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Copyright of Coral Reefs is the property of Springer Nature and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Genetic diversity is a critical cornerstone of biodiversity and is a central goal in management and conservation biology. Such diversity has implications for survivability, adaptability, and resiliency of a species. This study aimed to determine levels of genetic diversity and population genetic structure in the Northern Black Swift (Cypseloides niger borealis). This species nests across western North America as far north as Canada and south into Mexico, migrating annually to wintering areas in western Brazil. Colonies occur in isolated areas where appropriate nesting habitat is available, and in many cases, colonies are widely separated from each other. Banding data revealed that adults of this long-lived species return to their same breeding colony annually for many years. Additionally, some females exhibit natal philopatry, returning to and successfully raising offspring at the colony where they were hatched. This allowed us to hypothesize that we might expect some amount of genetic structure in the samples we studied. The life history characteristics of this species suggest that breeding colonies might be more genetically differentiated than other migratory birds that tend to have limited population genetic structure across their ranges. We used newly developed species-specific microsatellite primers to examine levels of genetic diversity and connectivity among 6 Black Swift colonies in the western United States. Levels of genetic diversity were generally high (expected heterozygosity ranging from 0.67 to 0.75) and comparable across 3 breeding sites with sufficient sample sizes (N > 5). Principal coordinates analysis and STRUCTURE analysis showed no real clustering of individuals in regard to colonies, suggesting one panmictic metapopulation rather than multiple populations that are genetically distinct as we had previously hypothesized based on banding data. This is the first study to elucidate the genetic structure among colonies of Black Swift. [ABSTRACT FROM AUTHOR]

Abstract Objective The connectivity and genetic structuring of populations throughout a region influence a species’ resilience and probability of recovery from anthropogenic impacts. By gaining a comprehensive understanding of population connectivity, more effective management can be prioritized. To assess the connectivity and population genetic structure of a common cold-water coral species, Desmophyllum pertusum (Lophelia pertusa), we performed Restriction-site Associated DNA Sequencing (RADseq) on individuals from nine sites ranging from submarine canyons off New England to the southeastern coast of the United States (SEUS) and the Gulf of Mexico (GOM). Fifty-seven individuals and 3,180 single-nucleotide polymorphisms (SNPs) were used to assess genetic differentiation. Results High connectivity exists among populations along the SEUS, yet these populations were differentiated from those to the north off New England and in Norfolk Canyon along the North Atlantic coast of the United States, as well as those in the GOM. Interestingly, Norfolk Canyon, located just north of North Carolina, and GOM populations exhibited low levels of genetic differentiation, corroborating previous microsatellite analyses and signifying gene flow between these populations. Increasing sample sizes from existing populations and including additional sampling sites over a larger geographic range would help define potential source populations and reveal fine-scale connectivity patterns among D. pertusum populations.

Objective: The connectivity and genetic structuring of populations throughout a region influence a species' resilience and probability of recovery from anthropogenic impacts. By gaining a comprehensive understanding of population connectivity, more effective management can be prioritized. To assess the connectivity and population genetic structure of a common cold-water coral species, Desmophyllum pertusum (Lophelia pertusa), we performed Restriction-site Associated DNA Sequencing (RADseq) on individuals from nine sites ranging from submarine canyons off New England to the southeastern coast of the United States (SEUS) and the Gulf of Mexico (GOM). Fifty-seven individuals and 3,180 single-nucleotide polymorphisms (SNPs) were used to assess genetic differentiation. Results: High connectivity exists among populations along the SEUS, yet these populations were differentiated from those to the north off New England and in Norfolk Canyon along the North Atlantic coast of the United States, as well as those in the GOM. Interestingly, Norfolk Canyon, located just north of North Carolina, and GOM populations exhibited low levels of genetic differentiation, corroborating previous microsatellite analyses and signifying gene flow between these populations. Increasing sample sizes from existing populations and including additional sampling sites over a larger geographic range would help define potential source populations and reveal fine-scale connectivity patterns among D. pertusum populations. [ABSTRACT FROM AUTHOR]

Silver Carp (Hypophthalmichthys molitrix) populations have established and expanded throughout the lower Mississippi River basin (LMRB). Information pertaining to Silver Carp population mixing among rivers within the LMRB is lacking. Documented relations between Silver Carp otolith and river water barium (Ba) and strontium (Sr) microchemical signatures may enable estimation of origins of Silver Carp in the LMRB. Replicate water samples and otoliths from 308 Silver Carp were collected from the Cache, Arkansas, White, Yazoo, St. Francis, L'Anguille, and Mississippi rivers, and Merrisach Lake (situated along a canal connecting the lower reaches of the Arkansas and White rivers) within the LMRB. Water and carp otolith microchemical signatures exhibited consistent differences among water bodies. A classification and regression tree model exhibited 80% accuracy when assigning carp collected from the White, Arkansas, and Mississippi rivers based on fish-water microchemical signatures. Model accuracy decreased as smaller rivers were incorporated into models. Predicted natal origin based on otolith microchemical signatures suggested the White River (43%) and the lower Mississippi River (39%) were the likely origins for ~ 82% of the Silver Carp sampled. Despite the prevalence of adult Silver Carp within the Arkansas River system, fewer (18%) appeared to have originated there compared to the White and Mississippi rivers. Long-term water sampling and additional isotopic measurements may refine analyses to better determine the relative contributions of Silver Carp from the smaller river systems. Population mixing of Silver Carp among tributary rivers appears to be common within the LMRB, and removal efforts may benefit from evaluating the magnitude of fish movement and connectivity among rivers. [ABSTRACT FROM AUTHOR]

To inform the management of wild fish populations, it is equally important to understand both the ecological connectivity of habitat patches, apparent at annual and seasonal scales, and the genetic connectivity, emerging at evolutionary scales across generations. Ecological connectivity indicates the potential for rapid recolonization upon local depletion, while genetic connectivity informs about the conservation needs related to the evolution of subpopulations and ecotypes in metapopulations. We combined acoustic biotelemetry and pooled-genome sequencing to study a northern pike (Esox lucius) population as a model of a freshwater piscivore that inhabits a network of shallow brackish lagoons in the southern Baltic Sea. We found limited ecological connectivity among genetically similar subpopulations of pike, suggesting a metapopulation structure characterized by discrete local subpopulations with infrequent migrations between them. Connectivity of different lagoons increased during spawning, suggesting directed spawning migrations to either freshwater rivers or low salinity patches in connected lake-like bays. Spawning site fidelity to either brackish or freshwater spawning sites was observed, further contributing to the reproductive isolation of certain subpopulations. The genetic population structure aligned with salinity gradients and geographical distance and was significant between pairs of rivers draining into the lagoon network, but it was unrelated to ecological connectivity. The results collectively suggest that local subpopulations may not rapidly replenish upon local depletion and that even weak connectivity among subpopulations was sufficient to maintain genetic homogeneity across lagoons with similar salinity levels. Effective management and conservation of species forming metapopulations, such as the coastal northern pike studied here, necessitate localized approaches that adapt fishing mortality to local abundance and promote access to specific habitats, especially rivers, during spawning to conserve the entire genetic biodiversity and foster resilience of the metapopulation. [ABSTRACT FROM AUTHOR]

Objective: Understanding the spatial connectivity of elasmobranch populations is critical for regional fisheries management. The Blacktip Shark Carcharhinus limbatus is abundant in coastal waters of the Gulf of Mexico (GoM) and important in recreational and commercial fisheries. Based on genetic and tagging studies, GoM Blacktip Sharks are currently managed under separate quotas between the eastern and western GoM (divided at 88°W), but no studies have used vertebral chemistry to assess the population structure of adult Blacktip Sharks. Methods: We compared vertebral elemental signatures (barium [Ba], magnesium [Mg], manganese [Mn], strontium [Sr], and zinc [Zn]) for the first year of life with last occupied habitats (vertebral edges) in Blacktip Sharks collected from the western (Texas and Louisiana) and eastern (Alabama and Florida) coastal waters of the northern GoM. Result: We found significant regional differences in Ba, Mg, Mn, and Sr vertebral edge signatures, suggesting ecological separation of Blacktip Sharks. Significant correlation between first‐year and edge signatures suggested a high degree of residency between life stages. Cross‐validated discriminant function analyses yielded highest regional classification accuracies when Florida sharks were grouped separately west of 88°W (90%), demonstrating the unique elemental signatures of eastern versus western GoM Blacktip Sharks under current management delineations. Conclusion: Combined, these findings demonstrate that trace element markers can distinguish regional populations of Blacktip Sharks and provide a complimentary approach in addition to genetics and physical tagging to support current stock management efforts. Impact statementStocks of Blacktip Sharks are managed under separate quotas in the eastern and western Gulf of Mexico. In this study, elemental signatures in mineralized vertebral cartilage of Blacktip Sharks confirm ecological population separation. Natural chemical tags in shark vertebrae offer an additional tool to characterize population connectivity and stock delineation for highly migratory shark species. [ABSTRACT FROM AUTHOR]

Genetic connectivity of kelp populations can provide essential information for estimating their dispersal capability and related perspectives on persistence. We examined population genetic variability to identify connectivity and potential drivers shaping population genetic clusters of Ecklonia cava, a foundation kelp species in the northwest Pacific region. Using microsatellite markers, we analyzed 11 local populations along the Korean coastline from Jeju Island to Ulleungdo. We found that entire study populations were segregated into two genetic groups, inner (south coast populations) and outer (Jeju Island and Ulleungdo) coastal regions, in accordance with current patterns around South Korea and geographical topography. Genetic similarity between the furthest populations (Jeju Island and Ulleungdo) suggest that the dispersal range of E. cava could be largely expanded by the prevalent current. Inter-population genetic structure in the perspectives of isolation-by-distance (IBD) and isolation-by-environment (IBE) revealed that distance and turbidity gradient were both contributors to the gene flow of E. cava. However, different results appeared for a few populations, suggesting that effects of these factors could vary depending on geographic range of populations and surrounding oceanographic conditions. This study suggests that gene flow of E. cava could be driven by multiple seascape factors (ocean currents, coastal topography, distance and sediments) and the interplay among them at a regional scale, which is applicable to other kelp species with diverse scales. [ABSTRACT FROM AUTHOR]

Genetic differentiation in aquatic systems is often driven by geographic distance (isolation by distance) due to the linear and hierarchical distribution of populations, but habitat fragmentation often exacerbates this effect by decreasing population connectivity, leading to isolation by resistance. Stronghold populations of the Kentucky Arrow Darter (Etheostoma spilotum) in the South Fork Kentucky River system within the Daniel Boone National Forest of eastern Kentucky, USA have a high population structure not explained by distance alone. Higher than expected levels of genetic differentiation among proximate populations were hypothesized to be driven by land‐use change, but this was not previously tested. Here we use a riverscape genetics approach to test for the effects of natural landscape features including slope, elevation and stream size, and anthropogenically altered habitat features, including specific conductance (conductivity), culverts and forest cover, on population connectivity and genetic diversity of E. spilotum. We found isolation of populations among all tributary systems and a strong, positive relationship between genetic and geographic distances as expected. However, high conductivity levels due to surface coal mining best explain the population structure observed. We also found signatures of low genetic diversity overall and indicators that culverts may limit upstream movements of E. spilotum. This study provides a novel fine‐scale view of the effects of instream and landscape features on connectivity among, and genetic diversity within populations of an imperilled, small‐bodied, benthic fish. [ABSTRACT FROM AUTHOR]

Increased access to genetic data has substantially improved how we manage threatened species. The Tasmanian devil (Sarcophilus harrisii) is listed as endangered due to the ongoing threat of a highly contagious cancer, devil facial tumour disease (DFTD), causing more than 80% population reductions. To assist future management interventions (e.g. releases into wild sites) we expanded upon previous studies of gene flow for the devil by assessing more recent and broad-scale patterns. We use genome-wide single nucleotide polymorphisms generated via DArTSeq across 21 devil sites to delineate source-sink dynamics across the species’ range. Our findings revealed gene flow is stronger on the northeast and central regions of Tasmania, with high rates of bidirectional gene flow among central sites. The northwest exhibits weaker connectivity relative to other regions of Tasmania, while gene flow appears to be non-existent between the southwest and other areas. Northeast coastal sites tend to serve as ‘sources’ for inland central sites, whereas gene flow appears restricted to the coastline in the northwest. These results are consistent with genetic structure of devil sites and spatial spread of DFTD, which has yet to arrive in the southwest region of Tasmania. Southwest isolation is probably due to mountain ranges and lack of roadways. Interestingly, some waterbodies did not appear to restrict devil movement among sites. Conversely, areas of high elevation act as apparent barriers, as evidenced by limited gene flow observed between eastern and western sites. Integrating source-sink dynamics into conservation management planning will be crucial in developing effective strategies to safeguard the Tasmanian devil and other threatened species facing similar threats (i.e. disease, habitat loss).

The reef manta ray Mobula alfredi is present throughout most island groups that form the Raja Ampat archipelago, Indonesia. The species is protected regionally and nationally and is currently managed as a single homogeneous population within the 6.7 million ha archipelago. However, scientific evidence is currently lacking regarding the spatial connectivity and population structure of M. alfredi within this archipelago. Using network analysis and an array of 34 acoustic receivers deployed throughout Raja Ampat between February 2016 and September 2021, we examined the movements of 72 subadult and adult M. alfredi tagged in seven regions of Raja Ampat. A total of 1094 M. alfredi movements were recorded and were primarily concentrated between nearby receiver stations, highlighting frequent local movements within, and limited long-distance movements between regional acoustic receiver arrays. Network analysis revealed highly connected nodes acting as hubs important for M. alfredi movements. A community detection algorithm further indicated clusters within the network. Our results suggest the existence of a metapopulation comprising three demographically and geographically distinct subpopulations within the archipelago. They also reveal the importance of Eagle Rock as a critical node in the M. alfredi movement network, justifying the urgent inclusion of this site within the Raja Ampat marine protected area network.

Introductio: Sea cucumbers are increasingly demanded as seafood in different cultures around the world. Holothurians could be potentially exploited in southern Bay of Biscay (Iberian Cantabrian coast) where they are not fished yet. Recent studies show relatively high pollution by emerging pollutants like microplastics (MPs) in the region; perhaps the exposure of holothurians to those MPs may put them at risk. Material and methods: Here we analysed 60 samples of Holothuria forskali taken from the west and east of the Cape Peñas transition zone in different seasons. MPs were quantified from body wall tissue, and mitochondrial DNA sequences (16S and COI genes) were employed to determine population connectivity and infer replenishment capacity. Results: Much higher MPs content in holothurian tissue than in water and sediments confirmed bioconcentration in this species. Significant differences between sampling locations were found, holothurian pollution being consistent with the occurrence of MPs sources like rivers, fishing ports and aquaculture. Genetic connectivity and no signals of diversity reduction in the most polluted samples suggest population replenishment capacity in H. forskali in the studied region. Results for a few samples of H. mammata from the same sampling points confirmed a higher MPs pollution at the west of Cape Peñas. Discussion: According to these exploratory results, sea cucumbers seem to accumulate MPs especially in the western Cantabrian Sea. Further studies are recommended to understand the possible MPs threat for these holothurian species. [ABSTRACT FROM AUTHOR]

Understanding the niche dynamic among distinct populations and delineating the dispersal corridors that exist between them under current climates is critical for elucidating the contemporary forces driving genetic divergence, facilitating population connectivity, and informing targeted conservation efforts, particularly for species exhibiting pronounced intraspecific lineages. In this study, we focus on evaluating the range and niche dynamics of the intraspecific lineages of Emmenopterys henryi and exploring potential patterns of population connectivity both within and across these lineages. Our findings unveiled a significant niche divergence between the two intraspecific lineages, characterized by limited overlap in climatic conditions and suitable ranges. Furthermore, our analysis of population connectivity revealed the presence of dispersal routes with varying degrees of connectivity within each lineage, while low connectivity was observed between the two lineages. Our results highlight the critical role of fine-scale ecological niche models (ENMs) and genetic connectivity analyses in elucidating the complexities of niche evolution and genetic connectivity, particularly for species with discrete intraspecific lineages. In addition, given the fact that rapid genetic erosion of species inhabiting the regions we focus on in this study is often associated with habitat loss and fragmentation, our findings will also offer valuable insights for designing targeted conservation strategies aimed at restoring connectivity and increasing local population sizes for this endangered species. [ABSTRACT FROM AUTHOR]

In the face of rapid urbanization, species confront various challenges, and the consequences of limited gene flow become evident. One such illustration is the Endangered salamander Hynobius yangi inhabiting a restricted region in South Korea under a mounting urbanization pressure. The species' metapopulation dynamics is consequently characterized by lack of sufficient gene flow. We compared the landscape genetic results between the two H. yangi metapopulations, one divided by an urbanized area or the other included within a forested area, using previously developed 14 species-specific genetic markers. We hypothesized that the population in the urbanized area will show signs of impact by the urbanization, while the population in the forested area will not. We analyzed the genetic diversity, population genetic structure, contemporary gene flow rate, and estimated the resistance values of land cover classes to assess landscape connectivity of each metapopulation. The urbanized area showed subdivided population structure, with higher inbreeding level, which was clearly distinguished from that of the forested area. The gene flow rates were consistently lower in the urbanized area. The estimated resistance values were generally higher, and the highest connectivity was confined to the peripheries in the urbanized area, in contrast to the forested area. We found the population in the urbanized area has been clearly impacted by urbanization with two times higher resistance than the forest counterpart. We recommend to establish management plans based on our result. This study will be a valuable addition to urban landscape genetic studies, especially for underrepresented taxon and region. [ABSTRACT FROM AUTHOR]

Copyright of Ecological Applications is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Population connectivity through seed and pollen dispersal determines the genetic diversity, adaptive potential, and demography of plant metapopulations. In wind-pollinated trees, population connectivity is typically maintained by long-distance pollen flow, counteracting the genetic differentiation generated by drift and restricted seed dispersal. Although strong population fragmentation is theoretically expected to disrupt connectivity in forest trees, empirical evidence remains scarce and inconclusive. We investigated contemporary connectivity within a network of small remnant populations of a declining conifer (Taxus baccata L.), which have been hypothesized to be largely isolated from each other. We tested this hypothesis using molecular data for adult trees and naturally recruited seedlings from all known remnants across a fragmented landscape spanning a length of 20 km, and a specifically designed statistical approach to quantify contemporary pollen and seed migration rates between populations. We additionally assessed dispersal potential using a spatially explicit parentage analysis to estimate seed and pollen dispersal kernels within one of the remnants. Estimated pairwise migration rates between populations were barely detectable for seeds, while they were larger (up to 1.1%) and significant for pollen. Both seed and pollen migration rates decreased with geographic distance between populations, more steeply in the case of pollen migration. According to parentage-based dispersal kernels, 51.8% of seeds and 11.4% of pollen travel less than 25 m, whereas 0.2% of seeds and 36.1% of pollen travel more than 250 m from a source tree. In addition, 1.2% of pollen can travel more than 2.5 km. We showed that strong present-day population fragmentation, with separation distances over a few kilometers between small fragments, can substantially limit the connectivity of a wind-pollinated declining tree, leading to low pollen-mediated contemporary gene flow and null or virtually null demographic connectivity via seed dispersal. [ABSTRACT FROM AUTHOR]

Dispersal has major impacts on population dynamics, population genetics and evolution, and also is critical for population management and conservation. Dispersal is frequently sex‐ and age‐specific, but current knowledge is strongly taxonomically biased toward birds and mammals.Here, we provide estimates of dispersal in a threatened freshwater turtle species, the European pond turtle Emys orbicularis. Based on 15 years of capture‐mark‐recapture (CMR) monitoring and DNA samples from 194 individuals, we quantified both demographic and genetic dispersal between three sites separated by 1.5–3.5 km. We also investigated the effect of age and sex on dispersal.Direct (CMR) and indirect (genetic) approaches provided consistent results, showing that the studied sites are connected with a flow of about one to three dozen migrants per generation. Dispersal was both age‐ and sex‐biased in this species, with frequent dispersal of adult males and a strong philopatry of juveniles (of both sexes) and adult females.The network of canals and marshes allow effective dispersal to occur among the three study sites despite the relatively large distance separating them (≤3.5 km).The strong philopatry of juveniles contrasts with the frequently higher dispersal rate in young birds and mammals and shows the relevance of investigating dispersal in various taxonomic groups. Our results provide useful information for the conservation of European pond turtle populations. [ABSTRACT FROM AUTHOR]

Abstract How to identify the drivers of population connectivity remains a fundamental question in ecology and evolution. Answering this question can be challenging in aquatic environments where dynamic lake and ocean currents coupled with high levels of dispersal and gene flow can decrease the utility of modern population genetic tools. To address this challenge, we used RAD‐Seq to genotype 959 yellow perch (Perca flavescens), a species with an ~40‐day pelagic larval duration (PLD), collected from 20 sites circumscribing Lake Michigan. We also developed a novel, integrative approach that couples detailed biophysical models with eco‐genetic agent‐based models to generate “predictive” values of genetic differentiation. By comparing predictive and empirical values of genetic differentiation, we estimated the relative contributions for known drivers of population connectivity (e.g., currents, behavior, PLD). For the main basin populations (i.e., the largest contiguous portion of the lake), we found that high gene flow led to low overall levels of genetic differentiation among populations (FST = 0.003). By far the best predictors of genetic differentiation were connectivity matrices that were derived from periods of time when there were strong and highly dispersive currents. Thus, these highly dispersive currents are driving the patterns of population connectivity in the main basin. We also found that populations from the northern and southern main basin are slightly divergent from one another, while those from Green Bay and the main basin are highly divergent (FST = 0.11). By integrating biophysical and eco‐genetic models with genome‐wide data, we illustrate that the drivers of population connectivity can be identified in high gene flow systems.

IntroductioSea cucumbers are increasingly demanded as seafood in different cultures around the world. Holothurians could be potentially exploited in southern Bay of Biscay (Iberian Cantabrian coast) where they are not fished yet. Recent studies show relatively high pollution by emerging pollutants like microplastics (MPs) in the region; perhaps the exposure of holothurians to those MPs may put them at risk.Material and methodsHere we analysed 60 samples of Holothuria forskali taken from the west and east of the Cape Peñas transition zone in different seasons. MPs were quantified from body wall tissue, and mitochondrial DNA sequences (16S and COI genes) were employed to determine population connectivity and infer replenishment capacity.ResultsMuch higher MPs content in holothurian tissue than in water and sediments confirmed bioconcentration in this species. Significant differences between sampling locations were found, holothurian pollution being consistent with the occurrence of MPs sources like rivers, fishing ports and aquaculture. Genetic connectivity and no signals of diversity reduction in the most polluted samples suggest population replenishment capacity in H. forskali in the studied region. Results for a few samples of H. mammata from the same sampling points confirmed a higher MPs pollution at the west of Cape Peñas.DiscussionAccording to these exploratory results, sea cucumbers seem to accumulate MPs especially in the western Cantabrian Sea. Further studies are recommended to understand the possible MPs threat for these holothurian species.

Population connectivity through seed and pollen dispersal determines the genetic diversity, adaptive potential, and demography of plant metapopulations. In wind-pollinated trees, population connectivity is typically maintained by long-distance pollen flow, counteracting the genetic differentiation generated by drift and restricted seed dispersal. Although strong population fragmentation is theoretically expected to disrupt connectivity in forest trees, empirical evidence remains scarce and inconclusive. We investigated contemporary connectivity within a network of small remnant populations of a declining conifer (Taxus baccata L.), which have been hypothesized to be largely isolated from each other. We tested this hypothesis using molecular data for adult trees and naturally recruited seedlings from all known remnants across a fragmented landscape spanning a length of 20 ​km, and a specifically designed statistical approach to quantify contemporary pollen and seed migration rates between populations. We additionally assessed dispersal potential using a spatially explicit parentage analysis to estimate seed and pollen dispersal kernels within one of the remnants. Estimated pairwise migration rates between populations were barely detectable for seeds, while they were larger (up to 1.1%) and significant for pollen. Both seed and pollen migration rates decreased with geographic distance between populations, more steeply in the case of pollen migration. According to parentage-based dispersal kernels, 51.8% of seeds and 11.4% of pollen travel less than 25 ​m, whereas 0.2% of seeds and 36.1% of pollen travel more than 250 ​m from a source tree. In addition, 1.2% of pollen can travel more than 2.5 ​km. We showed that strong present-day population fragmentation, with separation distances over a few kilometers between small fragments, can substantially limit the connectivity of a wind-pollinated declining tree, leading to low pollen-mediated contemporary gene flow and null or virtually null demographic connectivity via seed dispersal.

Euphausiids are an ecologically significant and abundant group of marine zooplankton that form key links between primary producers and consumers in pelagic food webs throughout the world ocean. The euphausiid species, Thysanoessa inermis and T. raschii, have boreal-Arctic distributions, occurring in the North Atlantic, North Pacific, and Arctic Oceans. The species differ in depth ranges and habitat preferences: T. raschii is found in coastal waters on continental shelf habitats, while T. inermis is abundant in slope and deep water regions. Population genetic analysis based on DNA sequence variation of the mitochondrial cytochrome oxidase I (COI) barcode region was carried out for identified specimens of T. inermis and T. raschii collected in the Arctic (Beaufort/Chukchi and Norwegian Seas, Svalbard Area) and North Atlantic (Gulf of St. Lawrence, Labrador Sea, Iqaluit, Hudson Bay). Populations of T. inermis in the N. Atlantic showed high connectivity, but were genetically isolated from the Beaufort/Chukchi Sea population. Population genetic diversity of T. inermis showed high haplotype and nucleotide diversity and no departures from neutral expectations. In contrast, T. raschii showed lower haplotype and nucleotide diversity, with highly significant departures from neutral expectations. A possible hypothesis is that T. raschii experienced a significant historical demographic event (e.g., population bottleneck), while T. inermis maintained a stable population over recent evolutionary history. The results provide new insights into population dynamics and implications for responses to climate change of these key euphausiid species for the Arctic Ocean. [ABSTRACT FROM AUTHOR]

How to identify the drivers of population connectivity remains a fundamental question in ecology and evolution. Answering this question can be challenging in aquatic environments where dynamic lake and ocean currents coupled with high levels of dispersal and gene flow can decrease the utility of modern population genetic tools. To address this challenge, we used RAD‐Seq to genotype 959 yellow perch (Perca flavescens), a species with an ~40‐day pelagic larval duration (PLD), collected from 20 sites circumscribing Lake Michigan. We also developed a novel, integrative approach that couples detailed biophysical models with eco‐genetic agent‐based models to generate "predictive" values of genetic differentiation. By comparing predictive and empirical values of genetic differentiation, we estimated the relative contributions for known drivers of population connectivity (e.g., currents, behavior, PLD). For the main basin populations (i.e., the largest contiguous portion of the lake), we found that high gene flow led to low overall levels of genetic differentiation among populations (FST = 0.003). By far the best predictors of genetic differentiation were connectivity matrices that were derived from periods of time when there were strong and highly dispersive currents. Thus, these highly dispersive currents are driving the patterns of population connectivity in the main basin. We also found that populations from the northern and southern main basin are slightly divergent from one another, while those from Green Bay and the main basin are highly divergent (FST = 0.11). By integrating biophysical and eco‐genetic models with genome‐wide data, we illustrate that the drivers of population connectivity can be identified in high gene flow systems. [ABSTRACT FROM AUTHOR]

While the effects of barriers to dispersal such as population declines, habitat fragmentation, and geographic distance have been well-documented in terrestrial wildlife, factors impeding the dispersal of highly vagile taxa such as seabirds are less well understood. The roseate tern (Sterna dougallii) is a globally distributed seabird species, but populations tend to be both fragmented and small, and the species is declining across most of its range. We evaluated structuring of roseate tern populations in the Northwestern Atlantic, the Caribbean, and the Azores using both microsatellite markers and single-nucleotide polymorphisms generated through targeted sequencing of Ultra-conserved Elements. For both marker types, we found significant genetic differentiation among all 3 populations and evidence for moderate contemporary unidirectional gene flow from the Caribbean to the Azores, but not between other populations. Within the Caribbean population, we found high rates of unidirectional migration from the Virgin Islands to Florida, potentially indicative of movement from source population to sink or an artifact of dispersal among other unsampled populations in the Caribbean region. These observations have significance for species persistence in the Atlantic, as our results indicate that loss of genetic diversity within populations is unlikely to be buffered by inflow of new alleles from other breeding populations. [ABSTRACT FROM AUTHOR]

In the context of anthropogenic global change, the study of landscape effects on species movement has garnered increasing attention. Landscape genetics offer indirect yet attractive means to capture species dispersal events across generations and their interaction with landscapes. However, landscape genetic patterns tend to exhibit significant variations across taxa and rely on the molecular makers adopted. Here, we investigated how landscapes influence population connectivity of an important tea pest, Empoasca onukii, using mitochondrial DNA sequences of 1,518 individuals from 57 locations in mainland China and offshore islands. We analyzed the inter-population genetic divergence and integrated multiple models to explicitly quantify their association with geographic distance, environmental heterogeneity, and landscape barriers. Analyses revealed a reduction in gene flow on islands, along the Yangtze River, and across mountainous regions of Western China. Models explicitly detected the predominant contributions of topographic complexity to population divergence and evidenced that mountains may serve as effective dispersal barriers for E. onukii. These results suggest that the limited gene exchange resulting from low population connectivity among mountains might generate the observed patterns of mitochondrial genetic variations, which contrasts the climate-related pattern previously observed on microsatellites. The findings enhance our comprehension of the evolutionary and epidemic dynamics of E. onukii, and highlight the demand of considering species-specific traits when studying population landscape genetic patterns. Moreover, the study emphasizes the necessity of employing multiple molecular markers to comprehensively elucidate landscape effects on population connectivity across diverse species for valuable insights into biodiversity conservation, pest control, and other management decisions.

Robust prediction of population responses to changing environments requires the integration of factors controlling population dynamics with processes affecting distribution. This is true everywhere but especially in polar pelagic environments. Biological cycles for many polar species are synchronised to extreme seasonality, while their distributions may be influenced by both the prevailing oceanic circulation and sea-ice distribution. Antarctic krill (krill, Euphausia superba) is one such species exhibiting a complex life history that is finely tuned to the extreme seasonality of the Southern Ocean. Dependencies on the timing of optimal seasonal conditions have led to concerns over the effects of future climate on krill’s population status, particularly given the species’ important role within Southern Ocean ecosystems. Under a changing climate, established correlations between environment and species may breakdown. Developing the capacity for predicting krill responses to climate change therefore requires methods that can explicitly consider the interplay between life history, biological conditions, and transport. The Spatial Ecosystem And Population Dynamics Model (SEAPODYM) is one such framework that integrates population and general circulation modelling to simulate the spatial dynamics of key organisms. Here, we describe a modification to SEAPODYM, creating a novel model – KRILLPODYM – that generates spatially resolved estimates of krill biomass and demographics. This new model consists of three major components: (1) an age-structured population consisting of five key life stages, each with multiple age classes, which undergo age-dependent growth and mortality, (2) six key habitats that mediate the production of larvae and life stage survival, and (3) spatial dynamics driven by both the underlying circulation of ocean currents and advection of sea-ice. We present the first results of KRILLPODYM, using published deterministic functions of population processes and habitat suitability rules. Initialising from a non-informative uniform density across the Southern Ocean our model independently develops a circumpolar population distribution of krill that approximates observations. The model framework lends itself to applied experiments aimed at resolving key population parameters, life-stage specific habitat requirements, and dominant transport regimes, ultimately informing sustainable fishery management.

Gravel-bed river floodplains occur in river corridors around the globe. One key habitat of these floodplains are alluvial aquifers that provide habitat for a wide range of obligate groundwater species. Multiple species of the amphipod genus Stygobromus commonly occur in alluvial aquifers, as well as in karstic phreatic systems, but few studies have investigated the population structure and its relevance to the biogeography of the genus. Using reduced representation genome sequencing, RAD-seq, we investigated the population structure and genetic connectivity of an undescribed Stygobromus species in several alluvial aquifers on floodplains of the Flathead River, Montana (USA). Amphipods were genetically similar (pairwise FST ranging from 0.0061 to 0.0092) at multiple sites within floodplains but three genetic clusters were segregated among floodplains (pairwise FST ranging from 0.0303 to 0.0547), suggesting some geographic isolation of populations. These floodplain aquifers are separated by bedrock canyons that could be migration barriers resulting in the observed spatial segregation of populations. [ABSTRACT FROM AUTHOR]

In recent years, starfish outbreaks occurred frequently in northern China, causing serious economic losses to marine aquaculture. The most common outbreak starfish species are Asterias amurensis and Asterina pectini- fera. We systematically reviewed the related studies by introducing the biological characteristics, current outbreaking status, and main impact of A. amurensis and A. pectinifera, and by discussing the causes, formation process, and migration pattern of starfish outbreaks in northern China. The early life history stage drives starfish outbreak. The increases of larval survival rate is the key leading to population outbreak. Population connectivity is the vital clue to reveal the source and dispersal of starfish populations. On this basis, we proposed several scientific and technical issues that should be addressed urgently, including the determination of the outbreak threshold, the trace- ability of starfish population, and the methods of monitoring, early warning and control. It would provide insight into the research on the mechanism of starfish outbreaks and the theoretical support for formulating prevention and treatment strategies for starfish outbreaks in northern China. [ABSTRACT FROM AUTHOR]

Context: Identification of areas with high connectivity is crucial for large carnivores' management and conservation, especially where landscape has been modified by human activities. Partially under legal hunting control, south-central Argentine pumas (Puma concolor) have been described to be structured into two distinct groups with an inverse correlation between gene flow and hunting pressure. Objectives: To further assess puma genetic structure and test whether isolation-by-distance and/or isolation-by-resistance could explain the previously reported putative correlation between gene flow and hunting pressure. Methods: We explored spatial segregation of pumas by testing for hierarchical structure within previously identified clusters, genetic differentiation among sampling regions, and isolation-by-distance among individuals. Using a land cover resistance-based approach, we assessed landscape influence on puma connectivity to analyze landscape permeability between sampling sites. Results: Our study added a third genetic group to the previously identified clusters, reporting significant genetic differentiation among sampling regions. We also observed a significant correlation among geographic and genetic distances, supporting genetic structure and gene flow pattern of connectivity. We identified a continuous high current flow across the landscape where shrublands are the primary habitat, whereas landscape permeability declined as grassland cover increases. Conclusions: Genetic structure and gene flow among south-central Argentine pumas can be partially related to the landscape connectivity pattern observed in the area. These results are extremely important for puma conservation in the area because the identification of high-permeability linkage zones can now be used to gather ecological fine-scale data to support more appropriate conservation strategies, aiming to preserve important dispersal areas for this apex predator. [ABSTRACT FROM AUTHOR]

Abstract Coastal Indigenous communities that rely on subsistence harvests are uniquely vulnerable to declines in nearshore species. The basket cockle Clinocardium nuttallii is among the favored foods of Indigenous people along the northwest Pacific coast of North America, yet localized declines in their abundance have led to interest in stock enhancement efforts. We used a population genomics approach to examine potential risks associated with stock enhancement of C. nuttallii in the southern Salish Sea, a large inland estuary that includes Puget Sound. More than 8000 single nucleotide polymorphisms across 349 individuals at 12 locations were assembled de novo using restriction site‐associated DNA sequencing. Results indicated that C. nuttallii within the southern Salish Sea were distinct from those along the outer Pacific coast (FST = 0.021–0.025). Within the southern Salish Sea, C. nuttallii populations appear to be well‐connected despite numerous potential impediments to gene flow; Hood Canal, which experiences the lowest flushing rates of all Puget Sound sub‐basins, was a minor exception to this strong connectivity. We found evidence of isolation by distance within the southern Salish Sea, but the slope of this relationship was shallow, and FST values were low (FST = 0.001–0.004). Meanwhile, outlier analyses did not support the hypothesis that southern Salish Sea sub‐populations are locally adapted. Estimates of effective population size had no upper bound, suggesting potentially very high adaptive capacity in C. nuttallii, but also making it difficult to assess potential reductions in effective population size resulting from stock enhancement. We present several strategies to augment cockle populations for subsistence harvest that would limit risk to the genetic diversity of wild cockle populations.

Larval transport by marine organisms is regulated by a combination of vertical swimming behavior and seasonal reproductive timing, but recent studies suggest horizontal swimming behaviors may also be important. Larvae in highly productive coastal upwelling regions are especially vulnerable to offshore transport and must employ effective dispersal “strategies” to return onshore to suitable settlement sites. Using a primitive-equation numerical model, we investigate how horizontal swimming affects nearshore larval supply and potential settlement and connectivity during climatological spring and summer in central California, a region of persistent coastal upwelling within the California Current System. The addition of shoreward swimming with speeds of 1–7 cm s−1 increases nearshore larval supply by a factor of 1.4–13, depending on the speed, timing of its onset, and the vertical swimming behavior of the larvae, which included both diel and ontogenetic vertical migrations. Nearshore larval supply increases approximately linearly with swimming speed integrated over the pelagic larval duration. While pelagic connectivity increases with shoreward swimming for all vertical behaviors investigated, spatial patterns of connectivity, when standardized by nearshore larval supply, are similar with and without horizontal behavior. Onshore swimming broadens the alongshore extent of areas that can act as effective source regions in central California, increasing potential dispersal distances 11–26%. A related statistic, the reverse pelagic connectivity, reveals Monterey Bay and the Gulf of the Farallones as important source regions that should be considered when adaptively managing California's network of marine protected areas.

Larval transport by marine organisms is regulated by a combination of vertical swimming behavior and seasonal reproductive timing, but recent studies suggest horizontal swimming behaviors may also be important. Larvae in highly productive coastal upwelling regions are especially vulnerable to offshore transport and must employ effective dispersal “strategies” to return onshore to suitable settlement sites. Using a primitive-equation numerical model, we investigate how horizontal swimming affects nearshore larval supply and potential settlement and connectivity during climatological spring and summer in central California, a region of persistent coastal upwelling within the California Current System. The addition of shoreward swimming with speeds of 1–7 cm s−1 increases nearshore larval supply by a factor of 1.4–13, depending on the speed, timing of its onset, and the vertical swimming behavior of the larvae, which included both diel and ontogenetic vertical migrations. Nearshore larval supply increases approximately linearly with swimming speed integrated over the pelagic larval duration. While pelagic connectivity increases with shoreward swimming for all vertical behaviors investigated, spatial patterns of connectivity, when standardized by nearshore larval supply, are similar with and without horizontal behavior. Onshore swimming broadens the alongshore extent of areas that can act as effective source regions in central California, increasing potential dispersal distances 11–26%. A related statistic, the reverse pelagic connectivity, reveals Monterey Bay and the Gulf of the Farallones as important source regions that should be considered when adaptively managing California's network of marine protected areas.

Planktonic larvae are thought to be very susceptible to offshore advection in upwelling regimes, increasing dispersal and decreasing recruitment. However, larvae of 42 species of nearshore benthic crustaceans primarily developed on the inner shelf at locations both in (98.5%) and away (99.8%) from a perennial upwelling center in the upwelling season of a recruitment-limited region characterized by persistent, strong, upwelling. During three cross-shelf cruises conducted at each location, larvae of 21 species remained on the inner shelf at both sites by occurring beneath seaward-flowing surface currents while larvae of other species migrated to midshelf (four species) or offshore (14 species) by initially developing near the surface. Postlarvae apparently returned to shore either deep in landward-flowing upwelled water or near the surface where behavior allows them to be transported shoreward by internal waves, diel wind cycles or wind relaxation events. Thus, recruitment limitation in upwelling regimes does not appear to be caused by larval mortality from offshore transport, requiring new research directions to advance our understanding of population dynamics, structure and connectivity.

Deep-sea shrimps from the family Alvinocarididae are prominent inhabitants of chemosynthesis-based habitats worldwide. However, their genetic diversity and population connectivity remain poorly understood due to limited sampling. To fill these knowledge gaps, we compared the population genetics of two vent- and seep-dwelling alvinocaridid species with overlapped geographic ranges between the South China Sea and the Manus Basin. Alvinocaris longirostris has a wider distribution, ranging from 35°N to 3°S and at depths of 930 to 1736 m, while Alvinocaris kexueae is more restricted, found between 16°N and 3°S at depths of 1300 to 1910 m. Our analysis, based on the mitochondrial cytochrome c oxidase subunit 1 gene, revealed that A. longirostris had lower genetic diversity and minimal genetic differentiation across eight disjoint vent and seep populations. In contrast, the narrower-distributed A. kexueae exhibited higher genetic diversity and significant genetic differentiation, with stronger gene flow observed from its Haima seep population to the Manus Basin vent population. In addition, both species appear to have experienced population expansion in their recent evolutionary history. These results suggest that A. longirostris and A. kexueae may possess distinct life-history traits that contribute to their differing distribution ranges in the Western Pacific., (© 2025 The Author(s). Integrative Zoology published by International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and John Wiley & Sons Australia, Ltd.)

IntroductionContinued discovery of “mismatch” patterns between population size and genetic diversity, involving wild species such as insects, amphibians, birds, mammals, and others, has raised issues about how population history, especially recent dynamics under human disturbance, affects currently standing genetic variation. Previous studies have revealed high genetic diversity in endangered Jankowski’s Bunting. However, it is unclear how the demographic history and recent habitat changes shape the genetic variation of Jankowski’s Bunting.MethodsTo explore the formation and maintenance of high genetic diversity in endangered Jankowski’s Bunting, we used a mitochondrial control region (partial mtDNA CR) and 15 nuclear microsatellite markers to explore the recent demographic history of Jankowski’s Bunting, and we compared the historical and contemporary gene flows between populations to reveal the impact of habitat change on population connectivity. Specifically, we aimed to test the following hypotheses: (1) Jankowski’s Bunting has a large historical Ne and a moderate demographic history; and (2) recent habitat change might have no significant impact on the species’ population connectivity.ResultsThe results suggested that large historical effective population size, as well as severe but slow population decline, may partially explain the high observable genetic diversity. Comparison of historical (over the past 4Ne generations) and contemporary (1–3 generations) gene flow indicated that the connectivity between five local populations was only marginally affected by landscape changes.DiscussionOur results suggest that high population connectivity and a moderate history of demographic decline are powerful explanations for the rich genetic variation in Jankowski’s Bunting. Although there is no evidence that the genetic health of Jankowski’s Bunting is threatened, the time-lag effects on the genetic response to recent environmental changes is a reminder to be cautious about the current genetic characteristics of this species. Where possible, factors influencing genetic variation should be integrated into a systematic framework for conducting robust population health assessments. Given the small contemporary population size, inbreeding, and ecological specialization, we recommend that habitat protection be maintained to maximize the genetic diversity and population connectivity of Jankowski’s Bunting.

Understanding how ocean currents affect larval transport is crucial for understanding population connectivity in sessile marine invertebrates whose primary dispersal opportunity occurs during the pelagic larval stage. This study used Lagrangian particle tracking experiments to examine population connectivity in New Zealand green-lipped mussels (Perna canaliculus) at the national scale. Predicted patterns of larval dispersal were compared to published multi-locus microsatellite data of observed population genetic structure. Estimates of oceanographic circulation correlated significantly with FST, and we conclude that hydrodynamic processes are important in driving genetic connectivity. However, no evidence was found for an oceanographic barrier to gene flow south of Cook Strait, an important feature of genetic structure observed across several marine invertebrate species. Discrepancies between genetic and biophysical data may be explained by several factors including the different timescales of connectivity described by the two methods and the impact of localised ecological conditions and corresponding adaptations in genetic structure not captured by the bipohysical model. Population genetic analyses provide empirical data on realised connectivity and Lagrangian particle tracking experiments reveal information about directionality and asymmetry of connections that often cannot be determined by molecular analyses alone, thus a multidisciplinary approach is recommended.

This study presents the first long-distance tracks of fin whales (Balaenoptera physalus) equipped with satellite transmitters off the Antarctic Peninsula. Southern Hemisphere fin whales were severely depleted by twentieth century industrial whaling, yet recently, they have returned to historical feeding grounds off the northern Antarctic Peninsula, forming large aggregations in austral summers. To date, our knowledge only extended to summer behaviour, while information regarding migration routes and the location of breeding and wintering grounds are lacking. During the austral autumn of 2021, we deployed nsatellite transmitters on four fin whales at Elephant Island. Two transmitters stopped working while the animals were still at the feeding grounds, while two continued to transmit during the transition from feeding activity to migration. Both migrating animals left the feeding ground on 15 April 2021, travelling northward into the Pacific and up along the Chilean coast. The most northerly position received before all tags stopped transmitting on 1 May 2021 was at 48°S. These tracks provide initial evidence of seasonal migratory routes and a first indication toward possible locations of winter destinations. This information, even if preliminary, is critical for investigations of population connectivity, population structure and the identification of breeding grounds of Southern Hemisphere fin whales.

Abstract Approximately 100 years ago, unregulated harvest nearly eliminated white‐tailed deer (Odocoileus virginianus) from eastern North America, which subsequently served to catalyze wildlife management as a national priority. An extensive stock‐replenishment effort soon followed, with deer broadly translocated among states as a means of re‐establishment. However, an unintended consequence was that natural patterns of gene flow became obscured and pretranslocation signatures of population structure were replaced. We applied cutting‐edge molecular and biogeographic tools to disentangle genetic signatures of historical management from those reflecting spatially heterogeneous dispersal by evaluating 35,099 single nucleotide polymorphisms (SNPs) derived via reduced‐representation genomic sequencing from 1143 deer sampled statewide in Arkansas. We then employed Simpson's diversity index to summarize ancestry assignments and visualize spatial genetic transitions. Using sub‐sampled transects across these transitions, we tested clinal patterns across loci against theoretical expectations of their response under scenarios of re‐colonization and restricted dispersal. Two salient results emerged: (A) Genetic signatures from historic translocations are demonstrably apparent; and (B) Geographic filters (major rivers; urban centers; highways) now act as inflection points for the distribution of this contemporary ancestry. These results yielded a statewide assessment of contemporary population structure in deer as driven by historic translocations as well as ongoing processes. In addition, the analytical framework employed herein to effectively decipher extant/historic drivers of deer distribution in Arkansas is also applicable for other biodiversity elements with similarly complex demographic histories.

Genetic data from nonmodel species can inform ecology and physiology, giving insight into a species' distribution and abundance as well as their responses to changing environments, all of which are important for species conservation and management. Moreover, reduced sequencing costs and improved long-read sequencing technology allows researchers to readily generate genomic resources for nonmodel species. Here, we apply Oxford Nanopore long-read sequencing and low-coverage (∼1x) whole genome short-read sequencing technology (Illumina) to assemble a genome and examine population genetics of an abundant tropical and subtropical fish, the hardhead silverside (Atherinomorus stipes). These fish are found in shallow coastal waters and are frequently included in ecological models because they serve as abundant prey for commercially and ecologically important species. Despite their importance in sub-tropical and tropical ecosystems, little is known about their population connectivity and genetic diversity. Our A. stipes genome assembly is about 1.2 Gb with comparable repetitive element content (∼47%), number of protein duplication events, and DNA methylation patterns to other teleost fish species. Among five sampled populations spanning 43 km of South Florida and the Florida Keys, we find little population structure suggesting high population connectivity. [ABSTRACT FROM AUTHOR]

Freshwater mussels are an important element of freshwater biodiversity and provide essential ecosystem services. However, mussels are among the most imperilled groups of organisms in the world. Although research has increased in recent years, information about range‐wide genetic diversity and historical demography of most species is lacking. One such species is Cumberlandian combshell Epioblasma brevidens, which is listed as endangered under the US Endangered Species Act.Genetic diversity of E. brevidens was analysed using a high‐resolution RADseq approach and included the previously overlooked Bear Creek population. Hypotheses were tested about population decline, comparative genetic diversity and population structure with model‐based approaches enabled by a genome‐scale dataset.Estimates of genetic differentiation among populations of E. brevidens were lower than past analyses, suggesting higher historical population connectivity than previously known. Demographic analyses indicate relatively recent splits among E. brevidens populations in the late Pleistocene to early Holocene, with clear founder effects in two populations. The Clinch River population has the highest genetic diversity and effective population size, despite demographic analyses revealing decline of this population since the Pleistocene. Analyses of both population structure and migration show evidence of past gene flow, but all populations are currently isolated by artificial barriers.Analyses indicate that populations began to decline before industrialization, but fragmentation and population extirpation has been exacerbated by modern habitat destruction. Relatively high genetic diversity in the Bear Creek population indicates that water quality improvements in the last 20 years have had a positive impact on population viability, offering promise for targeted management actions. In contrast, the Big South Fork population that has been presumed stable showed low genetic diversity and effective population size. Furthermore, genetic structure among sampled populations indicates that reintroduction efforts should use broodstock from as close to the reintroduction site as possible. [ABSTRACT FROM AUTHOR]

The otolith chemistry is one of the most commonly used tools to elucidate the structure of fish stocks. The correct application of this methodology depends on the fulfillment of several assumptions. One of the most relevant assumptions is that the otoliths and water chemistries vary at appropriate spatio-temporal scale in relation to the hypotheses being addressed. Due to the increase in the number of publications where this assumption is not properly considered, it is essential to discuss and order different concepts to contribute to the correct interpretation of the information provided by the otolith chemistry applied to the delimitation of stocks. Herein, the opportunity for dispersal concepts in otolith chemistry-based stock discrimination methods is discussed integrating the space-time scales, and biogeographic foundations. Additionally, a graphic guide was developed to facilitate hypothesis testing and their respective interpretations. This article encourages further use and attention on age and growth data, dispersal ability and life history, but further integration of the issue of biology versus management, as well as how the integration of other approaches may assist, is recommended, as most likely there will be no single approach to resolve stock structure. [ABSTRACT FROM AUTHOR]

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The queen conch, Aliger gigas, is an endemic and iconic marine gastropod of the Wider Caribbean region that has been harvested for thousands of years. Conch are slow-moving and require contact to mate; overfishing has reduced populations in many areas compromising its rates of reproduction. Long-range dispersal and mixing between distinct populations occur in the queen conch’s early life history stages, when pelagic larvae are transported by oceanic currents. Genetic studies suggest that gene flow between populations decreases as the distance between populations increases. Here, we assessed how the population connectivity of conch changes with spatially variable patterns of fishing exploitation by simulating larval dispersal and comparing the potential connectivity under an unexploited and a contemporary exploited reproductive scenario. Results demonstrate that reduced egg production, due to heterogeneous fishing pressure and localized depletion, significantly alters population connectivity patterns as well as the structuring of populations and metapopulations across the species’ range. This strongly suggests that estimates of contemporary demographic rates, together with estimates of reproductive output need to be included in population connectivity studies. The existence of self-sustained metapopulations of queen conch throughout the Wider Caribbean suggests that replenishment through larval dispersal occurs primarily within sub-regional spatial scales, emphasizing the need for regional and local conservation and management measures to build and protect reproductively active populations and nursery habitat across multiple jurisdictions.

Many marine species have been shown to be threatened by both ocean acidification and ocean warming which are reducing survival, altering behavior, and posing limits on physiology, especially during earlier life stages. The commercially important Florida stone crab, Menippe mercenaria, is one species that is affected by reduced seawater pH and elevated seawater temperatures. In this study, we determined the impacts of reduced pH and elevated temperature on the distribution of the stone crab larvae along the West Florida Shelf. To understand the dispersion of the larvae, we coupled the multi-scale ocean model SLIM with a larval dispersal model. We then conducted a connectivity study and evaluated the impacts of climate stressors by looking at four different scenarios which included models that represented the dispersion of stone crab larvae under: 1) present day conditions as modelled by SLIM for the temperature and NEMO-PISCES for the pH, 2) SSP1-2.6 scenario (-0.037 reduction in pH and +0.5°C compared to present-day conditions), 3) SSP2-4.5 scenario(-0.15 reduction in pH and +1.5°C) and 4) SSP5-8.5 scenario (-0.375 reduction in pH and +3.5°C). Our results show a clear impact of these climate change stressors on larval dispersal and on the subsequent stone crab distribution. Our results indicate that future climate change could result in stone crabs moving north or into deeper waters. We also observed an increase in the number of larvae settling in deeper waters (defined as the non-fishing zone in this study with depths exceeding 30 m) that are not typically part of the commercial fishing zone. The distance travelled by larvae, however, is likely to decrease, resulting in an increase of self-recruitment and decrease of the size of the sub-populations. A shift of the spawning period, to earlier in the spring, is also likely to occur. Our results suggest that habitats in the non-fishing zone cannot serve as a significant source of larvae for the habitats in the fishing zone (defined as water depth< 30 m) since there is very little exchange (< 5% of all exchanges) between the two zones. These results indicate that the stone crab populations in Florida may be susceptible to community fragmentation and that the management of the fishery should consider the potential impacts of future climate change scenarios.

Studies of mangrove population connectivity have focused primarily on global to regional scales and have suggested potential for long-distance connectivity, with archipelagos serving as stepping stones for trans-oceanic dispersal. However, the contribution of propagule dispersal to connectivity is still largely unknown, especially at local-scale. Identifying fine-scale propagule dispersal patterns unique to individual island systems is important to understand their contribution to global species distributions, and to select appropriate sizes and locations for mangrove conservation in archipelagos. Using population genetic methods and a release-recapture method employing GPS drifting buoys, we investigated the spatiotemporal scale of propagule dispersal of Rhizophora stylosa, one of the widely distributed mangrove species in the Indo-West Pacific. This study sought to quantify intra- and inter-island connectivity and to assess their contributions to oceanic scale dispersal of R. stylosa from the Ryukyu Archipelago, which spans over 545 km in southwestern Japan. Using 7 microsatellite markers, we tested 354 samples collected from 16 fringing populations on 4 islands. We identified 3 genetic populations, indicating distinct genetic structures comprising 3 distinguishable bioregions (genetic clusters). The western end of the archipelago receives relatively frequent migration (m > 0.1), but is genetically isolated from other sites. Based on genetic migration rates, we found that the central area of the archipelago serves as a stepping stone for southwestward, but not northeastward dispersal. On the other hand, with in-situ drifting buoys, we did not confirm prevailing dispersal directionality within the archipelago, instead confirming local eddies. Some buoys trapped in those eddies demonstrated potential for successful beaching from another island. A large portion of buoys were carried predominantly northeastward by the Kuroshio Current and drifted away from the coastal areas into the Pacific, contrary to local migrations. We found that the spatiotemporal scale of propagule dispersal is limited by the distance between islands (< 200km), propagule viability duration, and fecundity. Over all, recruitment does not occur frequently enough to unify the genetic structure in the archipelago, and the Ryukyu Archipelago is isolated in the center of the global mangrove distribution.

Population connectivity influences the distribution of genetic diversity and divergence along a species range, as the likelihood of extinction or differentiation increases in isolated populations. However, there is still poor understanding of the processes mediating inter-population dispersal in marine species that are sessile and lack planktonic life stages. One such case is the seagrass species Halodule wrightii, which produces basal seeds, although detached plants can drift. Along the tropical western coast of Africa, this species occurs in distant discontinuous habitats, raising the question of how interpopulation dispersal is mediated. The species is a key source of ecosystem functions including feeding large migratory grazers. This study aims to infer whether genetic differentiation of the seagrass H. wrightii along the western coast of Africa supports a hypothesis of predominant transportation of rafting seagrass by ocean currents, versus the hypothesis of biotic vectors of dispersal. Additional hypotheses were addressed concerning range-wide clonality and genetic diversity, assessed with microsatellite markers on populations of the west coast of Africa from Mauritania to Angola. Population genetic diversity and structure were compared with predictions from biophysical models of dispersal by oceanographic currents. The genetic data revealed low divergence among most populations, in strong contrast with predictions of very low probability of connectivity mediated by currents along the western African coastline. Moderate to high genotypic diversity showed important seed recruitment, but genetic and genotypic diversities were lower at range edges. Populations north and south of the equator were differentiated, and remarkably, so were neighboring equatorial populations despite their proximity. These results reveal independent sources of colonization of meadows in these islands, which are major habitat for migratory grazing green turtles, also supporting the hypothesis of biotically mediated seed transport. The importance of seagrass for conservation of endangered macrofauna has been widely reported; here we report evidence supporting the reciprocal role, that macrofauna protection can also plays a role in long-term survival and reproductive success of seagrass.