin locus knaAT maintains the stability of the virulence plasmid in Klebsiella pneumoniae
5. ICEO, a biological ontology for representing and analyzing bacterial integrative and conjugative elements
6. Identification of Type II Toxin-Antitoxin Loci in Levilactobacillus brevis
7. Mobilization of the nonconjugative virulence plasmid from hypervirulent Klebsiella pneumoniae
8. DeepSecE: a Deep Learning-based Framework for Multi-class Prediction of Secreted Proteins in Gram-negative Bacteria
9. CpxR promotes the carbapenem antibiotic resistance of Klebsiella pneumoniae by directly regulating the expression and the dissemination of bla KPC on the IncFII conjugative plasmid
10. TADB 3.0: an updated database of bacterial toxin–antitoxin loci and associated mobile genetic elements.
11. ICEberg 3.0: functional categorization and analysis of the integrative and conjugative elements in bacteria.
12. CpxR promotes the carbapenem antibiotic resistance of Klebsiella pneumoniae by directly regulating the expression and the dissemination of blaKPC on the IncFII conjugative plasmid.
13. Comparative Analysis of CRISPR Loci Found in Streptomyces Genome Sequences
14. Antibiotic-induced degradation of antitoxin enhances the transcription of acetyltransferase-type toxin-antitoxin operon
15. Formation of an Angular Aromatic Polyketide from a Linear Anthrene Precursor via Oxidative Rearrangement
16. SecReT6 update: a comprehensive resource of bacterial Type VI Secretion Systems
17. Comparative Analysis of Diverse Acetyltransferase-Type Toxin-Antitoxin Loci in Klebsiella pneumoniae
18. Transmission of Nonconjugative Virulence or Resistance Plasmids Mediated by a Self-Transferable IncN3 Plasmid from Carbapenem-Resistant Klebsiella pneumoniae
19. Type II Toxin-Antitoxin Loci: Phylogeny
20. VRprofile2: detection of antibiotic resistance-associated mobilome in bacterial pathogens
21. Prediction of Type II Toxin-Antitoxin Loci in Klebsiella pneumoniae Genome Sequences
22. Identification and characterization of a central replication origin of the mega-plasmid pSCATT of Streptomyces cattleya
23. Bacterial YedK represses plasmid DNA replication and transformation through its DNA single-strand binding activity
24. Identification of Type II Toxin-Antitoxin Loci in Levilactobacillus brevis
25. T4SEfinder: a bioinformatics tool for genome-scale prediction of bacterial type IV secreted effectors using pre-trained protein language model
26. Genetic diversity and evolution of the virulence plasmids encoding aerobactin and salmochelin in Klebsiella pneumoniae
27. SecReT6: a web-based resource for type VI secretion systems found in bacteria
28. Recognition and cleavage of 5-methylcytosine DNA by bacterial SRA-HNH proteins
29. Additional file 2 of Mobilization of the nonconjugative virulence plasmid from hypervirulent Klebsiella pneumoniae
30. The pheV Phenylalanine tRNA Gene in Klebsiella pneumoniae Clinical Isolates Is an Integration Hotspot for Possible Niche-Adaptation Genomic Islands
31. Role and regulation of fatty acid biosynthesis in the response of Shewanella piezotolerans WP3 to different temperatures and pressures
32. Translational Genomics to Develop a Salmonella enterica Serovar Paratyphi A Multiplex Polymerase Chain Reaction Assay
33. Type II Toxin-Antitoxin Loci: Phylogeny
34. SecReT4: a web-based bacterial type IV secretion system resource
35. ArrayOme- and tRNAcc-Facilitated Mobilome Discovery: Comparative Genomics Approaches for Identifying Rich Veins of Bacterial Novel DNA Sequences
36. T4SEfinder: a bioinformatics tool for genome-scale prediction of bacterial type IV secreted effectors using pre-trained protein language model.
37. ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria
38. TADB: a web-based resource for Type 2 toxin–antitoxin loci in bacteria and archaea
39. Comparative Analysis of AbaR-Type Genomic Islands Reveals Distinct Patterns of Genetic Features in Elements with Different Backbones
40. Absence of the type I-E CRISPR-Cas system in Klebsiella pneumoniae clonal complex 258 is associated with dissemination of IncF epidemic resistance plasmids in this clonal complex
41. mGenomeSubtractor: a web-based tool for parallel in silico subtractive hybridization analysis of multiple bacterial genomes
42. ATPase genes of diverse multidrug-resistant Acinetobacter baumannii isolates frequently harbour integrated DNA
43. Analysis of a genomic island housing genes for DNA S-modification system in Streptomyces lividans 66 and its counterparts in other distantly related bacteria
44. MobilomeFINDER: web-based tools for in silico and experimental discovery of bacterial genomic islands
45. A novel strategy for the identification of genomic islands by comparative analysis of the contents and contexts of tRNA sites in closely related bacteria
46. ArrayOme: a program for estimating the sizes of microarray-visualized bacterial genomes
47. DEG: a database of essential genes
48. The Z curve database: a graphic representation of genome sequences
49. ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes
50. Characterization of a novel chaperone/usher fimbrial operon present on KpGI-5, a methionine tRNA gene-associated genomic island in Klebsiella pneumoniae
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