97 results on '"Partha K. Chandra"'
Search Results
2. Untargeted Metabolomic Profiling of Extracellular Vesicles Isolated from Human Seminal Plasma
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Manesh Kumar Panner Selvam, Partha K. Chandra, Zahra Bakhtiary, David W. Busija, and Suresh C. Sikka
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seminal extracellular vesicles ,metabolomics ,metabolites ,bioinformatics ,semen ,Microbiology ,QR1-502 - Abstract
Seminal extracellular vesicles (SemEVs) are repositories of biomolecules, including metabolites involved in the regulation of sperm function. The correlation between the metabolite profile of SemEVs and semen parameters, along with their role in regulating sperm function, is an unexplored area. This preliminary study evaluated the metabolomic content of SemEVs. Semen samples were obtained from 18 healthy men, and SemEVs were extracted from seminal plasma using the size exclusion chromatography qEV Gen 2–35 nm column coupled with an automatic fraction collector. The physical characterization of SemEVs was carried out with the ZetaView PMX-430-Z QUATT laser system. EV protein markers were detected using Western blot. In addition, these SemEVs were used for metabolomic profiling and functional bioinformatic analysis. The mean concentration of isolated SemEVs was 1.7 ± 1.1 × 1011/mL of seminal plasma, whereas SemEVs size and zeta potential were 129.5 ± 5.5 nm and −40.03 ± 3.99 mV, respectively. Western blot analysis confirmed the presence of EV specific markers such as CD81, ALIX, and TSG101. A total of 107 metabolites were identified using this untargeted metabolomic approach in SemEVs. Bioinformatics analysis further revealed that metabolites associated with tyrosine metabolism were highly enriched in these SemEVs. Ingenuity Pathway Analysis (IPA) also indicated that these metabolites present in SemEVs were involved in the regulation of the free radical scavenging pathway. Furthermore, our metabolomic results suggest that these SemEV-associated metabolites may play a pivotal role in the maintenance of seminal plasma redox homeostasis.
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- 2024
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3. Circulating Plasma Exosomal Proteins of Either SHIV-Infected Rhesus Macaque or HIV-Infected Patient Indicates a Link to Neuropathogenesis
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Partha K. Chandra, Stephen E. Braun, Sudipa Maity, Jorge A. Castorena-Gonzalez, Hogyoung Kim, Jeffrey G. Shaffer, Sinisa Cikic, Ibolya Rutkai, Jia Fan, Jessie J. Guidry, David K. Worthylake, Chenzhong Li, Asim B. Abdel-Mageed, and David W. Busija
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HIV-1 ,SHIV ,circulating plasma exosomes ,neuropathogenesis ,rhesus macaque ,proteomic analysis ,Microbiology ,QR1-502 - Abstract
Despite the suppression of human immunodeficiency virus (HIV) replication by combined antiretroviral therapy (cART), 50–60% of HIV-infected patients suffer from HIV-associated neurocognitive disorders (HAND). Studies are uncovering the role of extracellular vesicles (EVs), especially exosomes, in the central nervous system (CNS) due to HIV infection. We investigated links among circulating plasma exosomal (crExo) proteins and neuropathogenesis in simian/human immunodeficiency virus (SHIV)-infected rhesus macaques (RM) and HIV-infected and cART treated patients (Patient-Exo). Isolated EVs from SHIV-infected (SHIV-Exo) and uninfected (CTL-Exo) RM were predominantly exosomes (particle size < 150 nm). Proteomic analysis quantified 5654 proteins, of which 236 proteins (~4%) were significantly, differentially expressed (DE) between SHIV-/CTL-Exo. Interestingly, different CNS cell specific markers were abundantly expressed in crExo. Proteins involved in latent viral reactivation, neuroinflammation, neuropathology-associated interactive as well as signaling molecules were expressed at significantly higher levels in SHIV-Exo than CTL-Exo. However, proteins involved in mitochondrial biogenesis, ATP production, autophagy, endocytosis, exocytosis, and cytoskeleton organization were significantly less expressed in SHIV-Exo than CTL-Exo. Interestingly, proteins involved in oxidative stress, mitochondrial biogenesis, ATP production, and autophagy were significantly downregulated in primary human brain microvascular endothelial cells exposed with HIV+/cART+ Patient-Exo. We showed that Patient-Exo significantly increased blood–brain barrier permeability, possibly due to loss of platelet endothelial cell adhesion molecule-1 protein and actin cytoskeleton structure. Our novel findings suggest that circulating exosomal proteins expressed CNS cell markers—possibly associated with viral reactivation and neuropathogenesis—that may elucidate the etiology of HAND.
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- 2023
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4. Pre-Exposure to Stress-Inducing Agents Increase the Anticancer Efficacy of Focused Ultrasound against Aggressive Prostate Cancer Cells
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Hakm Y. Murad, Partha K. Chandra, Charles A. Kelly, Namrata Khurana, Heng Yu, Emma P. Bortz, Shirley N. Hong, Debasis Mondal, and Damir B. Khismatullin
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prostate cancer ,aggressive phenotype ,oxidative stress ,ER-stress ,focused ultrasound ,CDDO-me ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Despite the initial success in treatment of localized prostate cancer (PCa) using surgery, radiation or hormonal therapy, recurrence of aggressive tumors dictates morbidity and mortality. Focused ultrasound (FUS) is being tested as a targeted, noninvasive approach to eliminate the localized PCa foci, and strategies to enhance the anticancer potential of FUS have a high translational value. Since aggressive cancer cells utilize oxidative stress (Ox-stress) and endoplasmic reticulum stress (ER-stress) pathways for their survival and recurrence, we hypothesized that pre-treatment with drugs that disrupt stress-signaling pathways in tumor cells may increase FUS efficacy. Using four different PCa cell lines, i.e., LNCaP, C4-2B, 22Rv1 and DU145, we tested the in vitro effects of FUS, alone and in combination with two clinically tested drugs that increase Ox-stress (i.e., CDDO-me) or ER-stress (i.e., nelfinavir). As compared to standalone FUS, significant (p < 0.05) suppressions in both survival and recurrence of PCa cells were observed following pre-sensitization with low-dose CDDO-me (100 nM) and/or nelfinavir (2 µM). In drug pre-sensitized cells, significant anticancer effects were evident at a FUS intensity of as low as 0.7 kW/cm2. This combined mechanochemical disruption (MCD) approach decreased cell proliferation, migration and clonogenic ability and increased apoptosis/necrosis and reactive oxygen species (ROS) production. Furthermore, although activated in cells that survived standalone FUS, pre-sensitization with CDDO-me and/or nelfinavir suppressed both total and activated (phosphorylated) NF-κB and Akt protein levels. Thus, a combined MCD therapy may be a safe and effective approach towards the targeted elimination of aggressive PCa cells.
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- 2022
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5. Bardoxolone-Methyl (CDDO-Me) Suppresses Androgen Receptor and Its Splice-Variant AR-V7 and Enhances Efficacy of Enzalutamide in Prostate Cancer Cells
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Namrata Khurana, Partha K. Chandra, Hogyoung Kim, Asim B. Abdel-Mageed, Debasis Mondal, and Suresh C. Sikka
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bardoxolone methyl ,prostate cancer ,castration-resistant prostate cancer ,androgen receptor (ar), ar-v7 ,anti-androgen ,enzalutamide ,androgen deprivation therapy ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Androgen receptor (AR) signaling is fundamental to prostate cancer (PC) progression, and hence, androgen deprivation therapy (ADT) remains a mainstay of treatment. However, augmented AR signaling via both full length AR (AR-FL) and constitutively active AR splice variants, especially AR-V7, is associated with the recurrence of castration resistant prostate cancer (CRPC). Oxidative stress also plays a crucial role in anti-androgen resistance and CRPC outgrowth. We examined whether a triterpenoid antioxidant drug, Bardoxolone-methyl, known as CDDO-Me or RTA 402, can decrease AR-FL and AR-V7 expression in PC cells. Nanomolar (nM) concentrations of CDDO-Me rapidly downregulated AR-FL in LNCaP and C4-2B cells, and both AR-FL and AR-V7 in CWR22Rv1 (22Rv1) cells. The AR-suppressive effect of CDDO-Me was evident at both the mRNA and protein levels. Mechanistically, acute exposure (2 h) to CDDO-Me increased and long-term exposure (24 h) decreased reactive oxygen species (ROS) levels in cells. This was concomitant with an increase in the anti-oxidant transcription factor, Nrf2. The anti-oxidant N-acetyl cysteine (NAC) could overcome this AR-suppressive effect of CDDO-Me. Co-exposure of PC cells to CDDO-Me enhanced the efficacy of a clinically approved anti-androgen, enzalutamide (ENZ), as evident by decreased cell-viability along with migration and colony forming ability of PC cells. Thus, CDDO-Me which is in several late-stage clinical trials, may be used as an adjunct to ADT in PC patients.
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- 2020
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6. The Membrane-Active Phytopeptide Cycloviolacin O2 Simultaneously Targets HIV-1-infected Cells and Infectious Viral Particles to Potentiate the Efficacy of Antiretroviral Drugs
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Samantha L. Gerlach, Partha K. Chandra, Upal Roy, Sunithi Gunasekera, Ulf Göransson, William C. Wimley, Stephen E. Braun, and Debasis Mondal
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cyclotides ,cycloviolacin O2 ,CyO2 ,HIV-1 ,protease inhibitors ,fusion inhibitors ,antiretroviral drugs ,Medicine - Abstract
Background: Novel strategies to increase the efficacy of antiretroviral (ARV) drugs will be of crucial importance. We hypothesize that membranes of HIV-1-infected cells and enveloped HIV-1 particles may be preferentially targeted by the phytopeptide, cycloviolacin O2 (CyO2) to significantly enhance ARV efficacy. Methods: Physiologically safe concentrations of CyO2 were determined via red blood cell (RBC) hemolysis. SYTOX-green dye-uptake and radiolabeled saquinavir (3H-SQV) uptake assays were used to measure pore-formation and drug uptake, respectively. ELISA, reporter assays and ultracentrifugation were conducted to analyze the antiviral efficacy of HIV-1 protease and fusion inhibitors alone and co-exposed to CyO2. Results: CyO2 concentrations below 0.5 μM did not show substantial hemolytic activity, yet these concentrations enabled rapid pore-formation in HIV-infected T-cells and monocytes and increased drug uptake. ELISA for HIV-1 p24 indicated that CyO2 enhances the antiviral efficacy of both SQV and nelfinavir. CyO2 (< 0.5 μM) alone decreases HIV-1 p24 production, but it did not affect the transcription regulatory function of the HIV-1 long terminal repeat (LTR). Ultracentrifugation studies clearly showed that CyO2 exposure disrupted viral integrity and decreased the p24 content of viral particles. Furthermore, direct HIV-1 inactivation by CyO2 enhanced the efficacy of enfuvirtide. Conclusions: The membrane-active properties of CyO2 may help suppress viral load and augment antiretroviral drug efficacy.
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- 2019
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7. Drug Trafficking Routes and Hepatitis B in Injection Drug Users, Manipur, India
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Sibnarayan Datta, Arup Banerjee, Partha K. Chandra, Pradip K. Mahapatra, Shekhar Chakrabarti, and Runu Chakravarty
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Hepatitis B virus ,injection drug use ,occult hepatitis B infection ,genotype C ,Manipur ,India ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
Prevalence of hepatitis B genotype C in injection drug users in the northeastern Indian state of Manipur, neighboring the "Golden Triangle," correlates well with overland drug-trafficking routes, the injection drug use epidemic, and the spread of HIV. Further spread to other regions of India through mobile populations is possible.
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- 2006
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8. Hepatitis C Virus Infection Induces Autophagy as a Prosurvival Mechanism to Alleviate Hepatic ER-Stress Response
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Srikanta Dash, Srinivas Chava, Yucel Aydin, Partha K. Chandra, Pauline Ferraris, Weina Chen, Luis A. Balart, Tong Wu, and Robert F. Garry
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Hepatitis C virus (HCV) ,Endoplasmic reticulum stress (ER-stress) ,Unfolded protein response (UPR) ,Autophagy ,Chaperon-mediated autophagy (CMA) ,Interferon (IFN) ,Interferon-alpha receptor-1 (IFNAR1) ,chronic liver disease (CLD) ,Hepatocellular carcinoma (HCC) ,Microbiology ,QR1-502 - Abstract
Hepatitis C virus (HCV) infection frequently leads to chronic liver disease, liver cirrhosis and hepatocellular carcinoma (HCC). The molecular mechanisms by which HCV infection leads to chronic liver disease and HCC are not well understood. The infection cycle of HCV is initiated by the attachment and entry of virus particles into a hepatocyte. Replication of the HCV genome inside hepatocytes leads to accumulation of large amounts of viral proteins and RNA replication intermediates in the endoplasmic reticulum (ER), resulting in production of thousands of new virus particles. HCV-infected hepatocytes mount a substantial stress response. How the infected hepatocyte integrates the viral-induced stress response with chronic infection is unknown. The unfolded protein response (UPR), an ER-associated cellular transcriptional response, is activated in HCV infected hepatocytes. Over the past several years, research performed by a number of laboratories, including ours, has shown that HCV induced UPR robustly activates autophagy to sustain viral replication in the infected hepatocyte. Induction of the cellular autophagy response is required to improve survival of infected cells by inhibition of cellular apoptosis. The autophagy response also inhibits the cellular innate antiviral program that usually inhibits HCV replication. In this review, we discuss the physiological implications of the HCV-induced chronic ER-stress response in the liver disease progression.
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- 2016
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9. Correction: SH2 Modified STAT1 Induces HLA-I Expression and Improves IFN-γ Signaling in IFN-α Resistant HCV Replicon Cells.
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Bret Poat, Sidhartha Hazari, Partha K. Chandra, Feyza Gunduz, Luis A. Balart, Xavier Alvarez, Yong Zhang, Michael J. Holtzman, and Srikanta Dash
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Medicine ,Science - Published
- 2010
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10. Transcriptome analysis reveals sexual disparities in gene expression in rat brain microvessels
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Sinisa Cikic, David W. Busija, Prasad V. G. Katakam, Partha K. Chandra, Ibolya Rutkai, Erik K. Flemington, Jessie J Guidry, and Melody Baddoo
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Male ,Proteomics ,RNA-Seq ,Computational biology ,Biology ,Rats, Sprague-Dawley ,Transcriptome ,03 medical and health sciences ,0302 clinical medicine ,Gene expression ,Animals ,030304 developmental biology ,Sex Characteristics ,0303 health sciences ,Gene Expression Profiling ,Brain ,Original Articles ,Rat brain ,Rats ,Sexual dimorphism ,Gene Expression Regulation ,Neurology ,sexual dimorphism ,Microvessels ,gene expression ,Female ,Neurology (clinical) ,Cerebral microvessels ,Cardiology and Cardiovascular Medicine ,030217 neurology & neurosurgery ,Function (biology) - Abstract
Sex is an important determinant of brain microvessels (MVs) function and susceptibility to cerebrovascular and neurological diseases, but underlying mechanisms are unclear. Using high throughput RNA sequencing analysis, we examined differentially expressed (DE) genes in brain MVs from young, male, and female rats. Bioinformatics analysis of the 23,786 identified genes indicates that 298 (1.2%) genes were DE using False Discovery Rate criteria (FDR; p
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- 2021
11. Circulating Exosomal Proteins are linked to Neuropathogenesis in SIV‐infected Rhesus Macaque: A Proteomic Approach
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Partha K. Chandra, Stephen E. Braun, Melody C. Baddoo, Hogyoung Kim, Jorge A. Castorena‐Gonzalez, Sinisa Cikic, Ibolya Rutkai, Jessie J. Guidry, David K. Worthylake, Erik K. Flemington, Asim B. Abdel‐Mageed, and David W. Busija
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Genetics ,Molecular Biology ,Biochemistry ,Biotechnology - Published
- 2022
12. Effects of Aging on Proteome Dynamics in Mice Brain Microvessels: ROS Scavengers, mRNA/Protein Stability, Glycolytic Enzymes, Mitochondrial Complexes, and Basement Membrane Components
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Partha K. Chandra, Sinisa Cikic, Ibolya Rutkai, Jessie J. Guidry, Prasad V. G. Katakam, Ricardo Mostany, and David W. Busija
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Genetics ,Molecular Biology ,Biochemistry ,Biotechnology - Published
- 2022
13. Chronic imaging of mitochondria in the murine cerebral vasculature using in vivo two-photon microscopy
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Sinisa Cikic, Wesley R. Evans, Tomas Salter‐Cid, Partha K. Chandra, David W. Busija, Ibolya Rutkai, Ricardo Mostany, Nikita Bess, and Prasad V. G. Katakam
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Male ,Cell type ,Endothelium ,Physiology ,Mice, Transgenic ,Mitochondrion ,Mice ,03 medical and health sciences ,Cerebral circulation ,0302 clinical medicine ,Two-photon excitation microscopy ,In vivo ,Physiology (medical) ,medicine ,Animals ,Cells, Cultured ,030304 developmental biology ,0303 health sciences ,Chemistry ,Endothelial Cells ,Mitochondria ,Cell biology ,Endothelial stem cell ,Microscopy, Fluorescence, Multiphoton ,medicine.anatomical_structure ,Cerebrovascular Circulation ,Innovative Methodology ,Female ,Endothelium, Vascular ,Cardiology and Cardiovascular Medicine ,030217 neurology & neurosurgery ,Preclinical imaging - Abstract
Mitochondria are important regulators of cerebral vascular function in health and disease, but progress in understanding their roles has been hindered by methodological limitations. We report the first in vivo imaging of mitochondria specific to the cerebral endothelium in real time in the same mouse for extended periods. Mice expressing Dendra2 fluorescent protein in mitochondria (mito-Dendra2) in the cerebral vascular endothelium were generated by breeding PhAM-floxed and Tie2-Cre mice. We used mito-Dendra2 expression, cranial window implantation, and two-photon microscopy to visualize mitochondria in the cerebral vascular endothelium of mice. Immunohistochemistry and mitochondrial staining were used to confirm the localization of the mitochondrial signal to endothelial cells and the specificity of mito-Dendra2 to mitochondria. Mito-Dendra2 and Rhodamine B-conjugated dextran allowed simultaneous determinations of mitochondrial density, vessel diameters, area, and mitochondria-to-vessel ratio in vivo, repeatedly, in the same mouse. Endothelial expression of mito-Dendra2 was confirmed in vitro on brain slices and aorta. In addition, we observed an overlapping mito-Dendra2 and Chromeo mitochondrial staining of cultured brain microvascular endothelial cells. Repeated imaging of the same location in the cerebral microcirculation in the same mouse demonstrated stability of mito-Dendra2. While the overall mitochondrial signal was stable over time, mitochondria within the same endothelial cell were mobile. In conclusion, our results indicate that the mito-Dendra2 signal and vascular parameters are suitable for real-time and longitudinal examination of mitochondria in vivo in the cerebral vasculature of mice. NEW & NOTEWORTHY We introduce an innovative in vivo approach to study mitochondria in the cerebral circulation in their physiological environment by demonstrating the feasibility of long-term imaging and three-dimensional reconstruction. We postulate that the appropriate combination of Cre/Lox system and two-photon microscopy will contribute to a better understanding of the role of mitochondria in not only endothelium but also the different cell types of the cerebral circulation.
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- 2020
14. Effects of aging on protein expression in mice brain microvessels: ROS scavengers, mRNA/protein stability, glycolytic enzymes, mitochondrial complexes, and basement membrane components
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Partha K. Chandra, Ricardo Mostany, Sinisa Cikic, David W. Busija, Jessie J Guidry, Prasad V. G. Katakam, and Ibolya Rutkai
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Male ,Proteomics ,Aging ,medicine.medical_specialty ,RNA Stability ,Perlecan ,medicine.disease_cause ,Basement Membrane ,Mice ,Laminin ,Internal medicine ,medicine ,Animals ,Glycolysis ,RNA, Messenger ,Messenger RNA ,biology ,Chemistry ,Protein Stability ,Brain ,Mitochondria ,Endocrinology ,Anaerobic glycolysis ,Microvessels ,biology.protein ,Female ,Geriatrics and Gerontology ,Thioredoxin ,Reactive Oxygen Species ,Oxidative stress - Abstract
Differentially expressed (DE) proteins in the cortical microvessels (MVs) of young, middle-aged, and old male and female mice were evaluated using discovery-based proteomics analysis (> 4,200 quantified proteins/group). Most DE proteins (> 90%) showed no significant differences between the sexes; however, some significant DE proteins showing sexual differences in MVs decreased from young (8.3%), to middle-aged (3.7%), to old (0.5%) mice. Therefore, we combined male and female data for age-dependent comparisons but noted sex differences for examination. Key proteins involved in the oxidative stress response, mRNA or protein stability, basement membrane (BM) composition, aerobic glycolysis, and mitochondrial function were significantly altered with aging. Relative abundance of superoxide dismutase-1/-2, catalase and thioredoxin were reduced with aging. Proteins participating in either mRNA degradation or pre-mRNA splicing were significantly increased in old mice MVs, whereas protein stabilizing proteins decreased. Glycolytic proteins were not affected in middle age, but the relative abundance of these proteins decreased in MVs of old mice. Although most of the 41 examined proteins composing mitochondrial complexes I–V were reduced in old mice, six of these proteins showed a significant reduction in middle-aged mice, but the relative abundance increased in fourteen proteins. Nidogen, collagen, and laminin family members as well as perlecan showed differing patterns during aging, indicating BM reorganization starting in middle age. We suggest that increased oxidative stress during aging leads to adverse protein profile changes of brain cortical MVs that affect mRNA/protein stability, BM integrity, and ATP synthesis capacity.
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- 2021
15. Latent HIV‐1 Exosomes Induce Mitochondrial Hyperfusion due to Loss of Phosphorylated Dynamin‐related Protein 1 in Brain Endothelium
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Sinisa Cikic, Partha K. Chandra, Ibolya Rutkai, Debasis Mondal, Hogyoung Kim, David W. Busija, Asim B. Abdel-Mageed, and Stephen E. Braun
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DNM1L ,Brain endothelium ,Chemistry ,Genetics ,Human immunodeficiency virus (HIV) ,medicine ,Phosphorylation ,medicine.disease_cause ,Molecular Biology ,Biochemistry ,Microvesicles ,Biotechnology ,Cell biology - Published
- 2021
16. Multiomics Uncover Sexual Disparities in the Expression of Genes and Proteins in Rat Cerebral Microvessels
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Ibolya Rutkai, Sinisa Cikic, Prasad V. G. Katakam, Jessie J Guidry, Melody Baddoo, Erik K. Flemington, David W. Busija, and Partha K. Chandra
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Expression (architecture) ,Genetics ,Biology ,Molecular Biology ,Biochemistry ,Gene ,Biotechnology ,Cell biology - Published
- 2021
17. Sex Differences in Gene‐Expression between Brain Arteries and Cortical Microvessels in Mice revealed by RNA‐Sequencing
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Ibolya Rutkai, David W. Busija, Prasad V. G. Katakam, Melody Baddoo, Erik K. Flemington, Sinisa Cikic, and Partha K. Chandra
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Gene expression ,Genetics ,RNA ,Biology ,Molecular Biology ,Biochemistry ,Molecular biology ,Biotechnology ,Brain arteries - Published
- 2021
18. sj-pdf-5-jcb-10.1177_0271678X21999553 - Supplemental material for Transcriptome analysis reveals sexual disparities in gene expression in rat brain microvessels
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Partha K Chandra, Sinisa Cikic, Baddoo, Melody C, Rutkai, Ibolya, Guidry, Jessie J, Flemington, Erik K, Katakam, Prasad VG, and Busija, David W
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110320 Radiology and Organ Imaging ,FOS: Clinical medicine ,FOS: Biological sciences ,Medicine ,Cell Biology ,110305 Emergency Medicine ,110306 Endocrinology ,Biochemistry ,69999 Biological Sciences not elsewhere classified ,110904 Neurology and Neuromuscular Diseases ,Neuroscience - Abstract
Supplemental material, sj-pdf-5-jcb-10.1177_0271678X21999553 for Transcriptome analysis reveals sexual disparities in gene expression in rat brain microvessels by Partha K Chandra, Sinisa Cikic, Melody C Baddoo, Ibolya Rutkai, Jessie J Guidry, Erik K Flemington, Prasad VG Katakam and David W Busija in Journal of Cerebral Blood Flow & Metabolism
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- 2021
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19. sj-pdf-2-jcb-10.1177_0271678X21999553 - Supplemental material for Transcriptome analysis reveals sexual disparities in gene expression in rat brain microvessels
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Partha K Chandra, Sinisa Cikic, Baddoo, Melody C, Rutkai, Ibolya, Guidry, Jessie J, Flemington, Erik K, Katakam, Prasad VG, and Busija, David W
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110320 Radiology and Organ Imaging ,FOS: Clinical medicine ,FOS: Biological sciences ,Medicine ,Cell Biology ,110305 Emergency Medicine ,110306 Endocrinology ,Biochemistry ,69999 Biological Sciences not elsewhere classified ,110904 Neurology and Neuromuscular Diseases ,Neuroscience - Abstract
Supplemental material, sj-pdf-2-jcb-10.1177_0271678X21999553 for Transcriptome analysis reveals sexual disparities in gene expression in rat brain microvessels by Partha K Chandra, Sinisa Cikic, Melody C Baddoo, Ibolya Rutkai, Jessie J Guidry, Erik K Flemington, Prasad VG Katakam and David W Busija in Journal of Cerebral Blood Flow & Metabolism
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- 2021
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20. sj-pdf-3-jcb-10.1177_0271678X21999553 - Supplemental material for Transcriptome analysis reveals sexual disparities in gene expression in rat brain microvessels
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Partha K Chandra, Sinisa Cikic, Baddoo, Melody C, Rutkai, Ibolya, Guidry, Jessie J, Flemington, Erik K, Katakam, Prasad VG, and Busija, David W
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110320 Radiology and Organ Imaging ,FOS: Clinical medicine ,FOS: Biological sciences ,Medicine ,Cell Biology ,110305 Emergency Medicine ,110306 Endocrinology ,Biochemistry ,69999 Biological Sciences not elsewhere classified ,110904 Neurology and Neuromuscular Diseases ,Neuroscience - Abstract
Supplemental material, sj-pdf-3-jcb-10.1177_0271678X21999553 for Transcriptome analysis reveals sexual disparities in gene expression in rat brain microvessels by Partha K Chandra, Sinisa Cikic, Melody C Baddoo, Ibolya Rutkai, Jessie J Guidry, Erik K Flemington, Prasad VG Katakam and David W Busija in Journal of Cerebral Blood Flow & Metabolism
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- 2021
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21. sj-pdf-1-jcb-10.1177_0271678X21999553 - Supplemental material for Transcriptome analysis reveals sexual disparities in gene expression in rat brain microvessels
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Partha K Chandra, Sinisa Cikic, Baddoo, Melody C, Rutkai, Ibolya, Guidry, Jessie J, Flemington, Erik K, Katakam, Prasad VG, and Busija, David W
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110320 Radiology and Organ Imaging ,FOS: Clinical medicine ,FOS: Biological sciences ,Medicine ,Cell Biology ,110305 Emergency Medicine ,110306 Endocrinology ,Biochemistry ,69999 Biological Sciences not elsewhere classified ,110904 Neurology and Neuromuscular Diseases ,Neuroscience - Abstract
Supplemental material, sj-pdf-1-jcb-10.1177_0271678X21999553 for Transcriptome analysis reveals sexual disparities in gene expression in rat brain microvessels by Partha K Chandra, Sinisa Cikic, Melody C Baddoo, Ibolya Rutkai, Jessie J Guidry, Erik K Flemington, Prasad VG Katakam and David W Busija in Journal of Cerebral Blood Flow & Metabolism
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- 2021
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22. sj-pdf-4-jcb-10.1177_0271678X21999553 - Supplemental material for Transcriptome analysis reveals sexual disparities in gene expression in rat brain microvessels
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Partha K Chandra, Sinisa Cikic, Baddoo, Melody C, Rutkai, Ibolya, Guidry, Jessie J, Flemington, Erik K, Katakam, Prasad VG, and Busija, David W
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110320 Radiology and Organ Imaging ,FOS: Clinical medicine ,FOS: Biological sciences ,Medicine ,Cell Biology ,110305 Emergency Medicine ,110306 Endocrinology ,Biochemistry ,69999 Biological Sciences not elsewhere classified ,110904 Neurology and Neuromuscular Diseases ,Neuroscience - Abstract
Supplemental material, sj-pdf-4-jcb-10.1177_0271678X21999553 for Transcriptome analysis reveals sexual disparities in gene expression in rat brain microvessels by Partha K Chandra, Sinisa Cikic, Melody C Baddoo, Ibolya Rutkai, Jessie J Guidry, Erik K Flemington, Prasad VG Katakam and David W Busija in Journal of Cerebral Blood Flow & Metabolism
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- 2021
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23. sj-pdf-7-jcb-10.1177_0271678X21999553 - Supplemental material for Transcriptome analysis reveals sexual disparities in gene expression in rat brain microvessels
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Partha K Chandra, Sinisa Cikic, Baddoo, Melody C, Rutkai, Ibolya, Guidry, Jessie J, Flemington, Erik K, Katakam, Prasad VG, and Busija, David W
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110320 Radiology and Organ Imaging ,FOS: Clinical medicine ,FOS: Biological sciences ,Medicine ,Cell Biology ,110305 Emergency Medicine ,110306 Endocrinology ,Biochemistry ,69999 Biological Sciences not elsewhere classified ,110904 Neurology and Neuromuscular Diseases ,Neuroscience - Abstract
Supplemental material, sj-pdf-7-jcb-10.1177_0271678X21999553 for Transcriptome analysis reveals sexual disparities in gene expression in rat brain microvessels by Partha K Chandra, Sinisa Cikic, Melody C Baddoo, Ibolya Rutkai, Jessie J Guidry, Erik K Flemington, Prasad VG Katakam and David W Busija in Journal of Cerebral Blood Flow & Metabolism
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- 2021
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24. sj-pdf-6-jcb-10.1177_0271678X21999553 - Supplemental material for Transcriptome analysis reveals sexual disparities in gene expression in rat brain microvessels
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Partha K Chandra, Sinisa Cikic, Baddoo, Melody C, Rutkai, Ibolya, Guidry, Jessie J, Flemington, Erik K, Katakam, Prasad VG, and Busija, David W
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110320 Radiology and Organ Imaging ,FOS: Clinical medicine ,FOS: Biological sciences ,Medicine ,Cell Biology ,110305 Emergency Medicine ,110306 Endocrinology ,Biochemistry ,69999 Biological Sciences not elsewhere classified ,110904 Neurology and Neuromuscular Diseases ,Neuroscience - Abstract
Supplemental material, sj-pdf-6-jcb-10.1177_0271678X21999553 for Transcriptome analysis reveals sexual disparities in gene expression in rat brain microvessels by Partha K Chandra, Sinisa Cikic, Melody C Baddoo, Ibolya Rutkai, Jessie J Guidry, Erik K Flemington, Prasad VG Katakam and David W Busija in Journal of Cerebral Blood Flow & Metabolism
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- 2021
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25. Sexual differences in mitochondrial and related proteins in rat cerebral microvessels: A proteomic approach
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Prasad V. G. Katakam, Jeffrey M. Gidday, Ibolya Rutkai, David W. Busija, Sinisa Cikic, Jarrod C. Harman, Jessie J Guidry, and Partha K. Chandra
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Male ,Proteomics ,medicine.medical_specialty ,Cerebral arteries ,Mitochondrion ,Biology ,Microcirculation ,Rats, Sprague-Dawley ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,Animals ,Sexual difference ,030304 developmental biology ,0303 health sciences ,Computational Biology ,Original Articles ,Mitochondria ,Rats ,Sexual dimorphism ,Endocrinology ,Neurology ,Microvessels ,Female ,Neurology (clinical) ,Cardiology and Cardiovascular Medicine ,030217 neurology & neurosurgery ,Function (biology) - Abstract
Sex differences in mitochondrial numbers and function are present in large cerebral arteries, but it is unclear whether these differences extend to the microcirculation. We performed an assessment of mitochondria-related proteins in cerebral microvessels (MVs) isolated from young, male and female, Sprague-Dawley rats. MVs composed of arterioles, capillaries, and venules were isolated from the cerebrum and used to perform a 3 versus 3 quantitative, multiplexed proteomics experiment utilizing tandem mass tags (TMT), coupled with liquid chromatography/mass spectrometry (LC/MS). MS data and bioinformatic analyses were performed using Proteome Discoverer version 2.2 and Ingenuity Pathway Analysis. We identified a total of 1969 proteins, of which 1871 were quantified by TMT labels. Sixty-four proteins were expressed significantly ( p
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- 2020
26. List of Contributors
- Author
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Ashok K. Adya, Neelesh Agarwal, Udita Agrawal, Vasco Azevedo, Shiv Bahadur, Subhadip Banerjee, Debmalya Barh, Mausumi Bharadwaj, Anant Narayan Bhatt, Atanu Bhattacharjee, Sayan Biswas, Madhu Biyani, Manish Biyani, Elisabetta Canetta, Manoj K. Chakrabarti, Joydeb Chanda, Partha K. Chandra, Rakhi Chaturvedi, Ankit Chauhan, Sudhir Chowbina, D. Kar Chowdhuri, Madhumita Roy Chowdhury, Mukul Das, Amrita Datta, Devyani Dube, Sudhisha Dubey, Shanta Dutta, Bilikere Srinivasa Rao Dwarakanath, Premendra D. Dwivedi, Rajarshi Kumar Gaur, Preetam Ghosh, Jessica L. Gimpel, Abhik Gupta, Anuj Kumar Gupta, Madhu Gupta, UD Gupta, Ranjit K. Harwansh, Rajat Hazra, Kazi Mirajul Hoque, Showket Hussain, Pooja Jain, Anurag Jyoti, Shivali Kamal, Satyajyoti Kanjilal, Sudhir Kumar Kashyap, Chandra Kant Katiyar, Fahim Halim Khan, Zafar K. Khan, Suchit Khanna, Satyendra Mohan Paul Khurana, Aruna Kumar, Naveen Kumar, Sandeep Kumar, Vineet Kumar, Vipin Kumar, Noor A Lokman, Sunil Maherchandani, Avinash Marwal, Shet Masih, Pawan Kumar Maurya, Ravi Mehrotra, Ayushi Mishra, Nishi Mody, Debasis Mondal, Pulok K. Mukherjee, Soumen Mukherjee, Joseph J. Nalluri, Koichi Nishigaki, Nishu Nishu, Martin K Oehler, Bhakti Patel, Debasis Pore, Pravinkumar Purushothaman, K. Ravi Ram, M. Reza Khorramizadeh, Carmela Ricciardelli, Farshid Saadat, Malay Kumar Saha, Emmanuel O. Salawu, Rishi Shanker, Rajeev Sharma, Anchal Singh, Gulshan Singh, Mithilesh Singh, Neha Singh, Surinder Pal Singh, Priyanka Srivastava, Mark A. Suckow, Surajit Das, Richa Tripathi, Kailash C. Upadhyaya, Timsy Uppal, Alok Kumar Verma, Anju Verma, Ashish Swarup Verma, Megha Verma, Mudit Verma, Mukesh Verma, Poonam Verma, Subhash Chandra Verma, Vipin Verma, Suresh P. Vyas, Dinesh K. Yadav, Neelam Yadav, Koji Yamanaka, and Eugenia Ch. Yiannakopoulou
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- 2020
27. Development of mouse models for cancer research
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Partha K. Chandra, Amrita Datta, and Debasis Mondal
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- 2020
28. Bardoxolone-Methyl (CDDO-Me) Suppresses Androgen Receptor and Its Splice-Variant AR-V7 and Enhances Efficacy of Enzalutamide in Prostate Cancer Cells
- Author
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Asim B. Abdel-Mageed, Debasis Mondal, Partha K. Chandra, Suresh C. Sikka, Namrata Khurana, and Hogyoung Kim
- Subjects
0301 basic medicine ,anti-androgen ,Physiology ,Clinical Biochemistry ,Anti-Androgen ,androgen deprivation therapy ,medicine.disease_cause ,Biochemistry ,Article ,bardoxolone methyl ,Androgen deprivation therapy ,03 medical and health sciences ,Prostate cancer ,chemistry.chemical_compound ,0302 clinical medicine ,LNCaP ,medicine ,Enzalutamide ,castration-resistant prostate cancer ,Bardoxolone methyl ,Molecular Biology ,enzalutamide ,Chemistry ,lcsh:RM1-950 ,Cell Biology ,medicine.disease ,prostate cancer ,Androgen receptor ,030104 developmental biology ,lcsh:Therapeutics. Pharmacology ,030220 oncology & carcinogenesis ,androgen receptor (ar), ar-v7 ,Cancer research ,Oxidative stress - Abstract
Androgen receptor (AR) signaling is fundamental to prostate cancer (PC) progression, and hence, androgen deprivation therapy (ADT) remains a mainstay of treatment. However, augmented AR signaling via both full length AR (AR-FL) and constitutively active AR splice variants, especially AR-V7, is associated with the recurrence of castration resistant prostate cancer (CRPC). Oxidative stress also plays a crucial role in anti-androgen resistance and CRPC outgrowth. We examined whether a triterpenoid antioxidant drug, Bardoxolone-methyl, known as CDDO-Me or RTA 402, can decrease AR-FL and AR-V7 expression in PC cells. Nanomolar (nM) concentrations of CDDO-Me rapidly downregulated AR-FL in LNCaP and C4-2B cells, and both AR-FL and AR-V7 in CWR22Rv1 (22Rv1) cells. The AR-suppressive effect of CDDO-Me was evident at both the mRNA and protein levels. Mechanistically, acute exposure (2 h) to CDDO-Me increased and long-term exposure (24 h) decreased reactive oxygen species (ROS) levels in cells. This was concomitant with an increase in the anti-oxidant transcription factor, Nrf2. The anti-oxidant N-acetyl cysteine (NAC) could overcome this AR-suppressive effect of CDDO-Me. Co-exposure of PC cells to CDDO-Me enhanced the efficacy of a clinically approved anti-androgen, enzalutamide (ENZ), as evident by decreased cell-viability along with migration and colony forming ability of PC cells. Thus, CDDO-Me which is in several late-stage clinical trials, may be used as an adjunct to ADT in PC patients.
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- 2020
29. Sexual Differences in Mitochondrial Proteins in Rat Cerebral Microvessels: A Proteomic Approach
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Sinisa Cikic, Ibolya Rutkai, Jeffrey M. Gidday, David W. Busija, Partha K. Chandra, Jessie J Guidry, Prasad V. G. Katakam, and Jarrod C. Harman
- Subjects
Sexual dimorphism ,medicine.anatomical_structure ,Cerebrum ,Proteome ,Cerebral arteries ,medicine ,Biology ,Proteomics ,Tandem mass tag ,Beta oxidation ,Microcirculation ,Cell biology - Abstract
Sex differences in mitochondrial numbers and function are present in large cerebral arteries, but it is unclear whether these differences extend to the microcirculation. We performed an assessment of mitochondria-related proteins in cerebral microvessels (MVs) isolated from young, male and female, Sprague-Dawley rats. MVs composed of arterioles, capillaries, and venules were isolated from the cerebrum and used to perform a 3 vs. 3 quantitative, multiplexed proteomics experiment utilizing tandem mass tags (TMT), coupled with liquid chromatography/mass spectrometry (LC/MS). MS data and bioinformatic analyses were performed using Proteome Discoverer version 2.2 and Ingenuity Pathway Analysis. We identified a total of 1,969 proteins, of which 1,871 were quantified by TMT labels. Sixty-four proteins were expressed significantly (p < 0.05) higher in female samples compared with male samples. Females expressed more mitochondrial proteins involved in energy production, mitochondrial membrane structure, anti-oxidant enzyme proteins, and those involved in fatty acid oxidation. Conversely, males had higher expression levels of mitochondria-destructive proteins. We validated our key Proteomics results with western blotting. Our findings reveal, for the first time, the full extent of sexual dimorphism in the mitochondrial metabolic protein profiles of MVs, which may contribute to sex-dependent cerebrovascular and neurological pathologies.SynopsisEnergy-producing proteins in the cerebral microvessels (MVs) of male and female rats were examined by quantitative discovery-based proteomics to gain insight into the sex-dependent etiology of cardiovascular and neurological diseases. Females expressed more mitochondrial proteins involved in energy production, membrane structure, anti-oxidant activity, and fatty acid oxidation. In contrast, males exhibited more mitochondria-destructive proteins such as mitochondrial eating protein. Our findings reveal for the first time the sexual dimorphism of mitochondria-related proteins in cerebral MVs, which may explain functional sex-related differences in MVs during health and in the etiology of neurological pathologies of cerebrovascular origin.
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- 2019
30. A New Humanized Mouse Model Mimics Humans in Lacking α-Gal Epitopes and Secreting Anti-Gal Antibodies
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Stephen E. Braun, Fayez M. Saleh, Quan Zhu, Christian Bollensdorff, Ussama M. Abdel-Motal, Wayne A. Marasco, Reza Izadpanah, Debasis Mondal, Dong Lin, Eckhard Alt, Partha K. Chandra, and James E. Robinson
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Xenotransplantation ,medicine.medical_treatment ,Immunology ,Transplantation, Heterologous ,Biology ,Cancer Vaccines ,Epitope ,Antibodies ,Immune tolerance ,03 medical and health sciences ,Epitopes ,Mice ,0302 clinical medicine ,Immune system ,In vivo ,Novel Immunological Methods ,medicine ,Immunology and Allergy ,Animals ,Humans ,Galactosyltransferases ,Virology ,Mice, Inbred C57BL ,Disease Models, Animal ,alpha-Galactosidase ,Humanized mouse ,biology.protein ,Antibody ,Adjuvant ,030215 immunology - Abstract
Mice have been used as accepted tools for investigating complex human diseases and new drug therapies because of their shared genetics and anatomical characteristics with humans. However, the tissues in mice are different from humans in that human cells have a natural mutation in the α1,3 galactosyltransferase (α1,3GT) gene and lack α-Gal epitopes on glycosylated proteins, whereas mice and other nonprimate mammals express this epitope. The lack of α-Gal epitopes in humans results in the loss of immune tolerance to this epitope and production of abundant natural anti-Gal Abs. These natural anti-Gal Abs can be used as an adjuvant to enhance processing of vaccine epitopes to APCs. However, wild-type mice and all existing humanized mouse models cannot be used to test the efficacy of vaccines expressing α-Gal epitopes because they express α-Gal epitopes and lack anti-Gal Abs. Therefore, in an effort to bridge the gap between the mouse models and humans, we developed a new humanized mouse model that mimics humans in that it lacks α-Gal epitopes and secretes human anti-Gal Abs. The new humanized mouse model (Hu-NSG/α-Galnull) is designed to be used for preclinical evaluations of viral and tumor vaccines based on α-Gal epitopes, human-specific immune responses, xenotransplantation studies, and in vivo biomaterials evaluation. To our knowledge, our new Hu-NSG/α-Galnull is the first available humanized mouse model with such features.
- Published
- 2019
31. Multimodal actions of the phytochemical sulforaphane suppress both AR and AR-V7 in 22Rv1 cells: Advocating a potent pharmaceutical combination against castration-resistant prostate cancer
- Author
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Namrata Khurana, Partha K. Chandra, Sudha Talwar, Suresh C. Sikka, Asim B. Abdel-Mageed, Hogyoung Kim, Debasis Mondal, and Pankaj Sharma
- Subjects
Male ,0301 basic medicine ,Cancer Research ,Cell Survival ,ganetespib ,Cell ,Ganetespib ,Down-Regulation ,sulforaphane ,Pharmacology ,sensitization ,combination therapy ,Hsp90 inhibitor ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Isothiocyanates ,Cell Line, Tumor ,androgen receptor ,Nitriles ,Phenylthiohydantoin ,LNCaP ,Humans ,castration-resistant prostate cancer ,Medicine ,Viability assay ,bardoxolone-methyl ,enzalutamide ,business.industry ,Drug Synergism ,Articles ,General Medicine ,Cell cycle ,prostate cancer ,Gene Expression Regulation, Neoplastic ,Androgen receptor ,Prostatic Neoplasms, Castration-Resistant ,030104 developmental biology ,medicine.anatomical_structure ,Oncology ,chemistry ,Receptors, Androgen ,Sulfoxides ,030220 oncology & carcinogenesis ,Benzamides ,Mutation ,AR-V7 ,business ,Sulforaphane - Abstract
Prostate cancer (PCa) cells expressing full-length androgen receptor (AR-FL) are susceptible to androgen deprivation therapy (ADT). However, outgrowth of castration-resistant prostate cancer (CRPC) can occur due to the expression of constitutively active (ligand-independent) AR splice variants, particularly AR-V7. We previously demonstrated that sulforaphane (SFN), an isothiocyanate phytochemical, can decrease AR-FL levels in the PCa cell lines, LNCaP and C4-2B. Here, we examined the efficacy of SFN in targeting both AR-FL and AR-V7 in the CRPC cell line, CWR22Rv1 (22Rv1). MTT cell viability, wound-heal assay, and colony forming unit (CFU) measurements revealed that 22Rv1 cells are resistant to the anti-androgen, enzalutamide (ENZ). However, co-exposure to SFN sensitized these cells to the potent anticancer effects of ENZ (P
- Published
- 2017
32. Interferon‐alpha‐induced hepatitis C virus clearance restores p53 tumor suppressor more than direct‐acting antivirals
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Tong Wu, Anamika Tandon, Srikanta Dash, Frederic Regenstein, Animesh Chatterjee, Milad Chedid, Martin Moehlen, Luis A. Balart, Ari J. Cohen, Asha Dash, Yucel Aydin, Srinivas Chava, Partha K. Chandra, Hua Lu, and Weina Chen
- Subjects
0301 basic medicine ,medicine.medical_specialty ,Cirrhosis ,Hepatitis C virus ,Alpha interferon ,medicine.disease_cause ,03 medical and health sciences ,Liver disease ,0302 clinical medicine ,Internal medicine ,medicine ,Gene silencing ,Hepatology ,biology ,business.industry ,Original Articles ,medicine.disease ,Virology ,digestive system diseases ,3. Good health ,030104 developmental biology ,030220 oncology & carcinogenesis ,biology.protein ,Unfolded protein response ,Cancer research ,Mdm2 ,Original Article ,business - Abstract
The mechanism why hepatitis C virus (HCV) clearance by direct-acting antivirals (DAAs) does not eliminate the risk of hepatocellular carcinoma (HCC) among patients with advanced cirrhosis is unclear. Many viral and bacterial infections degrade p53 in favor of cell survival to adapt an endoplasmic reticulum (ER)-stress response. In this study, we examined whether HCV clearance by interferon-alpha or DAAs normalizes the ER stress and restores the expression of p53 tumor suppressor in cell culture. We found that HCV infection induces chronic ER stress and unfolded protein response in untransformed primary human hepatocytes. The unfolded protein response induces chaperone-mediated autophagy (CMA) in infected primary human hepatocytes and Huh-7.5 cells that results in degradation of p53 and induced expression of mouse double minute 2 (Mdm2). Inhibition of p53/Mdm2 interactions by small molecule (nutlin-3) or silencing Mdm2 did not rescue the p53 degradation, indicating that HCV infection induces degradation of p53 independent of the Mdm2 pathway. Interestingly, we found that HCV infection degrades p53 in a lysosome-dependent mechanism because lysosome-associated membrane protein 2A silencing restored p53 degradation. Our results show that HCV clearance induced by interferon-alpha-based antiviral therapies normalizes the ER-stress response and restores p53, whereas HCV clearance by DAAs does neither. We show that decreased expression of p53 in HCV-infected cirrhotic liver is associated with expression of chaperones associated with ER stress and the CMA response. Conclusion: HCV-induced ER stress and CMA promote p53 degradation in advanced liver cirrhosis. HCV clearance by DAAs does not restore p53, which provides a potential explanation for why a viral cure by DAAs does not eliminate the HCC risk among patients with advanced liver disease. We propose that resolving the ER-stress response is an alternative approach to reducing HCC risk among patients with cirrhosis after viral cure. (Hepatology Communications 2017;1:256-269).
- Published
- 2017
33. Latent‐HIV‐1 Exosome Blockade Mitophagy Flux in Human Brain Microvascular Endothelial Cells
- Author
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Hogyoung Kim, Asim B. Abdel-Mageed, Debasis Mondal, Stephen E. Braun, Ibolya Rutkai, Partha K. Chandra, and David W. Busija
- Subjects
Chemistry ,Human immunodeficiency virus (HIV) ,Human brain ,medicine.disease_cause ,Biochemistry ,Exosome ,Blockade ,Cell biology ,medicine.anatomical_structure ,Mitophagy ,Genetics ,medicine ,Molecular Biology ,Flux (metabolism) ,Biotechnology - Published
- 2019
34. The Membrane-Active Phytopeptide Cycloviolacin O2 Simultaneously Targets HIV-1-infected Cells and Infectious Viral Particles to Potentiate the Efficacy of Antiretroviral Drugs
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Stephen E. Braun, Partha K Chandra, Upal Roy, Ulf Göransson, Sunithi Gunasekera, Samantha L. Gerlach, William C. Wimley, and Debasis Mondal
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Enfuvirtide ,medicine.medical_treatment ,protease inhibitors ,lcsh:Medicine ,Pharmacology ,Article ,CyO2 ,03 medical and health sciences ,medicine ,antiretroviral drugs ,030304 developmental biology ,General Environmental Science ,0303 health sciences ,Protease ,Chemistry ,cycloviolacin O2 ,030302 biochemistry & molecular biology ,lcsh:R ,General Engineering ,virus diseases ,fusion inhibitors ,medicine.disease ,Long terminal repeat ,Hemolysis ,Red blood cell ,Nelfinavir ,medicine.anatomical_structure ,HIV-1 ,General Earth and Planetary Sciences ,cyclotides ,Saquinavir ,Viral load ,medicine.drug - Abstract
Background: Novel strategies to increase the efficacy of antiretroviral (ARV) drugs will be of crucial importance. We hypothesize that membranes of HIV-1-infected cells and enveloped HIV-1 particles may be preferentially targeted by the phytopeptide, cycloviolacin O2 (CyO2) to significantly enhance ARV efficacy. Methods: Physiologically safe concentrations of CyO2 were determined via red blood cell (RBC) hemolysis. SYTOX-green dye-uptake and radiolabeled saquinavir (3H-SQV) uptake assays were used to measure pore-formation and drug uptake, respectively. ELISA, reporter assays and ultracentrifugation were conducted to analyze the antiviral efficacy of HIV-1 protease and fusion inhibitors alone and co-exposed to CyO2. Results: CyO2 concentrations below 0.5 &mu, M did not show substantial hemolytic activity, yet these concentrations enabled rapid pore-formation in HIV-infected T-cells and monocytes and increased drug uptake. ELISA for HIV-1 p24 indicated that CyO2 enhances the antiviral efficacy of both SQV and nelfinavir. CyO2 (<, 0.5 &mu, M) alone decreases HIV-1 p24 production, but it did not affect the transcription regulatory function of the HIV-1 long terminal repeat (LTR). Ultracentrifugation studies clearly showed that CyO2 exposure disrupted viral integrity and decreased the p24 content of viral particles. Furthermore, direct HIV-1 inactivation by CyO2 enhanced the efficacy of enfuvirtide. Conclusions: The membrane-active properties of CyO2 may help suppress viral load and augment antiretroviral drug efficacy.
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- 2019
35. Sex‐Dependent Differences of Mitochondria‐Related Proteins in Rat Brain Microvessels Revealed by Mass Spectrometry
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Ibolya Rutkai, Sinisa Cikic, Prasad V. G. Katakam, Jeffrey M. Gidday, Partha K. Chandra, David W. Busija, Jessie J Guidry, and Jarrod C. Harman
- Subjects
Biochemistry ,Chemistry ,Genetics ,Mitochondrion ,Mass spectrometry ,Rat brain ,Molecular Biology ,Biotechnology - Published
- 2020
36. Transcriptome Analysis Reveals Sexual Disparities in Differential Gene Expression Signature in Rat Brain Microvessels
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Ibolya Rutkai, Partha K. Chandra, David W. Busija, Melody Baddoo, Erik K. Flemington, and Sinisa Cikic
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Transcriptome ,Gene expression ,Genetics ,Computational biology ,Biology ,Signature (topology) ,Rat brain ,Molecular Biology ,Biochemistry ,Differential (mathematics) ,Biotechnology - Published
- 2020
37. The Effects of Exosomes from Latent HIV‐1 Infected Cells on Mitophagy and Mitochondrial Fusion in Brain Microvasculature
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Ibolya Rutkai, David W. Busija, Asim B. Abdel-Mageed, Hogyoung Kim, Sinisa Cikic, and Partha K. Chandra
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mitochondrial fusion ,Mitophagy ,Genetics ,Human immunodeficiency virus (HIV) ,medicine ,Biology ,medicine.disease_cause ,Molecular Biology ,Biochemistry ,Microvesicles ,Biotechnology ,Cell biology - Published
- 2020
38. Effects of transient ischemia‐reperfusion on in vivo mitochondrial fission and fusion in the murine cerebral vasculature
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Ricardo Mostany, David W. Busija, Ibolya Rutkai, Partha K. Chandra, and Sinisa Cikic
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Cerebral circulation ,Transient ischemia ,In vivo ,Chemistry ,Genetics ,Mitochondrial fission ,Molecular Biology ,Biochemistry ,Biotechnology ,Cell biology - Published
- 2020
39. Mesenchymal stem cells are attracted to latent HIV-1-infected cells and enable virus reactivation via a non-canonical PI3K-NFκB signaling pathway
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Chengxiang Wu, Stephen E. Braun, Samantha L. Gerlach, Jian Li, Debasis Mondal, Asim B. Abdel-Mageed, Namrata Khurana, Partha K. Chandra, and Lauren T. Swientoniewski
- Subjects
0301 basic medicine ,Gene Expression Regulation, Viral ,Stromal cell ,Anti-HIV Agents ,Drug Evaluation, Preclinical ,lcsh:Medicine ,HIV Infections ,Gonanes ,Biology ,Article ,Cell Line ,03 medical and health sciences ,Phosphatidylinositol 3-Kinases ,Immune system ,Panobinostat ,Humans ,Oleanolic Acid ,lcsh:Science ,PI3K/AKT/mTOR pathway ,HIV Long Terminal Repeat ,Regulation of gene expression ,Vorinostat ,Multidisciplinary ,lcsh:R ,Mesenchymal stem cell ,NF-kappa B ,Mesenchymal Stem Cells ,3. Good health ,Cell biology ,Virus Latency ,030104 developmental biology ,Cell culture ,Culture Media, Conditioned ,HIV-1 ,lcsh:Q ,Virus Activation ,Signal transduction ,Stem cell ,Signal Transduction - Abstract
Persistence of latent HIV-1 in macrophages (MACs) and T-helper lymphocytes (THLs) remain a major therapeutic challenge. Currently available latency reversing agents (LRAs) are not very effective in vivo. Therefore, understanding of physiologic mechanisms that dictate HIV-1 latency/reactivation in reservoirs is clearly needed. Mesenchymal stromal/stem cells (MSCs) regulate the function of immune cells; however, their role in regulating virus production from latently-infected MACs & THLs is not known. We documented that exposure to MSCs or their conditioned media (MSC-CM) rapidly increased HIV-1 p24 production from the latently-infected U1 (MAC) & ACH2 (THL) cell lines. Exposure to MSCs also increased HIV-1 long terminal repeat (LTR) directed gene expression in the MAC and THL reporter lines, U937-VRX and J-Lat (9.2), respectively. MSCs exposed to CM from U1 cells (U1-CM) showed enhanced migratory ability towards latently-infected cells and retained their latency-reactivation potential. Molecular studies showed that MSC-mediated latency-reactivation was dependent upon both the phosphatidyl inositol-3-kinase (PI3K) and nuclear factor-κB (NFκB) signaling pathways. The pre-clinically tested inhibitors of PI3K (PX-866) and NFκB (CDDO-Me) suppressed MSC-mediated HIV-1 reactivation. Furthermore, coexposure to MSC-CM enhanced the latency-reactivation efficacy of the approved LRAs, vorinostat and panobinostat. Our findings on MSC-mediated latency-reactivation may provide novel strategies against persistent HIV-1 reservoirs.
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- 2018
40. Chaperone-mediated autophagy compensates for impaired macroautophagy in the cirrhotic liver to promote hepatocellular carcinoma
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Swan N. Thung, Asha Dash, Christine Lee, Srikanta Dash, Milad Chedid, Yucel Aydin, Tong Wu, Krzysztof Moroz, N. C. Nayak, Srinivas Chava, and Partha K. Chandra
- Subjects
0301 basic medicine ,Liver Cirrhosis ,medicine.medical_specialty ,Pathology ,Cirrhosis ,Carcinoma, Hepatocellular ,03 medical and health sciences ,Chaperone-mediated autophagy ,Glypicans ,Internal medicine ,Cell Line, Tumor ,Lysosomal-Associated Membrane Protein 2 ,Sequestosome-1 Protein ,Pathology Section ,Autophagy ,Medicine ,Humans ,HSP70 Heat-Shock Proteins ,chaperone-mediated autophagy ,Endoplasmic Reticulum Chaperone BiP ,Heat-Shock Proteins ,business.industry ,Liver Neoplasms ,hepatocellular carcinoma ,HCCS ,Hepatology ,medicine.disease ,Immunohistochemistry ,digestive system diseases ,Research Paper: Pathology ,3. Good health ,macroautophagy ,endoplasmic reticulum ,030104 developmental biology ,Oncology ,Apoptosis ,Hepatocellular carcinoma ,Cancer research ,business ,Lysosomes ,Molecular Chaperones - Abstract
// Srinivas Chava 1 , Christine Lee 1 , Yucel Aydin 2 , Partha K. Chandra 1 , Asha Dash 1 , Milad Chedid 1 , Swan N. Thung 3 , Krzysztof Moroz 1 , Tong Wu 1 , Nabeen C. Nayak 4 and Srikanta Dash 1 1 Department of Pathology and Laboratory Medicine, Tulane University Health Sciences Center, New Orleans, Louisiana, USA 2 Department of Medicine, Division of Gastroenterology and Hepatology, Tulane University Health Sciences Center, New Orleans, Louisiana, USA 3 The Lillian and Henry M. Stratton-Hans Popper Department of Pathology, Icahn School of Medicine at Mount Sinai, New York, New York, USA 4 Senior Consultant and Advisor, Sir Ganga Ram Hospital, Department of Pathology, New Delhi, India Correspondence to: Srikanta Dash, email: // Keywords : liver cirrhosis, hepatocellular carcinoma, macroautophagy, chaperone-mediated autophagy, endoplasmic reticulum, Pathology Section Received : January 12, 2017 Accepted : March 19, 2017 Published : March 29, 2017 Abstract Macroautophagy and chaperone-mediated autophagy (CMA) represent two major lysosomal degradation processes and often compensate for one another to facilitate cell survival. The aim of this study was to determine whether these autophagy pathways could compensate for one another to promote HCC cell survival in the cirrhotic liver. Analysis of normal liver tissue showed no expression of glypican-3 or p62 proteins, suggesting that macroautophagy is the major contributor to autophagic flux under non-pathological conditions. Of 46 cirrhotic livers with HCC examined, 39 (84%) of HCCs showed increased expression of p62, and 36 (78%) showed increased expression of glypican-3, while adjacent non-tumorous hepatocytes were negative for expression of p62 and glypican-3, similar to normal liver tissue. These results suggest that macroautophagy flux is impaired in HCC. Furthermore, more than 95% of HCCs showed altered expression of LAMP-2A compared to the surrounding non-tumorous cirrhotic liver, consistent with induction of CMA in HCC. Elevated expression of glucose-regulated protein 78 (GRP78) and heat shock cognate protein (Hsc70) were detected in 100% of HCC and adjacent non-tumorous cirrhotic livers, suggesting that unresolved ER-stress is associated with HCC risk in liver cirrhosis. Interestingly, inhibition of lysosomal degradation using hydroxychloroquine (HCQ) induced expression of the tumor suppressor p53, promoted apoptosis, and inhibited HCC growth, whereas activation of autophagy using an mTOR inhibitor (Torin1) promoted HCC growth. Results of this study suggest that induction of CMA compensates for the impairment of macroautophagy to promote HCC survival in the cirrhotic liver.
- Published
- 2017
41. HCV Infection Selectively Impairs Type I but Not Type III IFN Signaling
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Nathan Shores, Partha K. Chandra, Lili Bao, Tong Wu, Kyoung-Sub Song, Darren P. Baker, Curt H. Hagedorn, Srikanta Dash, Fatma M. Aboulnasr, William C. Wimley, Shuanghu Liu, Luis A. Balart, and Serge Y. Fuchs
- Subjects
Hepatitis C virus ,Blotting, Western ,Hepacivirus ,Biology ,medicine.disease_cause ,Virus Replication ,Antiviral Agents ,Pathology and Forensic Medicine ,03 medical and health sciences ,Interferon-gamma ,0302 clinical medicine ,Cell Line, Tumor ,medicine ,Autophagy ,Gene silencing ,Humans ,030304 developmental biology ,0303 health sciences ,Reverse Transcriptase Polymerase Chain Reaction ,Regular Article ,Endoplasmic Reticulum Stress ,Virology ,Hepatitis C ,3. Good health ,Viral replication ,Cell culture ,Interferon Type I ,Unfolded protein response ,Hepatocytes ,030211 gastroenterology & hepatology ,Signal transduction ,Interferon type I ,medicine.drug ,Signal Transduction - Abstract
A stable and persistent Hepatitis C virus (HCV) replication cell culture model was developed to examine clearance of viral replication during long-term treatment using interferon-α (IFN-α), IFN-λ, and ribavirin (RBV). Persistently HCV-infected cell culture exhibited an impaired antiviral response to IFN-α+RBV combination treatment, whereas IFN-λ treatment produced a strong and sustained antiviral response that cleared HCV replication. HCV replication in persistently infected cells induced chronic endoplasmic reticulum (ER) stress and an autophagy response that selectively down-regulated the functional IFN-α receptor-1 chain of type I, but not type II (IFN-γ) or type III (IFN-λ) IFN receptors. Down-regulation of IFN-α receptor-1 resulted in defective JAK–STAT signaling, impaired STAT phosphorylation, and impaired nuclear translocation of STAT. Furthermore, HCV replication impaired RBV uptake, because of reduced expression of the nucleoside transporters ENT1 and CNT1. Silencing ER stress and the autophagy response using chemical inhibitors or siRNA additively inhibited HCV replication and induced viral clearance by the IFN-α+RBV combination treatment. These results indicate that HCV induces ER stress and that the autophagy response selectively impairs type I (but not type III) IFN signaling, which explains why IFN-λ (but not IFN-α) produced a sustained antiviral response against HCV. The results also indicate that inhibition of ER stress and of the autophagy response overcomes IFN-α+RBV resistance mechanisms associated with HCV infection.
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- 2014
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42. Characterization of the Occult Hepatitis B Virus Variants Circulating among the Blood Donors from Eastern India
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Rajesh Panigrahi, Arup Banerjee, Prasun Bhattacharya, Runu Chakravarty, Sekhar Chakrabarti, Subhashish Chakraborty, Sibnarayan Datta, Avik Biswas, Manisha Pal, and Partha K. Chandra
- Subjects
Adult ,Hepatitis B virus ,HBsAg ,Article Subject ,Molecular Sequence Data ,India ,lcsh:Medicine ,Blood Donors ,Biology ,medicine.disease_cause ,lcsh:Technology ,General Biochemistry, Genetics and Molecular Biology ,law.invention ,law ,medicine ,Humans ,Hepatitis B Antibodies ,Promoter Regions, Genetic ,lcsh:Science ,Gene ,Phylogeny ,Polymerase chain reaction ,General Environmental Science ,Mutation ,Hepatitis B Surface Antigens ,lcsh:T ,lcsh:R ,virus diseases ,General Medicine ,Hepatitis B ,medicine.disease ,Virology ,digestive system diseases ,Reverse transcriptase ,HBeAg ,Immunology ,lcsh:Q ,Research Article - Abstract
A previous study from West Bengal documented very high rate of occult HBV infection (OBI) among the HBsAg negative blood donors. This study was aimed to characterize the OBI strains circulating among the blood donors and to estimate the risk associated with the prevailing viral variants/mutants. Blood samples from 2195 voluntary blood donors were included in the study. HBsAg, HBeAg, anti-HBc, and anti-HBs statuses of the samples were done by ELISA based detection. PCR amplification and sequencing were done to determine HBV genotypes, basal core promoter (BCP), and precore (Pre-C) mutations. Among the study samples, 268 were anti-HBc positive/HBsAg negative, among which 65 (24.25%) were HBV DNA positive. Phylogenetic analysis revealed the presence of HBV/D (87.23%), HBV/A (8.51%), and HBV/C (4.26%) (P<0.0001).HBV/D3 (65.85%) was the significantly prevalent subgenotype over HBV/D2 (26.83%) and HBV/D1 (7.31%) (P=0.0003). Considerable prevalence of differential BCP (1752C, 1753C, 1762T/1764A, 1753C+1762T/1764A, 1773C, and 1814C) and reverse transcriptase (rt) gene (rtI91L, rtL93P, rtS106C, rtR110G, rtN118T, rtS119T, rtY126H, rtG127W/R, rtC136R, and rtY158H) mutations was identified. Association of specific HBV subgenotypes with OBI was interesting and needs further study. Clinically relevant mutations were prevalent among the OBI strains which are of serious concern.
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- 2013
43. Sulforaphane increases the efficacy of anti-androgens by rapidly decreasing androgen receptor levels in prostate cancer cells
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Debasis Mondal, Partha K. Chandra, Sudha Talwar, Suresh C. Sikka, Namrata Khurana, Asim B. Abdel-Mageed, and Pankaj Sharma
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0301 basic medicine ,Male ,Cancer Research ,medicine.medical_specialty ,Bicalutamide ,medicine.drug_class ,Blotting, Western ,Apoptosis ,Enzyme-Linked Immunosorbent Assay ,Protein degradation ,Biology ,urologic and male genital diseases ,Real-Time Polymerase Chain Reaction ,Androgen deprivation therapy ,03 medical and health sciences ,chemistry.chemical_compound ,Prostate cancer ,0302 clinical medicine ,Isothiocyanates ,Internal medicine ,LNCaP ,medicine ,Biomarkers, Tumor ,Tumor Cells, Cultured ,Enzalutamide ,Anticarcinogenic Agents ,Humans ,RNA, Messenger ,Cell Proliferation ,Reverse Transcriptase Polymerase Chain Reaction ,Androgen Antagonists ,Drug Synergism ,medicine.disease ,Androgen ,Androgen receptor ,Prostatic Neoplasms, Castration-Resistant ,030104 developmental biology ,Endocrinology ,Oncology ,chemistry ,Microscopy, Fluorescence ,Receptors, Androgen ,030220 oncology & carcinogenesis ,Sulfoxides ,Cancer research ,Drug Therapy, Combination ,medicine.drug ,Signal Transduction - Abstract
Prostate cancer (PCa) cells utilize androgen for their growth. Hence, androgen deprivation therapy (ADT) using anti-androgens, e.g. bicalutamide (BIC) and enzalutamide (ENZ), is a mainstay of treatment. However, the outgrowth of castration resistant PCa (CRPC) cells remains a significant problem. These CRPC cells express androgen receptor (AR) and utilize the intratumoral androgen towards their continued growth and invasion. Sulforaphane (SFN), a naturally occurring isothiocyanate found in cruciferous vegetables, can decrease AR protein levels. In the present study, we tested the combined efficacy of anti-androgens and SFN in suppressing PCa cell growth, motility and clonogenic ability. Both androgen-dependent (LNCaP) and androgen-independent (C4-2B) cells were used to monitor the effects of BIC and ENZ, alone and in combination with SFN. Co-exposure to SFN significantly (p
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- 2016
44. Hepatitis C Virus Infection Induces Autophagy as a Prosurvival Mechanism to Alleviate Hepatic ER-Stress Response
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Pauline Ferraris, Luis A. Balart, Robert F. Garry, Yucel Aydin, Weina Chen, Srikanta Dash, Tong Wu, Srinivas Chava, and Partha K. Chandra
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0301 basic medicine ,chronic liver disease (CLD) ,Hepatitis C virus ,lcsh:QR1-502 ,Unfolded protein response (UPR) ,Review ,Hepacivirus ,Mice, SCID ,Biology ,medicine.disease_cause ,Virus Replication ,lcsh:Microbiology ,Virus ,03 medical and health sciences ,Liver disease ,Virology ,Chaperon-mediated autophagy (CMA) ,medicine ,Autophagy ,Animals ,Humans ,Endoplasmic reticulum stress (ER-stress) ,Hepatocellular carcinoma (HCC) ,Hepatitis C virus (HCV) ,Interferon (IFN) ,medicine.disease ,Endoplasmic Reticulum Stress ,Hepatitis C ,digestive system diseases ,3. Good health ,Chronic infection ,Interferon-alpha receptor-1 (IFNAR1) ,030104 developmental biology ,Infectious Diseases ,medicine.anatomical_structure ,Viral replication ,Hepatocyte ,Host-Pathogen Interactions ,Unfolded protein response ,Cancer research ,Unfolded Protein Response - Abstract
Hepatitis C virus (HCV) infection frequently leads to chronic liver disease, liver cirrhosis and hepatocellular carcinoma (HCC). The molecular mechanisms by which HCV infection leads to chronic liver disease and HCC are not well understood. The infection cycle of HCV is initiated by the attachment and entry of virus particles into a hepatocyte. Replication of the HCV genome inside hepatocytes leads to accumulation of large amounts of viral proteins and RNA replication intermediates in the endoplasmic reticulum (ER), resulting in production of thousands of new virus particles. HCV-infected hepatocytes mount a substantial stress response. How the infected hepatocyte integrates the viral-induced stress response with chronic infection is unknown. The unfolded protein response (UPR), an ER-associated cellular transcriptional response, is activated in HCV infected hepatocytes. Over the past several years, research performed by a number of laboratories, including ours, has shown that HCV induced UPR robustly activates autophagy to sustain viral replication in the infected hepatocyte. Induction of the cellular autophagy response is required to improve survival of infected cells by inhibition of cellular apoptosis. The autophagy response also inhibits the cellular innate antiviral program that usually inhibits HCV replication. In this review, we discuss the physiological implications of the HCV-induced chronic ER-stress response in the liver disease progression.
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- 2016
45. Autophagy in hepatocellular carcinomas: from pathophysiology to therapeutic response
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Srinivas Chava, Partha K. Chandra, Luis A. Balart, Yucel Aydin, Srikanta Dash, and Tong Wu
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0301 basic medicine ,Sorafenib ,Alcoholic liver disease ,microautophagy ,Cirrhosis ,hydroxychloroquine ,medicine.medical_treatment ,Review ,Targeted therapy ,chloroquine ,03 medical and health sciences ,Liver disease ,Nonalcoholic fatty liver disease ,medicine ,autophagy inhibitor ,Hepatology ,business.industry ,Autophagy ,hepatocellular carcinoma ,medicine.disease ,3. Good health ,macroautophagy ,030104 developmental biology ,Hepatocellular carcinoma ,Immunology ,sorafenib ,business ,medicine.drug - Abstract
Autophagy is an intracellular lysosomal degradation process performed by the cells to maintain energy balance. The autophagy response plays an important role in the progression of liver disease due to hepatitis virus infection, alcoholic liver disease, nonalcoholic fatty liver disease, liver cirrhosis, and hepatocellular carcinoma (HCC). An increased autophagy response also contributes to the pathogenesis of liver disease through modulation of innate and adaptive immune responses; a defective cellular autophagy response leads to the development of HCC. Recent progress in the field indicates that autophagy modulation provides a novel targeted therapy for human liver cancer. The purpose of this review is to update our understanding of how the cellular autophagy response impacts the pathophysiology of liver disease and HCC treatment.
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- 2016
46. Inhibition of Hepatitis C Virus Replication by Intracellular Delivery of Multiple siRNAs by Nanosomes
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Sruti Chandra, Anup K. Kundu, Sidhartha Hazari, Lili Bao, Tarun K. Mandal, Gilbert F. Morris, Tong Wu, Tara G Ooms, Partha K. Chandra, and Srikanta Dash
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Small interfering RNA ,Hepatitis C virus ,Hepacivirus ,Biology ,medicine.disease_cause ,Transfection ,Virus Replication ,Virus ,Fatty Acids, Monounsaturated ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,0302 clinical medicine ,Interferon ,Cell Line, Tumor ,Drug Discovery ,medicine ,Genetics ,Animals ,Replicon ,RNA, Small Interfering ,Molecular Biology ,030304 developmental biology ,Pharmacology ,0303 health sciences ,Mice, Inbred BALB C ,Ribavirin ,Virology ,Hepatitis C ,3. Good health ,Quaternary Ammonium Compounds ,Cholesterol ,chemistry ,Viral replication ,Liver ,030220 oncology & carcinogenesis ,Liposomes ,Systemic administration ,Commentary ,Nanoparticles ,RNA, Viral ,Molecular Medicine ,Original Article ,5' Untranslated Regions ,Neoplasm Transplantation ,medicine.drug - Abstract
Sustained antiviral responses of chronic hepatitis C virus (HCV) infection have improved recently by the use of direct-acting antiviral agents along with interferon (IFN)-α and ribavirin. However, the emergence of drug-resistant variants is expected to be a major problem. We describe here a novel combinatorial small interfering RNA (siRNA) nanosome-based antiviral approach to clear HCV infection. Multiple siRNAs targeted to the highly conserved 5′-untranslated region (UTR) of the HCV genome were synthesized and encapsulated into lipid nanoparticles called nanosomes. We show that siRNA can be repeatedly delivered to 100% of cells in culture using nanosomes without toxicity. Six siRNAs dramatically reduced HCV replication in both the replicon and infectious cell culture model. Repeated treatments with two siRNAs were better than a single siRNA treatment in minimizing the development of an escape mutant, resulting in rapid inhibition of viral replication. Systemic administration of combinatorial siRNA-nanosomes is well tolerated in BALB/c mice without liver injury or histological toxicity. As a proof-of-principle, we showed that systemic injections of siRNA nanosomes significantly reduced HCV replication in a liver tumor-xenotransplant mouse model of HCV. Our results indicate that systemic delivery of combinatorial siRNA nanosomes can be used to minimize the development of escape mutants and inhibition of HCV infection.
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- 2012
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47. Stability of lyophilized siRNA nanosome formulations
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Srikanta Dash, Anup K. Kundu, Partha K. Chandra, Sidhartha Hazari, Tarun K. Mandal, Grace A. Ledet, and Yashoda V Pramar
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Time Factors ,Protamine sulfate ,RNA Stability ,Pharmaceutical Science ,Alpha interferon ,Hepacivirus ,Biology ,Transfection ,Virus Replication ,Antiviral Agents ,Article ,Freeze-drying ,Cell Line, Tumor ,Drug Resistance, Viral ,medicine ,Humans ,Nanotechnology ,Potency ,Protamines ,Viability assay ,Particle Size ,RNA, Small Interfering ,Liposome ,Chromatography ,Interferon-alpha ,Genetic Therapy ,Lipids ,Molecular biology ,Protamine ,Freeze Drying ,Liposomes ,biology.protein ,Nanoparticles ,Nucleic Acid Conformation ,RNA Interference ,medicine.drug - Abstract
The goal of this study is to evaluate the stability of lyophilized siRNA formulations. The gene silencing efficiency of a stored lyophilized siRNA formulation (i.e. siRNA nanosomes) was evaluated in interferon-α (IFN-α) resistant hepatitis C virus (HCV) at different time points up to three months in an in vitro cell culture model and compared with freshly prepared siRNA formulations. Novel siRNA sequences were encapsulated within nanosize liposomes following condensation with protamine sulfate. The siRNA encapsulated nanosomes were lyophilized and stored at 4 °C for 3 months, along with liquid liposomes (L) and lyophilized liposome powder (P) which were subsequently used to prepare siRNA nanosomes (L) and siRNA nanosomes (P), respectively at different time points. Physiochemical and biological properties of all three formulations were compared at different time points up to 3 months. The particle size of the stored siRNA nanosomes (642 ± 25 nm) was considerably larger initially in comparison with the liquid liposomes (134 ± 5 nm) and lyophilized liposomes (118 ± 3). However, the particle size gradually became smaller over time (413 ± 128 nm by the third month). The zeta potential of all three formulations was initially very high (> +40 mV), followed by a gradual decrease over time. The amount of siRNA in the stored siRNA nanosomes decreased ∼18% during the 3 month storage period (1.16 ± 0.03 nmol initially on day 1 vs. 0.95 ± 0.04 nmol after 3 months). With respect to biological potency, all three formulations were significantly effective to knock-down HCV throughout the storage time. The cell viability was well-maintained throughout this period. Thus, this study indicates that the stored lyophilized siRNA formulation is as effective as the fresh preparation and that long-term storage could be a viable option to treat deadly diseases such as cancer and viral infection.
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- 2012
48. Abstract 4809: Bardoxolone-methyl suppresses both androgen receptor and its splice-variant ARv7 in prostate cancer cells to enhance the anti-cancer efficacy of enzalutamide
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Hogyoung Kim, Suresh C. Sikka, Partha K. Chandra, Namrata Khurana, Debasis Mondal, and Asim B. Abdel-Mageed
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Cancer Research ,Cancer ,medicine.disease ,Androgen receptor ,Androgen deprivation therapy ,Prostate cancer ,chemistry.chemical_compound ,Oncology ,chemistry ,MG132 ,LNCaP ,medicine ,Cancer research ,Enzalutamide ,Bardoxolone methyl - Abstract
Prostate cancer (PCa) is a leading cause of morbidity and mortality in elderly men in the United States. Despite androgen deprivation therapy (ADT), the recurrence of castration resistant prostate cancer (CRPC) remains a significant challenge. Augmented signaling via the full-length androgen receptor (AR) and the constitutively active AR splice variants, especially ARv7, is associated with ADT-resistance. Therefore, a proper understanding of augmented AR signaling and adjunct strategies to suppress both AR and ARv7 levels are critically needed. ADT-induced oxidative stress (Ox-stress) can facilitate CRPC outgrowth. We previously documented that the Ox-stress induced transcription factor, Nrf2 can suppress AR expression and AR-transactivation function in PCa cells. Recently, we also showed that the Nrf2-inducing natural compound, sulforaphane (SFN) can decrease both AR and ARv7 levels in PCa cells, and co-exposure to SFN enhanced the efficacy of anti-androgens. In this study, we examined whether a synthetic triterpenoid drug, Bardoxolone-methyl (CDDO-me), a potent enhancer of Nrf2, can similarly decrease AR and ARv7 expression. Exposure to nanomolar (nM) concentrations of CDDO-me rapidly downregulated AR levels in the androgen-dependent LNCaP cells and androgen-independent C4-2B cells. Exposure to CDDO-me also suppressed both AR and ARv7 levels in the CRPC line, CWR22Rv1. A biphasic effect of CDDO-me on reactive oxygen species (ROS) levels was observed. Pre-exposure to the antioxidant, n-acetyl cysteine (NAC) blocked the AR-suppressive effect of CDDO-me. Molecular mechanistic studies using actinomycin-D (transcription inhibitor), cycloheximide (translation inhibitor), and MG132 (proteasomal inhibitor) suggested that CDDO-me may decrease AR gene expression and increase degradation of AR and ARv7 proteins. Furthermore, exposure to CDDO-me increased proteasomal activity in PCa cells and suppressed the levels of several AR splicing factors, i.e. the heteronuclear ribonucleoproteins A1 and H1 (hnRNP-A1 and hnRNP-H1). Co-exposure to CDDO-me increased the anti-cancer efficacy of enzalutamide (ENZ) as evident by decreased cell-viability (MTT), migration (scratch-wound) and colony forming unit (CFU) assays. Therefore, adjunct treatment with low-dose CDDO-me may be an effective strategy to suppress AR and ARv7 levels and augment the efficacy of anti-androgens. Most importantly, since CDDO-me is in late-stage clinical trials for chronic kidney disease (CKD), its repositioning as a potent AR suppressive agent may be of significant translational value in PCa patients undergoing ADT. Citation Format: Namrata Khurana, Partha Chandra, Hogyoung Kim, Asim B Abdel-Mageed, Suresh Sikka, Debasis Mondal. Bardoxolone-methyl suppresses both androgen receptor and its splice-variant ARv7 in prostate cancer cells to enhance the anti-cancer efficacy of enzalutamide [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2018; 2018 Apr 14-18; Chicago, IL. Philadelphia (PA): AACR; Cancer Res 2018;78(13 Suppl):Abstract nr 4809.
- Published
- 2018
49. A new slow-releasing iron fertilizer
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Partha K. Chandra, Kunal Ghosh, and Chandrika Varadachari
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Goethite ,Chemistry ,Magnesium ,General Chemical Engineering ,Polyphosphate ,Inorganic chemistry ,chemistry.chemical_element ,General Chemistry ,engineering.material ,Phosphate ,Industrial and Manufacturing Engineering ,chemistry.chemical_compound ,Polymerization ,visual_art ,visual_art.visual_art_medium ,engineering ,Environmental Chemistry ,Fertilizer ,Solubility ,Phosphoric acid - Abstract
This paper describes the development of an environment-friendly, slow-release fertilizer of the micronutrient iron. The compound is water insoluble, and is based on a polymeric phosphate structure. Kinetics and solubility of products in the goethite [FeO(OH)]–H 3 PO 4 and [FeO(OH)]–MgO–H 3 PO 4 systems were studied at 170–300 °C. Polymerization patterns were complex. The presence of Mg as additive, improved product properties. The fertilizer was prepared by polymerization of goethite, magnesium oxide and phosphoric acid to an optimized chain length at 200 °C, followed by neutralization with magnesia. The fertilizer was soluble in citrate and DTPA. A significant increase in the yield of wheat and uptake of iron was observed at a dosage of 2 kg/ha Fe as the slow-release fertilizer.
- Published
- 2009
50. Genetic Characterization of Hepatitis B Virus in Peripheral Blood Leukocytes: Evidence for Selection and Compartmentalization of Viral Variants with the Immune Escape G145R Mutation
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Rajesh Panigrahi, Kuntal Biswas, Runu Chakravarty, Avik Biswas, Sibnarayan Datta, C K Panda, Partha K. Chandra, Sujit K. Bhattacharya, Shekhar Chakrabarti, Pradip Kumar Mahapatra, and Arup Banerjee
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Hepatitis B virus ,Mutation ,biology ,Molecular epidemiology ,Immunology ,Hepatitis B ,medicine.disease ,biology.organism_classification ,medicine.disease_cause ,Microbiology ,Virology ,Virus ,Immune system ,Orthohepadnavirus ,Hepadnaviridae ,Insect Science ,medicine ,Pathogenesis and Immunity - Abstract
The compartmentalization of viral variants in distinct host tissues is a frequent event in many viral infections. Although hepatitis B virus (HBV) classically is considered hepatotropic, it has strong lymphotropic properties as well. However, unlike other viruses, molecular evolutionary studies to characterize HBV variants in compartments other than hepatocytes or sera have not been performed. The present work attempted to characterize HBV sequences from the peripheral blood leukocytes (PBL) of a large set of subjects, using advanced molecular biology and computational methods. The results of this study revealed the exclusive compartmentalization of HBV subgenotype Ae/A2-specific sequences with a potent immune escape G145R mutation in the PBL of the majority of the subjects. Interestingly, entirely different HBV genotypes/subgenotypes (C, D, or Aa/A1) were found to predominate in the sera of the same study populations. These results suggest that subgenotype Ae/A2 is selectively archived in the PBL, and the high prevalence of G145R indicates high immune pressure and high evolutionary rates of HBV DNA in the PBL. The results are analogous to available literature on the compartmentalization of other viruses. The present work thus provides evidence in favor of the compartment-specific abundance, evolution, and emergence of the potent immune escape mutant. These findings have important implications in the field of HBV molecular epidemiology, transmission, transfusion medicine, organ transplantation, and vaccination strategies.
- Published
- 2009
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