22 results on '"Parhom Towfighi"'
Search Results
2. A retrospective analysis of pain and opioid usage in head and neck free flap reconstruction
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Parhom Towfighi, Alison Hill, Jason R. Crossley, Amanda Walsh, James A. Leonard, Jonathan P. Giurintano, Matthew L. Pierce, and Michael J. Reilly
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free flap reconstruction ,head and neck ,multimodal analgesia ,opioids ,postoperative pain ,Otorhinolaryngology ,RF1-547 ,Surgery ,RD1-811 - Abstract
Abstract Objectives Investigate opioid usage and postoperative pain in patients undergoing head and neck free flap surgery. Methods A retrospective review of 100 consecutive patients undergoing head and neck free flap reconstruction at two academic centers was performed. Data captured included demographics, postoperative inpatient pain, pain at postoperative visits, morphine equivalent doses (MEDs) administration, medication history, and comorbidities. Data were analyzed using regression models, χ2 tests, and student's t‐tests. Results Seventy‐three percent of patients were discharged with opioid medication, with over half (53.4%) continuing to take opioids at their second postoperative visit, and over one‐third (34.2%) continuing to take them around 4‐month postoperatively. One out of every five (20.3%) opioid‐naïve patients chronically took opioids postoperatively. There was a poor association between inpatient postoperative pain scores and daily MEDs administered (R2 = 0.13, 0.17, and 0.22 in postoperative Days 3, 5, and 7, respectively). Neither preoperative radiotherapy nor postoperative complications were associated with an increase in opioid usage. Conclusions For patients undergoing head and neck free flap operations, opioid medications are commonly used for postoperative analgesia. This practice may increase the chance an opioid‐naïve patient uses opioids chronically. We found a poor association between MEDs administered and patient‐reported pain scores, which suggests that standardized protocols aimed at optimizing analgesia while reducing opioid administration may be warranted. Level of Evidence: 3 (Retrospective cohort study).
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- 2023
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3. Prophylactic Lymphovenous Bypass at the Time of Axillary Lymph Node Dissection Decreases Rates of Lymphedema
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Romina Deldar, MD, Daisy Spoer, MS, Nisha Gupta, MS, Parhom Towfighi, BS, Marc Boisvert, MD, Patricia Wehner, MD, Ian T. Greenwalt, MD, Eric M. Wisotzky, MD, Katherine Power, MD, Kenneth L. Fan, MD, and Laura K. Tom, MD
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Surgery ,RD1-811 - Abstract
Background:. Breast cancer-related lymphedema impacts 30% to 47% of women who undergo axillary lymph node dissection (ALND). Studies evaluating the effectiveness of prophylactic lymphovenous bypass (LVB) at the time of ALND have had small patient populations and/or short follow-up. The aim of this study is to quantitatively and qualitatively evaluate prophylactic LVB in patients with breast cancer. Methods:. A retrospective review of patients who underwent ALND from 2018 to 2022 was performed. Patients were divided into cohorts based on whether they underwent prophylactic LVB at the time of ALND. Primary outcomes included 30-day complications and lymphedema. Lymphedema was quantitatively evaluated by bioimpedance analysis, with L-dex scores >7.1 indicating lymphedema. Results:. One-hundred five patients were identified. Sixty-four patients (61.0%) underwent ALND and 41 patients (39.0%) underwent ALND+LVB. Postoperative complications were similar between the cohorts. At a median follow-up of 13.3 months, lymphedema occurred significantly higher in the ALND only group compared with ALND+LVB group (50.0% vs 12.2%; P < 0.001). ALND without LVB was an independent risk factor for lymphedema development (odds ratio, 4.82; P = 0.003). Conclusions:. Prophylactic LVB decreases lymphedema and is not associated with increased postoperative complications. A multidisciplinary team approach is imperative to decrease lymphedema development in this patient population.
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- 2023
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4. Clinical management of myoid hamartomas of the breast: A case report and literature review
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Nathan Aminpour, Olutayo Sogunro, Parhom Towfighi, Byoung Uk Park, and Marc Boisvert
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Myoid hamartoma ,Breast oncology ,Clinical management ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Background: Myoid Hamartoma of the breast (MHB) is an extremely rare benign breast lesion composed of mammary ducts and lobules, fibrous stroma, adipose tissue, and smooth muscle. Due to its rarity, the clinical management of MHB is not well described. Surgical excision is the most common form of management. This study reviews the current literature on the clinical management of MHB and describes a case report of a young patient presenting with MHB managed with surveillance and shared-decision making. Materials and methods: A healthy 23-year-old female presented with a one-year history of a palpable left breast mass. Her right breast exam was normal. Ultrasound of the left breast revealed a 2.7 cm × 1.4 cm × 2.4 cm lobulated mass at the one o'clock position. The mass caused slight discomfort to palpation but otherwise had no associated skin changes. Ultrasound-guided biopsy revealed a left breast myoid hamartoma. Management options were presented to the patient, and she elected to observe the mass with surveillance imaging. Results: There have been no reported cases in the literature of malignant transformation of MHB. Rather than rely on reflexive surgical excision of MHB, our review suggests that surveillance and routine imaging may be an appropriate form of clinical management in patients who present with a favorable clinical and histopathological profile which includes: a low MIB-1 proliferative index, low breast cancer risk assessment score, lesion size less than 1.2 cm, and radiological-pathological concordance. Conclusion: Further research is needed to determine the clinical significance and threshold levels of these clinical and histopathological factors in patient care. However, given current trends to minimize over treatment in breast pathology, we pose that observation of MHB can be performed when favorable clinical criteria is met.
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- 2022
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5. Perturbations of the T-cell immune repertoire in kidney transplant rejection
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Tara K. Sigdel, Paul A. Fields, Juliane Liberto, Izabella Damm, Maggie Kerwin, Jill Hood, Parhom Towfighi, Marina Sirota, Harlan S. Robins, and Minnie M. Sarwal
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kidney transplantation ,TCR sequencing ,acute rejection ,immune repertoire ,T cell-mediated rejection ,antibody-mediated rejection ,Immunologic diseases. Allergy ,RC581-607 - Abstract
In this cross-sectional and longitudinal analysis of mapping the T-cell repertoire in kidney transplant recipients, we have investigated and validated T-cell clonality, immune repertoire chronology at rejection, and contemporaneous allograft biopsy quantitative tissue injury, to better understand the pathobiology of acute T-cell fraction, T-cell repertoire and antibody-mediated kidney transplant rejection. To follow the dynamic evolution of T-cell repertoire changes before and after engraftment and during biopsy-confirmed acute rejection, we sequenced 323 peripheral blood samples from 200 unique kidney transplant recipients, with (n=100) and without (n=100) biopsy-confirmed acute rejection. We report that patients who develop acute allograft rejection, have lower (p=0.01) T-cell fraction even before transplantation, followed by its rise after transplantation and at the time of acute rejection accompanied by high TCR repertoire turnover (p=0.004). Acute rejection episodes occurring after the first 6 months post-transplantation, and those with a component of antibody-mediated rejection, had the highest turnover; p=0.0016) of their T-cell repertoire. In conclusion, we validated that detecting repertoire changes in kidney transplantation correlates with post-transplant rejection episodes suggesting that T-cell receptor sequencing may provide recipient pre-transplant and post-transplant predictors of rejection risk.
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- 2022
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6. A Multidisciplinary Model to Managing Patients with Hidradenitis Suppurativa at a Single-center Wound-care Clinic
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John Bovill, Zoe K. Haffner, Parhom Towfighi, Aleek Aintablian, Holly Shan, Areeg Abu El Hawa, MD, Robert Slamin, MD, Carol Deane Benedict, and Karen Kim Evans, MD
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Surgery ,RD1-811 - Published
- 2022
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7. 22. LONG-TERM OUTCOMES OF RECONSTRUCTION FOR WEIGHT-BEARING HEEL ULCERS USING FREE TISSUE TRANSFER
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Romina Deldar, MD, Adaah Sayyed, BS, Parhom Towfighi, BS, Christopher E. Attinger, MD, and Karen K. Evans, MD
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Surgery ,RD1-811 - Published
- 2022
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8. PC29. LONG-TERM OUTCOMES OF RECONSTRUCTION AFTER PARTIAL FOOT AMPUTATIONS USING FREE TISSUE TRANSFER
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Romina Deldar, MD, Zoe Haffner, BS, Stephanie Shin, BS, Parhom Towfighi, BS, Christopher E. Attinger, MD, and Karen K. Evans, MD
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Surgery ,RD1-811 - Published
- 2022
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9. Red blood cell phenotype fidelity following glycerol cryopreservation optimized for research purposes.
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Stephen C Rogers, Laura B Dosier, Timothy J McMahon, Hongmei Zhu, David Timm, Hengtao Zhang, Joseph Herbert, Jacqueline Atallah, Gregory M Palmer, Asa Cook, Melanie Ernst, Jaya Prakash, Mark Terng, Parhom Towfighi, Reid Doctor, Ahmed Said, Matthew S Joens, James A J Fitzpatrick, Gabi Hanna, Xue Lin, Julie A Reisz, Travis Nemkov, Angelo D'Alessandro, and Allan Doctor
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Medicine ,Science - Abstract
Intact red blood cells (RBCs) are required for phenotypic analyses. In order to allow separation (time and location) between subject encounter and sample analysis, we developed a research-specific RBC cryopreservation protocol and assessed its impact on data fidelity for key biochemical and physiological assays. RBCs drawn from healthy volunteers were aliquotted for immediate analysis or following glycerol-based cryopreservation, thawing, and deglycerolization. RBC phenotype was assessed by (1) scanning electron microscopy (SEM) imaging and standard morphometric RBC indices, (2) osmotic fragility, (3) deformability, (4) endothelial adhesion, (5) oxygen (O2) affinity, (6) ability to regulate hypoxic vasodilation, (7) nitric oxide (NO) content, (8) metabolomic phenotyping (at steady state, tracing with [1,2,3-13C3]glucose ± oxidative challenge with superoxide thermal source; SOTS-1), as well as in vivo quantification (following human to mouse RBC xenotransfusion) of (9) blood oxygenation content mapping and flow dynamics (velocity and adhesion). Our revised glycerolization protocol (40% v/v final) resulted in >98.5% RBC recovery following freezing (-80°C) and thawing (37°C), with no difference compared to the standard reported method (40% w/v final). Full deglycerolization (>99.9% glycerol removal) of 40% v/v final samples resulted in total cumulative lysis of ~8%, compared to ~12-15% with the standard method. The post cryopreservation/deglycerolization RBC phenotype was indistinguishable from that for fresh RBCs with regard to physical RBC parameters (morphology, volume, and density), osmotic fragility, deformability, endothelial adhesivity, O2 affinity, vasoregulation, metabolomics, and flow dynamics. These results indicate that RBC cryopreservation/deglycerolization in 40% v/v glycerol final does not significantly impact RBC phenotype (compared to fresh cells).
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- 2018
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10. The Impact on Medical Student Stress in Relation to a Change in USMLE Step 1 Examination Score Reporting to Pass/Fail
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Kahlo Baniadam, Seleem Elkadi, Parhom Towfighi, Nathan Aminpour, Ronak Sutariya, and H. Carrie Chen
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Medicine (miscellaneous) ,Education - Published
- 2023
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11. Free flap reconstruction of plantar<scp>weight‐bearing</scp>heel defects:<scp>Long‐term</scp>functional and<scp>patient‐reported</scp>outcomes
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Adaah A. Sayyed, Parhom Towfighi, Romina Deldar, Christopher E. Attinger, and Karen K. Evans
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Limb Salvage ,Free Tissue Flaps ,Amputation, Surgical ,Weight-Bearing ,Postoperative Complications ,Treatment Outcome ,Humans ,Heel ,Surgery ,Patient Reported Outcome Measures ,Foot Ulcer ,Hypoalbuminemia ,Ulcer ,Retrospective Studies - Abstract
Non-healing plantar weight-bearing heel ulcers are a challenging problem to treat. Free tissue transfer (FTT) reconstruction of the heel is an opportunity for limb salvage to preserve gait and ambulation. The aim of this study is to describe surgical and functional outcomes in patients who underwent FTT to treat chronic heel ulcers.A retrospective review of patients who underwent FTT for plantar heel ulcers from 2011 to 2021 was conducted. Patient demographics, comorbidities, perioperative data, postoperative complications, and long-term outcomes were recorded. Primary outcomes included flap success, complications, postoperative ambulation, patient-reported outcome measures and limb salvage, with patients stratified into limb salvage or eventual amputation groups.Forty-four patients underwent 45 heel reconstructions. Average age and BMI were 57.3 years and 30.1 kg/mFTT is an effective alternative to amputation in patients with chronic heel ulcers. Proper patient selection, preoperative optimization, and postoperative care are imperative to the success of this limb salvage procedure.
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- 2022
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12. Triple negative breast cancer and reconstruction: Predictors of recurrence, complications, and mortality
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Olutayo Sogunro, Adaah A. Sayyed, Nathan Aminpour, Parhom Towfighi, Mansi Maini, Monika Masanam, Romina Deldar, Allison Murray, Lucy De La Cruz, Ian Greenwalt, and Jennifer D. Son
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Cancer Research ,Oncology ,Mammaplasty ,Humans ,Breast Neoplasms ,Female ,Triple Negative Breast Neoplasms ,General Medicine ,Middle Aged ,Neoplasm Recurrence, Local ,Mastectomy ,Retrospective Studies - Abstract
BACKGROUND: Only 42% of all breast cancer patients undergoing mastectomy elect for breast reconstruction. OBJECTIVE: We evaluate factors impacting complications, recurrence, and mortality in triple-negative breast cancer (TNBC) patients undergoing reconstruction. METHODS: Reconstructive TNBC patients at a single institution from 2010 to 2020 were retrospectively reviewed. Patient demographics, cancer characteristics, reconstruction choice, and complications were collected. Statistical significance was defined at p < 0.05. RESULTS: A total of 131 patients were identified. Average age was 47.8 years, 50.4% were Caucasian and 36.4% were African American. Most patients had invasive ductal carcinoma (90.8%), and most underwent nipple-sparing (41.2%) or skin-sparing (38.9%) mastectomies. Twenty-one patients (16.0%) experienced postoperative complications. Patients with complications tended to be older (52.1 versus 46.9 years, p = 0.052). At mean follow-up of 52.1 months, 14.5% experienced cancer recurrence and 5.3% died. Deceased patients were significantly younger at diagnosis (42.2 versus 48.5 years, p = 0.008) and had a lower BMI compared to surviving patients (21.2 versus 26.9 kg/m2; p = 0.014). Patients younger than age 45 years had higher Ki-67 than those older than 45 years (80.0% versus 60.0%, p = 0.013). Outcomes in autologous- versus implant-based reconstruction were not significantly different. CONCLUSIONS: In TNBC post-mastectomy reconstruction patients, age and BMI were predictors of mortality while race, smoking history, reconstruction choice, or type of implant-based reconstruction had no significant effect on these outcomes. SYNOPSIS: The purpose of this study is to evaluate factors that impact complications, recurrence, and mortality in triple negative breast cancer (TNBC) patients undergoing reconstruction. We identified BMI, neoadjuvant chemotherapy, and age as predictors of complications, recurrence, and mortality in TNBC.
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- 2022
13. A Retrospective Cohort Study of the Impact of Upper Lip Tie Release on Breastfeeding in Infants
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Parhom Towfighi, Stephanie Y. Johng, Michelle M. Lally, and Earl H. Harley
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Breast Feeding ,Lingual Frenum ,Health Policy ,Maternity and Midwifery ,Obstetrics and Gynecology ,Humans ,Infant ,Female ,Pediatrics ,Ankyloglossia ,Lip ,Retrospective Studies - Published
- 2022
14. A comparative analysis of males and females with breast cancer undergoing mastectomy using the American College of Surgeon's National Surgical Quality Improvement Project (NSQIP)
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Parhom Towfighi, Romina Deldar, Zoe K. Haffner, Nathan Aminpour, Olutayo Sogunro, Areeg A. Abu El Hawa, Marc Boisvert, and Kenneth L. Fan
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Male ,Surgeons ,Cancer Research ,Postoperative Complications ,Oncology ,Databases, Factual ,Humans ,Breast Neoplasms ,Female ,Quality Improvement ,Mastectomy ,United States ,Retrospective Studies - Abstract
There is a paucity of literature comparing the postoperative outcomes of males and females with breast cancer who undergo mastectomy. The aim of this study is to evaluate the comorbidities and 30-day post-mastectomy complication rates among males and females.We performed a retrospective analysis of breast cancer patients who underwent mastectomy from 2014 to 2016 using the American College of Surgeon's National Surgical Quality Improvement Project database. Data including patient demographics, comorbidities, and 30-day surgical and medical complications were collected. Statistical analysis included Chi-square and Fisher's exact tests for categorical variables and Student T-tests for continuous variables. Statistical significance was defined as p 0.05.A total of 15,167 patients were identified. There were 497 males (3.3%) and 14,670 females (96.7%). Age was significantly higher in females compared to males (63.5 vs. 57.6 years, p 0.001). Body mass index (BMI) at time of surgery was also higher in males (30.0 vs. 29.3 kg/mOur findings suggest that differences in age, BMI, and comorbidities between males and females do not significantly impact 30-day medical or surgical complications following total mastectomy for breast cancer. Further research is warranted to identify perioperative risk factors that influence post-mastectomy complication rates.3 (Retrospective cohort study).
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- 2022
15. Mass cytometry reveals single-cell kinetics of cytotoxic lymphocyte evolution in CMV-infected renal transplant patients
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Kenichi, Ishiyama, Janice, Arakawa-Hoyt, Oscar A, Aguilar, Izabella, Damm, Parhom, Towfighi, Tara, Sigdel, Stanley, Tamaki, Joel, Babdor, Matthew H, Spitzer, Elaine F, Reed, Minnie M, Sarwal, Lewis L, Lanier, and Otto, Yang
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Adult ,Graft Rejection ,Male ,Multidisciplinary ,Cytomegalovirus ,Cell Separation ,CD8-Positive T-Lymphocytes ,Middle Aged ,Flow Cytometry ,Lymphocyte Activation ,Kidney Transplantation ,Killer Cells, Natural ,Kinetics ,Cytomegalovirus Infections ,Humans ,Female ,Viremia ,Single-Cell Analysis ,NK Cell Lectin-Like Receptor Subfamily C - Abstract
Significance Memory-like NK cells (NKG2C + CD57 + FcεRIγ – ) are established during CMV infection. Here, mass cytometry tracked the in vivo kinetics of CMV-induced memory NK cells generation and identified a unique subset of NKG2C + CD57 + FcεRIγ low–dim as potentially prememory-like NK cells in CMV-infected kidney transplant patients. The study demonstrated that prememory-like NK cells with a high cytotoxic profile proliferate along with accumulation of new memory-like NK cells, whereas preexisting memory-like NK cells decreased in the peripheral blood after transplantation. Moreover, NKG2C + CD8 + T cells and cytotoxic γδ T cells also expand during CMV infection. This interplay of three different cytotoxic lymphocytes demonstrates a combinatorial immune response against CMV infection, which may contribute to preventing CMV-associated complication in organ transplantation.
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- 2022
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16. Postmastectomy Reconstruction in Male Breast Cancer
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Romina Deldar, Adaah A. Sayyed, Parhom Towfighi, Nathan Aminpour, Olutayo Sogunro, Jennifer D. Son, Kenneth L. Fan, and David H. Song
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Male ,Breast Implants ,Mammaplasty ,Breast Neoplasms ,Middle Aged ,Surgical Flaps ,Breast Neoplasms, Male ,Postoperative Complications ,Oncology ,Internal Medicine ,Humans ,Surgery ,Female ,Mastectomy ,Aged - Abstract
Introduction. Less than 1% of all breast cancers are diagnosed in males. In females, postmastectomy breast reconstruction is associated with increased patient satisfaction. However, there is a paucity of literature describing reconstructive options for postmastectomy deformity in the male chest. The purpose of this systematic review was to evaluate postmastectomy reconstruction outcomes in males with breast cancer. Methods. A systematic review was performed in accordance with PRISMA guidelines. Ovid MEDLINE, Embase, Cochrane, and Web of Science were queried for records pertaining to the study question using medical subject heading (MeSH) terms such as “male breast cancer,” “mastectomy,” and “reconstruction.” No limitations were placed on the year of publication, country of origin, or study size. Study characteristics and patient demographics were collected. Primary outcomes of interest included postoperative complications, recurrence rate, and mortality rate. Results. A total of 11 articles examining 29 male patients with breast cancer who underwent postmastectomy reconstruction were included for analysis. Literature was most commonly available in the form of case reports. The average age was 59.6 +/−11.4 years. Reconstruction methods included fat grafting (n = 1, 3.4%), silicone implants (n = 1, 3.4%), and autologous chest wall reconstruction with local flaps (n = 26, 89.7%). Postoperative complications occurred in two patients (6.8%), including partial nipple necrosis (n = 1) and hypertrophic scarring (n = 1). Of the studies reporting patient satisfaction, all patients were pleased with the aesthetic appearance of their chest. Conclusion. This systematic review revealed the limited availability of research regarding postmastectomy chest reconstruction in males with breast cancer. Nevertheless, the evidence available suggests that reconstruction can restore a patient’s body image and, thus, should be regularly considered and discussed with male patients. Larger studies are warranted to further shed light on this population.
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- 2022
17. A retrospective cohort study comparing reconstructive techniques and outcomes in post-mastectomy triple negative breast cancer patients
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Adaah A. Sayyed, Parhom Towfighi, Romina Deldar, Nathan Aminpour, Olutayo Sogunro, Mansi Maini, Monika Masanam, Jennifer D. Son, Kenneth L. Fan, and David H. Song
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General Medicine - Published
- 2023
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18. 235.4: Analyzing the Impact of T-Cell Receptor Diversity in Acute Kidney Transplant Rejection
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Tara Sigdel, Paul Fields, Juliane Liberto, Izabella Damm, Maggie Kerwin, Jill Hood, Parhom Towfighi, Marina Sirota, Harlan Robins, and Minnie Sarwal
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Transplantation - Published
- 2022
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19. Optimizing Detection of Kidney Transplant Injury by Assessment of Donor-Derived Cell-Free DNA via Massively Multiplex PCR
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Izabella Damm, Paul Billings, Szu-Chuan Hseish, Samantha Navarro, Chitranon Chan-on, Sarah A. Prins, Styrmir Sigurjonsson, Solomon Moshkevich, Tudor Constantin, Tara K. Sigdel, Minnie M. Sarwal, Reuben D. Sarwal, Juliane Liberto, Eser Kirkizlar, Felipe Acosta Archila, Bernhard Zimmermann, Zachary Demko, Allison M. Ryan, and Parhom Towfighi
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medicine.medical_specialty ,Kidney Disease ,Clinical Sciences ,030232 urology & nephrology ,Urology ,Renal and urogenital ,lcsh:Medicine ,kidney transplantation ,Single-nucleotide polymorphism ,030230 surgery ,Kidney transplant ,Article ,03 medical and health sciences ,0302 clinical medicine ,Genotype ,Multiplex polymerase chain reaction ,Biopsy ,medicine ,SNP ,cfDNA ,Kidney transplantation ,screening and diagnosis ,Transplantation ,medicine.diagnostic_test ,business.industry ,lcsh:R ,General Medicine ,Organ Transplantation ,medicine.disease ,4.1 Discovery and preclinical testing of markers and technologies ,Detection ,surgical procedures, operative ,Cell-free fetal DNA ,rejection ,business - Abstract
Standard noninvasive methods for detecting renal allograft rejection and injury have poor sensitivity and specificity. Plasma donor-derived cell-free DNA (dd-cfDNA) has been reported to accurately detect allograft rejection and injury in transplant recipients and shown to discriminate rejection from stable organ function in kidney transplant recipients. This study used a novel single nucleotide polymorphism (SNP)-based massively multiplexed PCR (mmPCR) methodology to measure dd-cfDNA in various types of renal transplant recipients for the detection of allograft rejection/injury without prior knowledge of donor genotypes. A total of 300 plasma samples (217 biopsy-matched: 38 with active rejection (AR), 72 borderline rejection (BL), 82 with stable allografts (STA), and 25 with other injury (OI)) were collected from 193 unique renal transplant patients, dd- cfDNA was processed by mmPCR targeting 13,392 SNPs. Median dd-cfDNA was significantly higher in samples with biopsy-proven AR (2.3%) versus BL (0.6%), OI (0.7%), and STA (0.4%) (p <, 0.0001 all comparisons). The SNP-based dd-cfDNA assay discriminated active from non-rejection status with an area under the curve (AUC) of 0.87, 88.7% sensitivity (95% CI, 77.7&ndash, 99.8%) and 72.6% specificity (95% CI, 65.4&ndash, 79.8%) at a prespecified cutoff (>, 1% dd-cfDNA). Of 13 patients with AR findings at a routine protocol biopsy six-months post transplantation, 12 (92%) were detected positive by dd-cfDNA. This SNP-based dd-cfDNA assay detected allograft rejection with superior performance compared with the current standard of care. These data support the feasibility of using this assay to detect disease prior to renal failure and optimize patient management in the case of allograft injury.
- Published
- 2018
20. Fractionation of Soluble Proteins Using DEAE-Sepharose, SP-Sepharose, and Phenyl Sepharose Chromatographies for Proteomics
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Parhom, Towfighi, Jacob, Shaw, and Tara, Sigdel
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Proteomics ,Proteome ,Sepharose ,Proteins ,Chemical Fractionation ,Chromatography, Agarose ,Peptide Mapping ,Solubility ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Animals ,Chemical Precipitation ,Humans ,Electrophoresis, Gel, Two-Dimensional ,Electrophoresis, Polyacrylamide Gel - Abstract
In order to simplify a complex mixture of soluble proteins from tissues, a protocol to fractionate samples prior to two-dimensional (2D) gel electrophoresis has been developed. These methods involve the use of DEAE-Sepharose, SP-Sepharose, and phenyl Sepharose chromatographic columns and the fractionation of the protein mixtures based on differential anionic, cationic, and hydrophobic properties of the proteins, respectively. Fractionation of the soluble proteins with DEAE-Sepharose can result in an increase in the number of detectable 2D gel spots. These gel spots are amenable to protein identification by using in-gel trypsin digestions, matrix-assisted laser desorption/ionization time-of-flight mass spectrometry, and peptide mass fingerprinting. The DEAE-Sepharose column fractionation acts to partition soluble proteins from cell extracts. Similarly, a SP-Sepharose column can fractionate soluble proteins and increase the number of detectable gel spots. Lastly, fractionation of cell extract with a phenyl Sepharose column can also result in an increase in the number of detectable 2D gel spots. This chapter describes an easy, inexpensive way to fractionate soluble proteins and a way to better profile proteomes.
- Published
- 2017
21. Fractionation of Soluble Proteins Using DEAE-Sepharose, SP-Sepharose, and Phenyl Sepharose Chromatographies for Proteomics
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Jacob S. Shaw, Parhom Towfighi, and Tara K. Sigdel
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Gel electrophoresis ,Sepharose ,chemistry.chemical_compound ,Chromatography ,DEAE-Sepharose ,chemistry ,Peptide mass fingerprinting ,Proteome ,medicine ,Fractionation ,Trypsin ,Mass spectrometry ,medicine.drug - Abstract
In order to simplify a complex mixture of soluble proteins from tissues, a protocol to fractionate samples prior to two-dimensional (2D) gel electrophoresis has been developed. These methods involve the use of DEAE-Sepharose, SP-Sepharose, and phenyl Sepharose chromatographic columns and the fractionation of the protein mixtures based on differential anionic, cationic, and hydrophobic properties of the proteins, respectively. Fractionation of the soluble proteins with DEAE-Sepharose can result in an increase in the number of detectable 2D gel spots. These gel spots are amenable to protein identification by using in-gel trypsin digestions, matrix-assisted laser desorption/ionization time-of-flight mass spectrometry, and peptide mass fingerprinting. The DEAE-Sepharose column fractionation acts to partition soluble proteins from cell extracts. Similarly, a SP-Sepharose column can fractionate soluble proteins and increase the number of detectable gel spots. Lastly, fractionation of cell extract with a phenyl Sepharose column can also result in an increase in the number of detectable 2D gel spots. This chapter describes an easy, inexpensive way to fractionate soluble proteins and a way to better profile proteomes.
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- 2017
- Full Text
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22. The Results of the PRISM (Prediction of Rejection In Sensitized patient blood saMples) Trial with a Novel Bioassay
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Minnie M. Sarwal, Andrew Schroeder, Parhom Towfighi, Juliane Liberto, Crystal Koh, Tara K. Sigdel, Szu-Chuan Hseish, and Flavio Vincenti
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03 medical and health sciences ,Transplantation ,0302 clinical medicine ,Optics ,business.industry ,Medicine ,Bioassay ,030211 gastroenterology & hepatology ,Prism ,030230 surgery ,business - Published
- 2018
- Full Text
- View/download PDF
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