1. Identification of rare variants in PTCH2 associated with non-syndromic orofacial clefts.
- Author
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Liang X, He Q, Jiao Y, Yang H, Huang W, Liu K, Lin H, Xu L, Hou Y, Ding Y, Zhang Y, Huang H, and Zhao H
- Subjects
- Animals, Humans, Brain abnormalities, Hedgehog Proteins genetics, Signal Transduction, Cleft Lip genetics, Cleft Palate genetics, Patched-2 Receptor genetics
- Abstract
Orofacial clefts (OFCs) represent the most prevalent congenital craniofacial anomalies, significantly impacting patients' appearance, oral function, and psychological well-being. Among these, non-syndromic OFCs (NSOFCs) are the most predominant type, with the etiology attributed to a combination of genetic and environmental factors. Rare variants of key genes involved in craniofacial development-related signaling pathway are crucial in the occurrence of NSOFCs, and our recent studies have identified PTCH1, a receptor-coding gene in the Hedgehog signaling pathway, as a causative gene for NSOFCs. However, the role of PTCH2, the paralog of PTCH1, in pathogenesis of NSOFCs remains unclear. Here, we perform whole-exome sequencing to explore the genetic basis of 144 sporadic NSOFC patients. We identify five heterozygous variants of PTCH2 in four patients: p.L104P, p.A131G, p.R557H, p.I927S, and p.V978D, with the latter two co-occurring in a single patient. These variants, all proven to be rare through multiple genomic databases, with p.I927S and p.V978D being novel variants and previously unreported. Sequence alignment suggests that these affected amino acids are evolutionarily conserved across vertebrates. Utilizing predictive structural modeling tools such as AlphaFold and SWISS-MODEL, we propose that these variants may disrupt the protein's structure and function. In summary, our findings suggest that PTCH2 may be a novel candidate gene predicted to be associated with NSOFCs, thereby broadening the spectrum of causative genes implicated in the craniofacial anomalies., Competing Interests: Declaration of competing interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: [Yue Zhang reports financial support was provided by Natural Science Foundation of Xinjiang Uygur Autonomous Region. Huaxiang Zhao reports financial support was provided by National Natural Science Foundation of China. Yuxia Hou reports financial support was provided by National Natural Science Foundation of China. Wenbin Huang reports financial support was provided by Shenzhen Clinical Research Center for Oral Diseases. If there are other authors, they declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.]., (Copyright © 2024 The Author(s). Published by Elsevier B.V. All rights reserved.)
- Published
- 2024
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