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BioJava is an open-source project that provides a Java library for processing biological data. The project aims to simplify bioinformatic analyses by implementing parsers, data structures, and algorithms for common tasks in genomics, structural biology, ontologies, phylogenetics, and more. Since 2012, we have released two major versions of the library (4 and 5) that include many new features to tackle challenges with increasingly complex macromolecular structure data. BioJava requires Java 8 or higher and is freely available under the LGPL 2.1 license. The project is hosted on GitHub at https://github.com/biojava/biojava. More information and documentation can be found online on the BioJava website (http://www.biojava.org) and tutorial (https://github.com/biojava/biojava-tutorial). All inquiries should be directed to the GitHub page or the BioJava mailing list (http://lists.open-bio.org/mailman/listinfo/biojava-l).

As devices scale closer to the atomic size, a complete understanding of the physical mechanisms involving defects in high-κ dielectrics is essential to improve the performance of electron devices and to mitigate key reliability phenomena, such as Random Telegraph Noise (RTN). In fact, crucial aspects of defects in HfO2 are still under investigation (e.g., the presence of metastable states and their properties), but it is well known that oxygen vacancies (V+s) and oxygen ions (O0s) are the most abundant defects in HfO2. In this work, we use simulations to gain insights into the RTN that emerges when a constant voltage is applied across a TiN/(4 nm)HfO2/TiN stack. Signals exhibit different RTN properties over bias and, thus, appear to originate from different traps. Yet, we demonstrate that they can be instead promoted by the same O0s which change their capture (τc) and emission (τe) time constants with the applied bias, which, in turn, changes the extent of their electrostatic interactions with the traps that assist charge transport (V+s). For a certain bias, RTN is given by the modulation of the trap-assisted current at V+s induced by trapping/detrapping events at O0s, which are, in turn, influenced by the bias itself and by trapped charge at nearby O0s. In this work, we demonstrate that accounting for the effect of trapped charge is essential to provide accurate estimation of the RTN parameters, which allow us to retrieve information about traps and to explain key mechanisms behind complex RTN signals. [ABSTRACT FROM AUTHOR]

This study explores the potential of utilizing tannery sludge for short-chain fatty acids (SCFAs) production through fermentation, incorporating zeolites in the process. The study involved a mild thermal pretreatment of the sludge as well, aimed at enhancing the subsequent fermentation process by increasing the solubilization of the organic matter. Six thermophilic continuously stirred tank reactor runs with varying hydraulic retention times (HRT) and zeolite addition are conducted. Zeolites, known for their low cost and absorption properties, significantly impacted chromium concentrations. SCFA production levels remain relatively consistent across tests. However, the acidification efficiency, as reflected in the SCFAs/sCOD ratios, shows improvement in the presence of Chabazite. Specifically, the acidification efficiency is highest in test RB8 (0.92 COD/COD). This suggests that the addition of Chabazite enhances acidification efficiency in tannery sludge applications. The findings highlight zeolites' potential to absorb heavy metals and improve acidification efficiency, indicating promising practical applications for tannery sludge treatment. [ABSTRACT FROM AUTHOR]