1. Molecular Characterization of Small Ruminant Lentiviruses in Sheep and Goats: A Systematic Review.
- Author
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Gobbi, Paola, Pavone, Silvia, Orso, Massimiliano, Passamonti, Fabrizio, Righi, Cecilia, Beato, Maria Serena, Feliziani, Francesco, and Giammarioli, Monica
- Subjects
VIRAL variation ,GENETIC variation ,RUMINANTS ,LENTIVIRUSES ,SHEEP - Abstract
Simple Summary: Small ruminant lentiviruses (SRLVs) are responsible for a disease complex that includes a variety of clinical forms with a large degree of severity. The virus is highly variable, and 5 genotypes with 34 subgenotypes have been described so far. However, the application of different protocols for genotyping generated contradictory results with potential misclassification of some strains and/or identification of redundant new subgenotypes. To the best of our knowledge, no systematic review on the molecular characterization of SRLVs in sheep and goats is available. The present systematic review aims to provide an updated, in-depth, comprehensive overview of the phylogenesis of SRLVs. The systematic review was developed according to the PRISMA-P statement. Small ruminant lentiviruses (SRLVs) are responsible for chronic and progressive multisystemic clinical forms, which significantly reduce flocks' productivity and have a considerable economic impact on the small ruminant industry. Due to the increase in genetic analysis studies and the potential for misclassification of certain strains, owing to the high genetic variability of these viruses, a systematic review was deemed necessary. This review explores the types of matrices used for molecular detection and phylogenetic studies, the genomic regions selected as targets, and the software utilized for phylogenetic analysis, assessing the geographical distribution of identified genotypes and subgenotypes over time. A thorough comparison of the diagnostic approaches highlights the strengths and limitations of each method, identifying gaps that need to be addressed. Additionally, recombination events and compartmentalization are examined to provide an updated, detailed, and comprehensive overview of SRLV phylogenesis. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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