19 results on '"Paul, D.S."'
Search Results
2. The Autonomous Vehicle Assistant (AVA): Emerging technology design supporting blind and visually impaired travelers in autonomous transportation
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Fink, Paul D.S., Doore, Stacy A., Lin, Xue, Maring, Matthew, Zhao, Pu, Nygaard, Aubree, Beals, Grant, Corey, Richard R., Perry, Raymond J., Freund, Katherine, Dimitrov, Velin, and Giudice, Nicholas A.
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- 2023
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3. Give us something to chauffeur it: Exploring user needs in traditional and fully autonomous ridesharing for people who are blind or visually impaired
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Fink, Paul D.S., Alsamsam, Maher, Brown, Justin R., Kindler, Henry D., and Giudice, Nicholas A.
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- 2023
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4. Skills in Assessing the Professional Literature (SAPL): A 7-year Analysis of Student EBD Performance
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Katz, Ralph V., Shamia, Hebba A., Dearing, Bianca A., Kang, Paul D.S., Li, Lin, and Chang, Andy
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- 2014
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5. Fibrin(ogen) engagement of S. aureus promotes the host antimicrobial response and suppression of microbe dissemination following peritoneal infection
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Bergmeier, W., Rowe, S.E., Conlon, B.P., Paul, D.S., Abrahams, S.R., H����k, M., Flick, M.J., Degen, J.L., Negr��n, O., Hur, W.S., Prasad, J., and Antoniak, S.
- Abstract
The blood-clotting protein fibrin(ogen) plays a critical role in host defense against invading pathogens, particularly against peritoneal infection by the Gram-positive microbe Staphylococcus aureus. Here, we tested the hypothesis that direct binding between fibrin(ogen) and S. aureus is a component of the primary host antimicrobial response mechanism and prevention of secondary microbe dissemination from the peritoneal cavity. To establish a model system, we showed that fibrinogen isolated from Fib����5 mice, which express a mutant form lacking the final 5 amino acids of the fibrinogen �� chain (termed fibrinogen����5), did not support S. aureus adherence when immobilized and clumping when in suspension. In contrast, purified wildtype fibrinogen supported robust adhesion and clumping that was largely dependent on S. aureus expression of the receptor clumping factor A (ClfA). Following peritoneal infection with S. aureus USA300, Fib����5 mice displayed worse survival compared to WT mice coupled to reduced bacterial killing within the peritoneal cavity and increased dissemination of the microbes into circulation and distant organs. The failure of acute bacterial killing, but not enhanced dissemination, was partially recapitulated by mice infected with S. aureus USA300 lacking ClfA. Fibrin polymer formation and coagulation transglutaminase Factor XIII each contributed to killing of the microbes within the peritoneal cavity, but only elimination of polymer formation enhanced systemic dissemination. Host macrophage depletion or selective elimination of the fibrin(ogen) ��2-integrin binding motif both compromised local bacterial killing and enhanced S. aureus systemic dissemination, suggesting fibrin polymer formation in and of itself was not sufficient to retain S. aureus within the peritoneal cavity. Collectively, these findings suggest that following peritoneal infection, the binding of S. aureus to stabilized fibrin matrices promotes a local, macrophage-mediated antimicrobial response essential for prevention of microbe dissemination and downstream host mortality.
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- 2022
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6. Extra Mural Venous Invasion as an Independent Prognostic Marker in Locally Advanced Rectal Cancer: Propensity Score Match Pair Analysis
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Paul, D.S., primary, Engineer, R., additional, deSouza, A., additional, Mokal, S., additional, Baheti, A., additional, Ankathi, S.K., additional, Ostwal, V., additional, Ramaswamy, A., additional, Menon, M., additional, Sastri (Chopra), S., additional, and Saklani, A., additional
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- 2020
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7. Risk thresholds for alcohol consumption: combined analysis of individual-participant data for 599 912 current drinkers in 83 prospective studies
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Wood, A.M. Kaptoge, S. Butterworth, A.S. Willeit, P. Warnakula, S. Bolton, T. Paige, E. Paul, D.S. Sweeting, M. Burgess, S. Bell, S. Astle, W. Stevens, D. Koulman, A. Selmer, R.M. Verschuren, W.M.M. Sato, S. Njølstad, I. Woodward, M. Salomaa, V. Nordestgaard, B.G. Yeap, B.B. Fletcher, A. Melander, O. Kuller, L.H. Balkau, B. Marmot, M. Koenig, W. Casiglia, E. Cooper, C. Arndt, V. Franco, O.H. Wennberg, P. Gallacher, J. de la Cámara, A.G. Völzke, H. Dahm, C.C. Dale, C.E. Bergmann, M.M. Crespo, C.J. van der Schouw, Y.T. Kaaks, R. Simons, L.A. Lagiou, P. Schoufour, J.D. Boer, J.M.A. Key, T.J. Rodriguez, B. Moreno-Iribas, C. Davidson, K.W. Taylor, J.O. Sacerdote, C. Wallace, R.B. Quiros, J.R. Tumino, R. Blazer, D.G., II Linneberg, A. Daimon, M. Panico, S. Howard, B. Skeie, G. Strandberg, T. Weiderpass, E. Psaty, B.M. Kromhout, D. Salamanca-Fernandez, E. Kiechl, S. Krumholz, H.M. Grioni, S. Palli, D. Huerta, J.M. Price, J. Sundström, J. Arriola, L. Arima, H. Travis, R.C. Panagiotakos, D.B. Karakatsani, A. Trichopoulou, A. Kühn, T. Grobbee, D.E. Barrett-Connor, E. van Schoor, N. Boeing, H. Overvad, K. Kauhanen, J. Wareham, N. Langenberg, C. Forouhi, N. Wennberg, M. Després, J.-P. Cushman, M. Cooper, J.A. Rodriguez, C.J. Sakurai, M. Shaw, J.E. Knuiman, M. Voortman, T. Meisinger, C. Tjønneland, A. Brenner, H. Palmieri, L. Dallongeville, J. Brunner, E.J. Assmann, G. Trevisan, M. Gillum, R.F. Ford, I.F. Sattar, N. Lazo, M. Thompson, S.G. Ferrari, P. Leon, D.A. Davey Smith, G. Peto, R. Jackson, R. Banks, E. Di Angelantonio, E. Danesh, J. Veikko, S. Gómez de la Cámara, A. Rimm, E.B. Dallongeville, J.-P. Gillumn, R.F. Thompson, S. Emerging Risk Factors Collaboration/EPIC-CVD/UK Biobank Alcohol Study Group
- Abstract
Background: Low-risk limits recommended for alcohol consumption vary substantially across different national guidelines. To define thresholds associated with lowest risk for all-cause mortality and cardiovascular disease, we studied individual-participant data from 599 912 current drinkers without previous cardiovascular disease. Methods: We did a combined analysis of individual-participant data from three large-scale data sources in 19 high-income countries (the Emerging Risk Factors Collaboration, EPIC-CVD, and the UK Biobank). We characterised dose–response associations and calculated hazard ratios (HRs) per 100 g per week of alcohol (12·5 units per week) across 83 prospective studies, adjusting at least for study or centre, age, sex, smoking, and diabetes. To be eligible for the analysis, participants had to have information recorded about their alcohol consumption amount and status (ie, non-drinker vs current drinker), plus age, sex, history of diabetes and smoking status, at least 1 year of follow-up after baseline, and no baseline history of cardiovascular disease. The main analyses focused on current drinkers, whose baseline alcohol consumption was categorised into eight predefined groups according to the amount in grams consumed per week. We assessed alcohol consumption in relation to all-cause mortality, total cardiovascular disease, and several cardiovascular disease subtypes. We corrected HRs for estimated long-term variability in alcohol consumption using 152 640 serial alcohol assessments obtained some years apart (median interval 5·6 years [5th–95th percentile 1·04–13·5]) from 71 011 participants from 37 studies. Findings: In the 599 912 current drinkers included in the analysis, we recorded 40 310 deaths and 39 018 incident cardiovascular disease events during 5·4 million person-years of follow-up. For all-cause mortality, we recorded a positive and curvilinear association with the level of alcohol consumption, with the minimum mortality risk around or below 100 g per week. Alcohol consumption was roughly linearly associated with a higher risk of stroke (HR per 100 g per week higher consumption 1·14, 95% CI, 1·10–1·17), coronary disease excluding myocardial infarction (1·06, 1·00–1·11), heart failure (1·09, 1·03–1·15), fatal hypertensive disease (1·24, 1·15–1·33); and fatal aortic aneurysm (1·15, 1·03–1·28). By contrast, increased alcohol consumption was log-linearly associated with a lower risk of myocardial infarction (HR 0·94, 0·91–0·97). In comparison to those who reported drinking >0–≤100 g per week, those who reported drinking >100–≤200 g per week, >200–≤350 g per week, or >350 g per week had lower life expectancy at age 40 years of approximately 6 months, 1–2 years, or 4–5 years, respectively. Interpretation: In current drinkers of alcohol in high-income countries, the threshold for lowest risk of all-cause mortality was about 100 g/week. For cardiovascular disease subtypes other than myocardial infarction, there were no clear risk thresholds below which lower alcohol consumption stopped being associated with lower disease risk. These data support limits for alcohol consumption that are lower than those recommended in most current guidelines. Funding: UK Medical Research Council, British Heart Foundation, National Institute for Health Research, European Union Framework 7, and European Research Council. © 2018 The Author(s). Published by Elsevier Ltd. This is an Open Access article under the CC BY 4.0 license.
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- 2018
8. Skills in Assessing the Professional Literature (SAPL): A 7-year Analysis of Student EBD Performance
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Lin Li, Andy Chang, Bianca A. Dearing, Paul D.S. Kang, Ralph V. Katz, and Hebba A. Shamia
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Research design ,Medical education ,business.industry ,Decision Making ,Dental Research ,Students, Dental ,Evidence-Based Dentistry ,Final examination ,Knowledge acquisition ,Thinking ,Research Design ,Humans ,Medicine ,Test performance ,Curriculum ,Educational Measurement ,Professional literature ,Advanced Placement ,business ,Education, Dental ,General Dentistry ,Evidence-based dentistry ,Program Evaluation - Abstract
Purpose The primary goal of this project was to describe the level of knowledge acquisition using detailed test performance outcomes of the EBD SAPL curriculum over its first 7-years of implementation at the NYU College of Dentistry. A secondary goal was to compare performance outcomes impact of the full 60 h base SAPL curriculum as taught to 4-year DDS students vs an abbreviated 30 h base SAPL curriculum as taught to 3-year Advanced Placement DDS students. Methods The findings for the period 2004–2010 are reported for 1647 dental students (63.6% 4-year DDS students, 36.3% 3-year Advanced Placement DDS students). The database consisted of the score earned by each student on each individual question of the SAPL course's 4 h final examination in which each student read an original research article and answered all questions on the Literature Analysis Form. Results The major findings were overall high performance by both groups of students (SAPL exam scores of 85.8 vs 83.7, respectively) as well as very similar outcomes between these two student groups on: 1) recognizing research design elements and on interpreting those design elements for clinical application, 2) detailed performance of knowledge within the specific five traditional sections of research articles, and 3) detailed performance across 18 identified research design topics. Conclusion In conclusion, both course formats appear to be highly effective for their respective student groups, but should not be interpreted as evidence favoring the shorter format given the different characteristics of the two student groups.
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- 2014
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9. Rap1 binding to the talin 1 F0 domain makes a minimal contribution to murine platelet GPIIb-IIIa activation
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Lagarrigue, F., Gingras, Alexandre R., Paul, D.S., Valadez, A.J., Cuevas, M.N., Sun, H., Lopez-Ramirez, M.A., Goult, Benjamin T., Shattil, S.J., Bergmeier, W., Ginsberg, M.H., Lagarrigue, F., Gingras, Alexandre R., Paul, D.S., Valadez, A.J., Cuevas, M.N., Sun, H., Lopez-Ramirez, M.A., Goult, Benjamin T., Shattil, S.J., Bergmeier, W., and Ginsberg, M.H.
- Abstract
Activation of platelet glycoprotein IIb-IIIa (GPIIb-IIIa; integrin aIIbb3) leads to high-affinity fibrinogen binding and platelet aggregation during hemostasis. Whereas GTP-bound Rap1 GTPase promotes talin 1 binding to the b3 cytoplasmic domain to activate platelet GPIIb-IIIa, the Rap1 effector that regulates talin association with b3 in platelets is unknown. Rap1 binding to the talin 1 F0 subdomain was proposed to forge the talin 1–Rap1 link in platelets. Here, we report a talin 1 point mutant (R35E) that significantly reduces Rap1 affinity without a significant effect on its structure or expression. Talin 1 head domain (THD) (R35E) was of similar potency to wild-type THD in activating aIIbb3 in Chinese hamster ovary cells. Coexpression with activated Rap1b increased activation, and coexpression with Rap1GAP1 reduced activation caused by transfection of wild-type THD or THD(R35E). Furthermore, platelets from Tln1R35E/R35E mice showed similar GPIIb-IIIa activation to those from wild- type littermates in response to multiple agonists. Tln1R35E/R35E platelets exhibited slightly reduced platelet aggregation in response to low doses of agonists; however, there was not a significant hemostatic defect, as judged by tail bleeding times. Thus, the Rap1–talin 1 F0 interaction has little effect on platelet GPIIb-IIIa activation and hemostasis and cannot account for the dramatic effects of loss of Rap1 activity on these platelet functions.
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- 2018
10. Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types
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Ecker, S., Chen, L., Pancaldi, V., Bagger, F.O., Fernandez, J.M., Carrillo de Santa Pau, E., Juan, D., Mann, A.L., Watt, S., Casale, F.P., Sidiropoulos, N., Rapin, N., Merkel, A., Stunnenberg, H., Stegle, O., Frontini, M., Downes, K., Pastinen, T., Kuijpers, T.W., Rico, D., Valencia, A., Beck, S., Soranzo, N., Paul, D.S., and Albers, C.A.
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Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,Molecular Biology - Abstract
Contains fulltext : 169675.pdf (Publisher’s version ) (Open Access) BACKGROUND: A healthy immune system requires immune cells that adapt rapidly to environmental challenges. This phenotypic plasticity can be mediated by transcriptional and epigenetic variability. RESULTS: We apply a novel analytical approach to measure and compare transcriptional and epigenetic variability genome-wide across CD14+CD16- monocytes, CD66b+CD16+ neutrophils, and CD4+CD45RA+ naive T cells from the same 125 healthy individuals. We discover substantially increased variability in neutrophils compared to monocytes and T cells. In neutrophils, genes with hypervariable expression are found to be implicated in key immune pathways and are associated with cellular properties and environmental exposure. We also observe increased sex-specific gene expression differences in neutrophils. Neutrophil-specific DNA methylation hypervariable sites are enriched at dynamic chromatin regions and active enhancers. CONCLUSIONS: Our data highlight the importance of transcriptional and epigenetic variability for the key role of neutrophils as the first responders to inflammatory stimuli. We provide a resource to enable further functional studies into the plasticity of immune cells, which can be accessed from: http://blueprint-dev.bioinfo.cnio.es/WP10/hypervariability .
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- 2017
11. Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome
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Cheung, W.A., Shao, X., Morin, A., Siroux, V., Kwan, T., Ge, B., Aissi, D., Chen, L, Vasquez, L., Allum, F., Guenard, F., Bouzigon, E., Simon, M.M., Boulier, E., Redensek, A., Watt, S., Datta, A., Clarke, L., Flicek, P., Mead, D., Paul, D.S., Beck, S., Bourque, G., Lathrop, M., Tchernof, A., Vohl, M.C., Demenais, F., Pin, I., Downes, K., Stunnenberg, H., Soranzo, N., Pastinen, T., Grundberg, E., Cheung, W.A., Shao, X., Morin, A., Siroux, V., Kwan, T., Ge, B., Aissi, D., Chen, L, Vasquez, L., Allum, F., Guenard, F., Bouzigon, E., Simon, M.M., Boulier, E., Redensek, A., Watt, S., Datta, A., Clarke, L., Flicek, P., Mead, D., Paul, D.S., Beck, S., Bourque, G., Lathrop, M., Tchernof, A., Vohl, M.C., Demenais, F., Pin, I., Downes, K., Stunnenberg, H., Soranzo, N., Pastinen, T., and Grundberg, E.
- Abstract
Contains fulltext : 168851.pdf (publisher's version ) (Open Access)
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- 2017
12. Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells
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Chen, L., Ge, B., Casale, F.P., Vasquez, L., Kwan, T., Garrido-Martin, D., Watt, S., Yan, Y., Kundu, K., Ecker, S., Datta, A., Richardson, D., Burden, F., Mead, D., Mann, A.L., Fernandez, J.M., Rowlston, S., Wilder, S.P., Farrow, S., Shao, X., Lambourne, J.J., Redensek, A., Albers, C.A., Amstislavskiy, V., Ashford, S., Berentsen, K., Bomba, L., Bourque, G., Bujold, D., Busche, S., Caron, M., Chen, S.H., Cheung, W., Delaneau, O., Dermitzakis, E.T., Elding, H., Colgiu, I., Bagger, F.O., Flicek, P., Habibi, E., Iotchkova, V., Janssen-Megens, E., Kim, B., Lehrach, H., Lowy, E., Mandoli, A., Matarese, F., Maurano, M.T., Morris, J.A., Pancaldi, V., Pourfarzad, F., Rehnstrom, K., Rendon, A., Risch, T., Sharifi, N., Simon, M.M., Sultan, M., Valencia, A., Walter, K., Wang, S.Y., Frontini, M., Antonarakis, S.E., Clarke, L., Yaspo, M.L., Beck, S., Guigo, R., Rico, D., Martens, J.H., Ouwehand, W.H., Kuijpers, T.W., Paul, D.S., Stunnenberg, H.G., Stegle, O., Downes, K., Pastinen, T., Soranzo, N., Chen, L., Ge, B., Casale, F.P., Vasquez, L., Kwan, T., Garrido-Martin, D., Watt, S., Yan, Y., Kundu, K., Ecker, S., Datta, A., Richardson, D., Burden, F., Mead, D., Mann, A.L., Fernandez, J.M., Rowlston, S., Wilder, S.P., Farrow, S., Shao, X., Lambourne, J.J., Redensek, A., Albers, C.A., Amstislavskiy, V., Ashford, S., Berentsen, K., Bomba, L., Bourque, G., Bujold, D., Busche, S., Caron, M., Chen, S.H., Cheung, W., Delaneau, O., Dermitzakis, E.T., Elding, H., Colgiu, I., Bagger, F.O., Flicek, P., Habibi, E., Iotchkova, V., Janssen-Megens, E., Kim, B., Lehrach, H., Lowy, E., Mandoli, A., Matarese, F., Maurano, M.T., Morris, J.A., Pancaldi, V., Pourfarzad, F., Rehnstrom, K., Rendon, A., Risch, T., Sharifi, N., Simon, M.M., Sultan, M., Valencia, A., Walter, K., Wang, S.Y., Frontini, M., Antonarakis, S.E., Clarke, L., Yaspo, M.L., Beck, S., Guigo, R., Rico, D., Martens, J.H., Ouwehand, W.H., Kuijpers, T.W., Paul, D.S., Stunnenberg, H.G., Stegle, O., Downes, K., Pastinen, T., and Soranzo, N.
- Abstract
Contains fulltext : 167824.pdf (Publisher’s version ) (Open Access)
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- 2016
13. The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease
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Astle, W.J., Elding, H., Jiang, T., Allen, D., Ruklisa, D., Mann, A.L., Mead, D., Bouman, H., Riveros-Mckay, F., Kostadima, M.A., Lambourne, J.J., Sivapalaratnam, S., Downes, K., Kundu, K., Bomba, L., Berentsen, K., Bradley, J.R., Daugherty, L.C., Delaneau, O., Freson, K., Garner, S.F., Grassi, L., Guerrero, J., Haimel, M., Janssen-Megens, E.M., Kaan, A., Kamat, M., Kim, B., Mandoli, A., Marchini, J., Martens, J.H.A., Meacham, S., Megy, K., O'Connell, J., Petersen, R., Sharifi, N., Sheard, S.M., Staley, J.R., Tuna, S., Ent, M. van der, Walter, K., Wang, S., Wheeler, E., Wilder, S.P., Iotchkova, V., Moore, C., Sambrook, J., Stunnenberg, H.G., Di Angelantonio, E., Kaptoge, S., Kuijpers, T.W., Carrillo-de-Santa-Pau, E., Juan, D., Rico, D., Valencia, A., Chen, L, Ge, B., Vasquez, L., Kwan, T., Garrido-Martin, D., Watt, S., Yang, Y., Guigo, R., Beck, S., Paul, D.S., Pastinen, T., Bujold, D., Bourque, G., Frontini, M., Danesh, J., Roberts, D.J., Ouwehand, W.H., Butterworth, A.S., Soranzo, N., Astle, W.J., Elding, H., Jiang, T., Allen, D., Ruklisa, D., Mann, A.L., Mead, D., Bouman, H., Riveros-Mckay, F., Kostadima, M.A., Lambourne, J.J., Sivapalaratnam, S., Downes, K., Kundu, K., Bomba, L., Berentsen, K., Bradley, J.R., Daugherty, L.C., Delaneau, O., Freson, K., Garner, S.F., Grassi, L., Guerrero, J., Haimel, M., Janssen-Megens, E.M., Kaan, A., Kamat, M., Kim, B., Mandoli, A., Marchini, J., Martens, J.H.A., Meacham, S., Megy, K., O'Connell, J., Petersen, R., Sharifi, N., Sheard, S.M., Staley, J.R., Tuna, S., Ent, M. van der, Walter, K., Wang, S., Wheeler, E., Wilder, S.P., Iotchkova, V., Moore, C., Sambrook, J., Stunnenberg, H.G., Di Angelantonio, E., Kaptoge, S., Kuijpers, T.W., Carrillo-de-Santa-Pau, E., Juan, D., Rico, D., Valencia, A., Chen, L, Ge, B., Vasquez, L., Kwan, T., Garrido-Martin, D., Watt, S., Yang, Y., Guigo, R., Beck, S., Paul, D.S., Pastinen, T., Bujold, D., Bourque, G., Frontini, M., Danesh, J., Roberts, D.J., Ouwehand, W.H., Butterworth, A.S., and Soranzo, N.
- Abstract
Contains fulltext : 163344.pdf (Publisher’s version ) (Open Access)
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- 2016
14. eFORGE: A Tool for Identifying Cell Type-Specific Signal in Epigenomic Data
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Breeze, C.E., Paul, D.S., van Dongen, J., Butcher, L.M., Ambrose, J.C., Barrett, J.E., Lowe, R., Rakyan, V.K., Iotchkova, V., Frontini, M., Downes, K., Ouwehand, W.H., Laperle, J., Jacques, P.E., Bourque, G., Bergmann, A.K., Siebert, R., Vellenga, E., Saeed, S., Matarese, F., Martens, J.H.A., Stunnenberg, H., Teschendorff, A.E., Herrero, J., Birney, E., Dunham, I., Beck, S., Breeze, C.E., Paul, D.S., van Dongen, J., Butcher, L.M., Ambrose, J.C., Barrett, J.E., Lowe, R., Rakyan, V.K., Iotchkova, V., Frontini, M., Downes, K., Ouwehand, W.H., Laperle, J., Jacques, P.E., Bourque, G., Bergmann, A.K., Siebert, R., Vellenga, E., Saeed, S., Matarese, F., Martens, J.H.A., Stunnenberg, H., Teschendorff, A.E., Herrero, J., Birney, E., Dunham, I., and Beck, S.
- Abstract
Contains fulltext : 161675.pdf (publisher's version ) (Open Access)
- Published
- 2016
15. Seventy-five genetic loci influencing the human red blood cell
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van der Harst, P., Zhang, W., Mateo Leach, I., Rendon, A., Verweij, N., Sehmi, J., Paul, D.S., Elling, U., Allayee, H., Li, X., Radhakrishnan, A., Tan, S.T., Voss, K., Weichenberger, C.X., Albers, C.A., Al-Hussani, A., Asselbergs, F.W., Ciullo, M., Danjou, F., Dina, C., Esko, T., Evans, D.M., Franke, L., Gogele, M., Hartiala, J., Hersch, M., Holm, H., Hottenga, J.J., Kanoni, S., Kleber, M.E., Lagou, V., Langenberg, C., Lopez, L.M., Lyytikainen, L.P., Melander, O., Murgia, F., Nolte, I.M., O'Reilly, P.F., Padmanabhan, S., Parsa, A., Pirastu, N., Porcu, E., Portas, L., Prokopenko, I., Ried, J.S., Shin, S.Y., Tang, C.S., Teumer, A., Traglia, M., Ulivi, S., Westra, H.J., Yang, J., Zhao, J.H., Anni, F., Abdellaoui, A., Attwood, A., Balkau, B., Bandinelli, S., Bastardot, F., Benyamin, B., Boehm, B.O., Cookson, W.O., Das, D, de Bakker, P.I., de Boer, R.A., de Geus, E.J., de Moor, M.H., Dimitriou, M., Domingues, F.S., Doring, A., Engstrom, G., Eyjolfsson, G.I., Ferrucci, L., Fischer, K., Galanello, R., Garner, S.F., Genser, B., Gibson, Q.D., Girotto, G., Gudbjartsson, D.F., Harris, S.E., Hartikainen, A.L., Hastie, C.E., Hedblad, B., Illig, T., Jolley, J., Kahonen, M., Kema, I.P., Kemp, J.P., Liang, L., Lloyd-Jones, H., Loos, R.J., Meacham, S., Medland, S.E., Meisinger, C., Memari, Y., Mihailov, E., Miller, K., Moffatt, M.F., Nauck, M., et al., van der Harst, P., Zhang, W., Mateo Leach, I., Rendon, A., Verweij, N., Sehmi, J., Paul, D.S., Elling, U., Allayee, H., Li, X., Radhakrishnan, A., Tan, S.T., Voss, K., Weichenberger, C.X., Albers, C.A., Al-Hussani, A., Asselbergs, F.W., Ciullo, M., Danjou, F., Dina, C., Esko, T., Evans, D.M., Franke, L., Gogele, M., Hartiala, J., Hersch, M., Holm, H., Hottenga, J.J., Kanoni, S., Kleber, M.E., Lagou, V., Langenberg, C., Lopez, L.M., Lyytikainen, L.P., Melander, O., Murgia, F., Nolte, I.M., O'Reilly, P.F., Padmanabhan, S., Parsa, A., Pirastu, N., Porcu, E., Portas, L., Prokopenko, I., Ried, J.S., Shin, S.Y., Tang, C.S., Teumer, A., Traglia, M., Ulivi, S., Westra, H.J., Yang, J., Zhao, J.H., Anni, F., Abdellaoui, A., Attwood, A., Balkau, B., Bandinelli, S., Bastardot, F., Benyamin, B., Boehm, B.O., Cookson, W.O., Das, D, de Bakker, P.I., de Boer, R.A., de Geus, E.J., de Moor, M.H., Dimitriou, M., Domingues, F.S., Doring, A., Engstrom, G., Eyjolfsson, G.I., Ferrucci, L., Fischer, K., Galanello, R., Garner, S.F., Genser, B., Gibson, Q.D., Girotto, G., Gudbjartsson, D.F., Harris, S.E., Hartikainen, A.L., Hastie, C.E., Hedblad, B., Illig, T., Jolley, J., Kahonen, M., Kema, I.P., Kemp, J.P., Liang, L., Lloyd-Jones, H., Loos, R.J., Meacham, S., Medland, S.E., Meisinger, C., Memari, Y., Mihailov, E., Miller, K., Moffatt, M.F., and Nauck, M., et al.
- Abstract
Item does not contain fulltext, Anaemia is a chief determinant of global ill health, contributing to cognitive impairment, growth retardation and impaired physical capacity. To understand further the genetic factors influencing red blood cells, we carried out a genome-wide association study of haemoglobin concentration and related parameters in up to 135,367 individuals. Here we identify 75 independent genetic loci associated with one or more red blood cell phenotypes at P < 10(-8), which together explain 4-9% of the phenotypic variance per trait. Using expression quantitative trait loci and bioinformatic strategies, we identify 121 candidate genes enriched in functions relevant to red blood cell biology. The candidate genes are expressed preferentially in red blood cell precursors, and 43 have haematopoietic phenotypes in Mus musculus or Drosophila melanogaster. Through open-chromatin and coding-variant analyses we identify potential causal genetic variants at 41 loci. Our findings provide extensive new insights into genetic mechanisms and biological pathways controlling red blood cell formation and function.
- Published
- 2012
16. Compound inheritance of a low-frequency regulatory SNP and a rare null mutation in exon-junction complex subunit RBM8A causes TAR syndrome
- Author
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Albers, C.A., Paul, D.S., Schulze, H., Freson, K., Stephens, J.C., Smethurst, P.A., Jolley, J.D., Cvejic, A., Kostadima, M., Bertone, P., Breuning, M.H., Debili, N., Deloukas, P., Favier, R., Fiedler, J., Hobbs, C.M., Huang, N., Hurles, M.E., Kiddle, G., Krapels, I., Nurden, P., Ruivenkamp, C.A., Sambrook, J.G., Smith, K., Stemple, D.L., Strauss, G., Thys, C., van Geet, C., Newbury-Ecob, R., Ouwehand, W.H., Ghevaert, C., Albers, C.A., Paul, D.S., Schulze, H., Freson, K., Stephens, J.C., Smethurst, P.A., Jolley, J.D., Cvejic, A., Kostadima, M., Bertone, P., Breuning, M.H., Debili, N., Deloukas, P., Favier, R., Fiedler, J., Hobbs, C.M., Huang, N., Hurles, M.E., Kiddle, G., Krapels, I., Nurden, P., Ruivenkamp, C.A., Sambrook, J.G., Smith, K., Stemple, D.L., Strauss, G., Thys, C., van Geet, C., Newbury-Ecob, R., Ouwehand, W.H., and Ghevaert, C.
- Abstract
Item does not contain fulltext, The exon-junction complex (EJC) performs essential RNA processing tasks. Here, we describe the first human disorder, thrombocytopenia with absent radii (TAR), caused by deficiency in one of the four EJC subunits. Compound inheritance of a rare null allele and one of two low-frequency SNPs in the regulatory regions of RBM8A, encoding the Y14 subunit of EJC, causes TAR. We found that this inheritance mechanism explained 53 of 55 cases (P < 5 x 10(-228)) of the rare congenital malformation syndrome. Of the 53 cases with this inheritance pattern, 51 carried a submicroscopic deletion of 1q21.1 that has previously been associated with TAR, and two carried a truncation or frameshift null mutation in RBM8A. We show that the two regulatory SNPs result in diminished RBM8A transcription in vitro and that Y14 expression is reduced in platelets from individuals with TAR. Our data implicate Y14 insufficiency and, presumably, an EJC defect as the cause of TAR syndrome.
- Published
- 2012
17. Tryptophan depletion during continuous CSF sampling in healthy human subjects
- Author
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George M. Anderson, M.D Christopher J. McDougle, M.D Jeffrey A. Gudin, M.D Paul D.S. Kirwin, M.D George R. Heninger, M.D Linda L. Carpenter, M.D Lawrence H. Price, and M.D Gregory H. Pelton
- Subjects
Adult ,Male ,medicine.medical_specialty ,Serotonin ,Metabolite ,Drinking ,chemistry.chemical_compound ,Cerebrospinal fluid ,Catheters, Indwelling ,Internal medicine ,medicine ,Humans ,Tyrosine ,Pharmacology ,chemistry.chemical_classification ,Plasma samples ,medicine.diagnostic_test ,business.industry ,Lumbar puncture ,Tryptophan ,Brain ,Hydroxyindoleacetic Acid ,Amino acid ,Surgery ,Diet ,Psychiatry and Mental health ,Affect ,Endocrinology ,chemistry ,Female ,business - Abstract
The tryptophan (TRP) depletion paradigm has been employed to investigate mood and behavioral effects of acutely lowering plasma TRP, and presumably brain serotonin (5-hydroxytryptamine [5-HT]) levels through administration of a special diet and/or amino acid drink. Our goal was to test the assumption that a corresponding fall in central levels of TRP and 5-HT (measured by its major metabolite, 5-hydroxyindoleacetic acid [5-HIAA]) occurs during the standard execution of this method in healthy adult subjects. Three males and two females completed the protocol, which included a one-day low-TRP diet and a TRP-free amino acid drink. Lumbar puncture was performed, with placement of an indwelling catheter connected to a peristaltic pump and fraction collector. Cerebrospinal fluid (CSF) was sampled continuously for a 13.5-hour period (before, during, and after the drink), with fractions removed every 15 minutes. Plasma samples were simultaneously obtained. CSF TRP levels and plasma TRP levels were highly correlated, falling a mean of 92% and 85% from baseline, respectively. CSF nadirs were reached several hours after plasma nadirs. CSF 5-HIAA decreased modestly (24% to 40%, mean 31% change from baseline), with lowest concentrations observed 8-12 hours after the amino acid drink. These data suggest that TRP depletion results in substantial declines in central 5-HT turnover.
- Published
- 1998
18. Elucidating the chromatin architecture of loci associated with blood traits and coronary artery disease
- Author
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Paul, D.S., primary, Soranzo, N., additional, Ouwehand, W.H., additional, and Deloukas, P., additional
- Published
- 2010
- Full Text
- View/download PDF
19. The role of vision in the development of abstraction...
- Author
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MacCluskie, K.C., Tunick, R.H., Dial, J.G., and Paul, D.S.
- Subjects
VISION disorders ,ABSTRACT thought ,NONVERBAL communication ,ORAL communication - Abstract
Presents a study that investigates the differences in verbal and non-verbal abstraction ability of adults who became blind on the age 2 and 5, when their expressive language ability would have been more fully developed. Procedure of the study; Two instruments used to obtain dependent measures; Results of the investigation; Implications of demographics; Limitations of the study; Conclusions.
- Published
- 1998
- Full Text
- View/download PDF
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