52,426 results on '"PROTEASES"'
Search Results
2. Protease-activated receptor 2: A promising therapeutic target for women’s cancers
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Shah, Himani, Fairlie, David P., and Lim, Junxian
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- 2025
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3. Evaluation of UHT milk spoilage caused by proteases from psychrophilic bacteria based on peptidomics
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Xu, Jinyu, Wang, Xiaodan, Zhao, Xiaoxuan, Cao, Hongyu, Wang, Yunna, Xie, Ning, Li, Xu, Pang, Xiaoyang, Lv, Jiaping, and Zhang, Shuwen
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- 2024
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4. One-year old European perch (Perca fluviatilis)-specific in vitro digestion studies in special regard to feed optimization
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Takács, Krisztina, Antal, Otilia, Nagy, András, Kertész, Attila, Fehér, Milán, and Bársony, Péter
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- 2024
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5. Role of proteases in oral carcinogenesis: Insights into the cancer degradome and therapeutic implications
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Sarode, Gargi S., Sarode, Sachin C., Ghone, Urmi, and Anand, Rahul
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- 2024
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6. Influence of yeast growth conditions and proteolytic enzymes on the amino acid profiles of yeast hydrolysates: Implications for taste and nutrition
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Sirisena, Sameera, Chan, Sitha, Roberts, Nic, Dal Maso, Sandra, Gras, Sally L., and J. O. Martin, Gregory
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- 2024
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7. Revisiting the effect of cholesteryl sulfate on clotting and fibrinolysis: Inhibition of human thrombin and other human blood proteases
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Al-Horani, Rami A.
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- 2024
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8. FEEDS, the Food wastE biopEptiDe claSsifier: From microbial genomes and substrates to biopeptides function
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Centurion, Victor Borin, Bizzotto, Edoardo, Tonini, Stefano, Filannino, Pasquale, Di Cagno, Raffaella, Zampieri, Guido, and Campanaro, Stefano
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- 2024
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9. The impact of heating and drying on protease activities of ruminant milk before and after in vitro infant digestion
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Leite, Juliana A.S., Montoya, Carlos A., Loveday, Simon M., Mullaney, Jane A., Loo, Trevor S., McNabb, Warren C., and Roy, Nicole C.
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- 2023
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10. Nonallosteric activation of posttranslational modification enzymes by active site-directed inhibitors
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Pesaresi, Alessandro
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- 2024
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11. Engineering inhibitory repeat domains of Pin-II type proteinase inhibitors indicate their high structural-functional tolerance to mutagenesis
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Barbole, Ranjit S., Joshi, Rakesh S., and Giri, Ashok P.
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- 2024
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12. Optimization and characterization studies of poultry waste valorization for peptone production using a newly Egyptian Bacillus subtilis strain.
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Saeed, Hajar, Ragaey, Anthony, Samy, Ziad, Ashraf, Viola, ElMostafa, Aly, Ahmad, Norhan, Bebawy, Enjy, Sorour, Nour ElHoda M., El-Sayed, Salwa M., Bakry, Ashraf, Ebeed, Naglaa, Elhariry, Hesham, El-Noby, Thanaa, and Abu-Hussien, Samah H.
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ESSENTIAL amino acids , *GLUTAMIC acid , *ASPARTIC acid , *AMINO acids , *PEPTONES - Abstract
Valorization of poultry waste is a significant challenge addressed in this study, which aimed to produce cost-effective and sustainable peptones from poultry waste. The isolation process yielded the highly potent proteolytic B.subtilis isolate P6, identified through 16S rRNA gene sequencing to share 94% similarity with the B.subtilis strain KEMET024 (GenBank accession number PP694485.1) and deposited in MIRCEN culture collection, Cairo, Egypt as EMCC 998871. It reached optimal production levels during 24 h of incubation, with biomass at 2.5 g/L, protease activity at 455 U/mL, and total amino acid (TAA) concentration at 208 mg/mL. For screening the most significant factors for peptone production, the Plackett–Burman design identified meat and bone meal concentration as the main significant factor influencing total amino acid reaching 420 mg/mL. BOX-Behnken design optimized peptone production increasing its production level by twofold to reach 2850 U/mL of protease activity and 580 mg/mL of total amino acids. The produced peptone demonstrated a superior amino acid profile compared to commercial peptones, with a remarkably higher total amino acid content of 621.556 mg/g and elevated levels of essential amino acids like aspartic acid (37.745%), glutamic acid (90.876%), glycine (117.272%), and alanine (50.373%). Characterization revealed optimal pH and temperature conditions of around pH 8 and 50–60°C, respectively, for the proteolytic activity. The Michaelis–Menten and Lineweaver–Burk plots determined a Km of 0.5 mg/mL and Vmax of 174.08 U/mL suggesting cooperative substrate binding and providing insights into the enzyme's maximum rate and affinity. The produced peptone exhibited minimal cytotoxicity at lower concentrations (≤ 1 mg/mL), with cell viability exceeding 94% against normal human skin fibroblast (HSF) cells. However, higher concentrations (≥ 3 mg/mL) displayed increased cytotoxic effects. Moreover, the results strongly indicate that the produced peptone, particularly at 0.5% concentration, is an effective nitrogen source for B. subtilis cultivation, demonstrating its potential for biotechnological applications. This study successfully valorized poultry waste by developing a sustainable and cost-effective alternative to commercial peptones, contributing to waste valorization and sustainable biotechnological processes. [ABSTRACT FROM AUTHOR]
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- 2025
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13. Tryptase and tumor angiogenesis.
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Ribatti, Domenico
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MAST cells ,TRYPTASE ,EXTRACELLULAR matrix ,TUMOR growth ,WOUND healing - Abstract
Tryptases represent the most abundant constituent of human mast cells, involved in extracellular matrix degradation, contributing to wound healing and metastasis. Moreover, most recently, it has been demonstrated that tryptase is angiogenic both in vitro and in vivo. Tryptase-positive mast cell number increases parallelly with increased microvascular density in both solid and hematological tumors. The objective and the scope of this review article are to emphasize the important role of tryptase as one of the principal effectors of tumor angiogenesis mediated by mast cells. In this context, tryptase inhibitors may be considered a novel therapeutic approach in cancer treatment. [ABSTRACT FROM AUTHOR]
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- 2025
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14. The MET Oncogene Network of Interacting Cell Surface Proteins.
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Gallo, Simona, Folco, Consolata Beatrice, and Crepaldi, Tiziana
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The MET oncogene, encoding the hepatocyte growth factor (HGF) receptor, plays a key role in tumorigenesis, invasion, and resistance to therapy, yet its full biological functions and activation mechanisms remain incompletely understood. A feature of MET is its extensive interaction network, encompassing the following: (i) receptor tyrosine kinases (RTKs); (ii) co-receptors (e.g., CDCP1, Neuropilin1); (iii) adhesion molecules (e.g., integrins, tetraspanins); (iv) proteases (e.g., ADAM10); and (v) other receptors (e.g., CD44, plexins, GPCRs, and NMDAR). These interactions dynamically modulate MET's activation, signaling, intracellular trafficking, and degradation, enhancing its functional versatility and oncogenic potential. This review offers current knowledge on MET's partnerships, focusing on their functional impact on signaling output, therapeutic resistance, and cellular behavior. Finally, we evaluate emerging combination therapies targeting MET and its interactors, highlighting their potential to overcome resistance and improve clinical outcomes. By exploring the complex interplay within the MET network of interacting cell surface proteins, this review provides insights into advancing anti-cancer strategies and understanding the broader implications of RTK crosstalk in oncology. [ABSTRACT FROM AUTHOR]
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- 2024
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15. Fermentation optimization and enzymatic property analysis of proteases produced by Bacillus amyloliquefaciens BS5582 and its application in cattle skin dehairing.
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REN Tao, NIU Chengtuo, ZHENG Feiyun, LIU Chunfeng, WANG Jinjing, and LI Qi
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TOTAL suspended solids ,BIOCHEMICAL oxygen demand ,BACILLUS amyloliquefaciens ,CHEMICAL oxygen demand ,ENZYMATIC analysis - Abstract
Proteases are considered as clean alternatives to replace chemicals to use in the leather dehairing process to avoid serious pollution. This study aimed to optimize the condition for protease production by Bacillus amyloliquefaciens BS5582 strain, to characterize the enzymatic properties and to evaluate its application in cattle hide dehairing. Results showed that the optimal enzyme production media by BS5582 strain were corn powder 50.0 g/L, soybean powder 40.0 g/L, Na
2 HPO4 ·12H2 O 6.0 g/L, KH2 PO4 3.0 g/L, MgSO4 1.8 g/L, and CaCl2 0.75 g/L, with the initial pH 6. The optimal fermentation condition was as follows:The fermentation temperature was 35 °C, the inoculation volume was 10%, and the loading volume was 15 mL. Under this condition, the crude enzyme activity of the enzyme solution reached (5 270. 59 ± 19.61) U/ mL, which was 21 folds higher than that before optimization. The optimum temperature and pH of the proteases produced by the BS5582 strain were 40 °C and 8.5, respectively. Mn2+ had a significant activation effect on protease activity while Fe2+ , Fe3+ , and PMSF significantly inhibited the enzyme activity. The protease showed good cattle skin hair removal ability with little collagen damage. Compared with traditional chemical dehairing, the application of proteases had no hair root remaining in the pores of cattle skin with the falling of intact hairs. The pollution indexes of the dehairing wastewater, such as total suspended solids, chemical oxygen demand, and five-day biochemical oxygen demand, were reduced by 87%, 39%, and 45%, respectively. This indicated that the proteases produced by B. amyloliquefaciens BS5582 were of great potential for application in the leather industry. [ABSTRACT FROM AUTHOR]- Published
- 2024
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16. Production and characterization of protease enzyme from Acinetobacter pittii using peanut meal as substrate.
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Reddy, Narendra, Parthiban, Bharath, and Seshagiri, Swetha
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PEANUT oil ,POTASSIUM nitrate ,BIOCHEMICAL substrates ,MICROBIAL growth ,MOLECULAR weights - Abstract
A significantly high protease enzyme yield of 617 U/ml was achieved with Acinetobacter pittii as the microorganism and peanut oil meal as the substrate. Peanut oil meal, which consists of proteins (40-60%) and carbohydrates (22-30%), serves as a sufficient source of nitrogen and carbon necessary for microbial growth and production of enzymes. Moreover, peanut meal offers the advantages of being affordable and available in large quantities, making the meal suitable for cost-effective enzyme production. In the present study, two bacterial strains and one fungal strain were selected to produce proteases utilizing peanut oil meal as the substrate. The experimental conditions during the enzyme production, including pH and temperature, were optimized. In addition, the substrate was enriched with various carbon and nitrogen sources. The microbial strains were streaked on nutritional agar (for bacteria) and potato dextrose agar (for fungus). Following an incubation period, the plates were stored at 4°C for further studies. The molecular weight of partially purified proteases of Acinetobacter pittii was found to be ≅ 95.5 kDa. Potassium nitrate was the most ideal nitrogen source (up to 411% increase in activity) and fructose was the best carbon source (425% increase). These enzymes exhibited excellent temperature tolerance and were capable of functioning over a wide pH range. Furthermore, the obtained proteases demonstrated ability to coagulate milk effectively, indicating their potential for various food-related applications. [ABSTRACT FROM AUTHOR]
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- 2024
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17. Assessing AF2's ability to predict structural ensembles of proteins.
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Riccabona, Jakob R., Spoendlin, Fabian C., Fischer, Anna-Lena M., Loeffler, Johannes R., Quoika, Patrick K., Jenkins, Timothy P., Ferguson, James A., Smorodina, Eva, Laustsen, Andreas H., Greiff, Victor, Forli, Stefano, Ward, Andrew B., Deane, Charlotte M., and Fernández-Quintero, Monica L.
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PROTEIN structure prediction , *CYTOSKELETAL proteins , *MOLECULAR dynamics , *PROTEIN conformation , *FREE surfaces - Abstract
Recent breakthroughs in protein structure prediction have enhanced the precision and speed at which protein configurations can be determined. Additionally, molecular dynamics (MD) simulations serve as a crucial tool for capturing the conformational space of proteins, providing valuable insights into their structural fluctuations. However, the scope of MD simulations is often limited by the accessible timescales and the computational resources available, posing challenges to comprehensively exploring protein behaviors. Recently emerging approaches have focused on expanding the capability of AlphaFold2 (AF2) to predict conformational substates of protein. Here, we benchmark the performance of various workflows that have adapted AF2 for ensemble prediction and compare the obtained structures with ensembles obtained from MD simulations and NMR. We provide an overview of the levels of performance and accessible timescales that can currently be achieved with machine learning (ML) based ensemble generation. Significant minima of the free energy surfaces remain undetected. [Display omitted] • Ensemble prediction quality depends on training input to AlphaFold 2 (AF2) • MSA subsampling predicts ensembles but may miss key protein conformations • Current ensembles cannot reliably determine free energy, conformations, or properties • Ensemble data is crucial to improve conformational model accuracy Riccabona et al. underscore the importance of accurate structural data in predicting protein structural ensembles. They note that although rapid methods like MSA subsampling can generate ensembles, they often overlook functionally significant conformations, thereby missing crucial kinetic and thermodynamic insights. [ABSTRACT FROM AUTHOR]
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- 2024
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18. Toxicological assays in the evaluation of safety assessment of fibrinolytic enzymes.
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Marques da Silva, Marllyn, Santana Moura, Yanara Alessandra, Leite, Arthur Hipólito Pereira, Souza, Kerolayne Lira Da Silva, Brandão Costa, Romero Marcos Pedrosa, Nascimento, Thiago Pajeú, Porto, Ana Lúcia Figueiredo, and Bezerra, Raquel Pedrosa
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FIBRINOLYTIC agents , *THROMBOSIS , *THROMBOLYTIC therapy , *DRUG development , *CARDIOVASCULAR diseases - Abstract
Cardiovascular diseases (CVDs) cause 30% of deaths each year, and in 2030, around 23.6 million people will die due to CVDs. The major challenge is to obtain molecules with minimal adverse reactions that can prevent and dissolve blood clots. In this context, fibrinolytic enzymes from diverse microorganism sources have been extensively investigated due to their potential to act directly and specifically on the fibrin clot, preventing side effects and performing potential thrombolytic effects. However, most researches focus on the purification and characterization of proteases, with little emphasis on the mechanism of action and pharmacological characteristics, including toxicity assays which are essential to assess safety and side effects. Therefore, this work aims to emphasize the importance of evaluations indicating the toxicological profile of fibrinolytic proteases through in vitro and in vivo tests. Both types of assays contribute as preclinical stage in drug development and are crucial for clinical applications. This scarcity creates arbitrary barriers to further studies. This work should further encourage the development of studies to ensure the safety and effectivity of fibrinolytic proteases. HIGHLIGHTS: Suggested pre-clinical trials aim to validate more specific methods for fibrinolytic enzymes; Current toxicity standards can be adapted to better assess the profile of fibrinolytic enzymes; The class of fibrinolytic enzymes must be carefully evaluated according to the method of application. [ABSTRACT FROM AUTHOR]
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- 2024
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19. Matrix metalloproteinase landscape in the imiquimod-induced skin inflammation mouse model.
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Noddeland, Heidi Kyung, Canbay, Vahap, Lind, Marianne, Savickas, Simonas, Jensen, Louise Bastholm, Petersson, Karsten, Malmsten, Martin, Koch, Janne, auf dem Keller, Ulrich, and Heinz, Andrea
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SKIN inflammation , *DRUGS , *DRUG delivery systems , *MATRIX metalloproteinases , *ANIMAL models in research - Abstract
Inflammation and autoimmunity are known as central processes in many skin diseases, including psoriasis. It is therefore important to develop pre-clinical models that describe disease-related aspects to enable testing of pharmaceutical drug candidates and formulations. A widely accepted pre-clinical model of psoriasis is the imiquimod (IMQ)-induced skin inflammation mouse model, where topically applied IMQ provokes local skin inflammation. In this study, we investigated the abundance of a subset of matrix metalloproteinases (MMPs) in skin from mice with IMQ-induced skin inflammation and skin from naïve mice using targeted proteomics. Our findings reveal a significant increase in the abundance of MMP-2, MMP-7, MMP-8, and MMP-13 after treatment with IMQ compared to the control skin, while MMP-3, MMP-9, and MMP-10 were exclusively detected in the IMQ-treated skin. The increased abundance and broader representation of MMPs in the IMQ-treated skin provide valuable insight into the pathophysiology of skin inflammation in the IMQ model, adding to previous studies on cytokine levels using conventional immunochemical methods. Specifically, the changes in the MMP profiles observed in the IMQ-treated skin resemble the MMP patterns found in skin lesions of individuals with psoriasis. Ultimately, the differences in MMP abundance under IMQ-induced inflammation as compared to non-inflamed control skin can be exploited as a model to investigate drug efficacy or performance of drug delivery systems. [Display omitted] • MMP landscape in skin inflammation mouse model analyzed for the first time using MS. • Increase in MMP-2, MMP-7, MMP-8 and MMP-13 abundance in inflamed mouse skin samples. • MMP-3, MMP-9, and MMP-10 were exclusively detected in inflamed mouse skin. • MMP profiles in inflamed mouse skin resemble those in skin of psoriasis patients. [ABSTRACT FROM AUTHOR]
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- 2024
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20. Thrombin stories in the gut.
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Vergnolle, Nathalie
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INFLAMMATORY bowel diseases , *INTESTINAL physiology , *PROTEASE-activated receptors , *BLOOD coagulation , *INTESTINAL diseases - Abstract
Many studies have demonstrated the involvement of proteases in gut physiology and pathophysiology over the recent years. Among them, thrombin has appeared for a long time as an old player only involved in blood clotting upon tissue injury. The fact that thrombin receptors (Protease-Activated Receptors-1 and -4) are expressed and functional in almost all cell types of the gut, contributing to barrier, immune or motility functions, suggested that thrombin could actually be at the crossroad of intestinal physiology. Recent work has unraveled the constitutive release of active thrombin by intestinal epithelial cells, opening new research avenues on the role of thrombin in the gut. These roles are considered in the present review, as well as the regulation of thrombin in the gut. The potential of thrombin as a target for treatments of intestinal pathologies is also discussed here. • Physiology and Pathophysiology of Thrombin in the Intestine. • Thrombin: a Gut protease with pleiotropic mechanisms. • Thrombin is a major signal to microbiota and in inflammatory bowel diseases. [ABSTRACT FROM AUTHOR]
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- 2024
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21. Depletion of calpain2 accelerates epithelial barrier establishment and reduces growth factor-induced cell scattering
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Rasl, Jan, Caslavsky, Josef, Grusanovic, Josipa, Chvalova, Vera, Kosla, Jan, Adamec, Jiri, Grousl, Tomas, Klimova, Zuzana, and Vomastek, Tomas
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- 2024
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22. Graft copolymers of collagen and acrylic monomers--Reagents for sizing of cotton yarn
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Rafikov, Adham Salimovich, Ibodulloyev, Bekzod Shuxrat Ugli, Yasinskaya, Nataliya Nikolayevna, and Khakimova, Mukaddas Shamuratovna
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Amides ,Proteases ,Acrylic acid ,Graft copolymers ,Collagen ,Methamphetamine ,Chemical tests and reagents ,Engineering and manufacturing industries ,Science and technology - Abstract
A new highly effective sizing reagent based on grafted collagen copolymers has been proposed for cotton yarn. The copolymers were synthesized by reacting an aqueous solution of collagen with acrylic monomers--acrylic, matacrylic acids, and their amides in the presence of potassium persulfate. Based on Scanning electron microscopy--Energy dispersive (SEM-EDS) analysis data, the composition of the copolymers was determined. Unsaturated acids are more actively grafted onto collagen than their amides. When a polymer film is formed from a solution of a collagen copolymer with (meth)acrylic acid, microcracks appear on the surface of the sample; microcracks are absent in films of copolymers with (meth)acrylamide. Films of copolymers, especially methacrylamide, are quite flexible and contribute to a significant improvement in the properties of the yarn. The tensile strength of yarn sized with copolymers increases by 20%-65% compared to unsized yarn, and by 13%--38% compared to yarn sized with a starch solution. At the same time, the relative tensile elongation of the experimental yarn improves by 14%-58%, while this property of starch-size yarn deteriorates by 14%-22% compared to unsized yarn. The complete removal of graft copolymers from the surface of the yarn in the process of biochemical desizing using the enzyme protease is shown. Highlights * Graft copolymerization of (meth)aciylamide with collagen was carried out. * Grafting is initiated by the interaction of collagen with potassium persulfate. * The synthesized copolymers are effective sizing reagents for cotton yarn. * The copolymer with poly(meth)acrylamide forms a flexible and stable film. * The protease enzyme completely removes the size from the surface of the yarn. KEYWORDS acrylic monomer, collagen, cotton yam, graft copolymer, morphology, sizing, 1 | INTRODUCTION The preparation of cotton yarn for weaving is a technological link between the production of yarn and the production of fabric, therefore it plays a significant role [...]
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- 2024
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23. Comparative secretome analysis unveils species-specific virulence factors in Elsinoe perseae, the causative agent of the scab disease of avocado (Persea americana)
- Author
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Biju Vadakkemukadiyil Chellappan
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cazymes ,cell wall–degrading enzymes ,effector ,elsinoe perseae ,proteases ,secretome ,Microbiology ,QR1-502 - Abstract
The scab disease, caused by Elsinoe perseae, poses a significant risk to avocado (Persea americana) production in countries with warm and humid climates. Although the genome has been published, the precise virulence factors accountable for the pathogenicity of E. perseae have not yet been determined. The current study employed an in silico approach to identify and functionally characterize the secretory proteins of E. perseae. A total of 654 potential secretory proteins were identified, of which 190 were classified as carbohydrate-active enzymes (CAZymes), 49 as proteases, and 155 as potential effectors. A comparison to six other closely related species identified 40 species-specific putative effectors in E. perseae, indicating their specific involvement in the pathogenicity of E. perseae on avocado. The data presented in this study might be valuable for further research focused on understanding the molecular mechanisms that contribute to the pathogenicity of E. perseae on avocado.
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- 2024
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24. Proteolytic degradation of seed proteins of vetch species (Vicia L. subgenus Vicia) of section Peregrinae Kupicha during SDS-electrophoresis and its prevention
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A. V. Konarev, E. E. Eggi, and T. G. Aleksandrova
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storage proteins ,sds electrophoresis ,species identification ,proteases ,proteolysis ,Biotechnology ,TP248.13-248.65 - Abstract
Background. Due to its simplicity and good reproducibility, SDS-electrophoresis of seed proteins is widely used for investigating the gene pool of legumes and other plants, for species and varietal identification, analyzing the intraspecific variability, and registering collection material. The data obtained by this method agree well with the DNA analysis results complement them. Typically, legume seed proteins, including representatives of the genus Vicia L., show clear informative SDS electrophoretic profiles. When analyzing seed accessions of vetch species of the section Peregrinae Kupicha using standard approaches previously developed at VIR and approved by ISTA (the International Seed Testing Association), clear electrophoretic protein profiles could not be obtained for many accessions. This called into question the applicability of standard approaches to identifying vetch species in the section Peregrinae. The objective of the work was to clarify the nature of seed proteins degradation in representatives of the Peregrinae section and to find ways to prevent it to ensure the possibility of carrying out species identification and registration of all accessions in the vetch collection using a unified approach. Material and methods. Seed proteins of a number of vetch species Vicia L. from sections Bithynicae (B. Fedtsch.) Maxted, Hypechusa (Alef.) Aschers. et Graebner, Microcarinae Maxted and Peregrinae, members of the subgenus Vicia, were analyzed by SDS-electrophoresis using the standard method of protein extraction from flour with 0.025 M Tris-glycine buffer pH 8.3 at room temperature and its modifications, including heating the extract at 80°C or 100°C with or without the addition of 2-mercaptoethanol, as well as the addition of cysteine and serine protease inhibitors. Results and discussion. An analysis of seed proteins of representatives of most sections of the subgenus Vicia yielded informative species-specific protein profiles, whereas species of the section Peregrinae were characterized by the protein profiles, which indicated protein degradation, and species of this section differed in the frequency of such profile occurrence. While such profiles were obtained for all seeds of seven accessions of V. aintabensis Boiss & Hausskn. ex Boiss differing in geographical origin, year and place of regeneration, and 12 out of 13 of V. peregrina L. accessions demonstrated profiles of partially or completely degraded proteins, complete seed protein profiles were obtained for six out of nine V. michauxii Sprengel accessions. A change in conditions for protein isolation, namely replacement of their extraction from flour with Tris-glycine buffer pH 8.3 at room temperature with extraction in the same buffer by a short-term heating at 100°C in the presence of 2-mercaptoethanol, made it possible to obtain complete protein profiles for all accessions representing the section Peregrinae. The protein profiles of representatives of other vetch sections, as well as the profile of soybean proteins used as a standard for legume species identification, did not differ from the original ones under the modified conditions. Conclusions. The obtained results suggest that protein degradation in species of the Peregrinae section is associated with the abnormal activity of endogenous seed proteases under standard protein extraction conditions, and this trait is determined genotypically. A new modification of the method for isolating proteins from seeds makes it possible to apply the generally accepted approaches based on SDS-electrophoresis in the analysis of the gene pool of the Peregrinae section of the subgenus Vicia, as well as other vetch species.
- Published
- 2024
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25. New Bacillus paralicheniformis strain with high proteolytic and keratinolytic activity
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Saniya Aktayeva and Bekbolat Khassenov
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Bacillus paralicheniformis T7 ,Proteases ,Keratinases ,Medicine ,Science - Abstract
Abstract Bacillus paralicheniformis T7, which exhibits high proteolytic and keratinolytic activities, was isolated from soil in Kazakhstan. Its secreted proteases were thermostable and alkaline, demonstrating maximum activity at 70 °C and pH 9.0. The proteases and keratinases of this strain were sensitive to Ni2+, Co2+, Mn2+, and Cd2+, with Cu2+, Co2+ and Cd2+ negatively affecting keratinolytic activity, and Fe3+ ions have a strong inhibitory effect on proteolytic and keratinolytic activity. Seven proteases were identified in the enzymatic extract of B. paralicheniformis T7: four from the serine peptidase family and three from the metallopeptidase family. The proteases hydrolyzed 1 mg of casein, hemoglobin, gelatin, ovalbumin, bovine serum albumin, or keratin within 15 s to 30 min. The high keratinolytic activity of this strain was confirmed through the degradation of chicken feathers, horns, hooves, wool, and cattle hide. Chicken feathers were hydrolyzed in 4 days, and the degrees of hydrolysis for cattle hide, wool, hoof, and horn after 7 days of cultivation were 97.2, 34.5, 29.6, and 3.6%, respectively. During submerged fermentation with feather medium in a laboratory bioreactor, the strain secreted enzymes with 249.20 ± 7.88 U/mL protease activity after 24 h. Thus, B. paralicheniformis T7 can be used to produce proteolytic and keratinolytic enzymes for application in processing proteinaceous raw materials and keratinous animal waste.
- Published
- 2024
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26. Human intraepithelial mast cell differentiation and effector function are directed by TGF-[beta] signaling
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Derakhshan, Tahereh, Hollers, Eleanor, Perniss, Alex, Ryan, Tessa, McGill, Alanna, Hacker, Jonathan, Bergmark, Regan W., Bhattacharyya, Neil, Lee, Stella E., Maxfield, Alice Z., Roditi, Rachel E., Bankova, Lora, Buchheit, Kathleen M., Laidlaw, Tanya M., Boyce, Joshua A., and Dwyer, Daniel F.
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Proteases ,Inflammation ,Transforming growth factors ,Cell differentiation ,Health care industry - Abstract
Mast cells (MCs) expressing a distinctive protease phenotype (MCTs) selectively expand within the epithelium of human mucosal tissues during type 2 (T2) inflammation. While [MC.sub.T]s are phenotypically distinct from subepithelial MCs ([MC.sub.TC]s), signals driving human [MC.sub.T] differentiation and this subset's contribution to inflammation remain unexplored. Here, we have identified TGF-[beta] as a key driver of the [MC.sub.T] transcriptome in nasal polyps. We found that short-term TGF-[beta] signaling alters MC cell surface receptor expression and partially recapitulated the in vivo [MC.sub.T] transcriptome, while TGF- [beta] signaling during MC differentiation upregulated a larger number of [MC.sub.T]-associated transcripts. TGF-[beta] inhibited the hallmark [MC.sub.TC] proteases chymase and cathepsin G at both the transcript and protein level, allowing selective in vitro differentiation of [MC.sub.T]s for functional study. We identified discrete differences in effector phenotype between in vitro-derived [MC.sub.T]s and [MC.sub.TC]s, with [MC.sub.T]s exhibiting enhanced proinflammatory lipid mediator generation and a distinct cytokine, chemokine, and growth factor production profile in response to both innate and adaptive stimuli, recapitulating functional features of their tissue-associated counterpart MC subsets. Thus, our findings support a role for TGF-[beta] in promoting human [MC.sub.T] differentiation and identified a discrete contribution of this cell type to T2 inflammation., Introduction Mast cells (MCs) are tissue-resident granulocytes thought to play key roles in type 2 (T2) inflammatory diseases, including asthma and chronic rhinosinusitis (CRS). MCs originate from rare circulating progenitors [...]
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- 2025
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27. Protease activated receptor 2 as a novel druggable target for the treatment of metabolic dysfunction-associated fatty liver disease and cancer.
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Villano, Gianmarco and Pontisso, Patrizia
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HEPATITIS ,PROTEASE-activated receptors ,METABOLIC disorders ,LIVER diseases ,INSULIN resistance - Abstract
Metabolic dysfunction-associated fatty liver disease (MAFLD) is spreading worldwide, largely due to unhealthy lifestyles that contribute to the rise in diabetes, metabolic syndrome, and obesity. In this situation, the progression of injury to metabolic steatohepatitis can evolve to cirrhosis and, eventually, to hepatocellular carcinoma (HCC). It is well known that serine protease enzymes with different functions in cellular homeostasis act as signaling molecules that regulate liver inflammation by activating the protease-activated receptors (PARs) family members, expressed on the cellular plasma membrane. Among them, PAR2 plays a central role in the activation of signaling pathways in response to changes in the extracellular microenvironment. Experimental data have provided evidence that PAR2 is involved not only in inflammatory response but also in insulin resistance, lipid metabolism, and cancer. The major aims of this narrative review are addressed to assess PAR2 involvement in inflammation, metabolism, and liver disease progression and to explore possible therapeutic strategies, based on PAR2 inhibition, in order to prevent its biological effects in the context of MAFLD and cancer. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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28. Development and Application of Reversible and Irreversible Covalent Probes for Human and Mouse Cathepsin‐K Activity Detection, Revealing Nuclear Activity.
- Author
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Dey, Gourab, Sinai‐Turyansky, Reut, Yakobovich, Evalyn, Merquiol, Emmanuelle, Loboda, Jure, Sridharan, Nikhila, Houri‐Haddad, Yael, Polak, David, Yona, Simon, Turk, Dusan, Wald, Ori, and Blum, Galia
- Subjects
- *
DENTAL implants , *BONE remodeling , *DRUG development , *EXTRACELLULAR matrix , *IMMUNE response - Abstract
Cathepsin‐K (CTSK) is an osteoclast‐secreted cysteine protease that efficiently cleaves extracellular matrices and promotes bone homeostasis and remodeling, making it an excellent therapeutic target. Detection of CTSK activity in complex biological samples using tailored tools such as activity‐based probes (ABPs) will aid tremendously in drug development. Here, potent and selective CTSK probes are designed and created, comparing irreversible and reversible covalent ABPs with improved recognition components and electrophiles. The newly developed CTSK ABPs precisely detect active CTSK in mouse and human cells and tissues, from diseased and healthy states such as inflamed tooth implants, osteoclasts, and lung samples, indicating changes in CTSK's activity in the pathological samples. These probes are used to study how acidic pH stimulates mature CTSK activation, specifically, its transition from pro‐form to mature form. Furthermore, this study reveals for the first time, why intact cells and cell lysate exhibit diverse CTSK activity while having equal levels of mature CTSK enzyme. Interestingly, these tools enabled the discovery of active CTSK in human osteoclast nuclei and in the nucleoli. Altogether, these novel probes are excellent research tools and can be applied in vivo to examine CTSK activity and inhibition in diverse diseases without immunogenicity hazards. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
29. Isolation and Characterization of Protease Producing Novel Burkholderia sp.PS1 from Soil Sample and its Protease Production Optimization Studies.
- Author
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R., Raja Srinath, K., Sanjeev Kumar, and Pindi, Pavan Kumar
- Subjects
- *
BURKHOLDERIA cenocepacia , *SOIL sampling , *BACILLUS (Bacteria) , *SKIM milk , *BURKHOLDERIA , *AGAR - Abstract
Extracellular proteases, due to their commercial, industrial applications have become significant and targeted for scientific research during current research. Our present report states about unfolding of potential proteases from soil sample. Even though there are diversified protease positive microorganisms was reported but still few are Burkholderia Cenocepacia proteases are unrevealed. Selective soil sample was collected from different places of Mahbubnagar Telangana state for screening and isolated potential protease producing microorganisms. 10-5 diluted sample spread over skim milk agar (High Media) and selected 108 protease positive organisms from screening. selected isolates are pushed to secondary screening, picked highest zone of hydrolysing microorganism was identified through 16s rRNA generated 1358bp amplicon was forwarded to NCBI blast, 98% homology Burkholderia Cenocepacia (Bks) submitted and generated accession number MH290479 with optimized Bks protease production showing maximum production at temperature 30o C, PH -7, Inoculum size 3%, 1% glucose as carbon source,0.5% Gelatine protein and Zn metal ion was recorded. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
30. Staphylococcus aureus Proteases: Orchestrators of Skin Inflammation.
- Author
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Kline, Sabrina N., Saito, Yoshine, and Archer, Nathan K.
- Subjects
- *
SOFT tissue infections , *SKIN inflammation , *ATOPIC dermatitis , *STAPHYLOCOCCUS aureus , *GRAM-positive bacteria - Abstract
Skin homeostasis relies on a delicate balance between host proteases and protease inhibitors along with those secreted from microbial communities, as disruption to this harmony contributes to the pathogenesis of inflammatory skin disorders, including atopic dermatitis and Netherton's syndrome. In addition to being a prominent cause of skin and soft tissue infections, the gram-positive bacterium Staphylococcus aureus is a key player in inflammatory skin conditions due to its array of 10 secreted proteases. Herein we review how S. aureus proteases augment the development of inflammation in skin disorders. These mechanisms include degradation of skin barrier integrity, immune dysregulation and pruritis, and impairment of host defenses. Delineating the diverse roles of S. aureus proteases has the potential to reveal novel therapeutic strategies, such as inhibitors of proteases or their cognate target, as well as neutralizing vaccines to alleviate the burden of inflammatory skin disorders in patients. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
31. A snapshot of the Physcomitrella N-terminome reveals N-terminal methylation of organellar proteins.
- Author
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Hoernstein, Sebastian N. W., Schlosser, Andreas, Fiedler, Kathrin, van Gessel, Nico, Igloi, Gabor L., Lang, Daniel, and Reski, Ralf
- Abstract
Key message: Analysis of the N-terminome of Physcomitrella reveals N-terminal monomethylation of nuclear-encoded, mitochondria-localized proteins. Post- or co-translational N-terminal modifications of proteins influence their half-life as well as mediating protein sorting to organelles via cleavable N-terminal sequences that are recognized by the respective translocation machinery. Here, we provide an overview on the current modification state of the N-termini of over 4500 proteins from the model moss Physcomitrella (Physcomitrium patens) using a compilation of 24 N-terminomics datasets. Our data reveal distinct proteoforms and modification states and confirm predicted targeting peptide cleavage sites of 1,144 proteins localized to plastids and the thylakoid lumen, to mitochondria, and to the secretory pathway. In addition, we uncover extended N-terminal methylation of mitochondrial proteins. Moreover, we identified PpNTM1 (P. patens alpha N-terminal protein methyltransferase 1) as a candidate for protein methylation in plastids, mitochondria, and the cytosol. These data can now be used to optimize computational targeting predictors, for customized protein fusions and their targeted localization in biotechnology, and offer novel insights into potential dual targeting of proteins. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
32. Comparative secretome analysis unveils species-specific virulence factors in Elsinoe perseae, the causative agent of the scab disease of avocado (Persea americana).
- Author
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Chellappan, Biju Vadakkemukadiyil
- Subjects
GLOBAL warming ,PROTEOLYTIC enzymes ,ENZYMES ,PROTEINS ,COMPARATIVE studies ,AVOCADO - Abstract
The scab disease, caused by Elsinoe perseae., poses a significant risk to avocado (Persea americana) production in countries with warm and humid climates. Although the genome has been published, the precise virulence factors accountable for the pathogenicity of E. perseae have not yet been determined. The current study employed an in silico approach to identify and functionally characterize the secretory proteins of E. perseae. A total of 654 potential secretory proteins were identified, of which 190 were classified as carbohydrate-active enzymes (CAZymes), 49 as proteases, and 155 as potential effectors. A comparison to six other closely related species identified 40 species-specific putative effectors in E. perseae, indicating their specific involvement in the pathogenicity of E. perseae on avocado. The data presented in this study might be valuable for further research focused on understanding the molecular mechanisms that contribute to the pathogenicity of E. perseae on avocado. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
33. Multi-enzymatic degradation potential against wastes by the novel isolate of Bacillus.
- Author
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Bose K, Jagadeesh Chandra and Sarwan, Jyoti
- Abstract
Biowaste management is one of the major concerns for the effective processing of the production of toxic and value-added products. Biowaste is generally either by-products or end products of numerous bioprocess industries, including agriculture, food, dairy, textile, paper, pulp, or biopharma industries. They may not only consist of numerous varieties of toxic substances but also contain the most useful energy sources, especially celluloses, which are abundant energy-rich derivatives from agricultural waste. This biowaste mismanaged, especially in agriculture bases countries like India and Asian countries by either burning or dumping, may cause severe environmental pollution. Microbial degradation of waste will be the best appreciable, cost-effective, and eco-friendly process, and the majority of biowaste can be easily degraded by several microbial communities, and biowaste can be effectively converted into less toxic or nontoxic. Among them, certain bacteria target plant-based celluloses which are acting as the main structural component of the majority parts of plant cells by producing cellulases. As this process results in diverse energy-rich derivatives such as cellobiohydrolase and glucose, further, these can be used for bioethanol production. To hydrolyse the polymeric structure of glucose that is abundant in most plant-based wastes, the enzyme cellulases are the most essential and categorised into four classes:exoglucanase, endoglucanase, cellobiohydrolases, and glucosidases. These will act at different sites of the cellulose for further degradation into glucose, a chief source for bioethanol production. There are numerous natural bacterial communities with higher potentials for the degradation of biowaste, especially cellulosic waste into energy-rich sugars highlighted besides other waste decomposition. It would be a futuristic approach to enhance the catalytic activity of microbial enzymes that convert cellulose into glucose for biofuel production. Similarly, there are other bacteria with protease activity on biowastes like soya, whey, and other food and dairy waste. This study emphasised on a natural isolate with multipotent efficiency in the degradation of numerous waste materials and optimisation for the degradation of numerous raw materials. This attempt will be contributing to the best biowaste utilisation and management of various production of biofuel. This study will emphasise the versatile activities of bacterial enzymes of a novel isolate, Bacillus which can lead to futuristic applications for the conversion of domestic waste into energy sources. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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34. Computational analysis of propeptide‐containing proteins and prediction of their post‐cleavage conformation changes.
- Author
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Pei, Jimin, Kinch, Lisa N., and Cong, Qian
- Abstract
A propeptide is removed from a precursor protein to generate its active or mature form. Propeptides play essential roles in protein folding, transportation, and activation and are present in about 2.3% of reviewed proteins in the UniProt database. They are often found in secreted or membrane‐bound proteins including proteolytic enzymes, hormones, and toxins. We identified a variety of globular and nonglobular Pfam domains in protein sequences designated as propeptides, some of which form intramolecular interactions with other domains in the mature proteins. Propeptide‐containing enzymes mostly function as proteases, as they are depleted in other enzyme classes such as hydrolases acting on DNA and RNA, isomerases, and lyases. We applied AlphaFold to generate structural models for over 7000 proteins with propeptides having no less than 20 residues. Analysis of residue contacts in these models revealed conformational changes for over 300 proteins before and after the cleavage of the propeptide. Examples of conformation change occur in several classes of proteolytic enzymes in the families of subtilisins, trypsins, aspartyl proteases, and thermolysin‐like metalloproteases. In most of the observed cases, cleavage of the propeptide releases the constraints imposed by the covalent bond between the propeptide and the mature protein, and cleavage enables stronger interactions between the propeptide and the mature protein. These findings suggest that post‐cleavage propeptides could play critical roles in regulating the activity of mature proteins. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
35. Isolation of Bacillus altitudinis 5-DSW with Protease Activity from Deep-Sea Mineral Water and Preparation of Functional Active Peptide Fractions from Chia Seeds.
- Author
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Jin, Hao, Lee, Eun-Gyo, Khalid, Faiza, Jo, Seung-Wha, and Baik, Sang-Ho
- Subjects
SEED proteins ,MINERAL waters ,MINERALS in water ,PEPTIDES ,PROTEIN hydrolysates - Abstract
In this study, we successfully isolated Bacillus strains with high protease activity from deep-sea mineral water in Korea and used them to obtain functional peptide fractions from chia seeds. The obtained Bacillus strains showed a high similarity of 99% with B. altitude with a long rod type (named B. altitudinis 5-DSW) and high protease activity at 40 °C, and 70% of the activity remained even at 70 °C. The defatted chia seed protein (15–50 kDa) was treated with crude protease from B. altitudinis 5-DSW and digested into small peptides below 20 kDa. The obtained chia seed peptides showed 3 times and 1.5 times higher antioxidant activity in DPPH and ABT radical scavenging assays, respectively. Moreover, chia seed peptides showed enhanced AChE inhibitory activity with an IC
50 value of 14.48 ± 0.88 μg/mL and BChE inhibition activity with an IC50 value of 10.90 ± 0.80 μg/mL. Our results indicate that the newly isolated B. altitudinis 5-DSW and chia seed protein hydrolysates have potential applications in biotechnology and functional food development, enhancing the nutritional quality and value-added utilization of chia byproducts. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
36. PrP is cleaved from the surface of mast cells by ADAM10 and proteases released during degranulation.
- Author
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Willows, Steven D, Vliagoftis, Harissios, Sim, Valerie L, and Kulka, Marianna
- Subjects
MAST cells ,PRIONS ,CELL physiology ,ASTHMATICS ,PROTEASE inhibitors - Abstract
While several functions of the endogenous prion protein have been studied, the homeostatic function of prion protein is still debated. Notably, prion protein is highly expressed on mast cells, granular immune cells that regulate inflammation. When activated, mast cells shed prion protein, although the mechanism and consequences of this are not yet understood. First, we tested several mast cell lines and found that, while prion protein was almost always present, the total amount differed greatly. Activation of mast cells induced a cleavage of the N-terminal region of prion protein, and this was reduced by protease inhibitors. Exogenous mast cell proteases caused a similar loss of the prion protein N-terminus. Additionally, mast cells shed prion protein in an ADAM10-dependent fashion, even in the absence of activation. Our results suggest that prion protein is cleaved from resting mast cells by ADAM10 and from activated mast cells by mast cell proteases. Prion protein also appears to affect mast cell function, as Prnp
−/− bone marrow–derived mast cells showed lower levels of degranulation and cytokine release, as well as lower levels of both FcεRI and CD117. Finally, we sought to provide clinical relevance by measuring the levels of prion protein in bodily fluids of asthmatic patients, a disease that involves the activation of mast cells. We found an N-terminal fragment of prion protein could be detected in human sputum and serum, and the amount of this prion protein fragment was decreased in the serum of patients with asthma. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
37. Sardine Processing Waste: Biological Treatment Strategies and Their Implications.
- Author
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Ziagova, Maria G., Tzekaki, Elena E., Avgoulas, Dimitrios I., Tsiridis, Vasilios, Karali, Evangelia, Pantazaki, Anastasia A., and Petala, Maria
- Subjects
WASTE treatment ,FISH waste ,ANAEROBIC digestion ,RENEWABLE natural gas ,BACILLUS (Bacteria) ,LIPASES - Abstract
This study explores sustainable methods for Sardine Processing Waste (SPW) valorization. Two approaches were investigated: (a) SPW microbial pretreatment adding Saccharomyces cerevisiae or Bacillus sp. in a two-stage anaerobic digestion (AD) for enzyme and biomethane production and (b) a single-stage AD without SPW pretreatment. Both S. cerevisiae and Bacillus sp. secreted proteases (0.66 and 0.58 U mL
−1 , respectively) and lipases (3.8 and 4.3 U mL−1 , respectively) during hydrolysis, thus reducing viscosity (2.8 and 2.9 cP, respectively) compared with the untreated SPW (4.1 cP). Biomethane production was higher in the single-stage AD (1174 mL CH4 g−1 VS−1 ) when compared with the two-stage AD (821.5 and 260 mL CH4 g−1 VS−1 with S. cerevisiae and Bacillus sp., respectively). S. cerevisiae addition enhanced SPW degradation as implied by VS and sCOD values (70 and 84%, respectively), but this also resulted in a higher toxicity due to a three-fold increment in NH4 -N content, reducing methanogen activity. This research demonstrates the innovative application of S. cerevisiae, a common bread-making yeast, in the biotechnological enhancement of SPW hydrolysis. Non-genetically engineered S. cerevisiae not only co-produced proteases and lipases but also significantly improved solubilization, degradation, and viscosity reduction, thereby rendering the yeast a key player in solid fish waste valorization, beyond its traditional applications. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
38. New Bacillus paralicheniformis strain with high proteolytic and keratinolytic activity.
- Author
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Aktayeva, Saniya and Khassenov, Bekbolat
- Abstract
Bacillus paralicheniformis T7, which exhibits high proteolytic and keratinolytic activities, was isolated from soil in Kazakhstan. Its secreted proteases were thermostable and alkaline, demonstrating maximum activity at 70 °C and pH 9.0. The proteases and keratinases of this strain were sensitive to Ni
2+ , Co2+ , Mn2+ , and Cd2+ , with Cu2+ , Co2+ and Cd2+ negatively affecting keratinolytic activity, and Fe3+ ions have a strong inhibitory effect on proteolytic and keratinolytic activity. Seven proteases were identified in the enzymatic extract of B. paralicheniformis T7: four from the serine peptidase family and three from the metallopeptidase family. The proteases hydrolyzed 1 mg of casein, hemoglobin, gelatin, ovalbumin, bovine serum albumin, or keratin within 15 s to 30 min. The high keratinolytic activity of this strain was confirmed through the degradation of chicken feathers, horns, hooves, wool, and cattle hide. Chicken feathers were hydrolyzed in 4 days, and the degrees of hydrolysis for cattle hide, wool, hoof, and horn after 7 days of cultivation were 97.2, 34.5, 29.6, and 3.6%, respectively. During submerged fermentation with feather medium in a laboratory bioreactor, the strain secreted enzymes with 249.20 ± 7.88 U/mL protease activity after 24 h. Thus, B. paralicheniformis T7 can be used to produce proteolytic and keratinolytic enzymes for application in processing proteinaceous raw materials and keratinous animal waste. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
39. Enzymatic Hydrolysis as an Effective Method for Obtaining Wheat Gluten Hydrolysates Combining Beneficial Functional Properties with Health-Promoting Potential.
- Author
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Mika, Magdalena and Wikiera, Agnieszka
- Subjects
- *
PROTEIN hydrolysates , *WHEAT starch , *PEPTIDES , *BROMELIN , *PROTEOLYTIC enzymes - Abstract
The byproduct from wheat starch production contains approximately 70% gluten (WG) and is an inexpensive but demanding protein raw material for the food industry. This study attempted to determine the optimal hydrolysis conditions for such raw material to obtain peptides combining beneficial functional characteristics with health-promoting activity. The proteases Bromelain, Alcalase, Flavourzyme, and a protease from A. saitoi were used for hydrolysis. It was shown that the tested proteases differ both in terms of the effective hydrolysis conditions of gluten and the profile of the released hydrolysates. Bromelain was particularly effective in converting gluten into peptides, combining beneficial health and functional properties. It achieved maximum activity (189 U/g) against WG at pH 6 and 60 °C, and the best-balanced peptides in terms of desired properties were released at a dose of 2.5 U/g. These peptides were free from most allergenic epitopes, effectively inhibited ACE, and, at 0.34 g, were equivalent to the approved dose of BHT. Their emulsifying activity was higher than that of gluten, and the foaming formation and stabilization potential exceeded that of ovalbumin by 10% and 19%, respectively. It seems that Bromelain-released WG hydrolysates are a promising candidate for a safe fat stabilizer and egg white substitute. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
40. Comparative Genomic Analyses of Colletotrichum lindemuthianum Pathotypes with Different Virulence Levels and Lifestyles.
- Author
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Morelos-Martínez, Ma. Irene, Cano-Camacho, Horacio, Díaz-Tapia, Karla Morelia, Simpson, June, López-Romero, Everardo, and Zavala-Páramo, María Guadalupe
- Subjects
- *
FUNGAL genomes , *COMMON bean , *GENOMICS , *TRANSCRIPTION factors , *FILAMENTOUS fungi - Abstract
Colletotrichum lindemuthianum is the most frequent pathogenic fungus of the common bean Phaseolus vulgaris. This filamentous fungus employs a hemibiotrophic nutrition/infection strategy, which is characteristic of many Colletotrichum species. Due to host–pathogen coevolution, C. lindemuthianum includes pathotypes with a diversity of virulence against differential common bean varieties. In this study, we performed comparative genomic analyses on three pathotypes with different virulence levels and a non-pathogenic pathotype, isolated from different geographical areas in Mexico. Our results revealed large genomes with high transposable element contents that have undergone expansions, generating intraspecific diversity. All the pathotypes exhibited a similar number of clusters of orthologous genes (COGs) and Gene Ontology (GO) terms. TFomes contain families that are typical in fungal genomes; however, they show different contents between pathotypes, mainly in transcription factors with the fungal-specific TF and Zn2Cys6 domains. Peptidase families mainly contain abundant serine peptidases, metallopeptidases, and cysteine peptidases. In the secretomes, the number of genes differed between the pathotypes, with a high percentage of candidate effectors. Both the virulence gene and CAZyme gene content for each pathotype was abundant and diverse, and the latter was enriched in hemicellulolytic enzymes. We provide new insights into the nature of intraspecific diversity among C. lindemuthianum pathotypes and the origin of their ability to rapidly adapt to genetic changes in its host and environmental conditions. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
41. Transcriptional Profiling of Staphylococcus aureus during the Transition from Asymptomatic Nasal Colonization to Skin Colonization/Infection in Patients with Atopic Dermatitis.
- Author
-
Li, Peijuan, Schulte, Julia, Wurpts, Gerda, Hornef, Mathias W., Wolz, Christiane, Yazdi, Amir S., and Burian, Marc
- Subjects
- *
BACTERIAL colonies , *REGULATOR genes , *QUORUM sensing , *ATOPIC dermatitis , *PEPTIDES - Abstract
Staphylococcus aureus acts both as a colonizing commensal bacterium and invasive pathogen. Nasal colonization is associated with an increased risk of infection caused by the identical strain. In patients with atopic dermatitis (AD), the degree of S. aureus colonization is associated with the severity of the disease. Here, we comparatively analyzed the in vivo transcriptional profile of S. aureus colonizing the nose and non-diseased skin (non-lesional skin) as opposed to the diseased skin (lesional skin—defined here as infection) of 12 patients with AD. The transcriptional profile during the asymptomatic colonization of the nose closely resembled that of the lesional skin samples for many of the genes studied, with an elevated expression of the genes encoding adhesion-related proteins and proteases. In addition, the genes that modify and remodel the cell wall and encode proteins that facilitate immune evasion showed increased transcriptional activity. Notably, in a subgroup of patients, the global virulence regulator Agr (accessory gene regulator) and downstream target genes were inactive during nasal colonization but upregulated in the lesional and non-lesional skin samples. Taken together, our results demonstrate a colonization-like transcriptional profile on diseased skin and suggest a role for the peptide quorum sensing system Agr during the transition from asymptomatic nasal colonization to skin colonization/infection. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
42. Influence of carbonyl cyanide m-chlorophenyl hydrazone on biofilm dynamics, protease, and siderophore production by Burkholderia pseudomallei.
- Author
-
Guedes, Glaucia Morgana de Melo, Ocadaque, Crister José, Amando, Bruno Rocha, Freitas, Alyne Soares, Pereira, Vinicius Carvalho, Cordeiro, Rossana de Aguiar, Bandeira, Silviane Praciano, Souza, Pedro Filho Noronha, Rocha, Marcos Fábio Gadelha, Sidrim, José Júlio Costa, and Souza Collares Maia Castelo-Branco, Débora de
- Subjects
BURKHOLDERIA pseudomallei ,DRUG interactions ,BIOFILMS ,FACTORS of production ,DRUG resistance in microorganisms - Abstract
Efflux pump inhibitors are a potential therapeutic strategy for managing antimicrobial resistance and biofilm formation. This article evaluated the effect of carbonyl cyanide m-chlorophenyl hydrazone (CCCP) on the biofilm growth dynamics and the production of virulence factors by Burkholderia pseudomallei. The effects of CCCP on planktonic, growing, and mature biofilm, interaction with antibacterial drugs, and protease and siderophore production were assessed. CCCP MICs ranged between 128 and 256 µM. The CCCP (128 µM) had a synergic effect with all the antibiotics tested against biofilms. Additionally, CCCP reduced (p <.05) the biomass of biofilm growth and mature biofilms at 128 and 512 µM, respectively. CCCP also decreased (p <.05) protease production by growing (128 µM) and induced (p <.05) siderophore release by planktonic cells (128 µM) growing biofilms (12.8 and 128 µM) and mature biofilms (512 µM). CCCP demonstrates potential as a therapeutic adjuvant for disassembling B. pseudomallei biofilms and enhancing drug penetration. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
43. Isolation and Characterization of Bacteria Associated with Tannery Effluent and Their Protease Producing Ability.
- Author
-
Zeb, Jehan, Zeeshan, Nadia, Yasmin, Ghazalah, and Khan, Umbreen Javed
- Subjects
- *
HYDROLASES , *LEATHER industry , *FOOD industry , *SOIL sampling , *PEPTIDES , *PROTEOLYTIC enzymes , *CASEINS - Abstract
The bacteria producing proteases are important for the industries. The proteases are utilized commercially in leather, detergent, pharmaceutical and food industry. The proteases are hydrolytic enzymes which can degrade protein into peptides and amino acids. In leather industry proteases are employed to remove the redundant parts from the animal hide especially hairs to make fine quality of the products. The proteases also prove as green environmental approach. In present study a total of 40 bacterial isolates were recovered from the soil samples of the tannery and screened for proteolytic activity on casein ager plates, among them three isolates were selected with good activity. The morphological and biochemical characteristic features were used to identify the strains; the different conditions of the culture and medium were optimized to check the protease activity. The best proteolytic activity was observed at temperature of 37 °C, pH 8.5, 6% casein concentration as substrate and casein as nitrogen sources as well at 12 h of incubation. The maximum activities by SZ2, SZ1 and SZ3 observed 16.53U/mL, 8U/mL and 7.16U/mL, respectively. The goat skin was treated with proteases from these isolates, complete dehairing observed after 12 h of incubations. Present study was conducted to identify microbes from local tannery, to find out most efficient strain for protease production and to use these enzymes in leather industry. [ABSTRACT FROM AUTHOR]
- Published
- 2024
44. Aspergillus Fumigatus Spore Proteases Alter the Respiratory Mucosa Architecture and Facilitate Equine Herpesvirus 1 Infection.
- Author
-
Portaels, Joren, Van Crombrugge, Eline, Van Den Broeck, Wim, Lagrou, Katrien, Laval, Kathlyn, and Nauwynck, Hans
- Subjects
- *
SERINE proteinases , *POLLUTANTS , *RESPIRATORY mucosa , *CELL junctions , *HERPESVIRUS diseases - Abstract
Numerous Aspergillus fumigatus (Af) airborne spores are inhaled daily by humans and animals due to their ubiquitous presence. The interaction between the spores and the respiratory epithelium, as well as its impact on the epithelial barrier function, remains largely unknown. The epithelial barrier protects the respiratory epithelium against viral infections. However, it can be compromised by environmental contaminants such as pollen, thereby increasing susceptibility to respiratory viral infections, including alphaherpesvirus equine herpesvirus type 1 (EHV-1). To determine whether Af spores disrupt the epithelial integrity and enhance susceptibility to viral infections, equine respiratory mucosal ex vivo explants were pretreated with Af spore diffusate, followed by EHV-1 inoculation. Spore proteases were characterized by zymography and identified using mass spectrometry-based proteomics. Proteases of the serine protease, metalloprotease, and aspartic protease groups were identified. Morphological analysis of hematoxylin-eosin (HE)-stained sections of the explants revealed that Af spores induced the desquamation of epithelial cells and a significant increase in intercellular space at high and low concentrations, respectively. The increase in intercellular space in the epithelium caused by Af spore proteases correlated with an increase in EHV-1 infection. Together, our findings demonstrate that Af spore proteases disrupt epithelial integrity, potentially leading to increased viral infection of the respiratory epithelium. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
45. Seasonal Dynamics of Culturable Yeasts in Ornithogenically Influenced Soils in a Temperate Forest and Evaluation of Extracellular Enzyme Secretion in Tausonia pullulans at Different Temperatures.
- Author
-
Glushakova, Anna, Sharova, Anna, and Kachalkin, Aleksey
- Subjects
- *
FOREST soils , *EXTRACELLULAR enzymes , *PLANT growing media , *AUREOBASIDIUM pullulans , *TEMPERATE forests , *ECHINOCANDINS , *LIPASES - Abstract
The culturable yeast communities in temperate forest soils under the ornithogenic influence were studied in a seasonal dynamic. To investigate the intense ornithogenic influence, conventional and "live" feeders were used, which were attached to trees in the forest and constantly replenished throughout the year. It was found that the yeast abundance in the soil under strong ornithogenic influence reached the highest values in winter compared to the other seasons and amounted to 4.8 lg (cfu/g). This was almost an order of magnitude higher than the minimum value of yeast abundance in ornithogenic soils determined for summer. A total of 44 yeast species, 21 ascomycetes and 23 basidiomycetes, were detected in ornithogenic soil samples during the year. These included soil-related species (Barnettozyma californica, Cyberlindnera misumaiensis, Cutaneotrichosporon moniliiforme, Goffeauzyma gastrica, Holtermanniella festucosa, Leucosporidium creatinivorum, L. yakuticum, Naganishia adeliensis, N. albidosimilis, N. globosa, Tausonia pullulans, and Vanrija albida), eurybionts (yeast-like fungus Aureobasidium pullulans, Debaryomyces hansenii, and Rhodotorula mucilaginosa), inhabitants of plant substrates and litter (Cystofilobasidium capitatum, Cys. infirmominiatum, Cys. macerans, Filobasidium magnum, Hanseniaspora uvarum, Metschnikowia pulcherrima, and Rh. babjevae) as well as a group of pathogenic and opportunistic yeast species (Arxiozyma bovina, Candida albicans, C. parapsilosis, C. tropicalis, Clavispora lusitaniae, and Nakaseomyces glabratus). Under an ornithogenic influence, the diversity of soil yeasts was higher compared to the control, confirming the uneven distribution of yeasts in temperate forest soils and their dependence on natural hosts and vectors. Interestingly, the absolute dominant species in ornithogenic soils in winter (when the topsoil temperature was below zero) was the basidiomycetous psychrotolerant yeast T. pullulans. It is regularly observed in various soils in different geographical regions. Screening of the hydrolytic activity of 50 strains of this species at different temperatures (2, 4, 10, 15 and 20 °C) showed that the activity of esterases, lipases and proteases was significantly higher at the cultivation temperature. Ornithogenic soils could be a source for the relatively easy isolation of a large number of strains of the psychrotolerant yeast T. pullulans to test, study and optimize their potential for the production of cold-adapted enzymes for industry. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
46. Bacterial growth‐mediated systems remodelling of Nicotiana benthamiana defines unique signatures of target protein production in molecular pharming.
- Author
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Prudhomme, Nicholas, Pastora, Rebecca, Thomson, Sarah, Zheng, Edison, Sproule, Amanda, Krieger, Jonathan R., Murphy, J. Patrick, Overy, David P., Cossar, Doug, McLean, Michael D., and Geddes‐McAlister, Jennifer
- Subjects
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NICOTIANA benthamiana , *BACTERIAL proteins , *RECOMBINANT proteins , *SMALL molecules , *AGROBACTERIUM tumefaciens , *PROTEINS - Abstract
Summary: The need for therapeutics to treat a plethora of medical conditions and diseases is on the rise and the demand for alternative approaches to mammalian‐based production systems is increasing. Plant‐based strategies provide a safe and effective alternative to produce biological drugs but have yet to enter mainstream manufacturing at a competitive level. Limitations associated with batch consistency and target protein production levels are present; however, strategies to overcome these challenges are underway. In this study, we apply state‐of‐the‐art mass spectrometry‐based proteomics to define proteome remodelling of the plant following agroinfiltration with bacteria grown under shake flask or bioreactor conditions. We observed distinct signatures of bacterial protein production corresponding to the different growth conditions that directly influence the plant defence responses and target protein production on a temporal axis. Our integration of proteomic profiling with small molecule detection and quantification reveals the fluctuation of secondary metabolite production over time to provide new insight into the complexities of dual system modulation in molecular pharming. Our findings suggest that bioreactor bacterial growth may promote evasion of early plant defence responses towards Agrobacterium tumefaciens (updated nomenclature to Rhizobium radiobacter). Furthermore, we uncover and explore specific targets for genetic manipulation to suppress host defences and increase recombinant protein production in molecular pharming. [ABSTRACT FROM AUTHOR]
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- 2024
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47. Apo-Lactoferrin Inhibits the Proteolytic Activity of the 110 kDa Zn Metalloprotease Produced by Mannheimia haemolytica A2.
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Ramírez-Rico, Gerardo, Ruiz-Mazón, Lucero, Reyes-López, Magda, Rivillas Acevedo, Lina, Serrano-Luna, Jesús, and de la Garza, Mireya
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MANNHEIMIA haemolytica , *COLLAGENASES , *MOLECULAR docking , *RESPIRATORY agents , *LIPOPOLYSACCHARIDES , *LACTOFERRIN - Abstract
Mannheimia haemolytica is the main etiological bacterial agent in ruminant respiratory disease. M. haemolytica secretes leukotoxin, lipopolysaccharides, and proteases, which may be targeted to treat infections. We recently reported the purification and in vivo detection of a 110 kDa Zn metalloprotease with collagenase activity (110-Mh metalloprotease) in a sheep with mannheimiosis, and this protease may be an important virulence factor. Due to the increase in the number of multidrug-resistant strains of M. haemolytica, new alternatives to antibiotics are being explored; one option is lactoferrin (Lf), which is a multifunctional iron-binding glycoprotein from the innate immune system of mammals. Bovine apo-lactoferrin (apo-bLf) possesses many properties, and its bactericidal and bacteriostatic effects have been highlighted. The present study was conducted to investigate whether apo-bLf inhibits the secretion and proteolytic activity of the 110-Mh metalloprotease. This enzyme was purified and sublethal doses of apo-bLf were added to cultures of M. haemolytica or co-incubated with the 110-Mh metalloprotease. The collagenase activity was evaluated using zymography and azocoll assays. Our results showed that apo-bLf inhibited the secretion and activity of the 110-Mh metalloprotease. Molecular docking and overlay assays showed that apo-bLf bound near the active site of the 110-Mh metalloprotease, which affected its enzymatic activity. [ABSTRACT FROM AUTHOR]
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- 2024
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48. Breaking the Chain: Protease Inhibitors as Game Changers in Respiratory Viruses Management.
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Papaneophytou, Christos
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SARS-CoV-2 , *VIRUS diseases , *COVID-19 pandemic , *PROTEASE inhibitors , *VIRAL replication , *PROTEOLYTIC enzymes - Abstract
Respiratory viral infections (VRTIs) rank among the leading causes of global morbidity and mortality, affecting millions of individuals each year across all age groups. These infections are caused by various pathogens, including rhinoviruses (RVs), adenoviruses (AdVs), and coronaviruses (CoVs), which are particularly prevalent during colder seasons. Although many VRTIs are self-limiting, their frequent recurrence and potential for severe health complications highlight the critical need for effective therapeutic strategies. Viral proteases are crucial for the maturation and replication of viruses, making them promising therapeutic targets. This review explores the pivotal role of viral proteases in the lifecycle of respiratory viruses and the development of protease inhibitors as a strategic response to these infections. Recent advances in antiviral therapy have highlighted the effectiveness of protease inhibitors in curtailing the spread and severity of viral diseases, especially during the ongoing COVID-19 pandemic. It also assesses the current efforts aimed at identifying and developing inhibitors targeting key proteases from major respiratory viruses, including human RVs, AdVs, and (severe acute respiratory syndrome coronavirus-2) SARS-CoV-2. Despite the recent identification of SARS-CoV-2, within the last five years, the scientific community has devoted considerable time and resources to investigate existing drugs and develop new inhibitors targeting the virus's main protease. However, research efforts in identifying inhibitors of the proteases of RVs and AdVs are limited. Therefore, herein, it is proposed to utilize this knowledge to develop new inhibitors for the proteases of other viruses affecting the respiratory tract or to develop dual inhibitors. Finally, by detailing the mechanisms of action and therapeutic potentials of these inhibitors, this review aims to demonstrate their significant role in transforming the management of respiratory viral diseases and to offer insights into future research directions. [ABSTRACT FROM AUTHOR]
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- 2024
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49. New Target(s) for RNF43 Regulation: Implications for Therapeutic Strategies.
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Nag, Jeetendra Kumar, Appasamy, Priyanga, Malka, Hodaya, Sedley, Shoshana, and Bar-Shavit, Rachel
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GASTROINTESTINAL tumors , *PROTEASE-activated receptors , *BIOTHERAPY , *COLON cancer , *DRUG development , *UBIQUITIN ligases , *G protein coupled receptors - Abstract
Cancer cells depend on specific oncogenic pathways or present a genetic alteration that leads to a particular disturbance. Still, personalized and targeted biological therapy remains challenging, with current efforts generally yielding disappointing results. Carefully assessing onco-target molecular pathways can, however, potently assist with such efforts for the selection of patient populations that would best respond to a given drug treatment. RNF43, an E3 ubiquitin ligase that negatively regulates Wnt/frizzled (FZD) receptors by their ubiquitination, internalization, and degradation, controls a key pathway in cancer. Recently, additional target proteins of RNF43 were described, including p85 of the PI3K/AKT/mTOR signaling pathway and protease-activated receptor 2 (PAR2), a G-protein-coupled receptor that potently induces β-catenin stabilization, independent of Wnts. RNF43 mutations with impaired E3 ligase activity were found in several types of cancers (e.g., gastrointestinal system tumors and endometrial and ovarian cancer), pointing to a high dependency on FZD receptors and possibly PAR2 and the PI3K/AKT/mTOR signaling pathway. The development of drugs toward these targets is essential for improved treatment of cancer patients. [ABSTRACT FROM AUTHOR]
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- 2024
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50. Tryptase and tumor angiogenesis
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Domenico Ribatti
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angiogenesis ,mast cells ,tryptase ,tumor growth ,proteases ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Tryptases represent the most abundant constituent of human mast cells, involved in extracellular matrix degradation, contributing to wound healing and metastasis. Moreover, most recently, it has been demonstrated that tryptase is angiogenic both in vitro and in vivo. Tryptase-positive mast cell number increases parallelly with increased microvascular density in both solid and hematological tumors. The objective and the scope of this review article are to emphasize the important role of tryptase as one of the principal effectors of tumor angiogenesis mediated by mast cells. In this context, tryptase inhibitors may be considered a novel therapeutic approach in cancer treatment.
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- 2024
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