389 results on '"Paasonen P"'
Search Results
2. Unveiling the health impacts of air pollution transport in China
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Dian Ding, Yueqi Jiang, Shuxiao Wang, Jia Xing, Zhaoxin Dong, Jiming Hao, and Pauli Paasonen
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Air pollution transport ,Health impact ,PM2.5 ,O3 ,China ,Environmental sciences ,GE1-350 - Abstract
The transport of atmospheric pollutants plays a pivotal role in regional air pollution, highlighting critical concerns over the unequal health outcomes that arise from such transport. While previous researches predominantly focused on key areas in the battle against air pollution, the intensification of control measures necessitates a national perspective to comprehend the health impacts due to pollution transport. Our study establishes an integrated assessment framework that combine an emission-concentration response surface model with a health impact evaluation model to analyse the nationwide health impacts of PM2.5 and O3 pollution transport across China’s 31 provinces. We found that, interprovincial transport of PM2.5 and O3 contributed to 747,000 and 110,000 deaths respectively in 2017, which amounts to 38% and 48% of deaths caused by total anthropogenic emissions. North, East, and Central China together contribute 82% and 69% to the health impacts caused by regional PM2.5 and O3 transport respectively, and the transport among these three regions is also significant. The analysis of interprovincial health impact transport shows that, for PM2.5, the top contributors are Hebei, Shandong, Henan, Anhui, and Jiangsu, with the most affected being Henan, Shandong, Jiangsu, Hebei, and Guangdong. Regarding O3, Shandong, Hebei, Henan, Jiangsu, and Anhui contribute the most, while Henan, Shandong, Hebei, Jiangsu, and Anhui are the most affected. This study can shed lights on regional control strategies by prioritizing control areas based on the health impact of air pollution transport in China.
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- 2024
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3. Numerical Splitting Schemes for Solving the Ginzburg–Landau Equation with Saturated Gain and Cubic Mode Locked
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Medvedev, S. B., Shtyrina, O. V., Vaseva, I. A., Paasonen, V. I., and Fedoruk, M. P.
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- 2023
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4. A new implementation of FLEXPART with Enviro-HIRLAM meteorological input, and a case study during a heavy air pollution event
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Benjamin Foreback, Alexander Mahura, Petri Clusius, Carlton Xavier, Metin Baykara, Putian Zhou, Tuomo Nieminen, Victoria Sinclair, Veli-Matti Kerminen, Tom V. Kokkonen, Simo Hakala, Diego Aliaga, Risto Makkonen, Alexander Baklanov, Roman Nuterman, Men Xia, Chenjie Hua, Yongchun Liu, Markku Kulmala, Pauli Paasonen, and Michael Boy
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Atmospheric and chemical transport modelling ,trajectory and particle dispersion modelling ,severe air pollution episode ,FLEXPART ,Enviro-HIRLAM ,Geography. Anthropology. Recreation ,Geology ,QE1-996.5 - Abstract
We integrated Enviro-HIRLAM (Environment-High Resolution Limited Area Model) meteorological output into FLEXPART (FLEXible PARTicle dispersion model). A FLEXPART simulation requires meteorological input from a numerical weather prediction (NWP) model. The publicly available version of FLEXPART can utilize either ECMWF (European Centre for Medium-range Weather Forecasts) Integrated Forecast System (IFS) forecast or reanalysis NWP data, or NCEP (U.S. National Center for Environmental Prediction) Global Forecast System (GFS) forecast or reanalysis NWP data. The primary benefits of using Enviro-HIRLAM are that it runs at a higher resolution and accounts for aerosol effects in meteorological fields. We compared backward trajectories generated with FLEXPART using Enviro-HIRLAM (both with and without aerosol effects) to trajectories generated using NCEP GFS and ECMWF IFS meteorological inputs, for a case study of a heavy haze event which occurred in Beijing, China in November 2018. We found that results from FLEXPART were considerably different when using different meteorological inputs. When aerosol effects were included in the NWP, there was a small but noticeable difference in calculated trajectories. Moreover, when looking at potential emission sensitivity instead of simply expressing trajectories as lines, additional information, which may have been missed when looking only at trajectories as lines, can be inferred.
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- 2024
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5. Opinion: A paradigm shift in investigating the general characteristics of atmospheric new particle formation using field observations
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M. Kulmala, D. Aliaga, S. Tuovinen, R. Cai, H. Junninen, C. Yan, F. Bianchi, Y. Cheng, A. Ding, D. R. Worsnop, T. Petäjä, K. Lehtipalo, P. Paasonen, and V.-M. Kerminen
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Medicine ,Technology (General) ,T1-995 - Abstract
Atmospheric new particle formation (NPF) and associated production of secondary particulate matter dominate aerosol particle number concentrations and submicron particle mass loadings in many environments globally. Our recent investigations show that atmospheric NPF produces a significant amount of particles on days when no clear NPF event has been observed/identified. Furthermore, it has been observed in different environments all around the world that growth rates of nucleation mode particles vary little, usually much less than the measured concentrations of condensable vapors. It has also been observed that the local clustering, which in many cases acts as a starting point of regional new particle formation (NPF), can be described with the formation of intermediate ions at the smallest sizes. These observations, together with a recently developed ranking method, lead us to propose a paradigm shift in atmospheric NPF investigations. In this opinion paper, we will summarize the traditional approach of describing atmospheric NPF and describe an alternative method, covering both particle formation and initial growth. The opportunities and remaining challenges offered by the new approach are discussed.
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- 2024
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6. Iodine oxoacids and their roles in sub-3 nm particle growth in polluted urban environments
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Y. Zhang, D. Li, X.-C. He, W. Nie, C. Deng, R. Cai, Y. Liu, Y. Guo, C. Liu, Y. Li, L. Chen, C. Hua, T. Liu, Z. Wang, J. Xie, L. Wang, T. Petäjä, F. Bianchi, X. Qi, X. Chi, P. Paasonen, C. Yan, J. Jiang, A. Ding, and M. Kulmala
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Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
New particle formation contributes significantly to the number concentration of ultrafine particles (UFPs, d ≤ 100 nm) and has a great impact on human health and global climate. Iodine oxoacids (HIOx, including iodic acid, HIO3, and iodous acid, HIO2) have been observed in pristine regions and proved to dominate new particle formation (NPF) at some sites. However, the knowledge of HIOx in polluted urban areas is rather limited. Here, we conducted a long-term measurements of gaseous iodine oxoacids and sulfuric acid in Beijing from January 2019 to October 2021 and also in Nanjing from March 2019 to February 2020 and investigated the contribution of HIOx to UFP number concentration in both urban environments. HIO3 is highest in summer, up to 2.85 × 106 and 2.78 × 106 cm−3 in Beijing and Nanjing, respectively, and is lowest in winter by 96 % and 75 %, respectively. HIO3 exhibits more prominent variation than H2SO4 in both urban sites. HIO3 concentration shows a clear diurnal pattern at both sites with a daily maximum at around noontime, similar to the atmospheric temperature, solar radiation, and ozone (O3) levels. HIO2 concentration has the same diurnal and seasonal trend as HIO3 but is overall about an order of magnitude lower than HIO3 concentration. Back trajectory analysis suggests that the sources for inland iodine species could be a mix of marine and terrestrial origins, with both having peak iodine emission in warm seasons. While the contribution of HIO2 to particle growth is marginal in Beijing and Nanjing, our results demonstrate that HIO3 enhances the particle survival probability of sub-3 nm particles by about 40 % (median) and occasionally by more than 100 % in NPF events, suggesting HIOx are significant contributor to UFPs in polluted urban areas. As the growth contribution from HIO3 and H2SO4 is similar on a per-molecule basis, we propose that the sum of HIO3 and H2SO4 could be used to estimate sub-3 nm particle growth of inorganic acid origin in polluted atmospheres with a significant amount of HIOx.
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- 2024
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7. The missing base molecules in atmospheric acid–base nucleation
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Cai, Runlong, Yin, Rujing, Yan, Chao, Yang, Dongsen, Deng, Chenjuan, Dada, Lubna, Kangasluoma, Juha, Kontkanen, Jenni, Halonen, Roope, Ma, Yan, Zhang, Xiuhui, Paasonen, Pauli, Petäjä, Tuukka, Kerminen, Veli-Matti, Liu, Yongchun, Bianchi, Federico, Zheng, Jun, Wang, Lin, Hao, Jiming, Smith, James N, Donahue, Neil M, Kulmala, Markku, Worsnop, Douglas R, and Jiang, Jingkun
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Earth Sciences ,Atmospheric Sciences ,Climate Action ,new particle formation ,acid-base nucleation ,aerosol ,polluted urban environment ,Crop and Pasture Production - Abstract
Transformation of low-volatility gaseous precursors to new particles affects aerosol number concentration, cloud formation and hence the climate. The clustering of acid and base molecules is a major mechanism driving fast nucleation and initial growth of new particles in the atmosphere. However, the acid-base cluster composition, measured using state-of-the-art mass spectrometers, cannot explain the measured high formation rate of new particles. Here we present strong evidence for the existence of base molecules such as amines in the smallest atmospheric sulfuric acid clusters prior to their detection by mass spectrometers. We demonstrate that forming (H2SO4)1(amine)1 is the rate-limiting step in atmospheric H2SO4-amine nucleation and the uptake of (H2SO4)1(amine)1 is a major pathway for the initial growth of H2SO4 clusters. The proposed mechanism is very consistent with measured new particle formation in urban Beijing, in which dimethylamine is the key base for H2SO4 nucleation while other bases such as ammonia may contribute to the growth of larger clusters. Our findings further underline the fact that strong amines, even at low concentrations and when undetected in the smallest clusters, can be crucial to particle formation in the planetary boundary layer.
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- 2022
8. Nanoparticle ranking analysis: determining new particle formation (NPF) event occurrence and intensity based on the concentration spectrum of formed (sub-5 nm) particles
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D. Aliaga, S. Tuovinen, T. Zhang, J. Lampilahti, X. Li, L. Ahonen, T. Kokkonen, T. Nieminen, S. Hakala, P. Paasonen, F. Bianchi, D. Worsnop, V.-M. Kerminen, and M. Kulmala
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Medicine ,Technology (General) ,T1-995 - Abstract
Here we introduce a new method, termed “nanoparticle ranking analysis”, for characterizing new particle formation (NPF) from atmospheric observations. Using daily variations of the particle number concentration at sizes immediately above the continuous mode of molecular clusters, here in practice 2.5–5 nm (i.e. ΔN2.5−5), we can determine the occurrence probability and estimate the strength of atmospheric NPF events. After determining the value of ΔN2.5−5 for all the days during a period under consideration, the next step of the analysis is to rank the days based on this simple metric. The analysis is completed by grouping the days either into a number of percentile intervals based on their ranking or into a few modes in the distribution of log (ΔN2.5−5) values. Using 5 years (2018–2022) of data from the SMEAR II station in Hyytiälä, Finland, we found that the days with higher (lower) ranking values had, on average, both higher (lower) probability of NPF events and higher (lower) particle formation rates. The new method provides probabilistic information about the occurrence and intensity of NPF events and is expected to serve as a valuable tool to define the origin of newly formed particles at many types of environments that are affected by multiple sources of aerosol precursors.
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- 2023
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9. Impact of desert dust on new particle formation events and the cloud condensation nuclei budget in dust-influenced areas
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J. A. Casquero-Vera, D. Pérez-Ramírez, H. Lyamani, F. Rejano, A. Casans, G. Titos, F. J. Olmo, L. Dada, S. Hakala, T. Hussein, K. Lehtipalo, P. Paasonen, A. Hyvärinen, N. Pérez, X. Querol, S. Rodríguez, N. Kalivitis, Y. González, M. A. Alghamdi, V.-M. Kerminen, A. Alastuey, T. Petäjä, and L. Alados-Arboledas
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Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Detailed knowledge on the formation of new aerosol particles in the atmosphere from precursor gases, and their subsequent growth, commonly known as new particle formation (NPF) events, is one of the largest challenges in atmospheric aerosol science. High pre-existing particle loadings are expected to suppress the formation of new atmospheric aerosol particles due to high coagulation and condensation (CS) sinks. However, NPF events are regularly observed in conditions with high concentrations of pre-existing particles and even during intense desert dust intrusions that imply discrepancies between the observations and theory. In this study, we present a multi-site analysis of the occurrence of NPF events under the presence of desert dust particles in dust-influenced areas. Characterization of NPF events at five different locations highly influenced by desert dust outbreaks was done under dusty and non-dusty conditions using continuous measurements of aerosol size distribution in both fine and coarse size fractions. Contrary to common thought, our results show that the occurrence of NPF events is highly frequent during desert dust outbreaks, showing that NPF event frequencies during dusty conditions are similar to those observed during non-dusty conditions. Furthermore, our results show that NPF events also occur during intense desert dust outbreaks at all the studied sites, even at remote sites where the amounts of precursor vapours are expected to be low. Our results show that the condensation sink associated with coarse particles (CSC) represents up to the 60 % of the total CS during dusty conditions, which highlights the importance of considering coarse-fraction particles for NPF studies in desert-dust-influenced areas. However, we did not find a clear pattern of the effect of desert dust outbreaks on the strength of NPF events, with differences from site to site. The particle growth rate (GR) did not present a clear dependence on the CS during dusty and non-dusty conditions. This result, together with the fact that desert dust has different effects on the growth and formation rates at each site, suggests different formation and growth mechanisms at each site between dusty and non-dusty conditions, probably due to differences in precursor vapours' origins and concentrations as well as changes in the oxidative capacity of pre-existing particles and their effectiveness acting as CS. Further investigation based on multiplatform measurement campaigns and chamber experiments with state-of-the-art gaseous and particulate physical and chemical properties measurements is needed to better understand the role of catalyst components present in desert dust particles in NPF. Finally, our results reveal a significant impact of NPF events on the cloud condensation nuclei (CCN) budget during desert dust outbreaks at the studied sites. Therefore, since desert dust contributes to a major fraction of the global aerosol mass load, and since there is a foreseeable increase in the frequency, duration and intensity of desert dust episodes due to climate change, it is imperative to improve our understanding of the effect of desert dust outbreaks on NPF and the CCN budget for better climate change prediction.
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- 2023
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10. Geometrical Quantum Chemical Engine
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Hayakawa, Hisao, Paasonen, Ville M. M., and Yoshii, Ryosuke
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Condensed Matter - Statistical Mechanics ,Condensed Matter - Mesoscale and Nanoscale Physics - Abstract
We propose a geometrical engine undergoing an adiabatic (Thouless) pumping process for a small system connected to external isothermal reservoirs with the control of electrochemical potentials of the reservoirs and one parameter in the system Hamiltonian. Thanks to the geometrical nature of this process, the entropy production is characterized by the geometric metric tensor which is connected to the Fisher information and the Hessian of the density matrix in a nonequilibrium steady state. The existence of an inequality between the thermodynamic length and entropy production is established. We also establish that the work done on this system is characterized by a vector potential and is equivalent to the thermodynamic flux. To characterize the engine, we the introduce effective efficiency as the relation between the work and entropy production. Through the theoretical analysis of the quantum master equation for the Anderson model of a quantum dot within the wide-band approximation, we illustrate the explicit values of the work, thermodynamic length, and effective efficiency of the engine as functions of the phase difference of the externally controlled electrochemical potentials., Comment: 27 pages, 11 figures
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- 2021
11. Influence of anthropogenic emissions on the composition of highly oxygenated organic molecules in Helsinki: a street canyon and urban background station comparison
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M. Okuljar, O. Garmash, M. Olin, J. Kalliokoski, H. Timonen, J. V. Niemi, P. Paasonen, J. Kontkanen, Y. Zhang, H. Hellén, H. Kuuluvainen, M. Aurela, H. E. Manninen, M. Sipilä, T. Rönkkö, T. Petäjä, M. Kulmala, M. Dal Maso, and M. Ehn
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Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Condensable vapors, including highly oxygenated organic molecules (HOMs), govern secondary organic aerosol formation and thereby impact the quantity, composition, and properties (e.g., toxicity) of aerosol particles. These vapors are mainly formed in the atmosphere through the oxidation of volatile organic compounds (VOCs). Urban environments contain a variety of VOCs from both anthropogenic and biogenic sources, as well as other species, for instance nitrogen oxides (NOx), that can greatly influence the formation pathways of condensable vapors like HOMs. During the last decade, our understanding of HOM composition and formation has increased dramatically, with most experiments performed in forests or in heavily polluted urban areas. However, studies on the main sources for condensable vapors and secondary organic aerosols (SOAs) in biogenically influenced urban areas, such as suburbs or small cities, have been limited. Here, we studied the HOM composition, measured with two nitrate-based chemical ionization mass spectrometers and analyzed using positive matrix factorization (PMF), during late spring at two locations in Helsinki, Finland. Comparing the measured concentrations at a street canyon site and a nearby urban background station, we found a strong influence of NOx on the HOM formation at both stations, in agreement with previous studies conducted in urban areas. Even though both stations are dominated by anthropogenic VOCs, most of the identified condensable vapors originated from biogenic precursors. This implies that in Helsinki anthropogenic activities mainly influence HOM formation by the effect of NOx on the biogenic VOC oxidation. At the urban background station, we found condensable vapors formed from two biogenic VOC groups (monoterpenes and sesquiterpenes), while at the street canyon, the only identified biogenic HOM precursor was monoterpenes. At the street canyon, we also observed oxidation products of aliphatic VOCs, which were not observed at the urban background station. The only factors that clearly correlate (temporally and composition-wise) between the two stations contained monoterpene-derived dimers. This suggests that HOM composition and formation mechanisms are strongly dependent on localized emissions and the oxidative environment in these biogenically influenced urban areas, and they can also change considerably within distances of 1 km within the urban environment. This further suggests that studies should be careful when extrapolating single-point measurements in an urban setting to be representative of district or city scales.
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- 2023
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12. Explaining apparent particle shrinkage related to new particle formation events in western Saudi Arabia does not require evaporation
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S. Hakala, V. Vakkari, H. Lihavainen, A.-P. Hyvärinen, K. Neitola, J. Kontkanen, V.-M. Kerminen, M. Kulmala, T. Petäjä, T. Hussein, M. I. Khoder, M. A. Alghamdi, and P. Paasonen
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Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
The majority of new particle formation (NPF) events observed in Hada Al Sham, western Saudi Arabia, during 2013–2015 showed an unusual progression where the diameter of a newly formed particle mode clearly started to decrease after the growth phase. Many previous studies refer to this phenomenon as aerosol shrinkage. We will opt to use the term decreasing mode diameter (DMD) event, as shrinkage bears the connotation of reduction in the sizes of individual particles, which does not have to be the case. While several previous studies speculate that ambient DMD events are caused by evaporation of semivolatile species, no concrete evidence has been provided, partly due to the rarity of the DMD events. The frequent occurrence and large number of DMD events in our observations allow us to perform statistically significant comparisons between the DMD and the typical NPF events that undergo continuous growth. In our analysis, we find no clear connection between DMD events and factors that might trigger particle evaporation at the measurement site. Instead, examination of air mass source areas and the horizontal distribution of anthropogenic emissions in the study region leads us to believe that the observed DMD events could be caused by advection of smaller, less-grown particles to the measurement site after the more-grown ones. Using a Lagrangian single-particle growth model, we confirm that the observed particle size development, including the DMD events, can be reproduced by non-volatile condensation and thus without evaporation. In fact, when considering increasing contributions from a semivolatile compound, we find deteriorating agreement between the measurements and the model. Based on these results, it seems unlikely that evaporation of semivolatile compounds would play a significant role in the DMD events at our measurement site. In the proposed non-volatile explanation, the DMD events are a result of the observed particles having spent an increasing fraction of their lifetime in a lower-growth environment, mainly enabled by the lower precursor vapor concentrations further away from the measurement site combined with decreasing photochemical production of condensable vapors in the afternoon. Correct identification of the cause of the DMD events is important as the fate and the climate relevance of the newly formed particles heavily depend on it – if the particles evaporated, their net contribution to larger and climatically active particle sizes would be greatly reduced. Our findings highlight the importance of considering transport-related effects in NPF event analysis, which is an often overlooked factor in such studies.
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- 2023
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13. A consensus protocol for functional connectivity analysis in the rat brain
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Grandjean, Joanes, Desrosiers-Gregoire, Gabriel, Anckaerts, Cynthia, Angeles-Valdez, Diego, Ayad, Fadi, Barrière, David A., Blockx, Ines, Bortel, Aleksandra, Broadwater, Margaret, Cardoso, Beatriz M., Célestine, Marina, Chavez-Negrete, Jorge E., Choi, Sangcheon, Christiaen, Emma, Clavijo, Perrin, Colon-Perez, Luis, Cramer, Samuel, Daniele, Tolomeo, Dempsey, Elaine, Diao, Yujian, Doelemeyer, Arno, Dopfel, David, Dvořáková, Lenka, Falfán-Melgoza, Claudia, Fernandes, Francisca F., Fowler, Caitlin F., Fuentes-Ibañez, Antonio, Garin, Clément M., Gelderman, Eveline, Golden, Carla E. M., Guo, Chao C. G., Henckens, Marloes J. A. G., Hennessy, Lauren A., Herman, Peter, Hofwijks, Nita, Horien, Corey, Ionescu, Tudor M., Jones, Jolyon, Kaesser, Johannes, Kim, Eugene, Lambers, Henriette, Lazari, Alberto, Lee, Sung-Ho, Lillywhite, Amanda, Liu, Yikang, Liu, Yanyan Y., López -Castro, Alejandra, López-Gil, Xavier, Ma, Zilu, MacNicol, Eilidh, Madularu, Dan, Mandino, Francesca, Marciano, Sabina, McAuslan, Matthew J., McCunn, Patrick, McIntosh, Alison, Meng, Xianzong, Meyer-Baese, Lisa, Missault, Stephan, Moro, Federico, Naessens, Daphne M. P., Nava-Gomez, Laura J., Nonaka, Hiroi, Ortiz, Juan J., Paasonen, Jaakko, Peeters, Lore M., Pereira, Mickaël, Perez, Pablo D., Pompilus, Marjory, Prior, Malcolm, Rakhmatullin, Rustam, Reimann, Henning M., Reinwald, Jonathan, Del Rio, Rodrigo Triana, Rivera-Olvera, Alejandro, Ruiz-Pérez, Daniel, Russo, Gabriele, Rutten, Tobias J., Ryoke, Rie, Sack, Markus, Salvan, Piergiorgio, Sanganahalli, Basavaraju G., Schroeter, Aileen, Seewoo, Bhedita J., Selingue, Erwan, Seuwen, Aline, Shi, Bowen, Sirmpilatze, Nikoloz, Smith, Joanna A. B., Smith, Corrie, Sobczak, Filip, Stenroos, Petteri J., Straathof, Milou, Strobelt, Sandra, Sumiyoshi, Akira, Takahashi, Kengo, Torres-García, Maria E., Tudela, Raul, van den Berg, Monica, van der Marel, Kajo, van Hout, Aran T. B., Vertullo, Roberta, Vidal, Benjamin, Vrooman, Roël M., Wang, Victora X., Wank, Isabel, Watson, David J. G., Yin, Ting, Zhang, Yongzhi, Zurbruegg, Stefan, Achard, Sophie, Alcauter, Sarael, Auer, Dorothee P., Barbier, Emmanuel L., Baudewig, Jürgen, Beckmann, Christian F., Beckmann, Nicolau, Becq, Guillaume J. P. C., Blezer, Erwin L. A., Bolbos, Radu, Boretius, Susann, Bouvard, Sandrine, Budinger, Eike, Buxbaum, Joseph D., Cash, Diana, Chapman, Victoria, Chuang, Kai-Hsiang, Ciobanu, Luisa, Coolen, Bram F., Dalley, Jeffrey W., Dhenain, Marc, Dijkhuizen, Rick M., Esteban, Oscar, Faber, Cornelius, Febo, Marcelo, Feindel, Kirk W., Forloni, Gianluigi, Fouquet, Jérémie, Garza-Villarreal, Eduardo A., Gass, Natalia, Glennon, Jeffrey C., Gozzi, Alessandro, Gröhn, Olli, Harkin, Andrew, Heerschap, Arend, Helluy, Xavier, Herfert, Kristina, Heuser, Arnd, Homberg, Judith R., Houwing, Danielle J., Hyder, Fahmeed, Ielacqua, Giovanna Diletta, Jelescu, Ileana O., Johansen-Berg, Heidi, Kaneko, Gen, Kawashima, Ryuta, Keilholz, Shella D., Keliris, Georgios A., Kelly, Clare, Kerskens, Christian, Khokhar, Jibran Y., Kind, Peter C., Langlois, Jean-Baptiste, Lerch, Jason P., López-Hidalgo, Monica A., Manahan-Vaughan, Denise, Marchand, Fabien, Mars, Rogier B., Marsella, Gerardo, Micotti, Edoardo, Muñoz-Moreno, Emma, Near, Jamie, Niendorf, Thoralf, Otte, Willem M., Pais-Roldán, Patricia, Pan, Wen-Ju, Prado-Alcalá, Roberto A., Quirarte, Gina L., Rodger, Jennifer, Rosenow, Tim, Sampaio-Baptista, Cassandra, Sartorius, Alexander, Sawiak, Stephen J., Scheenen, Tom W. J., Shemesh, Noam, Shih, Yen-Yu Ian, Shmuel, Amir, Soria, Guadalupe, Stoop, Ron, Thompson, Garth J., Till, Sally M., Todd, Nick, Van Der Linden, Annemie, van der Toorn, Annette, van Tilborg, Geralda A. F., Vanhove, Christian, Veltien, Andor, Verhoye, Marleen, Wachsmuth, Lydia, Weber-Fahr, Wolfgang, Wenk, Patricia, Yu, Xin, Zerbi, Valerio, Zhang, Nanyin, Zhang, Baogui B., Zimmer, Luc, Devenyi, Gabriel A., Chakravarty, M. Mallar, and Hess, Andreas
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- 2023
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14. Comparison of two supporting matrices for patient-derived cancer cells in 3D drug sensitivity and resistance testing assay (3D-DSRT)
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Michaela Feodoroff, Piia Mikkonen, Laura Turunen, Antti Hassinen, Lauri Paasonen, Lassi Paavolainen, Swapnil Potdar, Astrid Murumägi, Olli Kallioniemi, and Vilja Pietiäinen
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Patient-derived cancer cells ,Drug sensitivity and resistance testing ,3D matrix ,Drug screening ,Functional precision medicine ,Medicine (General) ,R5-920 ,Biotechnology ,TP248.13-248.65 - Abstract
Central to the success of functional precision medicine of solid tumors is to perform drug testing of patient-derived cancer cells (PDCs) in tumor-mimicking ex vivo conditions. While high throughput (HT) drug screening methods have been well-established for cells cultured in two-dimensional (2D) format, this approach may have limited value in predicting clinical responses. Here, we describe the results of the optimization of drug sensitivity and resistance testing (DSRT) in three-dimensional (3D) growth supporting matrices in a HT mode (3D-DSRT) using the hepatocyte cell line (HepG2) as an example. Supporting matrices included widely used animal-derived Matrigel and cellulose-based hydrogel, GrowDex, which has earlier been shown to support 3D growth of cell lines and stem cells. Further, the sensitivity of ovarian cancer PDCs, from two patients included in the functional precision medicine study, was tested for 52 drugs in 5 different concentrations using 3D-DSRT.Shortly, in the optimized protocol, the PDCs are embedded with matrices and seeded to 384-well plates to allow the formation of the spheroids prior to the addition of drugs in nanoliter volumes with acoustic dispenser. The sensitivity of spheroids to drug treatments is measured with cell viability readout (here, 72 h after addition of drugs). The quality control and data analysis are performed with openly available Breeze software. We show the usability of both matrices in established 3D-DSRT, and report 2D vs 3D growth condition dependent differences in sensitivities of ovarian cancer PDCs to MEK-inhibitors and cytotoxic drugs. This study provides a proof-of-concept for robust and fast screening of drug sensitivities of PDCs in 3D-DSRT, which is important not only for drug discovery but also for personalized ex vivo drug testing in functional precision medicine studies. These findings suggest that comparing results of 2D- and 3D-DSRT is essential for understanding drug mechanisms and for selecting the most effective treatment for the patient.
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- 2023
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15. Pumping current in a non-Markovian $N$-state model
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Paasonen, Ville Matias Mikael and Hayakawa, Hisao
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Condensed Matter - Statistical Mechanics - Abstract
A periodically modulated N-state model whose dynamics is governed by a time-convoluted generalized master equation is theoretically analyzed. It is shown that this non-Markovian master equation can be converted to a Markovian master equation having a larger transition matrix, which affords easier analysis. The behavior of this model is investigated by focusing on the cycle-averaged pumping current. In the adiabatic limit, the geometrical current is calculated analytically, and compared to numerical results which are available for a wide range of modulation frequencies., Comment: 12 pages, 14 figures, revised based on referee comments
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- 2020
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16. The effect of COVID-19 restrictions on atmospheric new particle formation in Beijing
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C. Yan, Y. Shen, D. Stolzenburg, L. Dada, X. Qi, S. Hakala, A.-M. Sundström, Y. Guo, A. Lipponen, T. V. Kokkonen, J. Kontkanen, R. Cai, J. Cai, T. Chan, L. Chen, B. Chu, C. Deng, W. Du, X. Fan, X.-C. He, J. Kangasluoma, J. Kujansuu, M. Kurppa, C. Li, Y. Li, Z. Lin, Y. Liu, Y. Lu, W. Nie, J. Pulliainen, X. Qiao, Y. Wang, Y. Wen, Y. Wu, G. Yang, L. Yao, R. Yin, G. Zhang, S. Zhang, F. Zheng, Y. Zhou, A. Arola, J. Tamminen, P. Paasonen, Y. Sun, L. Wang, N. M. Donahue, F. Bianchi, K. R. Daellenbach, D. R. Worsnop, V.-M. Kerminen, T. Petäjä, A. Ding, J. Jiang, and M. Kulmala
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Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
During the COVID-19 lockdown, the dramatic reduction of anthropogenic emissions provided a unique opportunity to investigate the effects of reduced anthropogenic activity and primary emissions on atmospheric chemical processes and the consequent formation of secondary pollutants. Here, we utilize comprehensive observations to examine the response of atmospheric new particle formation (NPF) to the changes in the atmospheric chemical cocktail. We find that the main clustering process was unaffected by the drastically reduced traffic emissions, and the formation rate of 1.5 nm particles remained unaltered. However, particle survival probability was enhanced due to an increased particle growth rate (GR) during the lockdown period, explaining the enhanced NPF activity in earlier studies. For GR at 1.5–3 nm, sulfuric acid (SA) was the main contributor at high temperatures, whilst there were unaccounted contributing vapors at low temperatures. For GR at 3–7 and 7–15 nm, oxygenated organic molecules (OOMs) played a major role. Surprisingly, OOM composition and volatility were insensitive to the large change of atmospheric NOx concentration; instead the associated high particle growth rates and high OOM concentration during the lockdown period were mostly caused by the enhanced atmospheric oxidative capacity. Overall, our findings suggest a limited role of traffic emissions in NPF.
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- 2022
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17. Efficiency of GrowDex® nanofibrillar cellulosic hydrogel when generating homotypic and heterotypic 3D tumor spheroids
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Perumalsamy Balaji, Anbazhagan Murugadas, Lauri Paasonen, Sellathamby Shanmugaapriya, and Mohammad A. Akbarsha
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3d culture ,multicellular tumor spheroids ,growdex® ,hydrogel ,heterotypic spheroids ,Biology (General) ,QH301-705.5 ,Biotechnology ,TP248.13-248.65 - Abstract
In recent times, homotypic and heterotypic 3D tumor spheroid (HTS) models have been receiving increasing attention and come to be widely employed in preclinical studies. The present study is focused on the generation of homotypic (A549 and MDA-MB-231, separately) and heterotypic (A549 + NIH/3T3; MDA-MB-231 + NIH/3T3) 3D tumor spheroids by using GrowDex® nanofibrillar cellulosic (NFC) hydrogel as the scaffold. Light microscopic observations and F-actin staining confirmed the formation of spheroids. The proliferation efficiency indicated an expansion of cell population and an increase in spheroid size over time. The distribution, interaction pattern and influence of fibroblasts on the epithelial cell types were observed in terms of the size and shape of the HTS against homo-spheroids. An interesting observation was that, with an increase in the size of HTSs, many more fibroblast cells were found to occupy the core region, which, perhaps, was due to the faster growth of tumor cells over normal cells. Thus, normal and tumor cells, especially with origins from two different species, can be cultured together in 3D format, and this can potentially enhance our knowledge of tumor microenvironments and cell-cell interaction. These spheroids could be used to improve microphysiological systems for drug discovery and to better understand the tumor microenvironment.
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- 2022
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18. Measurement report: A multi-year study on the impacts of Chinese New Year celebrations on air quality in Beijing, China
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B. Foreback, L. Dada, K. R. Daellenbach, C. Yan, L. Wang, B. Chu, Y. Zhou, T. V. Kokkonen, M. Kurppa, R. E. Pileci, Y. Wang, T. Chan, J. Kangasluoma, L. Zhuohui, Y. Guo, C. Li, R. Baalbaki, J. Kujansuu, X. Fan, Z. Feng, P. Rantala, S. Gani, F. Bianchi, V.-M. Kerminen, T. Petäjä, M. Kulmala, Y. Liu, and P. Paasonen
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Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
This study investigates the influence of the Chinese New Year (CNY) celebrations on local air quality in Beijing from 2013 through 2019. CNY celebrations include burning of fireworks and firecrackers, which consequently has a significant short-term impact on local air quality. In this study, we bring together comprehensive observations at the newly constructed Aerosol and Haze Laboratory at Beijing University of Chemical Technology – West Campus (BUCT-AHL) and hourly measurements from 12 Chinese government air quality measurement stations throughout the Beijing metropolitan area. These datasets are used together to provide a detailed analysis of air quality during the CNY over multiple years, during which the city of Beijing prohibited the use of fireworks and firecrackers in an effort to reduce air pollution before CNY 2018. Datasets used in this study include particulate matter mass concentrations (PM2.5 and PM10), trace gases (NOx, SO2, O3, and CO), and meteorological variables for 2013–2019; aerosol particle size distributions; and concentrations of sulfuric acid and black carbon for 2018 and 2019. Studying the CNY over several years, which has rarely been done in previous studies, can show trends and effects of societal and policy changes over time, and the results can be applied to study problems and potential solutions of air pollution resulting from holiday celebrations. Our results show that during the 2018 CNY, air pollutant concentrations peaked during the CNY night (for example, PM2.5 reached a peak around midnight of over 250 µg cm−3, compared to values of less than 50 µg cm−3 earlier in the day). The pollutants with the most notable spikes were sulfur dioxide, particulate matter, and black carbon, which are emitted in burning of fireworks and firecrackers. Sulfuric acid concentration followed the sulfur dioxide concentration and showed elevated overnight concentration. Analysis of aerosol particle number size distribution showed direct emissions of particles with diameters around 100 nm in relation to firework burning. During the 2019 CNY, the pollution levels were somewhat lower (PM2.5 peaking at around 150 µg cm−3 on CNY compared to values around 100 µg cm−3 earlier in the day), and only minor peaks related to firework burning were observed. During both CNYs 2018 and 2019 secondary aerosol formation in terms of particle growth was observed. Meteorological conditions were comparable between these 2 years, suggesting that CNY-related emissions were less in 2019 compared to 2018. During the 7-year study period, it appears that there has been a general decrease in CNY-related emissions since 2016. For example, the peak in PM2.5 in 2016 was over 600 µg cm−3, and in the years following, the peak was less each year, with a peak around 150 µg cm−3 in 2019. This is indicative of the restrictions and public awareness of the air quality issues having a positive effect on improving air quality during the CNY. Going into the future, long-term observations will offer confirmation for these trends.
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- 2022
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19. Orientation selective stimulation with tetrahedral electrodes of the rat infralimbic cortex to indirectly target the amygdala
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Irina Gureviciene, Hanne Laakso, Omar Narvaez, Ekaterina Paasonen, Lauri Lehto, Kestutis Gurevicius, Silvia Mangia, Shalom Michaeli, Olli Gröhn, Alejandra Sierra, and Heikki Tanila
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deep brain stimulation ,medial frontal cortex ,depression ,evoked response ,MRI ,functional connectivity ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
IntroductionDeep brain stimulation (DBS) is a rapidly developing therapeutic intervention with constantly expanding neurological and psychiatric indications. A major challenge for the approach is the precise targeting and limitation of the effect on the desired neural pathways. We have introduced a new approach, orientation selective stimulation (OSS) that allows free rotation of the induced electric field on a plane when using a probe with three parallel electrodes forming an equilateral triangle at the tip. Here, we expand the technique by introducing a tetrahedral stimulation probe that enables adjustment of the primary electric field direction freely at any angle in a 3D space around the stimulating probe. OSS in 3D will enable better targeting of the electric field according to the local brain anatomy. We tested its utility in a rat model of DBS for treatment-resistant depression. The stimulation directed to the subgenual anterior cingulate cortex (sgACC) has yielded dramatic improvement in individual patients suffering from therapy resistant depression, but no consistent benefit in larger series. This failure has been ascribed to the challenging anatomy of sgACC with several crossing neural tracts and individual differences in the local anatomy.MethodsWe stimulated infralimbic cortex (IL), the rat analog of sgACC, and recorded local electrical responses in amygdala (AMG) that is monosynaptically connected to IL and plays a central role in emotional states. We further traced AMG–IL connections using a viral vector and tractography using diffusion magnetic resonance imaging (MRI). Finally, we mimicked the clinical situation by delivering sustained 130 Hz stimulation at IL at the most effective field orientation and followed changes in resting-state functional connectivity with IL using functional MRI. To help interpretation of responses in functional connectivity, we stimulated only the left IL, which we did not expect to evoke measurable changes in the rat behavior.ResultsThe AMG evoked responses depended systematically on the IL stimulation field orientation and yielded the maximum response in near vertical field orientation in accordance with tractography. Sustained 130 Hz stimulation at a field orientation yielding the strongest AMG evoked responses increased functional connectivity between IL and AMG on the stimulation side.ConclusionThese findings suggest that OSS in 3D provides a new approach to optimize the DBS for every individual patient with a single stimulation probe implantation.
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- 2023
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20. 'We Have Tiny Purses in Our Vaginas!!! #Thanksforthat': Absurdity as a Feminist Method of Intervention
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Sundén, Jenny and Paasonen, Susanna
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Purpose: According to thesaurus definitions, the absurd translates as "ridiculously unreasonable, unsound, or incongruous"; "extremely silly; not logical and sensible". As further indicated in the Latin root absurdus, "out of tune, uncouth, inappropriate, ridiculous," humor in absurd registers plays with that which is out of harmony with both reason and decency. In this article, the authors make an argument for the absurd as a feminist method for tackling heterosexism. Design/methodology/approach: By focusing on the Twitter account "Men Write Women" (est. 2019), the rationale of which is to share literary excerpts from male authors describing women's experiences, thoughts and appearances, and which regularly broadens into social theater in the user reactions, the study explores the critical value of absurdity in feminist social media tactics. Findings: The study proposes the absurd as a means of not merely turning things around, or inside out, but disrupting and eschewing the hegemonic logic on offer. While both absurd humor and feminist activism may begin from a site of reactivity and negative evaluation, it need not remain confined to it. Rather, by turning things preposterous, ludicrous and inappropriate, absurd laughter ends up somewhere different. The feminist value of absurd humor has to do with both its critical edge and with the affective lifts and spaces of ambiguity that it allows for. Originality/value: Research on digital feminist activism has largely focused on the affective dynamics of anger. As there are multiple affective responses to sexism, our article foregrounds laughter and ambivalence as a means of claiming space differently in online cultures rife with hate, sexism and misogyny.
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- 2021
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21. About Sex, Open-Mindedness, and Cinnamon Buns: Exploring Sexual Social Media
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Susanna Paasonen, Jenny Sundén, Katrin Tiidenberg, and Maria Vihlman
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Communication. Mass media ,P87-96 - Abstract
General purpose social media platforms—often incited by American legislation—increasingly exclude sex from acceptable forms of sociality in the abstract name of user safety. This article analyzes interview data (four developer interviews and 56 user interviews) from three North European sexual platforms (Darkside, Alastonsuomi, and Libertine.Center) to explore what follows from including sexual sites in definitions and analyses of social media and, by extension, in including sex in definitions of “the social” itself. We found that instead of context collapse, the users and developers of the studied sites operate with what we call context promiscuity, blending boundaries, but maintaining their structural integrity. This allows for a particular silosociality to emerge based on experiences of safety, risk, and consent. Building on this, we propose thinking of sexual expression as something not contained by, but put in motion across platforms, user cultures, content policies, and sexual norms. Rather than framing sexual social media exchanges in terms of their perceived risks and harms, we would do well to also inquire after the risks and harms involved in ousting sex from networked forms of sociality. Deplatforming of sex truncates our ways of understanding what interests, forces, and attachments drive our sociality. Yet, when analyzing social media as if the socio-sexual matters, platforms designed to support sexual displays and connections become vital nodal points in social media ecologies.
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- 2023
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22. Measurement report: New particle formation characteristics at an urban and a mountain station in northern China
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Y. Zhou, S. Hakala, C. Yan, Y. Gao, X. Yao, B. Chu, T. Chan, J. Kangasluoma, S. Gani, J. Kontkanen, P. Paasonen, Y. Liu, T. Petäjä, M. Kulmala, and L. Dada
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Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Atmospheric new particle formation (NPF) events have attracted increasing attention for their contribution to the global aerosol number budget and therefore their effects on climate, air quality and human health. NPF events are regarded as a regional phenomenon, occurring over a large area. Most observations of NPF events in Beijing and its vicinity were conducted in populated areas, whereas observations of NPF events on mountaintops with low anthropogenic emissions are still rare in China. The spatial variation of NPF event intensity has not been investigated in detail by incorporating both urban areas and mountain measurements in Beijing. Here, we provide NPF event characteristics in summer 2018 and 2019 at urban Beijing and a comparison of NPF event characteristics – NPF event frequency, formation rate and growth rate – by comparing an urban Beijing site and a background mountain site separated by ∼80 km from 14 June to 14 July 2019, as well as giving insights into the connection between both locations. During parallel measurements at urban Beijing and mountain background areas, although the median condensation sink during the first 2 h of the common NPF events was around 0.01 s−1 at both sites, there were notable differences in formation rates between the two locations (median of 5.42 cm−3 s−1 at the urban site and 1.13 cm−3 s−1 at the mountain site during the first 2 h of common NPF events). In addition, the growth rates in the 7–15 nm range for common NPF events at the urban site (median of 7.6 nm h−1) were slightly higher than those at the mountain site (median of 6.5 nm h−1). To understand whether the observed events were connected, we compared air mass trajectories as well as meteorological conditions at both stations. Favorable conditions for the occurrence of regional NPF events were largely affected by air mass transport. Overall, our results demonstrate a clear inhomogeneity of regional NPF within a distance of ∼100 km, possibly due to the discretely distributed emission sources.
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- 2021
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23. Rapid hydrogel-based phage susceptibility test for pathogenic bacteria
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Sheetal Patpatia, Eric Schaedig, Anna Dirks, Lauri Paasonen, Mikael Skurnik, and Saija Kiljunen
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bacteriophage ,phagogram ,phage therapy ,hydrogel ,rapid test ,diagnostics ,Microbiology ,QR1-502 - Abstract
Phage therapy is one alternative to cure infections caused by antibiotic resistant bacteria. Due to the narrow host range of phages, hundreds to thousands of phages are required to cover the diversity of bacterial pathogens. In personalized phage therapy, fast selection of the phages for individual patients is essential for successful therapy. The aims of this study were to set up a rapid hydrogel-based liquid phage susceptibility assay (PST) for the selection of phages for therapeutic use and to establish a “ready-to-screen” plate concept, where phages are readily stored in hydrogel as small droplets in microtiter plate wells. We first tested four commercially available hydrogels (GrowDex, Askina, Purilon, and Intrasite) for their suitability as phage matrices in PSTs with four phages, two of which infecting Escherichia coli and two Staphylococcus aureus. Of these four hydrogels, GrowDex was the best matrix for PST, as it did not inhibit bacterial growth, released phages quickly when mixed with bacterial culture, and maintained phage viability well. We then optimized the assay for both optical density and microscopy readers using GrowDex as matrix with 23 bacterial strains representing 10 different species and 23 phages possessing different morphologies and genome sizes. When the bacterial growth was monitored by microscopy reader, the PST was executed in just 3 hours, and there was no need for overnight culturing bacterial cells prior to the assay, whereas using optical density reader, bacteria had to be pre-cultured overnight, and the assay time was five hours. Finally, we evaluated the effect of three different chemical stabilizers (trehalose, hyaluronic acid, and gelatin) in a six-month stability assay with six model phages. These phages assay behaved very differently in respect to the chemical stabilizers, and there was not a single stabilizer suitable for all phages. However, when gelatin (0.01%) or hyaluronic acid (0.2 mg/ml) was used as stabilizer, all tested phages were still considered as positives in PST after a six-month storage in 1 ml volume. In “ready-to-screen” plates, the differences in phage stabilities were even more profound, varying from two to six months for the most and least stable phages, respectively.
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- 2022
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24. Whole-brain studies of spontaneous behavior in head-fixed rats enabled by zero echo time MB-SWIFT fMRI
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Jaakko Paasonen, Petteri Stenroos, Hanne Laakso, Tiina Pirttimäki, Ekaterina Paasonen, Raimo A. Salo, Heikki Tanila, Djaudat Idiyatullin, Michael Garwood, Shalom Michaeli, Silvia Mangia, and Olli Gröhn
- Subjects
Awake ,Behavior ,Functional connectivity ,Functional magnetic resonance imaging ,Rats ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Understanding the link between the brain activity and behavior is a key challenge in modern neuroscience. Behavioral neuroscience, however, lacks tools to record whole-brain activity in complex behavioral settings. Here we demonstrate that a novel Multi-Band SWeep Imaging with Fourier Transformation (MB-SWIFT) functional magnetic resonance imaging (fMRI) approach enables whole-brain studies in spontaneously behaving head-fixed rats. First, we show anatomically relevant functional parcellation. Second, we show sensory, motor, exploration, and stress-related brain activity in relevant networks during corresponding spontaneous behavior. Third, we show odor-induced activation of olfactory system with high correlation between the fMRI and behavioral responses. We conclude that the applied methodology enables novel behavioral study designs in rodents focusing on tasks, cognition, emotions, physical exercise, and social interaction. Importantly, novel zero echo time and large bandwidth approaches, such as MB-SWIFT, can be applied for human behavioral studies, allowing more freedom as body movement is dramatically less restricting factor.
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- 2022
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25. Clear, transparent, and timely communication for fair authorship decisions: a practical guide
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S. Gani, L. Kohl, R. Baalbaki, F. Bianchi, T. M. Ruuskanen, O.-P. Siira, P. Paasonen, and H. Vehkamäki
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Geography. Anthropology. Recreation ,Science - Abstract
Authorship conflicts are a common occurrence in academic publishing, and they can have serious implications for the careers and well-being of the involved researchers as well as the collective success of research organizations. In addition to not inviting relevant contributors to co-author a paper, the order of authors as well as honorary, gift, and ghost authors are all widely recognized problems related to authorship. Unfair authorship practices disproportionately affect those lower in the power hierarchies – early career researchers, women, researchers from the Global South, and other minoritized groups. Here we propose an approach to preparing author lists based on clear, transparent, and timely communication. This approach aims to minimize the potential for late-stage authorship conflicts during manuscript preparation by facilitating timely and transparent decisions on potential co-authors and their responsibilities. Furthermore, our approach can help avoid imbalances between contributions and credits in published papers by recording planned and executed responsibilities. We present authorship guidelines which also include a novel authorship form along with the documentation of the formulation process for a multidisciplinary and interdisciplinary center with more than 250 researchers. Other research groups, departments, and centers can use or build on this template to design their own authorship guidelines as a practical way to promote fair authorship practices.
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- 2021
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26. Significance of the organic aerosol driven climate feedback in the boreal area
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Taina Yli-Juuti, Tero Mielonen, Liine Heikkinen, Antti Arola, Mikael Ehn, Sini Isokääntä, Helmi-Marja Keskinen, Markku Kulmala, Anton Laakso, Antti Lipponen, Krista Luoma, Santtu Mikkonen, Tuomo Nieminen, Pauli Paasonen, Tuukka Petäjä, Sami Romakkaniemi, Juha Tonttila, Harri Kokkola, and Annele Virtanen
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Science - Abstract
Vegetation emits organic vapors which can form aerosols in the atmosphere and influence cloud properties. Here, the authors show observational evidence that warmer temperatures lead to increased emissions of these aerosols in boreal forests which cause surface cooling, demonstrating a negative climate feedback mechanism.
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- 2021
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27. Infantile status epilepticus disrupts myelin development
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Petra Bencurova, Hanne Laakso, Raimo A. Salo, Ekaterina Paasonen, Eppu Manninen, Jaakko Paasonen, Shalom Michaeli, Silvia Mangia, Martin Bares, Milan Brazdil, Hana Kubova, and Olli Gröhn
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Animal model ,Status Epilepticus ,Temporal Lobe Epilepsy ,Myelin development ,White matter integrity ,MRI ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Temporal lobe epilepsy (TLE) is the most prevalent type of epilepsy in adults; it often starts in infancy or early childhood. Although TLE is primarily considered to be a grey matter pathology, a growing body of evidence links this disease with white matter abnormalities. In this study, we explore the impact of TLE onset and progression in the immature brain on white matter integrity and development utilising the rat model of Li-pilocarpine-induced TLE at the 12th postnatal day (P). Diffusion tensor imaging (DTI) and Black-Gold II histology uncovered disruptions in major white matter tracks (corpus callosum, internal and external capsules, and deep cerebral white matter) spreading through the whole brain at P28. These abnormalities were mostly not present any longer at three months after TLE induction, with only limited abnormalities detectable in the external capsule and deep cerebral white matter. Relaxation Along a Fictitious Field in the rotating frame of rank 4 indicated that white matter changes observed at both timepoints, P28 and P72, are consistent with decreased myelin content. The animals affected by TLE-induced white matter abnormalities exhibited increased functional connectivity between the thalamus and medial prefrontal and somatosensory cortex in adulthood. Furthermore, histological analyses of additional animal groups at P15 and P18 showed only mild changes in white matter integrity, suggesting a gradual age-dependent impact of TLE progression. Taken together, TLE progression in the immature brain distorts white matter development with a peak around postnatal day 28, followed by substantial recovery in adulthood. This developmental delay might give rise to cognitive and behavioural comorbidities typical for early-onset TLE.
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- 2022
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28. Measurement report: The influence of traffic and new particle formation on the size distribution of 1–800 nm particles in Helsinki – a street canyon and an urban background station comparison
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M. Okuljar, H. Kuuluvainen, J. Kontkanen, O. Garmash, M. Olin, J. V. Niemi, H. Timonen, J. Kangasluoma, Y. J. Tham, R. Baalbaki, M. Sipilä, L. Salo, H. Lintusaari, H. Portin, K. Teinilä, M. Aurela, M. Dal Maso, T. Rönkkö, T. Petäjä, and P. Paasonen
- Subjects
Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Most of the anthropogenic air pollution sources are located in urban environments. The contribution of these sources to the population of atmospheric particles in the urban environment is poorly known. In this study, we investigated the aerosol particle number concentrations in a diameter range from 1 to 800 nm at a street canyon site and at a background station within 1 km from each other in Helsinki, Finland. We use these number size distribution data together with complementary trace gas data and develop a method to estimate the relative contributions of traffic and atmospheric new particle formation (NPF) to the concentrations of sub-3 nm particles. During the daytime, the particle concentrations were higher at the street canyon site than at the background station in all analyzed modes: sub-3 nm particles, nucleation mode (3–25 nm), Aitken mode (25–100 nm), and accumulation mode (100–800 nm). The population of sub-3 nm and nucleation mode particles was linked to local sources such as traffic, while the accumulation mode particles were more related to non-local sources. Aitken mode particles were dominated by local sources at the street canyon site, while at the background station they were mainly influenced by non-local sources. The results of this study support earlier research showing direct emissions of the sub-3 nm particles from traffic. However, by using our new method, we show that, during NPF events, traffic contribution to the total sub-3 nm particle concentration can be small and during daytime (6:00–20:00) in spring it does not dominate the sub-3 nm particle population at either of the researched sites. In the future, the contribution of traffic to particle number concentrations in different urban environments can be estimated with a similar approach, but determining the relationships between the gas and particle concentrations from observations needs to be conducted with longer data sets from different urban environments.
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- 2021
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29. Spatial signatures of anesthesia-induced burst-suppression differ between primates and rodents
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Nikoloz Sirmpilatze, Judith Mylius, Michael Ortiz-Rios, Jürgen Baudewig, Jaakko Paasonen, Daniel Golkowski, Andreas Ranft, Rüdiger Ilg, Olli Gröhn, and Susann Boretius
- Subjects
anesthesia ,fMRI ,common marmoset ,isoflurane ,sevoflurane ,burst-suppression ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
During deep anesthesia, the electroencephalographic (EEG) signal of the brain alternates between bursts of activity and periods of relative silence (suppressions). The origin of burst-suppression and its distribution across the brain remain matters of debate. In this work, we used functional magnetic resonance imaging (fMRI) to map the brain areas involved in anesthesia-induced burst-suppression across four mammalian species: humans, long-tailed macaques, common marmosets, and rats. At first, we determined the fMRI signatures of burst-suppression in human EEG-fMRI data. Applying this method to animal fMRI datasets, we found distinct burst-suppression signatures in all species. The burst-suppression maps revealed a marked inter-species difference: in rats, the entire neocortex engaged in burst-suppression, while in primates most sensory areas were excluded—predominantly the primary visual cortex. We anticipate that the identified species-specific fMRI signatures and whole-brain maps will guide future targeted studies investigating the cellular and molecular mechanisms of burst-suppression in unconscious states.
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- 2022
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30. Sulfuric acid–amine nucleation in urban Beijing
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R. Cai, C. Yan, D. Yang, R. Yin, Y. Lu, C. Deng, Y. Fu, J. Ruan, X. Li, J. Kontkanen, Q. Zhang, J. Kangasluoma, Y. Ma, J. Hao, D. R. Worsnop, F. Bianchi, P. Paasonen, V.-M. Kerminen, Y. Liu, L. Wang, J. Zheng, M. Kulmala, and J. Jiang
- Subjects
Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
New particle formation (NPF) is one of the major sources of atmospheric ultrafine particles. Due to the high aerosol and trace gas concentrations, the mechanism and governing factors for NPF in the polluted atmospheric boundary layer may be quite different from those in clean environments, which is however less understood. Herein, based on long-term atmospheric measurements from January 2018 to March 2019 in Beijing, the nucleation mechanism and the influences of H2SO4 concentration, amine concentrations, and aerosol concentration on NPF are quantified. The collision of H2SO4–amine clusters is found to be the dominating mechanism to initialize NPF in urban Beijing. The coagulation scavenging due to the high aerosol concentration is a governing factor as it limits the concentration of H2SO4–amine clusters and new particle formation rates. The formation of H2SO4–amine clusters in Beijing is sometimes limited by low amine concentrations. Summarizing the synergistic effects of H2SO4 concentration, amine concentrations, and aerosol concentration, we elucidate the governing factors for H2SO4–amine nucleation for various conditions.
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- 2021
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31. Long-term measurement of sub-3 nm particles and their precursor gases in the boreal forest
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J. Sulo, N. Sarnela, J. Kontkanen, L. Ahonen, P. Paasonen, T. Laurila, T. Jokinen, J. Kangasluoma, H. Junninen, M. Sipilä, T. Petäjä, M. Kulmala, and K. Lehtipalo
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Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
The knowledge of the dynamics of sub-3 nm particles in the atmosphere is crucial for our understanding of the first steps of atmospheric new particle formation. Therefore, accurate and stable long-term measurements of the smallest atmospheric particles are needed. In this study, we analyzed over 5 years of particle concentrations in size classes 1.1–1.7 and 1.7–2.5 nm obtained with the particle size magnifier (PSM) and 3 years of precursor vapor concentrations measured with the chemical ionization atmospheric pressure interface time-of-flight mass spectrometer (CI-APi-ToF) at the SMEAR II station in Hyytiälä, Finland. The results show that there are significant seasonal differences in median concentrations of sub-3 nm particles, but the two size classes behave partly differently. The 1.1–1.7 nm particle concentrations are highest in summer, while the 1.7–2.5 nm particle concentrations are highest in springtime. The 1.7–2.5 nm particles exhibit a daytime maximum in all seasons, while the 1.1–1.7 nm particles have an additional evening maximum during spring and summer. Aerosol precursor vapors have notable diurnal and seasonal differences as well. Sulfuric acid and highly oxygenated organic molecule (HOM) monomer concentrations have clear daytime maxima, while HOM dimers have their maxima during the night. HOM concentrations for both monomers and dimers are the highest during summer and the lowest during winter following the biogenic activity in the surrounding forest. Sulfuric acid concentrations are the highest during spring and summer, with autumn and winter concentrations being 2 to 3 times lower. A correlation analysis between the sub-3 nm concentrations and aerosol precursor vapor concentrations indicates that both HOMs (particularly their dimers) and sulfuric acid play a significant role in new particle formation in the boreal forest. Our analysis also suggests that there might be seasonal differences in new particle formation pathways that need to be investigated further.
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- 2021
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32. A 3D study on the amplification of regional haze and particle growth by local emissions
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Wei Du, Lubna Dada, Jian Zhao, Xueshun Chen, Kaspar R. Daellenbach, Conghui Xie, Weigang Wang, Yao He, Jing Cai, Lei Yao, Yingjie Zhang, Qingqing Wang, Weiqi Xu, Yuying Wang, Guiqian Tang, Xueling Cheng, Tom V. Kokkonen, Wei Zhou, Chao Yan, Biwu Chu, Qiaozhi Zha, Simo Hakala, Mona Kurppa, Leena Järvi, Yongchun Liu, Zhanqing Li, Maofa Ge, Pingqing Fu, Wei Nie, Federico Bianchi, Tuukka Petäjä, Pauli Paasonen, Zifa Wang, Douglas R. Worsnop, Veli-Matti Kerminen, Markku Kulmala, and Yele Sun
- Subjects
Environmental sciences ,GE1-350 ,Meteorology. Climatology ,QC851-999 - Abstract
Abstract The role of new particle formation (NPF) events and their contribution to haze formation through subsequent growth in polluted megacities is still controversial. To improve the understanding of the sources, meteorological conditions, and chemistry behind air pollution, we performed simultaneous measurements of aerosol composition and particle number size distributions at ground level and at 260 m in central Beijing, China, during a total of 4 months in 2015–2017. Our measurements show a pronounced decoupling of gas-to-particle conversion between the two heights, leading to different haze processes in terms of particle size distributions and chemical compositions. The development of haze was initiated by the growth of freshly formed particles at both heights, whereas the more severe haze at ground level was connected directly to local primary particles and gaseous precursors leading to higher particle growth rates. The particle growth creates a feedback loop, in which a further development of haze increases the atmospheric stability, which in turn strengthens the persisting apparent decoupling between the two heights and increases the severity of haze at ground level. Moreover, we complemented our field observations with model analyses, which suggest that the growth of NPF-originated particles accounted up to ∼60% of the accumulation mode particles in the Beijing–Tianjin–Hebei area during haze conditions. The results suggest that a reduction in anthropogenic gaseous precursors, suppressing particle growth, is a critical step for alleviating haze although the number concentration of freshly formed particles (3–40 nm) via NPF does not reduce after emission controls.
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- 2021
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33. Size-segregated particle number and mass concentrations from different emission sources in urban Beijing
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J. Cai, B. Chu, L. Yao, C. Yan, L. M. Heikkinen, F. Zheng, C. Li, X. Fan, S. Zhang, D. Yang, Y. Wang, T. V. Kokkonen, T. Chan, Y. Zhou, L. Dada, Y. Liu, H. He, P. Paasonen, J. T. Kujansuu, T. Petäjä, C. Mohr, J. Kangasluoma, F. Bianchi, Y. Sun, P. L. Croteau, D. R. Worsnop, V.-M. Kerminen, W. Du, M. Kulmala, and K. R. Daellenbach
- Subjects
Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Although secondary particulate matter is reported to be the main contributor of PM2.5 during haze in Chinese megacities, primary particle emissions also affect particle concentrations. In order to improve estimates of the contribution of primary sources to the particle number and mass concentrations, we performed source apportionment analyses using both chemical fingerprints and particle size distributions measured at the same site in urban Beijing from April to July 2018. Both methods resolved factors related to primary emissions, including vehicular emissions and cooking emissions, which together make up 76 % and 24 % of total particle number and organic aerosol (OA) mass, respectively. Similar source types, including particles related to vehicular emissions (1.6±1.1 µg m−3; 2.4±1.8×103 cm−3 and 5.5±2.8×103 cm−3 for two traffic-related components), cooking emissions (2.6±1.9 µg m−3 and 5.5±3.3×103 cm−3) and secondary aerosols (51±41 µg m−3 and 4.2±3.0×103 cm−3), were resolved by both methods. Converted mass concentrations from particle size distributions components were comparable with those from chemical fingerprints. Size distribution source apportionment separated vehicular emissions into a component with a mode diameter of 20 nm (“traffic-ultrafine”) and a component with a mode diameter of 100 nm (“traffic-fine”). Consistent with similar day- and nighttime diesel vehicle PM2.5 emissions estimated for the Beijing area, traffic-fine particles, hydrocarbon-like OA (HOA, traffic-related factor resulting from source apportionment using chemical fingerprints) and black carbon (BC) showed similar diurnal patterns, with higher concentrations during the night and morning than during the afternoon when the boundary layer is higher. Traffic-ultrafine particles showed the highest concentrations during the rush-hour period, suggesting a prominent role of local gasoline vehicle emissions. In the absence of new particle formation, our results show that vehicular-related emissions (14 % and 30 % for ultrafine and fine particles, respectively) and cooking-activity-related emissions (32 %) dominate the particle number concentration, while secondary particulate matter (over 80 %) governs PM2.5 mass during the non-heating season in Beijing.
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- 2020
- Full Text
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34. New particle formation at urban and high-altitude remote sites in the south-eastern Iberian Peninsula
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J. A. Casquero-Vera, H. Lyamani, L. Dada, S. Hakala, P. Paasonen, R. Román, R. Fraile, T. Petäjä, F. J. Olmo-Reyes, and L. Alados-Arboledas
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Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
A substantial fraction of the atmospheric aerosols originates from secondary new particle formation (NPF), where atmospheric vapours are transformed into particles that subsequently grow to larger sizes, affecting human health and the climate. In this study, we investigate aerosol size distributions at two stations located close to each other (∼ 20 km) but at different altitudes: urban (UGR; 680 m a.s.l., metres above sea level) and high-altitude remote (SNS; 2500 m a.s.l.) sites, both in the area of Granada, Spain, and part of AGORA observatory (Andalusian Global ObseRvatory of the Atmosphere). The analysis shows a significant contribution of nucleation mode aerosol particles to the total aerosol number concentration at both sites, with a contribution of 47 % and 48 % at SNS and UGR, respectively. Due to the important contribution of NPF events to the total aerosol number concentrations and their high occurrence frequency (> 70 %) during the study period, a detailed analysis of NPF events is done in order to get insight into the possible mechanisms and processes involved in NPF events at these contrastive sites. At SNS, NPF is found to be associated with the transport of gaseous precursors from lower altitudes by orographic buoyant upward flows. NPF events at the SNS site are always observed from the smallest measured sizes of the aerosol size distribution (4 nm), implying that NPF takes place in or in the vicinity of the high-altitude SNS station rather than being transported from lower altitudes. Although NPF events at the mountain site seem to be connected with those occurring at the urban site, growth rates (GRs) at SNS are higher than those at the UGR site (GR7−25 of 6.9 and 4.5 nm h−1 and GR4−7 of 4.1 and 3.6 nm h−1 at SNS and UGR, respectively). This fact could have special importance for the production of cloud condensation nuclei (CCN) and therefore for cloud formations which may affect regional/global climate, since larger GRs at mountain sites could translate to a larger survival probability of NPF particles reaching CCN sizes, due to the shorter time period needed for the growth. The analysis of sulfuric acid (H2SO4) shows that the contribution of H2SO4 is able to explain a minimal fraction contribution to the observed GRs at both sites (< 1 % and < 10 % for the 7–25 and 4–7 nm size ranges, respectively), indicating that other condensing vapours are responsible for the majority of particle growth, as well as the differing growth rates between the two sites. Results also show that the condensation sink (CS) does not play a relevant role in NPF processes at both sites and points to the availability of volatile organic compounds (VOCs) as one of the main factors controlling the NPF events at both sites. Finally, a closer analysis of the NPF events that were observed at the SNS site during a Saharan dust episode that occurred during the field campaign was carried out, evidencing the role of TiO2 and F2O3 together with VOCs in promoting new particle formation during this dust intrusion event. Although further investigation is needed to improve our understanding in this topic, this result suggests that climate effects of mineral dust and NPF are not disconnected from each other as it was commonly thought. Therefore, since mineral dust contributes to a major fraction of the global aerosol mass load, dust–NPF interaction should be taken into account in global aerosol-climate modelling for better climate change prediction.
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- 2020
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35. Isoflurane affects brain functional connectivity in rats 1 month after exposure
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Petteri Stenroos, Tiina Pirttimäki, Jaakko Paasonen, Ekaterina Paasonen, Raimo A Salo, Hennariikka Koivisto, Teemu Natunen, Petra Mäkinen, Teemu Kuulasmaa, Mikko Hiltunen, Heikki Tanila, and Olli Gröhn
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Brain plasticity ,Local field potential ,Functional connectivity ,Functional magnetic resonance imaging ,Isoflurane ,Rats ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Isoflurane, the most commonly used preclinical anesthetic, induces brain plasticity and long-term cellular and molecular changes leading to behavioral and/or cognitive consequences. These changes are most likely associated with network-level changes in brain function. To elucidate the mechanisms underlying long-term effects of isoflurane, we investigated the influence of a single isoflurane exposure on functional connectivity, brain electrical activity, and gene expression.Male Wistar rats (n = 22) were exposed to 1.8% isoflurane for 3 h. Control rats (n = 22) spent 3 h in the same room without exposure to anesthesia. After 1 month, functional connectivity was evaluated with resting-state functional magnetic resonance imaging (fMRI; n = 6 + 6) and local field potential measurements (n = 6 + 6) in anesthetized animals. A whole genome expression analysis (n = 10+10) was also conducted with mRNA-sequencing from cortical and hippocampal tissue samples.Isoflurane treatment strengthened thalamo-cortical and hippocampal-cortical functional connectivity. Cortical low-frequency fMRI power was also significantly increased in response to the isoflurane treatment. The local field potential results indicating strengthened hippocampal-cortical alpha and beta coherence were in good agreement with the fMRI findings. Furthermore, altered expression was found in 20 cortical genes, several of which are involved in neuronal signal transmission, but no gene expression changes were noted in the hippocampus.Isoflurane induced prolonged changes in thalamo-cortical and hippocampal-cortical function and expression of genes contributing to signal transmission in the cortex. Further studies are required to investigate whether these changes are associated with the postoperative behavioral and cognitive symptoms commonly observed in patients and animals.
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- 2021
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36. Yul Brynner : Exoticism, Cosmopolitanism and Screen Masculinity
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Paasonen, Susanna and Paasonen, Susanna
- Published
- 2023
37. Adaptive Grids and High-Order Schemes for Solving Singular Perturbation Problems
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Liseikin, V. D. and Paasonen, V. I.
- Published
- 2021
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38. New p32/gC1qR Ligands for Targeted Tumor Drug Delivery
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Paasonen, Lauri, Sharma, Shweta, Braun, Gary B, Kotamraju, Venkata Ramana, Chung, Thomas DY, She, Zhi‐Gang, Sugahara, Kazuki N, Yliperttula, Marjo, Wu, Bainan, Pellecchia, Maurizio, Ruoslahti, Erkki, and Teesalu, Tambet
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Medicinal and Biomolecular Chemistry ,Chemical Sciences ,Biotechnology ,Bioengineering ,Nanotechnology ,Cancer ,5.1 Pharmaceuticals ,Development of treatments and therapeutic interventions ,Aminopyridines ,Animals ,Antineoplastic Agents ,Breast Neoplasms ,Carrier Proteins ,Cell Line ,Tumor ,Drug Delivery Systems ,Ethylenediamines ,Female ,Humans ,Ligands ,Mice ,Mitochondrial Proteins ,Nanoparticles ,Peptides ,Cyclic ,cancer ,drug delivery ,high-throughput screening ,nanoparticles ,peptides ,Biochemistry and Cell Biology ,Organic Chemistry ,Biochemistry and cell biology ,Medicinal and biomolecular chemistry - Abstract
Cell surface p32, the target of LyP-1 homing peptide, is upregulated in tumors and atherosclerotic plaques and has been widely used as a receptor for systemic delivery of payloads. Here, we identified an improved LyP-1-mimicking peptide (TT1, CKRGARSTC). We used this peptide in a fluorescence polarization-based high-throughput screening of a 50,000-compound chemical library and identified a panel of compounds that bind p32 with low micromolar affinity. Among the hits identified in the screen, two compounds were shown to specifically bind to p32 in multiple assays. One of these compounds was chosen for an in vivo study. Nanoparticles surface-functionalized with this compound specifically adhered to surfaces coated with recombinant p32 and, when injected intravenously, homed to p32-expressing breast tumors in mice. This compound provides a lead for the development of p32-targeted affinity ligands that circumvent some of the limitations of peptide-based probes in guided drug delivery.
- Published
- 2016
39. Comment on 'Enhancement in the production of nucleating clusters due to dimethylamine and large uncertainties in the thermochemistry of amine-enhanced nucleation' by Nadykto et al., Chem. Phys. Lett., 609, 42-49 (2014)
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Kupiainen-Määttä, Oona, Henschel, Henning, Kurtén, Theo, Loukonen, Ville, Olenius, Tinja, Paasonen, Pauli, and Vehkamäki, Hanna
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Physics - Chemical Physics - Abstract
We comment on a study by Nadykto et al. recently published in this journal. Earlier work from our group has been misrepresented in this study, and we feel that the claims made need to be amended. Also the analysis of Nadykto et al. concerning the implications of their own density functional calculations is incomplete. We present cluster formation simulations allowing more conclusions to be drawn from their data, and also compare them to recent experimental results not cited in their work., Comment: 8 pages, 3 figures, submitted to Chemical Physics Letters
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- 2014
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40. Size-resolved particle number emissions in Beijing determined from measured particle size distributions
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J. Kontkanen, C. Deng, Y. Fu, L. Dada, Y. Zhou, J. Cai, K. R. Daellenbach, S. Hakala, T. V. Kokkonen, Z. Lin, Y. Liu, Y. Wang, C. Yan, T. Petäjä, J. Jiang, M. Kulmala, and P. Paasonen
- Subjects
Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
The climate and air quality effects of aerosol particles depend on the number and size of the particles. In urban environments, a large fraction of aerosol particles originates from anthropogenic emissions. To evaluate the effects of different pollution sources on air quality, knowledge of size distributions of particle number emissions is needed. Here we introduce a novel method for determining size-resolved particle number emissions, based on measured particle size distributions. We apply our method to data measured in Beijing, China, to determine the number size distribution of emitted particles in a diameter range from 2 to 1000 nm. The observed particle number emissions are dominated by emissions of particles smaller than 30 nm. Our results suggest that traffic is the major source of particle number emissions with the highest emissions observed for particles around 10 nm during rush hours. At sizes below 6 nm, clustering of atmospheric vapors contributes to calculated emissions. The comparison between our calculated emissions and those estimated with an integrated assessment model GAINS (Greenhouse Gas and Air Pollution Interactions and Synergies) shows that our method yields clearly higher particle emissions at sizes below 60 nm, but at sizes above that the two methods agree well. Overall, our method is proven to be a useful tool for gaining new knowledge of the size distributions of particle number emissions in urban environments and for validating emission inventories and models. In the future, the method will be developed by modeling the transport of particles from different sources to obtain more accurate estimates of particle number emissions.
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- 2020
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41. Sources and sinks driving sulfuric acid concentrations in contrasting environments: implications on proxy calculations
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L. Dada, I. Ylivinkka, R. Baalbaki, C. Li, Y. Guo, C. Yan, L. Yao, N. Sarnela, T. Jokinen, K. R. Daellenbach, R. Yin, C. Deng, B. Chu, T. Nieminen, Y. Wang, Z. Lin, R. C. Thakur, J. Kontkanen, D. Stolzenburg, M. Sipilä, T. Hussein, P. Paasonen, F. Bianchi, I. Salma, T. Weidinger, M. Pikridas, J. Sciare, J. Jiang, Y. Liu, T. Petäjä, V.-M. Kerminen, and M. Kulmala
- Subjects
Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Sulfuric acid has been shown to be a key driver for new particle formation and subsequent growth in various environments, mainly due to its low volatility. However, direct measurements of gas-phase sulfuric acid are oftentimes not available, and the current sulfuric acid proxies cannot predict, for example, its nighttime concentrations or result in significant discrepancies with measured values. Here, we define the sources and sinks of sulfuric acid in different environments and derive a new physical proxy for sulfuric acid to be utilized in locations and during periods when it is not measured. We used H2SO4 measurements from four different locations: Hyytiälä, Finland; Agia Marina, Cyprus; Budapest, Hungary; and Beijing, China, representing semi-pristine boreal forest, rural environment in the Mediterranean area, urban environment and heavily polluted megacity, respectively. The new proxy takes into account the formation of sulfuric acid from SO2 via OH oxidation and other oxidation pathways, specifically via stabilized Criegee intermediates. The sulfuric acid sinks included in the proxy are its condensation sink (CS) and atmospheric clustering starting from H2SO4 dimer formation. Indeed, we found that the observed sulfuric acid concentration can be explained by the proposed sources and sinks with similar coefficients in the four contrasting environments where we have tested it. Thus, the new proxy is a more flexible and an important improvement over previous proxies. Following the recommendations in this paper, a proxy for a specific location can be derived.
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- 2020
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- View/download PDF
42. Overview: Integrative and Comprehensive Understanding on Polar Environments (iCUPE) – concept and initial results
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T. Petäjä, E.-M. Duplissy, K. Tabakova, J. Schmale, B. Altstädter, G. Ancellet, M. Arshinov, Y. Balin, U. Baltensperger, J. Bange, A. Beamish, B. Belan, A. Berchet, R. Bossi, W. R. L. Cairns, R. Ebinghaus, I. El Haddad, B. Ferreira-Araujo, A. Franck, L. Huang, A. Hyvärinen, A. Humbert, A.-C. Kalogridis, P. Konstantinov, A. Lampert, M. MacLeod, O. Magand, A. Mahura, L. Marelle, V. Masloboev, D. Moisseev, V. Moschos, N. Neckel, T. Onishi, S. Osterwalder, A. Ovaska, P. Paasonen, M. Panchenko, F. Pankratov, J. B. Pernov, A. Platis, O. Popovicheva, J.-C. Raut, A. Riandet, T. Sachs, R. Salvatori, R. Salzano, L. Schröder, M. Schön, V. Shevchenko, H. Skov, J. E. Sonke, A. Spolaor, V. K. Stathopoulos, M. Strahlendorff, J. L. Thomas, V. Vitale, S. Vratolis, C. Barbante, S. Chabrillat, A. Dommergue, K. Eleftheriadis, J. Heilimo, K. S. Law, A. Massling, S. M. Noe, J.-D. Paris, A. S. H. Prévôt, I. Riipinen, B. Wehner, Z. Xie, and H. K. Lappalainen
- Subjects
Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
The role of polar regions is increasing in terms of megatrends such as globalization, new transport routes, demography, and the use of natural resources with consequent effects on regional and transported pollutant concentrations. We set up the ERA-PLANET Strand 4 project “iCUPE – integrative and Comprehensive Understanding on Polar Environments” to provide novel insights and observational data on global grand challenges with an Arctic focus. We utilize an integrated approach combining in situ observations, satellite remote sensing Earth observations (EOs), and multi-scale modeling to synthesize data from comprehensive long-term measurements, intensive campaigns, and satellites to deliver data products, metrics, and indicators to stakeholders concerning the environmental status, availability, and extraction of natural resources in the polar areas. The iCUPE work consists of thematic state-of-the-art research and the provision of novel data in atmospheric pollution, local sources and transboundary transport, the characterization of arctic surfaces and their changes, an assessment of the concentrations and impacts of heavy metals and persistent organic pollutants and their cycling, the quantification of emissions from natural resource extraction, and the validation and optimization of satellite Earth observation (EO) data streams. In this paper we introduce the iCUPE project and summarize initial results arising out of the integration of comprehensive in situ observations, satellite remote sensing, and multi-scale modeling in the Arctic context.
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- 2020
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43. Ex vivo modelling of drug efficacy in a rare metastatic urachal carcinoma
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Rami Mäkelä, Antti Arjonen, Ville Härmä, Nina Rintanen, Lauri Paasonen, Tobias Paprotka, Kerstin Rönsch, Teijo Kuopio, Juha Kononen, and Juha K. Rantala
- Subjects
Ex vivo drug screening ,Urachal carcinoma ,Rare cancer ,Precision medicine ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Ex vivo drug screening refers to the out-of-body assessment of drug efficacy in patient derived vital tumor cells. The purpose of these methods is to enable functional testing of patient specific efficacy of anti-cancer therapeutics and personalized treatment strategies. Such approaches could prove powerful especially in context of rare cancers for which demonstration of novel therapies is difficult due to the low numbers of patients. Here, we report comparison of different ex vivo drug screening methods in a metastatic urachal adenocarcinoma, a rare and aggressive non-urothelial bladder malignancy that arises from the remnant embryologic urachus in adults. Methods To compare the feasibility and results obtained with alternative ex vivo drug screening techniques, we used three different approaches; enzymatic cell viability assay of 2D cell cultures and image-based cytometry of 2D and 3D cell cultures in parallel. Vital tumor cells isolated from a biopsy obtained in context of a surgical debulking procedure were used for screening of 1160 drugs with the aim to evaluate patterns of efficacy in the urachal cancer cells. Results Dose response data from the enzymatic cell viability assay and the image-based assay of 2D cell cultures showed the best consistency. With 3D cell culture conditions, the proliferation rate of the tumor cells was slower and potency of several drugs was reduced even following growth rate normalization of the responses. MEK, mTOR, and MET inhibitors were identified as the most cytotoxic targeted drugs. Secondary validation analyses confirmed the efficacy of these drugs also with the new human urachal adenocarcinoma cell line (MISB18) established from the patient’s tumor. Conclusions All the tested ex vivo drug screening methods captured the patient’s tumor cells’ sensitivity to drugs that could be associated with the oncogenic KRASG12V mutation found in the patient’s tumor cells. Specific drug classes however resulted in differential dose response profiles dependent on the used cell culture method indicating that the choice of assay could bias results from ex vivo drug screening assays for selected drug classes.
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- 2020
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44. Global health burden of ambient PM2.5 and the contribution of anthropogenic black carbon and organic aerosols
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Sourangsu Chowdhury, Andrea Pozzer, Andy Haines, Klaus Klingmüller, Thomas Münzel, Pauli Paasonen, Arushi Sharma, Chandra Venkataraman, and Jos Lelieveld
- Subjects
PM2.5 ,BC ,aSOA ,POA ,Excess mortality ,Source sectors ,Environmental sciences ,GE1-350 - Abstract
Chronic exposure to fine particulate matter (PM2.5) poses a major global health risk, commonly assessed by assuming equivalent toxicity for different PM2.5 constituents. We used a data-informed global atmospheric model and recent exposure–response functions to calculate the health burden of ambient PM2.5 from ten source categories. We estimate 4.23 (95% confidence interval 3.0–6.14) million excess deaths annually from the exposure to ambient PM2.5. We distinguished contributions and major sources of black carbon (BC), primary organic aerosols (POA) and anthropogenic secondary organic aerosols (aSOA). These components make up to ∼20% of the total PM2.5 in South and East Asia and East Africa. We find that domestic energy use by the burning of solid biofuels is the largest contributor to ambient BC, POA and aSOA globally. Epidemiological and toxicological studies indicate that these compounds may be relatively more hazardous than other PM2.5 compounds such as soluble salts, related to their high potential to inflict oxidative stress. We performed sensitivity analyses by considering these species to be more harmful compared to other compounds in PM2.5, as suggested by their oxidative potential using a range of potential relative risks. These analyses show that domestic energy use emerges as the leading cause of excess mortality attributable to ambient PM2.5, notably in Asia and Africa. We acknowledge the uncertainties inherent in our assumed enhanced toxicity of the anthropogenic organic and BC aerosol components, which suggest the need to better understand the mechanisms and magnitude of the associated health risks and the consequences for regulatory policies. However our assessment of the importance of emissions from domestic energy use as a cause of premature mortality is robust to a range of assumptions about the magnitude of the excess risk.
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- 2022
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45. A 3D study on the amplification of regional haze and particle growth by local emissions
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Du, Wei, Dada, Lubna, Zhao, Jian, Chen, Xueshun, Daellenbach, Kaspar R., Xie, Conghui, Wang, Weigang, He, Yao, Cai, Jing, Yao, Lei, Zhang, Yingjie, Wang, Qingqing, Xu, Weiqi, Wang, Yuying, Tang, Guiqian, Cheng, Xueling, Kokkonen, Tom V., Zhou, Wei, Yan, Chao, Chu, Biwu, Zha, Qiaozhi, Hakala, Simo, Kurppa, Mona, Järvi, Leena, Liu, Yongchun, Li, Zhanqing, Ge, Maofa, Fu, Pingqing, Nie, Wei, Bianchi, Federico, Petäjä, Tuukka, Paasonen, Pauli, Wang, Zifa, Worsnop, Douglas R., Kerminen, Veli-Matti, Kulmala, Markku, and Sun, Yele
- Published
- 2021
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46. Significance of the organic aerosol driven climate feedback in the boreal area
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Yli-Juuti, Taina, Mielonen, Tero, Heikkinen, Liine, Arola, Antti, Ehn, Mikael, Isokääntä, Sini, Keskinen, Helmi-Marja, Kulmala, Markku, Laakso, Anton, Lipponen, Antti, Luoma, Krista, Mikkonen, Santtu, Nieminen, Tuomo, Paasonen, Pauli, Petäjä, Tuukka, Romakkaniemi, Sami, Tonttila, Juha, Kokkola, Harri, and Virtanen, Annele
- Published
- 2021
- Full Text
- View/download PDF
47. New particle formation and its effect on cloud condensation nuclei abundance in the summer Arctic: a case study in the Fram Strait and Barents Sea
- Author
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S. Kecorius, T. Vogl, P. Paasonen, J. Lampilahti, D. Rothenberg, H. Wex, S. Zeppenfeld, M. van Pinxteren, M. Hartmann, S. Henning, X. Gong, A. Welti, M. Kulmala, F. Stratmann, H. Herrmann, and A. Wiedensohler
- Subjects
Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
In a warming Arctic the increased occurrence of new particle formation (NPF) is believed to originate from the declining ice coverage during summertime. Understanding the physico-chemical properties of newly formed particles, as well as mechanisms that control both particle formation and growth in this pristine environment, is important for interpreting aerosol–cloud interactions, to which the Arctic climate can be highly sensitive. In this investigation, we present the analysis of NPF and growth in the high summer Arctic. The measurements were made on-board research vessel Polarstern during the PS106 Arctic expedition. Four distinctive NPF and subsequent particle growth events were observed, during which particle (diameter in a range 10–50 nm) number concentrations increased from background values of approx. 40 up to 4000 cm−3. Based on particle formation and growth rates, as well as hygroscopicity of nucleation and the Aitken mode particles, we distinguished two different types of NPF events. First, some NPF events were favored by negative ions, resulting in more-hygroscopic nucleation mode particles and suggesting sulfuric acid as a precursor gas. Second, other NPF events resulted in less-hygroscopic particles, indicating the influence of organic vapors on particle formation and growth. To test the climatic relevance of NPF and its influence on the cloud condensation nuclei (CCN) budget in the Arctic, we applied a zero-dimensional, adiabatic cloud parcel model. At an updraft velocity of 0.1 m s−1, the particle number size distribution (PNSD) generated during nucleation processes resulted in an increase in the CCN number concentration by a factor of 2 to 5 compared to the background CCN concentrations. This result was confirmed by the directly measured CCN number concentrations. Although particles did not grow beyond 50 nm in diameter and the activated fraction of 15–50 nm particles was on average below 10 %, it could be shown that the sheer number of particles produced by the nucleation process is enough to significantly influence the background CCN number concentration. This implies that NPF can be an important source of CCN in the Arctic. However, more studies should be conducted in the future to understand mechanisms of NPF, sources of precursor gases and condensable vapors, as well as the role of the aged nucleation mode particles in Arctic cloud formation.
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- 2019
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48. The impulse noise of TMS inside a 3 T and 9.4 T MRI
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Mikko Nyrhinen, Victor H. Souza, Juuso Korhonen, Heikki Sinisalo, Jaakko Paasonen, Jaakko O. Nieminen, Olli Gröhn, Risto J. Ilmoniemi, and Fa-Hsuan Lin
- Subjects
Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Published
- 2021
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49. In-situ multi-locus transcranial magnetic stimulation with concurrent functional magnetic resonance imaging at 9.4 T for small-animal studies
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Juuso T. Korhonen, Victor H. Souza, Jaakko Paasonen, Heikki Sinisalo, Mikko Nyrhinen, Maria Tikkanen, Jaakko O. Nieminen, Olli Gröhn, and Risto J. Ilmoniemi
- Subjects
Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Published
- 2021
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50. Classification of Difference Schemes of Maximum Possible Accuracy on Extended Symmetric Stencils for the Schrödinger Equation and the Heat Conduction Equation
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Paasonen, V. I.
- Published
- 2020
- Full Text
- View/download PDF
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