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Compaction of nucleic acids, namely DNA and RNA, determines their functions and involvement in vital cell processes including transcription, replication, DNA repair and translation. However, experimental probing of the compaction of nucleic acids is not straightforward. In this study, we suggest an approach for this probing using low-frequency Raman spectroscopy. Specifically, we show theoretically, computationally and experimentally the quantifiable correlation between the low-frequency Raman intensity from nucleic acids, magnitude of thermal fluctuations of atomic positions, and the compaction state of biomolecules. Noteworthily, we highlight that the LF Raman intensity differs by an order of magnitude for different samples of DNA, and even for the same sample in the course of long-term storage. The feasibility of the approach is further shown by assessment of the DNA compaction in the nuclei of plant cells. We anticipate that the suggested approach will enlighten compaction of nucleic acids and their dynamics during the key processes of the cell life cycle and under various factors, facilitating advancement of molecular biology and medicine.

Derivatives of naphthalene-diimide (NDI) are among the most studied and popular organic semiconductors showing n-type conductivity. However, the structure and optoelectronic properties of crystalline NDIs N -functionalized with conjugated donors have not been investigated yet. In this study, a novel donor-acceptor compound NDI-Stb bearing one NDI core, as an acceptor, and two stilbene moieties covalently linked via imide positions of NDI, as a donor, was synthesized. A combined experimental and theoretical approach was applied to study the structure and properties of NDI-Stb molecules and its crystals. We found and explained why optical absorption and high-frequency Raman spectra are inherited from those of donor and acceptor moieties, but photoluminescence is determined by the properties of the whole molecule. We resolved the structure of NDI-Stb single crystals and found that strong intermolecular interactions operate along two directions, for which NDI cores stack either on similar cores or on stilbene moieties. These interactions cause suppression of dynamic disorder indicated by a weak low-frequency Raman signal and solid-state luminescence enhancement. Ambipolar charge transport was predicted, and electron transport was experimentally observed in NDI-Stb polycrystalline thin films. The results obtained highlight the potential of using NDIs N -functionalized with conjugated donor moieties in optoelectronic applications, and improve the understanding of structure-property relationships necessary for the rational design of novel donor-acceptor organic semiconductors.

The phenomenon of phase change transition has been a fascinating research subject over decades due to a possibility of dynamically controlled materials properties, allowing the creation of optical devices with unique features. The present paper unravels the optical characteristics and terahertz (THz) dielectric permittivity of a novel phase change material (PCM), GeTe 2 , prepared by pulsed laser deposition (PLD) and their remarkable contrast in crystalline and amorphous states, in particular, a difference of 7 orders of magnitude in conductivity. The THz spectra were analyzed using the harmonic oscillator and Drude term. Using GeTe 2 PLD films, we designed and prepared a THz metasurface in the form of periodic structure and revealed a possibility of tuning the THz resonance either by a thermal control or light-induced crystallization response, thus achieving the dynamic and tunable functionality of the metastructure. We propose controlling the state of metasurface by observing the intensity characteristics of the Raman peak of 155 cm -1 . Density functional theory (DFT) modeling demonstrates that in the process of crystallization the mode intensity of 155 cm -1 assigned to Te-Te stretching in amorphous chain fragments decreases and disappears at full crystallization.

Two new peroxosolvates of drug-like compounds were synthesized and studied by a combination of X-ray crystallographic, Raman spectroscopic methods, and periodic DFT computations. The enthalpies of H-bonds formed by hydrogen peroxide (H 2 O 2 ) as a donor and an acceptor of protons were compared with the enthalpies of analogous H-bonds formed by water (H 2 O) in isomorphic (isostructural) hydrates. The enthalpies of H-bonds formed by H 2 O 2 as a proton donor turned out to be higher than the values of the corresponding H-bonds formed by H 2 O. In the case of H 2 O 2 as a proton acceptor in H-bonds, the ratio appeared reversed. The neutral O∙∙∙H-O/O∙∙∙H-N bonds formed by the lone electron pair of the oxygen atom of water were the strongest H-bonds in the considered crystals. In the paper, it was found out that the low-frequency Raman spectra of isomorphous crystalline hydrate and peroxosolvate of N-(5-Nitro-2-furfurylidene)-1-aminohydantoin are similar. As for the isostructural hydrate and peroxosolvate of the salt of protonated 2-amino-nicotinic acid and maleic acid monoanion, the Raman spectra are different.

Dynamic disorder manifested in fluctuations of charge transfer integrals considerably hinders charge transport in high-mobility organic semiconductors. Accordingly, strategies for suppression of the dynamic disorder are highly desirable. In this study, we suggest a novel promising strategy for suppression of dynamic disorder-tuning the molecular electrostatic potential. Specifically, we show that the intensities of the low-frequency (LF) Raman spectra for crystalline organic semiconductors consisting of π-isoelectronic small molecules (i.e. bearing the same number of π electrons)-benzothieno[3,2-b][1]benzothiophene (BTBT), chrysene, tetrathienoacene (TTA) and naphtho[1,2-b:5,6-b']dithiophene (NDT)-differ significantly, indicating significant differences in the dynamic disorder. This difference is explained by suppression of the dynamic disorder in chrysene and NDT because of stronger intermolecular electrostatic interactions. As a result, guidelines for the increase of the crystal rigidity for the rational design of high-mobility organic semiconductors are suggested.

Electron-phonon interaction strongly affects and often limits charge transport in organic semiconductors (OSs). However, approaches to its experimental probing are still in their infancy. In this study, we probe the local electron-phonon interaction (quantified by the charge-transfer reorganization energy) in small-molecule OSs by means of Raman spectroscopy. Applying density functional theory calculations to four series of oligomeric OSs-polyenes, oligofurans, oligoacenes, and heteroacenes-we extend the previous evidence that the intense Raman vibrational modes considerably contribute to the reorganization energy in several molecules and molecular charge-transfer complexes, to a broader scope of OSs. The correlation between the contribution of the vibrational mode to the reorganization energy and its Raman intensity is especially prominent for the resonance conditions. The experimental Raman spectra obtained with various excitation wavelengths are in good agreement with the theoretical ones, indicating the reliability of our calculations. We also establish for the first time relations between the spectrally integrated Raman intensity, the reorganization energy, and the molecular polarizability for the resonance and off-resonance conditions. The results obtained are expected to facilitate the experimental studies of the electron-phonon interaction in OSs for an improved understanding of charge transport in these materials.

Properties of the organic semiconductors can be finely tuned via changes in their molecular structure. However, the relationship between the molecular structure, molecular packing, and (opto)electronic properties of the organic semiconductors to guide their smart design remains elusive. In this study, we address computationally and experimentally the impact of subtle modification of a thiophene-phenylene co-oligomer CF 3 -PTTP-CF 3 on the molecular properties, crystal structure, charge transport, and optoelectronic properties. This modification consists in the substitution of two C-H atom pairs by N atoms in the thiophene units and hence converting them to thiazole units. A dramatic effect of the N-substitution on the crystal structure-the crossover from the herringbone packing motif to π-stacking-is attributed to significant changes in the molecular electrostatic potential. The changes in the molecular and crystal structure resulting from the N-substitution clearly reveal themselves in the Raman spectra. The increase of the calculated electron mobility in the corresponding crystals as a result of the N-substitution is rationalized in terms of the changes in the molecular and crystal structure. The charge transport, electroluminescence, and photoelectric properties are compared in thin-film organic field-effect transistors based on CF 3 -PTTP-CF 3 and its N-substituted counterpart. An intriguing similarity between the effects of N-substitution in the thiophene rings and fluorination of the thiophene-phenylene oligomer is revealed, which is probably associated with a more general effect of electronegative substitution. The obtained results are anticipated to facilitate the rational design of organic semiconductors., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)

Synthesis of multicomponent solid forms is an important method of modifying and fine-tuning the most critical physicochemical properties of drug compounds. The design of new multicomponent pharmaceutical materials requires reliable information about the supramolecular arrangement of molecules and detailed description of the intermolecular interactions in the crystal structure. It implies the use of a combination of different experimental and theoretical investigation methods. Organic salts present new challenges for those who develop theoretical approaches describing the structure, spectral properties, and lattice energy E latt . These crystals consist of closed-shell organic ions interacting through relatively strong hydrogen bonds, which leads to E latt > 200 kJ/mol. Some technical problems that a user of periodic (solid-state) density functional theory (DFT) programs encounters when calculating the properties of these crystals still remain unsolved, for example, the influence of cell parameter optimization on the E latt value, wave numbers, relative intensity of Raman-active vibrations in the low-frequency region, etc. In this work, various properties of a new two-component carbendazim maleate crystal were experimentally investigated, and the applicability of different DFT functionals and empirical Grimme corrections to the description of the obtained structural and spectroscopic properties was tested. Based on this, practical recommendations were developed for further theoretical studies of multicomponent organic pharmaceutical crystals.

In some donor-acceptor blends based on conjugated polymers, a pronounced charge-transfer complex (CTC) forms in the electronic ground state. In contrast to small-molecule donor-acceptor blends, the CTC concentration in polymer:acceptor solution can increase with the acceptor content in a threshold-like way. This threshold-like behavior was earlier attributed to the neighbor effect (NE) in the polymer complexation, i.e., next CTCs are preferentially formed near the existing ones; however, the NE origin is unknown. To address the factors affecting the NE, we record the optical absorption data for blends of the most studied conjugated polymers, poly(2-methoxy-5-(2-ethylhexyloxy)-1,4-phenylenevinylene) (MEH-PPV) and poly(3-hexylthiophene) (P3HT), with electron acceptors of fluorene series, 1,8-dinitro-9,10-antraquinone (), and 7,7,8,8-tetracyanoquinodimethane () in different solvents, and then analyze the data within the NE model. We have found that the NE depends on the polymer and acceptor molecular skeletons and solvent, while it does not depend on the acceptor electron affinity and polymer concentration. We conclude that the NE operates within a single macromolecule and stems from planarization of the polymer chain involved in the CTC with an acceptor molecule; as a result, the probability of further complexation with the next acceptor molecules at the adjacent repeat units increases. The steric and electronic microscopic mechanisms of NE are discussed.

Disorder in conjugated polymers is a general drawback that limits their use in organic electronics. We show that an archetypical conjugated polymer, MEH-PPV, enhances its local structural and electronic order upon addition of an electronic acceptor, trinitrofluorenone (TNF). First, acceptor addition in MEH-PPV results in a highly structured XRD pattern characteristic for semicrystalline conjugated polymers. Second, the surface roughness of the MEH-PPV films increases upon small acceptor addition, implying formation of crystalline nanodomains. Third, the low-frequency Raman features of the polymer are narrowed upon TNF addition and indicate decreased inhomogeneous broadening. Finally, the photoinduced absorption and surface photovoltage spectroscopy data show that photoexcited and dark polymer intragap electronic states assigned to deep defects disappear in the blend. We relate the enhanced order to formation of a charge-transfer complex between MEH-PPV and TNF in the electronic ground state. These findings may be of high importance to control structural properties as they demonstrate an approach to increasing the order of a conjugated polymer by using an acceptor additive.

Donor-acceptor blends based on conjugated polymers are the heart of state-of-the-art polymer solar cells, and the control of the blend morphology is crucial for their efficiency. As the film morphology can inherit the polymer conformational state from solution, the approaches for probing and controlling the polymer conformational state in the blends are of high importance. In this study, we show that the macromolecular dynamics in solutions of the archetypical conjugated polymer, MEH-PPV, is essentially changed upon addition of an acceptor 2,4,7-trinitrofluorenone (TNF) by using dynamic light scattering (DLS). We have observed four new types of the macromolecular dynamics absent in the parent polymer determined by the polymer and acceptor content. The MEH-PPV : TNF ground-state charge-transfer complex (CTC) is suggested to result in these dynamics. In the dilute polymer solution, the CTC formation leads to slower dynamics as compared with the pristine polymer. This is evidence of aggregates formed by intercoil links that are the CTCs involving two conjugated segments of different coils with acceptor molecules being sandwiched between them. At low acceptor content, the aggregates are not stable but at high acceptor content, they are. In the semidilute solution at low acceptor content, the dynamics becomes faster as compared with the pristine polymer that is explained by confinement of the coupled motions of entangled polymer chains. At high acceptor content, the dynamics is far much slower with a characteristic long-range correlation at the scale 3-5 μm that is explained by aggregation of polymer chains in clusters. One can expect that the DLS technique could become a useful tool to study the nano- and microstructure of donor-acceptor conjugated polymer blends to achieve controllable morphology in the corresponding blend films.

The donor-acceptor ground-state charge-transfer complex (CTC) formed in solution between a conjugated polymer, poly[methoxy-5-(2'-ethylhexyloxy)-1,4-phenylene-vinylene] (MEH-PPV), and a low-molecular-weight organic acceptor, 2,4,7-trinitrofluorenone (TNF), is studied by optical absorption and Raman spectroscopy. The CTC absorption as a function of TNF content shows a threshold increase that is in conflict with the model commonly used for optical characterization of low-molecular-weight CTCs. The shift of MEH-PPV characteristic Raman band at 1585 cm(-1) also exhibits a threshold dependence upon TNF addition. We assign the threshold in both the absorption and Raman data to the CTC concentration. To describe the threshold in the terms of the common model, we extend it by introducing an association function instead of a constant. The association function of acceptor concentration has been calculated to be K(a) approximately 1.5-3 M(-1) below the threshold, to increase steeply up to K(a) approximately 6-7.5 M(-1) just after the threshold, and then to grow gradually up to K(a) approximately 40 M(-1). The CTC molar absorption coefficient has been found to be epsilon(CTC) = (12.7 +/- 0.6) x 10(3) M(-1) cm(-1) at 635 nm. We explain the threshold as a result of the positive feedback: the CTC formation induces planarizaton of conjugated polymer segments that in turn facilitates further CTC formation.