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3. Multi-locus phylogenies revealed a new record of Entoloma species (Basidiomycota, Agaricales) responsible for gastrointestinal poisoning

Author

Parnmen, Sittiporn, primary, Nooron, Nattakarn, additional, Tacharoenmuang, Ratana, additional, Sikaphan, Sujitra, additional, Polputpisatkul, Dutsadee, additional, Uttawichai, Chutimon, additional, Naksuwankul, Khwanruan, additional, Pringsulaka, Onanong, additional, Binchai, Sutheewan, additional, and Rangsiruji, Achariya, additional

Published
2024
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5. Genetic polymorphism of divalent metal transporter 1 gene intronic IVS4+44C/A in cadmium exposed population

Author

parnmen, Sittiporn, primary, Nooron, Nattakarn, additional, Chonnakijkul, Pornpanna, additional, Sikaphan, Sujitra, additional, Polputpisatkul, Dutsadee, additional, Uttawichai, Chutimon, additional, Chankunasuka, Rungsaeng, additional, Phatsarapongkul, Sriprapa, additional, Thunkhamrak, Chidkamon, additional, Nitma, Unchalee, additional, Palakul, Nisakorn, additional, and Rojanawiwat, Archawin, additional

Published
2023
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6. Phylogenetic evidence revealed Cantharocybe virosa(Agaricales, Hygrophoraceae) as a new clinical record for gastrointestinal mushroom poisoning in Thailand

Author

Parnmen, Sittiporn, Nooron, Nattakarn, Leudang, Siriwan, Sikaphan, Sujitra, Polputpisatkul, Dutsadee, and Rangsiruji, Achariya

Abstract

Epidemiological data showed increasing incidence rates of gastrointestinal (GI) mushroom syndrome in Thailand. This study therefore, aimed to identify suspected GI toxin-containing mushrooms using DNA sequence analyses of the internal transcribed spacer (ITS) region and the large subunit (LSU) of nuclear ribosomal DNA. GI toxins were also identified using liquid chromatography quadrupole time-of-flight mass spectrometry (LC-QTOF-MS). 39 patients presented with poisoning symptoms, including nausea, vomiting, fatigue, abdominal pain, circulatory disturbances and diarrhea after ingesting wild mushrooms. The latent periods varied from 30 min to 4 h, but mostly between 1 and 2 h. Results of the ITS sequence-based identification revealed high similarities for the obtained clinical mushroom samples with the genus CantharocybeH.E. Bigelow & A.H. SM. Maximum likelihood and Bayesian summary trees of combined ITS and LSU data confirmed that these toxic mushroom samples ingested by the patients belonged to Cantharocybe virosa(Manim. & K.B. Vrinda) T.K.A. Kumar. Detection of GI toxins using LC-QTOF-MS method revealed the presence of coprine in C. virosa. This study described the first outbreak of C. virosapoisoning in Thailand which resulted in severe cases of gastrointestinal irritation. To prevent such poisoning cases it is essential to educate the public not to gather any unidentified or unfamiliar wild mushrooms.

Published
2024
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11. Figure 1 from: Phraphuchamnong P, Nelsen MP, Distefano I, Mercado-Diaz JA, Parnmen S, Rangsiruji A, Buaruang K, Lücking R, Lumbsch HT (2022) A new species of Megalaria (Ramalinaceae, Ascomycota) from Thailand, and recognition of subgenus Catillochroma. MycoKeys 93: 149-163. https://doi.org/10.3897/mycokeys.93.90962

Author

Phraphuchamnong, Phimpisa, primary, Nelsen, Matthew P., additional, Distefano, Isabel, additional, Mercado-Diaz, Joel A., additional, Parnmen, Sittiporn, additional, Rangsiruji, Achariya, additional, Buaruang, Kawinnat, additional, Lücking, Robert, additional, and Lumbsch, H. Thorsten, additional

Published
2022
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12. Figure 2 from: Phraphuchamnong P, Nelsen MP, Distefano I, Mercado-Diaz JA, Parnmen S, Rangsiruji A, Buaruang K, Lücking R, Lumbsch HT (2022) A new species of Megalaria (Ramalinaceae, Ascomycota) from Thailand, and recognition of subgenus Catillochroma. MycoKeys 93: 149-163. https://doi.org/10.3897/mycokeys.93.90962

Author

Phraphuchamnong, Phimpisa, primary, Nelsen, Matthew P., additional, Distefano, Isabel, additional, Mercado-Diaz, Joel A., additional, Parnmen, Sittiporn, additional, Rangsiruji, Achariya, additional, Buaruang, Kawinnat, additional, Lücking, Robert, additional, and Lumbsch, H. Thorsten, additional

Published
2022
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14. Fungal diversity notes 253–366: taxonomic and phylogenetic contributions to fungal taxa

Author

Li, Guo Jie, Hyde, Kevin D., Zhao, Rui Lin, Hongsanan, Sinang, Abdel-Aziz, Faten Awad, Abdel-Wahab, Mohamed A., Alvarado, Pablo, Alves-Silva, Genivaldo, Ammirati, Joseph F., Ariyawansa, Hiran A., Baghela, Abhishek, Bahkali, Ali Hassan, Beug, Michael, Bhat, D. Jayarama, Bojantchev, Dimitar, Boonpratuang, Thitiya, Bulgakov, Timur S., Camporesi, Erio, Boro, Marcela C., Ceska, Oldriska, Chakraborty, Dyutiparna, Chen, Jia Jia, Chethana, K. W. Thilini, Chomnunti, Putarak, Consiglio, Giovanni, Cui, Bao Kai, Dai, Dong Qin, Dai, Yu Cheng, Daranagama, Dinushani A., Das, Kanad, Dayarathne, Monika C., De Crop, Eske, De Oliveira, Rafael J. V., de Souza, Carlos Alberto Fragoso, de Souza, José I., Dentinger, Bryn T. M., Dissanayake, Asha J., Doilom, Mingkwan, Drechsler-Santos, E. Ricardo, Ghobad-Nejhad, Masoomeh, Gilmore, Sean P., Góes-Neto, Aristóteles, Gorczak, Michał, Haitjema, Charles H., Hapuarachchi, Kalani Kanchana, Hashimoto, Akira, He, Mao Qiang, Henske, John K., Hirayama, Kazuyuki, Iribarren, Maria J., Jayasiri, Subashini C., Jayawardena, Ruvishika S., Jeon, Sun Jeong, Jerônimo, Gustavo H., Jesus, Ana L., Jones, E. B. Gareth, Kang, Ji Chuan, Karunarathna, Samantha C., Kirk, Paul M., Konta, Sirinapa, Kuhnert, Eric, Langer, Ewald, Lee, Haeng Sub, Lee, Hyang Burm, Li, Wen Jing, Li, Xing Hong, Liimatainen, Kare, Lima, Diogo Xavier, Lin, Chuan Gen, Liu, Jian Kui, Liu, Xings Zhong, Liu, Zuo Yi, Luangsa-ard, J. Jennifer, Lücking, Robert, Lumbsch, H. Thorsten, Lumyong, Saisamorn, Leaño, Eduardo M., Marano, Agostina V., Matsumura, Misato, McKenzie, Eric H. C., Mongkolsamrit, Suchada, Mortimer, Peter E., Nguyen, Thi Thuong Thuong, Niskanen, Tuula, Norphanphoun, Chada, O’Malley, Michelle A., Parnmen, Sittiporn, Pawłowska, Julia, Perera, Rekhani H., Phookamsak, Rungtiwa, Phukhamsakda, Chayanard, Pires-Zottarelli, Carmen L. A., Raspé, Olivier, Reck, Mateus A., Rocha, Sarah C. O., de Santiago, André L. C. M. A., Senanayake, Indunil C., Setti, Ledo, Shang, Qiu Ju, Singh, Sanjay K., Sir, Esteban B., Solomon, Kevin V., Song, Jie, Srikitikulchai, Prasert, Stadler, Marc, Suetrong, Satinee, Takahashi, Hayato, Takahashi, Takumasa, Tanaka, Kazuaki, Tang, Li Ping, Thambugala, Kasun M., Thanakitpipattana, Donnaya, Theodorou, Michael K., Thongbai, Benjarong, Thummarukcharoen, Tuksaporn, Tian, Qing, Tibpromma, Saowaluck, Verbeken, Annemieke, Vizzini, Alfredo, Vlasák, Josef, Voigt, Kerstin, Wanasinghe, Dhanushka N., Wang, Yong, Weerakoon, Gothamie, Wen, Hua An, Wen, Ting Chi, Wijayawardene, Nalin N., Wongkanoun, Sarunyou, Wrzosek, Marta, Xiao, Yuan Pin, Xu, Jian Chu, Yan, Ji Ye, Yang, Jing, Da Yang, Shu, Hu, Yu, Zhang, Jin Feng, Zhao, Jie, Zhou, Li Wei, Peršoh, Derek, Phillips, Alan J. L., and Maharachchikumbura, Sajeewa S. N.

Published
2016
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15. Fungal diversity notes 111–252—taxonomic and phylogenetic contributions to fungal taxa

Author

Ariyawansa, Hiran A., Hyde, Kevin D., Jayasiri, Subashini C., Buyck, Bart, Chethana, K. W. Thilini, Dai, Dong Qin, Dai, Yu Cheng, Daranagama, Dinushani A., Jayawardena, Ruvishika S., Lücking, Robert, Ghobad-Nejhad, Masoomeh, Niskanen, Tuula, Thambugala, Kasun M., Voigt, Kerstin, Zhao, Rui Lin, Li, Guo-Jie, Doilom, Mingkwan, Boonmee, Saranyaphat, Yang, Zhu L., Cai, Qing, Cui, Yang-Yang, Bahkali, Ali H., Chen, Jie, Cui, Bao Kai, Chen, Jia Jia, Dayarathne, Monika C., Dissanayake, Asha J., Ekanayaka, Anusha H., Hashimoto, Akira, Hongsanan, Sinang, Jones, E. B. Gareth, Larsson, Ellen, Li, Wen Jing, Li, Qi-Rui, Liu, Jian Kui, Luo, Zong Long, Maharachchikumbura, Sajeewa S. N., Mapook, Ausana, McKenzie, Eric H. C., Norphanphoun, Chada, Konta, Sirinapa, Pang, Ka Lai, Perera, Rekhani H., Phookamsak, Rungtiwa, Phukhamsakda, Chayanard, Pinruan, Umpava, Randrianjohany, Emile, Singtripop, Chonticha, Tanaka, Kazuaki, Tian, Cheng Ming, Tibpromma, Saowaluck, Abdel-Wahab, Mohamed A., Wanasinghe, Dhanushka N., Wijayawardene, Nalin N., Zhang, Jin-Feng, Zhang, Huang, Abdel-Aziz, Faten A., Wedin, Mats, Westberg, Martin, Ammirati, Joseph F., Bulgakov, Timur S., Lima, Diogo X., Callaghan, Tony M., Callac, Philipp, Chang, Cheng-Hao, Coca, Luis F., Dal-Forno, Manuela, Dollhofer, Veronika, Fliegerová, Kateřina, Greiner, Katrin, Griffith, Gareth W., Ho, Hsiao-Man, Hofstetter, Valerie, Jeewon, Rajesh, Kang, Ji Chuan, Wen, Ting-Chi, Kirk, Paul M., Kytövuori, Ilkka, Lawrey, James D., Xing, Jia, Li, Hong, Liu, Zou Yi, Liu, Xing Zhong, Liimatainen, Kare, Lumbsch, H. Thorsten, Matsumura, Misato, Moncada, Bibiana, Nuankaew, Salilaporn, Parnmen, Sittiporn, de Azevedo Santiago, André L. C. M., Sommai, Sujinda, Song, Yu, de Souza, Carlos A. F., de Souza-Motta, Cristina M., Su, Hong Yan, Suetrong, Satinee, Wang, Yong, Wei, Syuan-Fong, Wen, Ting Chi, Yuan, Hai Sheng, Zhou, Li Wei, Réblová, Martina, Fournier, Jacques, Camporesi, Erio, Luangsa-ard, J. Jennifer, Tasanathai, Kanoksri, Khonsanit, Artit, Thanakitpipattana, Donnaya, Somrithipol, Sayanh, Diederich, Paul, Millanes, Ana M., Common, Ralph S., Stadler, Marc, Yan, Ji Ye, Li, XingHong, Lee, Hye Won, Nguyen, Thi T. T., Lee, Hyang Burm, Battistin, Eliseo, Marsico, Orlando, Vizzini, Alfredo, Vila, Jordi, Ercole, Enrico, Eberhardt, Ursula, Simonini, Giampaolo, Wen, Hua-An, Chen, Xin-Hua, Miettinen, Otto, Spirin, Viacheslav, and Hernawati

Published
2015
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19. Draft Genomes of Six Wild Poisonous Mushrooms

Author

Parnmen, Sittiporn, primary, Nooron, Nattakarn, additional, Sikaphan, Sujitra, additional, Uttawichai, Chutimon, additional, Polputpisatkul, Dutsadee, additional, Phatsarapongkul, Sriprapa, additional, Chankunasuka, Rungsaeng, additional, Nitma, Unchalee, additional, Thunkhamrak, Chidkamon, additional, Palakul, Nisakorn, additional, Naksuwankul, Khwanruan, additional, Pringsulaka, Onanong, additional, and Rangsiruji, Achariya, additional

Published
2022
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22. Erratum to: Fungal diversity notes 111–252—taxonomic and phylogenetic contributions to fungal taxa

Author

Ariyawansa, Hiran A., Hyde, Kevin D., Jayasiri, Subashini C., Buyck, Bart, Chethana, K. W. Thilini, Dai, Dong Qin, Dai, Yu Cheng, Daranagama, Dinushani A., Jayawardena, Ruvishika S., Lücking, Robert, Ghobad-Nejhad, Masoomeh, Niskanen, Tuula, Thambugala, Kasun M., Voigt, Kerstin, Zhao, Rui Lin, Li, Guo-Jie, Doilom, Mingkwan, Boonmee, Saranyaphat, Yang, Zhu L., Cai, Qing, Cui, Yang-Yang, Bahkali, Ali H., Chen, Jie, Cui, Bao Kai, Chen, Jia Jia, Dayarathne, Monika C., Dissanayake, Asha J., Ekanayaka, Anusha H., Hashimoto, Akira, Hongsanan, Sinang, Jones, E. B. Gareth, Larsson, Ellen, Li, Wen Jing, Li, Qi-Rui, Liu, Jian Kui, Luo, Zong Long, Maharachchikumbura, Sajeewa S. N., Mapook, Ausana, McKenzie, Eric H. C., Norphanphoun, Chada, Konta, Sirinapa, Pang, Ka Lai, Perera, Rekhani H., Phookamsak, Rungtiwa, Phukhamsakda, Chayanard, Pinruan, Umpava, Randrianjohany, Emile, Singtripop, Chonticha, Tanaka, Kazuaki, Tian, Cheng Ming, Tibpromma, Saowaluck, Abdel-Wahab, Mohamed A., Wanasinghe, Dhanushka N., Wijayawardene, Nalin N., Zhang, Jin-Feng, Zhang, Huang, Abdel-Aziz, Faten A., Wedin, Mats, Westberg, Martin, Ammirati, Joseph F., Bulgakov, Timur S., Lima, Diogo X., Callaghan, Tony M., Callac, Philipp, Chang, Cheng-Hao, Coca, Luis F., Dal-Forno, Manuela, Dollhofer, Veronika, Fliegerová, Kateřina, Greiner, Katrin, Griffith, Gareth W., Ho, Hsiao-Man, Hofstetter, Valerie, Jeewon, Rajesh, Kang, Ji Chuan, Wen, Ting-Chi, Kirk, Paul M., Kytövuori, Ilkka, Lawrey, James D., Xing, Jia, Li, Hong, Liu, Zou Yi, Liu, Xing Zhong, Liimatainen, Kare, Lumbsch, H. Thorsten, Matsumura, Misato, Moncada, Bibiana, Nuankaew, Salilaporn, Parnmen, Sittiporn, de Azevedo Santiago, André L. C. M., Sommai, Sujinda, Song, Yu, de Souza, Carlos A. F., de Souza-Motta, Cristina M., Su, Hong Yan, Suetrong, Satinee, Wang, Yong, Wei, Syuan-Fong, Wen, Ting Chi, Yuan, Hai Sheng, Zhou, Li Wei, Réblová, Martina, Fournier, Jacques, Camporesi, Erio, Luangsa-ard, J. Jennifer, Tasanathai, Kanoksri, Khonsanit, Artit, Thanakitpipattana, Donnaya, Somrithipol, Sayanh, Diederich, Paul, Millanes, Ana M., Common, Ralph S., Stadler, Marc, Yan, Ji Ye, Li, XingHong, Lee, Hye Won, Nguyen, Thi T. T., Lee, Hyang Burm, Battistin, Eliseo, Marsico, Orlando, Vizzini, Alfredo, Vila, Jordi, Ercole, Enrico, Eberhardt, Ursula, Simonini, Giampaolo, Wen, Hua-An, Chen, Xin-Hua, Miettinen, Otto, Spirin, Viacheslav, and Hernawati

Published
2015
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25. Early transmission patterns of coronavirus disease 2019 (COVID-19) in travellers from Wuhan to Thailand, January 2020

Author

Okada, Pilailuk, primary, Buathong, Rome, additional, Phuygun, Siripaporn, additional, Thanadachakul, Thanutsapa, additional, Parnmen, Sittiporn, additional, Wongboot, Warawan, additional, Waicharoen, Sunthareeya, additional, Wacharapluesadee, Supaporn, additional, Uttayamakul, Sumonmal, additional, Vachiraphan, Apichart, additional, Chittaganpitch, Malinee, additional, Mekha, Nanthawan, additional, Janejai, Noppavan, additional, Iamsirithaworn, Sopon, additional, Lee, Raphael TC, additional, and Maurer-Stroh, Sebastian, additional

Published
2020
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27. A new checklist of lichenized fungi occurring in Thailand

Author

Buaruang, Kawinnat, primary, Boonpragob, Kansri, additional, Mongkolsuk, Pachara, additional, Sangvichien, Ek, additional, Vongshewarat, Kajohnsak, additional, Polyiam, Wetchasart, additional, Rangsiruji, Achariya, additional, Saipunkaew, Wanaruk, additional, Naksuwankul, Khwanruan, additional, Kalb, Jutarat, additional, Parnmen, Sittiporn, additional, Kraichak, Ekaphan, additional, Phraphuchamnong, Phimpisa, additional, Meesim, Sanya, additional, Luangsuphabool, Theerapat, additional, Nirongbut, Phimpha, additional, Poengsungnoen, Vasun, additional, Duangphui, Natwida, additional, Sodamuk, Mattika, additional, Phokaeo, Supatra, additional, Molsil, Muthita, additional, Aptroot, André, additional, Kalb, Klaus, additional, Luecking, Robert, additional, and Lumbsch, Thorsten, additional

Published
2017
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29. A phylogenetic framework for reassessing generic concepts and species delimitation in the lichenized family Trypetheliaceae (Ascomycota: Dothideomycetes)

Author

LÜCKING, Robert, primary, NELSEN, Matthew P., additional, APTROOT, André, additional, BARILLAS DE KLEE, Roselvira, additional, BAWINGAN, Paulina A., additional, BENATTI, Michel N., additional, BINH, Nguyen Quoc, additional, BUNGARTZ, Frank, additional, CÁCERES, Marcela E. S., additional, CANÊZ, Luciana da Silva, additional, CHAVES, José-Luis, additional, ERTZ, Damien, additional, ESQUIVEL, Rhina Esmeralda, additional, FERRARO, Lidia Itati, additional, GRIJALVA, Alfredo, additional, GUEIDAN, Cécile, additional, HERNÁNDEZ M., Jesús E., additional, KNIGHT, Allison, additional, LUMBSCH, H. Thorsten, additional, MARCELLI, Marcelo P., additional, MERCADO-DÍAZ, Joel A., additional, MONCADA, Bibiana, additional, MORALES, Eduardo A., additional, NAKSUWANKUL, Khwanruan, additional, OROZCO, Thelma, additional, PARNMEN, Sittiporn, additional, RIVAS PLATA, Eimy, additional, SALAZAR-ALLEN, Noris, additional, SPIELMANN, Adriano A., additional, and VENTURA, Nohemy, additional

Published
2016
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32. Cladia tasmanica Parnmen & Lumbsch 2013, sp. nov

Author

Parnmen, Sittiporn, Leavitt, Steven D., Rangsiruji, Achariya, and Lumbsch, H. Thorsten

Subjects
Ascomycota, Lecanorales, Cladia, Fungi, Biodiversity, Lecanoromycetes, Cladia tasmanica, Taxonomy, Cladoniaceae
Abstract

Cladia tasmanica Parnmen & Lumbsch, sp. nov. (Fig. 3C). Mycobank No.: 803450 Characterized by swollen sterile pseudopodetia, areolate, 3–6 cm tall, glossy and usually smooth, chestnut-brown to blackish brown, not perforated, and di- or trichotomously branched. Conidiomata on terminal branches of sterile pseudopodetia, conidia 4–7 µm long, bacilliform. Fertile pseudopodetia robust and taller than sterile pseudopodetia, necrotic at the base, racemosely branched. Apothecia on terminal branches of fertile pseudopodetia, 0.5–1.0 mm wide, disk concave to plane, blackish; ascospores not seen. Secondary chemistry: Fumarprotocetraric acid. Type: — AUSTRALIA. Tasmania: Lake St. Clair National Park, Trail to Frenchman's cap, 42°12'S 145°59'E, 770 m, Lumbsch 20011c (holotype HO!; isotype F!) Phylogenetic notes: —Strongly supported as a monophyletic lineage in concatenated multilocus gene tree (ML bootstrap = 100%, posterior probability = 1.0). Cladia tasmanica was previously called clade 9 (Parnmen et al. 2012). This species belongs to an early diverging lineage within the C. aggregata complex sister to all other species in the group. Reference sequence: — GenBank No. JN115301. Distribution and habitat: This species is only known from Tasmania, where it grows on soil in wet sclerophyll forests and buttongrass moorland. Etymology: —Referring to the island of Tasmania where the species is found. Additional specimens examined (paratypes): — AUSTRALIA. Tasmania: Southwest National Park, March 2009, Lumbsch, Widhelm & Parnmen 19989o, 19994k (F, RAMK).

Published
2013
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33. Cladia neocaledonica Parnmen & Lumbsch, comb. nov

Author

Parnmen, Sittiporn, Leavitt, Steven D., Rangsiruji, Achariya, and Lumbsch, H. Thorsten

Subjects
Ascomycota, Lecanorales, Cladia neocaledonica, Cladia, Fungi, Biodiversity, Lecanoromycetes, Taxonomy, Cladoniaceae
Abstract

Cladia neocaledonica (Räsänen) Parnmen & Lumbsch, comb. nov. Mycobank No.: 803446 Cladonia neocaledonica Räsänen (1944: 20). Type: NEW CALEDONIA. Wagap, 1863, Vieillard s.n. (lectotype H!, designated by Filson [1981]; isolectotypes CANB, H, KUO, TNS, US)., Published as part of Parnmen, Sittiporn, Leavitt, Steven D., Rangsiruji, Achariya & Lumbsch, H. Thorsten, 2013, Identification of species in the Cladia aggregata group using DNA barcoding (Ascomycota: Lecanorales), pp. 1-14 in Phytotaxa 115 (1) on page 7, DOI: 10.11646/phytotaxa.115.1.1, http://zenodo.org/record/5078997, {"references":["Rasanen, V. (1944) Lichenes Novi I. Annales Botanici Societatis Zoologicae-Botanicae Fennicae \" Vanamo \" 20: 1 - 34.","Filson, R. B. (1981) A revision of the lichen genus Cladia Nyl. Journal of the Hattori Botanical Laboratory 49: 1 - 75."]}

Published
2013
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34. Cladia blanchonii Parnmen & Lumbsch 2013, sp. nov

Author

Parnmen, Sittiporn, Leavitt, Steven D., Rangsiruji, Achariya, and Lumbsch, H. Thorsten

Subjects
Ascomycota, Lecanorales, Cladia, Fungi, Biodiversity, Lecanoromycetes, Cladia blanchonii, Taxonomy, Cladoniaceae
Abstract

Cladia blanchonii Parnmen & Lumbsch, sp. nov. (Fig. 3A). Mycobank No.: 803448 Characterized by inflated and tapered sterile pseudopodetia, with glossy, pale yellow to greenish brown surface, mostly dichotomously branched toward the apex. Perforations rare to abundant. Fertile pseudopodetia robust and either inflated or not, and racemosely branched. Perforations abundant. Conidiomata on terminal branches of sterile pseudopodetia, conidia 5–7.5 µm long, bacilliform. Apothecia on short terminal branches of fertile pseudopodetia, 0.5–1.0 mm wide, disk concave to plane, brownish black; ascospores ellipsoid, non-septate, hyaline, 6.25–7.50 × 2.5 µm, 8 per ascus. Secondary chemistry: Barbatic acid and 4- O -demethylbarbatic acid. Type: — NEW ZEALAND. North Island: West Auckland, Mt. Albert, October 2011, Blanchon 4629 (holotype AK!, isotype F!, UNITEC!). Phylogenetic notes: —Strongly supported as a monophyletic lineage in concatenated multilocus gene tree (ML bootstrap = 100%; posterior probability = 1.0). Cladia blanchonii was named clade 2 previously (Parnmen et al. 2012). Reference sequence: — GenBank No. KC148367. Distribution and habitat: —Widespread in New Zealand and also found in Tasmania and south-eastern continental Australia. Mostly specimens were found on mossy soil and rocky outcrops. Etymology: —The new species is named after our colleague and friend, the New Zealand lichenologist, Dan Blanchon, who has collected the type material of this species. Additional specimens examined (paratypes): — AUSTRALIA. Australian Capital Territory: Canberra Nature Park, August 2008, Elix 39061 (CANB); Tasmania: Ben Lomond National Park, Tasmania, March 2009, Lumbsch, Widhelm & Parnmen 19994c, 19975e, 19975g, 20039a (F, RAMK). NEW ZEALAND. North Island: West Auckland, Omanawanui track, August 2011, Hayward 004634 (F); ibid., Wellington Ngaio, October 2011, Blanchon & Edmonds 004630 (F); ibid., Destruction Gully track, Hayward 004635 (F). South Island: Charming Creek, Ngakawau, West coast, January 2009, Knight 61711 (OTA); ibid., Catlins river, Coastal Otago, May 2009, Knight 61712 (OTA)., Published as part of Parnmen, Sittiporn, Leavitt, Steven D., Rangsiruji, Achariya & Lumbsch, H. Thorsten, 2013, Identification of species in the Cladia aggregata group using DNA barcoding (Ascomycota: Lecanorales), pp. 1-14 in Phytotaxa 115 (1) on page 9, DOI: 10.11646/phytotaxa.115.1.1, http://zenodo.org/record/5078997, {"references":["Parnmen, S., Rangsiruji, A., Mongkolsuk, P., Boonpragob, K., Nutakki, A. & Lumbsch, H. T. (2012) Using phylogenetic and coalescent methods to understand the species diversity in the Cladia aggregata complex (Ascomycota, Lecanorales). PLoS ONE 7: e 52245. http: // dx. doi. org / 10.1371 / journal. pone. 0052245"]}

Published
2013
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35. Identification of species in the Cladia aggregata group using DNA barcoding (Ascomycota: Lecanorales)

Author

Parnmen, Sittiporn, Leavitt, Steven D., Rangsiruji, Achariya, and Lumbsch, H. Thorsten

Subjects
Ascomycota, Lecanorales, Fungi, Biodiversity, Lecanoromycetes, Taxonomy, Cladoniaceae
Abstract

Parnmen, Sittiporn, Leavitt, Steven D., Rangsiruji, Achariya, Lumbsch, H. Thorsten (2013): Identification of species in the Cladia aggregata group using DNA barcoding (Ascomycota: Lecanorales). Phytotaxa 115 (1): 1-14, DOI: 10.11646/phytotaxa.115.1.1, URL: http://dx.doi.org/10.11646/phytotaxa.115.1.1

Published
2013

36. Cladia cryptica Parnmen & Lumbsch 2013, sp. nov

Author

Parnmen, Sittiporn, Leavitt, Steven D., Rangsiruji, Achariya, and Lumbsch, H. Thorsten

Subjects
Cladia cryptica, Ascomycota, Lecanorales, Cladia, Fungi, Biodiversity, Lecanoromycetes, Taxonomy, Cladoniaceae
Abstract

Cladia cryptica Parnmen & Lumbsch, sp. nov. (Fig. 3B). Mycobank No.: 803449 Characterized by inflated sterile pseudopodetia, with glossy, yellow to brownish surface, mostly dichotomously branched toward the apex. Perforations abundant. Conidiomata on terminal branches of sterile pseudopodetia, conidia 5–7.5 µm long, bacilliform. The sizes of fertile pseudopodetia are variable, with yellow to brownish yellow surfaces, racemosely branched. Apothecia on terminal branches of fertile pseudopodetia, 0.5–1.0 mm wide, disk concave to plane, brownish black; ascospores ellipsoid, non-septate, hyaline, 7–10 × 2.5 µm, 8 per ascus. Secondary chemistry: two chemical races were found: I) Barbatic acid and 4- O -demethylbarbatic acid, and II) stictic acid chemosyndrome. Type: — NEW ZEALAND. South Island: Southland, Mistletoe Lake, Te Anau Downs, 45°12'S 167°49'E, 218 m, Knight 61705 (holotype AK!; isotype F!). Phylogenetic notes: —Strongly to moderately supported monophyletic lineage in concatenated multilocus gene tree (ML bootstrap = 83%, posterior probability = 1.0). Cladia cryptica is identical to clade 3 in Parnmen et al. (2012). Reference sequence: — GenBank No. KC148368. Distribution and habitat: —Known from Australia, New Zealand and Malaysia. It is found on soil, grassy soil and rocks. In Tasmania, we found this species in dry sclerophyll forests. Etymology: —The epithet cryptica refers to the fact that the species has been hidden under the name of the species complex C. aggregata. Additional specimens examined (paratypes): — AUSTRALIA. Australian Capital Territory: Canberra Nature Park, 28 August 2008, Elix 39060 (CANB); Tasmania: Ben Lomond National Park, March 2009, Lumbsch, Widhelm & Parnmen 20034f (F, RAMK); ibid., West of Oxford, March 2009, Lumbsch, Widhelm & Parnmen 19975h, 19975f (F, RAMK); MALAYSIA. Penang: Kedah Peak, March 2010, Buaruang & Polyiam s.n. (RAMK); NEW ZEALAND. South Island: Otago, Swampy summit, August 2011, Ludwig 61724 (F).

Published
2013
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37. Production of the bioactive pigment elsinochrome A by a cultured mycobiont strain of the lichen <italic>Graphis elongata</italic>.

Author

Fazio, Alejandra T., Adler, Mónica T., Parnmen, Sittiporn, Lücking, Robert, and Maier, Marta S.

Abstract

We report the production of the perylenequinone pigment elsinochrome A in aposymbiotic culture of the mycobiont of the crustose epiphytic lichen Graphis elongata Zenker (Lecanoromycetes), collected in Argentina (Buenos Aires). The substance was not detected in the lichenized thallus (using HPLC techniques) and is otherwise only known from one unrelated lichen and a few genera of non-lichenized, plant-pathogenic fungi in the class Dothideomycetes. The phylogenetic affinities of the lichen mycobiont and the cultured fungus were confirmed using DNA sequence data of the mitochondrial small subunit rDNA (mtSSU), which place the lichen fungus into the Allographa clade within Graphidaceae. The mycobiont pigment was purified and characterized by spectroscopic methods. This is the first case where a rare pigment, otherwise known from non-lichenized, plant-pathogenic fungi, is produced in aposymbiotic culture of a lichen mycobiont, while, at the same time, being absent from the lichen thallus itself. Based on this finding, we discuss the previously postulated hypothesis that lichen mycobionts maintain secondary metabolic pathways of non-lichenized ancestors in their genome, while gene expression and production of metabolites is suppressed in the lichenized state due to toxicity to the photobiont. [ABSTRACT FROM AUTHOR]

Published
2018
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38. One hundred new species of lichenized fungi:a signature of undiscovered global diversity

Author

Lumbsch, H. Thorsten, Ahti, Teuvo, Altermann, Susanne, Amo De Paz, Guillermo, Aptroot, Andre, Arup, Ulf, Barcenas Pena, Alejandrina, Bawingan, Paulina A., Benatti, Michel N., Betancourt, Luisa, Bjoerk, Curtis R., Boonpragob, Kansri, Brand, Maarten, Bungartz, Frank, Caceres, Marcela E. S., Candan, Mehtmet, Luis Chaves, Jose, Clerc, Philippe, Common, Ralph, Coppins, Brian J., Crespo, Ana, Dal-Forno, Manuela, Divakar, Pradeep K., Duya, Melizar V., Elix, John A., Elvebakk, Arve, Fankhauser, Johnathon D., Farkas, Edit, Ferraro, Lidia Itati, Fischer, Eberhard, Galloway, David J., Gaya, Ester, Giralt, Mireia, Goward, Trevor, Grube, Martin, Hafellner, Josef, Hernandez M, Jesus E., Herrera Campos, Maria De Los Angeles, Kalb, Klaus, Karnefelt, Ingvar, Kantvilas, Gintaras, Killmann, Dorothee, Kirika, Paul, Knudsen, Kerry, Komposch, Harald, Kondratyuk, Sergey, Lawrey, James D., Mangold, Armin, Marcelli, Marcelo P., Mccune, Bruce, Messuti, Maria Ines, Michlig, Andrea, Gonzalez, Ricardo Miranda, Moncada, Bibiana, Naikatini, Alifereti, Nelsen, Matthew P., Ovstedal, Dag O., Palice, Zdenek, Papong, Khwanruan, Parnmen, Sittiporn, Perez-Ortega, Sergio, Printzen, Christian, Rico, Victor J., Plata, Eimy Rivas, Robayo, Javier, Rosabal, Dania, Ruprecht, Ulrike, Allen, Noris Salazar, Sancho, Leopoldo, De Jesus, Luciana Santos, Vieira, Tamires Santos, Schultz, Matthias, Seaward, Mark R. D., Serusiaux, Emmanuel, Schmitt, Imke, Sipman, Harrie J. M., Sohrabi, Mohammad, Søchting, Ulrik, Søgaard, Majbrit Zeuthen, Sparrius, Laurens B., Spielmann, Adriano, Spribille, Toby, Sutjaritturakan, Jutarat, Thammathaworn, Achra, Thell, Arne, Thor, Goeran, Thues, Holger, Timdal, Einar, Truong, Camille, Tuerk, Roman, Umana Tenorio, Loengrin, Upreti, Dalip K., Van den Boom, Pieter, Vivas Rebuelta, Mercedes, Wedin, Mats, Will-Wolf, Susan, Wirth, Volkmar, Wirtz, Nora, Yahr, Rebecca, Yeshitela, Kumelachew, Ziemmeck, Frauke, Wheeler, Tim, and Lücking, Robert

Subjects
Darwin declaration, taxonomy, taxonomic impediment, Encyclopedia of Life, lichens, Global Taxonomy Initiative
Published
2011

40. Evolution of complex symbiotic relationships in a morphologically derived family of lichen‐forming fungi

Author

Divakar, Pradeep K., primary, Crespo, Ana, additional, Wedin, Mats, additional, Leavitt, Steven D., additional, Hawksworth, David L., additional, Myllys, Leena, additional, McCune, Bruce, additional, Randlane, Tiina, additional, Bjerke, Jarle W., additional, Ohmura, Yoshihito, additional, Schmitt, Imke, additional, Boluda, Carlos G., additional, Alors, David, additional, Roca‐Valiente, Beatriz, additional, Del‐Prado, Ruth, additional, Ruibal, Constantino, additional, Buaruang, Kawinnat, additional, Núñez‐Zapata, Jano, additional, Amo de Paz, Guillermo, additional, Rico, Víctor J., additional, Molina, M. Carmen, additional, Elix, John A., additional, Esslinger, Theodore L., additional, Tronstad, Inger Kristin K., additional, Lindgren, Hanna, additional, Ertz, Damien, additional, Gueidan, Cécile, additional, Saag, Lauri, additional, Mark, Kristiina, additional, Singh, Garima, additional, Dal Grande, Francesco, additional, Parnmen, Sittiporn, additional, Beck, Andreas, additional, Benatti, Michel Navarro, additional, Blanchon, Dan, additional, Candan, Mehmet, additional, Clerc, Philippe, additional, Goward, Trevor, additional, Grube, Martin, additional, Hodkinson, Brendan P., additional, Hur, Jae‐Seoun, additional, Kantvilas, Gintaras, additional, Kirika, Paul M., additional, Lendemer, James, additional, Mattsson, Jan‐Eric, additional, Messuti, María Inés, additional, Miadlikowska, Jolanta, additional, Nelsen, Matthew, additional, Ohlson, Jan I., additional, Pérez‐Ortega, Sergio, additional, Saag, Andres, additional, Sipman, Harrie J. M., additional, Sohrabi, Mohammad, additional, Thell, Arne, additional, Thor, Göran, additional, Truong, Camille, additional, Yahr, Rebecca, additional, Upreti, Dalip K., additional, Cubas, Paloma, additional, and Lumbsch, H. Thorsten, additional

Published
2015
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45. Revisiting the phylogeny of Ocellularieae, the second largest tribe within Graphidaceae (lichenized Ascomycota: Ostropales)

Author

Kraichak, Ekaphan, primary, Parnmen, Sittiporn, additional, Lücking, Robert, additional, PLATA, EIMY RIVAS, additional, Aptroot, André, additional, Cáceres, Marcela E. S., additional, ERTZ, DAMIEN, additional, Mangold, Armin, additional, Mercado-Díaz, Joel A., additional, Papong, Khwanruan, additional, BROECK, DRIES VAN DEN, additional, WEERAKOON, GOTHAMIE, additional, and Lumbsch, H. Thorsten, additional

Published
2014
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47. New higher taxa in the lichen family Graphidaceae (lichenized Ascomycota: Ostropales) based on a three-gene skeleton phylogeny

Author

Lumbsch, H. Thorsten, primary, Kraichak, Ekaphan, additional, Parnmen, Sittiporn, additional, Plata, Eimy Rivas, additional, Aptroot, André, additional, Cáceres, Marcela E. S., additional, ERTZ, DAMIEN, additional, Feuerstein, Shirley Cunha, additional, Mercado-Díaz, Joel A., additional, STAIGER, BETTINA, additional, BROECK, DRIES VAN DEN, additional, and Lücking, Robert, additional

Published
2014
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49. One hundred and seventy-five new species of Graphidaceae: closing the gap or a drop in the bucket?

Author

LÜCKING, ROBERT, primary, JOHNSTON, MARK K., additional, APTROOT, ANDRÉ, additional, KRAICHAK, EKAPHAN, additional, LENDEMER, JAMES C., additional, BOONPRAGOB, KANSRI, additional, CÁCERES, MARCELA E. S., additional, ERTZ, DAMIEN, additional, FERRARO, LIDIA ITATI, additional, JIA, ZE-FENG, additional, KALB, KLAUS, additional, MANGOLD, ARMIN, additional, MANOCH, LEKA, additional, MERCADO-DÍAZ, JOEL A., additional, MONCADA, BIBIANA, additional, MONGKOLSUK, PACHARA, additional, PAPONG, KHWANRUAN BUTSATORN, additional, PARNMEN, SITTIPORN, additional, PELÁEZ, ROUCHI N., additional, POENGSUNGNOEN, VASUN, additional, PLATA, EIMY RIVAS, additional, SAIPUNKAEW, WANARUK, additional, SIPMAN, HARRIE J. M., additional, SUTJARITTURAKAN, JUTARAT, additional, BROECK, DRIES VAN DEN, additional, KONRAT, MATT VON, additional, WEERAKOON, GOTHAMIE, additional, and LUMBSCH, H. THORSTEN, additional

Published
2014
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50. Five new species of Graphidaceae (Ascomycota, Ostropales) from Thailand.

Author

Naksuwankul, Khwanyuruan, Kraichak, Ekaphan, Parnmen, Sittiporn, Lücking, Robert, and Lumbsch, H. Thorsten

Subjects
GRAPHIDACEAE, ASCOMYCETES
Abstract

Five new species of Graphidaceae are described from Thailand. Molecular evidence and phenotypical characters support their independent status from related and similar species. Glaucotrema thailandicum Naksuwankul, Lücking & Lumbsch is unique within the genus in having submuriform ascospores. Ocellularia klinhomii Naksuwankul, Lücking & Lumbsch is characterized by having a whitish gray, rimose thallus with ascomata in verrucae and surrounded by a black ring and lack of secondary metabolites. Ocellularia phatamensis Naksuwankul, Parnmen & Lumbsch has a grayish, thick and rimose thallus, differing from O. klinhomii in lacking a dark apothecial rim and having ascomata that are not immersed in verrucae. Ocellularia thailandica Naksuwankul, Kraichak & Lumbsch differs from O. albocincta in lacking a columella. Ocellularia rotundifumosa Naksuwankul, Lücking & Lumbsch differs from O. fumosa in having ascospores with rounded ends. An epitype for O. krathingensis is selected. [ABSTRACT FROM AUTHOR]

Published
2016
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